Query psy10259
Match_columns 135
No_of_seqs 64 out of 66
Neff 3.4
Searched_HMMs 13730
Date Fri Aug 16 21:53:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10259.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/10259hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1bkra_ a.40.1.1 (A:) beta-spe 74.6 3.5 0.00025 26.9 5.6 78 43-122 8-103 (108)
2 d1dxxa2 a.40.1.1 (A:120-246) D 56.3 20 0.0014 23.8 6.7 78 43-122 22-118 (127)
3 d1sh5a2 a.40.1.1 (A:128-237) A 50.8 28 0.002 22.5 6.7 76 44-121 13-106 (110)
4 d1bhda_ a.40.1.1 (A:) Utrophin 40.8 40 0.0029 21.4 7.7 76 44-121 12-105 (108)
5 d2i5ua1 a.275.1.1 (A:2-75) Unc 28.7 21 0.0015 22.3 2.9 16 106-121 43-64 (74)
6 d2d9ia1 d.68.8.1 (A:8-90) Nedd 27.5 59 0.0043 19.4 5.1 30 99-134 45-74 (83)
7 d1dwka2 d.72.1.1 (A:87-156) Cy 23.6 23 0.0016 22.6 2.3 20 69-88 12-31 (70)
8 d2fyxa1 d.58.57.1 (A:1-130) Pu 20.5 18 0.0013 24.1 1.3 71 16-91 11-94 (130)
9 d2av5a1 d.58.59.1 (A:15-120) R 20.4 30 0.0022 22.0 2.5 23 101-123 12-34 (106)
10 d1rzua_ c.87.1.8 (A:) Glycogen 19.4 49 0.0035 24.5 3.8 46 19-70 419-467 (477)
No 1
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}
Probab=74.63 E-value=3.5 Score=26.86 Aligned_cols=78 Identities=21% Similarity=0.419 Sum_probs=48.9
Q ss_pred hhhHHHhhccCCcccceeccc--cccch---hHHHHHhhhhHHHH--H-----HHHHHHHHhcchhcccCccCCCchHH-
Q psy10259 43 MAMCAVVRQTYWVIMNKQDYS--WDDHG---YSLMNRLYNDVGNL--L-----DDKFKIAYNLTYYTLAGRTQVDTSRF- 109 (135)
Q Consensus 43 ~~~~~~~R~~~~~tfr~qdYS--WedHG---fsLvnrlypd~a~L--L-----DekF~~~~~LTyntmg~~~~VDTs~f- 109 (135)
..||..+- +.++..++.+|| |.| | ..|+++|.|++-.. | -+..+.+-+.....+|-.+-++.+.+
T Consensus 8 L~W~~~~~-~~y~~v~V~nFs~sw~D-G~af~aLi~~~~P~~~~~~~l~~~~~~~~~~~a~~~ae~~lgip~ll~~ed~~ 85 (108)
T d1bkra_ 8 LLWCQMKT-AGYPNVNIHNFTTSWRD-GMAFNALIHKHRPDLIDFDKLKKSNAHYNLQNAFNLAEQHLGLTKLLDPEDIS 85 (108)
T ss_dssp HHHHHHHT-TTCTTCCCSSSSGGGTT-SHHHHHHHHHHCGGGCCGGGCCTTCHHHHHHHHHHHHHHHHCCCCCCCHHHHS
T ss_pred HHHHHHHh-cCCCCcCcccCCCcccC-cHHHHHHHHHHCcCcccHHhcccCCHHHHHHHHHHHHHHhcCCCCcCCHHhcc
Confidence 36887665 455566899998 875 6 67889999985421 1 23444555555556665444444333
Q ss_pred -----HHHHHHHHHhhhc
Q psy10259 110 -----RRAIWNYVQCLFG 122 (135)
Q Consensus 110 -----R~AIWnYiq~i~G 122 (135)
.++|=.||..+|-
T Consensus 86 ~~~pD~~si~~Yvs~~~~ 103 (108)
T d1bkra_ 86 VDHPDEKSIITYVVTYYH 103 (108)
T ss_dssp SSSCCHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 4678888887763
No 2
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=56.28 E-value=20 Score=23.84 Aligned_cols=78 Identities=19% Similarity=0.466 Sum_probs=49.7
Q ss_pred hhhHHHhhccCCcccceeccc--cccch---hHHHHHhhhhH---HHHHHH-----HHHHHHhcchhcccCccCCCchHH
Q psy10259 43 MAMCAVVRQTYWVIMNKQDYS--WDDHG---YSLMNRLYNDV---GNLLDD-----KFKIAYNLTYYTLAGRTQVDTSRF 109 (135)
Q Consensus 43 ~~~~~~~R~~~~~tfr~qdYS--WedHG---fsLvnrlypd~---a~LLDe-----kF~~~~~LTyntmg~~~~VDTs~f 109 (135)
..||..+= +.++-.++.+|| |.| | ..|+++|.|++ ..+++. .++.+-++....+|-.+-+|+.-+
T Consensus 22 L~W~~~~~-~~y~~v~v~NFs~sw~D-G~a~~aLih~~~P~li~~~~~l~~~~~~~~~~~a~~~Ae~~lgip~ll~~~d~ 99 (127)
T d1dxxa2 22 LSWVRQST-RNYPQVNVINFTTSWSD-GLALNALIHSHRPDLFDWNSVVSQQSATQRLEHAFNIARYQLGIEKLLDPEDV 99 (127)
T ss_dssp HHHHHHHH-TTCTTCCCCSSSGGGTT-SHHHHHHHHHHCGGGSCHHHHHTCCCHHHHHHHHHHHHHHTTCCCCCCCHHHH
T ss_pred HHHHHHHh-ccCCCccccCCcccccc-HHHHHHHHHHHCcccccchhhcCcCCHHHHHHHHHHHHHHhCCCCCcCCHHHh
Confidence 35887543 445666899995 875 6 67889999995 344542 244555555556775444444333
Q ss_pred ------HHHHHHHHHhhhc
Q psy10259 110 ------RRAIWNYVQCLFG 122 (135)
Q Consensus 110 ------R~AIWnYiq~i~G 122 (135)
.++|=.|+..+|-
T Consensus 100 ~~~~pD~ksi~~Yvs~l~~ 118 (127)
T d1dxxa2 100 DTTYPDKKSILMYITSLFQ 118 (127)
T ss_dssp SSSSCCHHHHHHHHHHHHT
T ss_pred ccCCCcHHHHHHHHHHHHH
Confidence 4778889888864
No 3
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}
Probab=50.83 E-value=28 Score=22.48 Aligned_cols=76 Identities=16% Similarity=0.313 Sum_probs=46.0
Q ss_pred hhHHHhhccCCcccceeccc--cccch---hHHHHHhhhhHH--HHHH-----HHHHHHHhcchhcccCccCCCchHH--
Q psy10259 44 AMCAVVRQTYWVIMNKQDYS--WDDHG---YSLMNRLYNDVG--NLLD-----DKFKIAYNLTYYTLAGRTQVDTSRF-- 109 (135)
Q Consensus 44 ~~~~~~R~~~~~tfr~qdYS--WedHG---fsLvnrlypd~a--~LLD-----ekF~~~~~LTyntmg~~~~VDTs~f-- 109 (135)
.||..+=. .++..++.+|+ |.| | ..|+++|.|++- +.|+ +.++.|-+.-...+|-..-+|++-+
T Consensus 13 ~W~~~~~~-~y~~v~v~nFs~sw~D-G~afcaLih~~~P~~id~~~l~~~~~~~~~~~a~~~Ae~~lgip~ll~~eD~~~ 90 (110)
T d1sh5a2 13 LWSQRMVE-GYQGLRCDNFTTSWRD-GRLFNAIIHRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPEDVDV 90 (110)
T ss_dssp HHHHHHTT-TSTTCCCCCSSGGGTT-SHHHHHHHHTTCTTTCCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCCCHHHHSS
T ss_pred HHHHHHcC-CCCCeeccCCcccccC-cHHHHHHHHHHCcccCChhhcCccCHHHHHHHHHHHHHHcCCCCCCCCHHHHcc
Confidence 57766533 45556788885 764 6 678899999963 2222 3345555555556664443443332
Q ss_pred ----HHHHHHHHHhhh
Q psy10259 110 ----RRAIWNYVQCLF 121 (135)
Q Consensus 110 ----R~AIWnYiq~i~ 121 (135)
.++|=.|+..+|
T Consensus 91 ~~pD~~sv~~Yvs~ly 106 (110)
T d1sh5a2 91 PQPDEKSIITYVSSLY 106 (110)
T ss_dssp SSCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 577888888776
No 4
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=40.76 E-value=40 Score=21.41 Aligned_cols=76 Identities=17% Similarity=0.350 Sum_probs=45.3
Q ss_pred hhHHHhhccCCcccceeccc--cccch---hHHHHHhhhhHHH--HHHH-----HHHHHHhcchhcccCccCCCchHH--
Q psy10259 44 AMCAVVRQTYWVIMNKQDYS--WDDHG---YSLMNRLYNDVGN--LLDD-----KFKIAYNLTYYTLAGRTQVDTSRF-- 109 (135)
Q Consensus 44 ~~~~~~R~~~~~tfr~qdYS--WedHG---fsLvnrlypd~a~--LLDe-----kF~~~~~LTyntmg~~~~VDTs~f-- 109 (135)
.||..+-.. ++-.++.+|| |.| | ..|+.+|.|++-. -|+. ..+.+-+.-...+|-.+-+|+.-+
T Consensus 12 ~W~~~~~~~-y~~v~v~nFs~sw~D-G~a~caLih~~~P~~i~~~~l~~~~~~~~~~~af~~a~~~lgip~ll~~~D~~~ 89 (108)
T d1bhda_ 12 SWVRQTTRP-YSQVNVLNFTTSWTD-GLAFNAVLHRHKPDLFSWDKVVKMSPIERLEHAFSKAQTYLGIEKLLDPEDVAV 89 (108)
T ss_dssp HHHHHHHTT-STTCCCCSSSGGGTT-SHHHHHHHHHHCGGGSCHHHHHHSCHHHHHHHHHHHHHHHHCCCCCSCHHHHHT
T ss_pred HHHHHHhcc-CCCcCcccCcccccc-chHHHHHHHHHCccccChhhcCcCCHHHHHHHHHHHHHHhCCCCCCCCHHHhcc
Confidence 488765543 5556888885 875 6 6788999998533 1211 133344433445665444444333
Q ss_pred ----HHHHHHHHHhhh
Q psy10259 110 ----RRAIWNYVQCLF 121 (135)
Q Consensus 110 ----R~AIWnYiq~i~ 121 (135)
.++|=.||..+|
T Consensus 90 ~~pD~~si~~Yvs~~y 105 (108)
T d1bhda_ 90 RLPDKKSIIMYLTSLF 105 (108)
T ss_dssp SCCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH
Confidence 577888888776
No 5
>d2i5ua1 a.275.1.1 (A:2-75) Uncaracterized protein EF2839 {Enterococcus faecalis [TaxId: 1351]}
Probab=28.71 E-value=21 Score=22.31 Aligned_cols=16 Identities=25% Similarity=0.619 Sum_probs=10.4
Q ss_pred chHHHHHH------HHHHHhhh
Q psy10259 106 TSRFRRAI------WNYVQCLF 121 (135)
Q Consensus 106 Ts~fR~AI------WnYiq~i~ 121 (135)
..++++|+ |.||+.|.
T Consensus 43 ~~Al~~Av~~n~~n~~Yi~~IL 64 (74)
T d2i5ua1 43 VKAIEIAIDANARNYNYINAIL 64 (74)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHH
Confidence 34556665 78888775
No 6
>d2d9ia1 d.68.8.1 (A:8-90) Nedd4-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.47 E-value=59 Score=19.42 Aligned_cols=30 Identities=17% Similarity=0.469 Sum_probs=21.1
Q ss_pred cCccCCCchHHHHHHHHHHHhhhcccccCCCCccCC
Q psy10259 99 AGRTQVDTSRFRRAIWNYVQCLFGIRHDDYDYGEVN 134 (135)
Q Consensus 99 g~~~~VDTs~fR~AIWnYiq~i~GI~~DDYdY~eIN 134 (135)
|.+..-.++.+|.||..|.+. ..|.|.+.|
T Consensus 45 G~hS~~g~~~lk~~V~~~L~~------~~~~~~e~~ 74 (83)
T d2d9ia1 45 GNHSQGGVARIKPAVIKYLIS------HSFRFSEIK 74 (83)
T ss_dssp SGGGTTCTTCHHHHHHHHHHH------TTCCEECCS
T ss_pred CCCCCCCcchHHHHHHHHHHH------CCCceecCC
Confidence 344445688999999999976 335566655
No 7
>d1dwka2 d.72.1.1 (A:87-156) Cyanase C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=23.56 E-value=23 Score=22.57 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=17.7
Q ss_pred hHHHHHhhhhHHHHHHHHHH
Q psy10259 69 YSLMNRLYNDVGNLLDDKFK 88 (135)
Q Consensus 69 fsLvnrlypd~a~LLDekF~ 88 (135)
|++|.-|-|-+-+++.|||-
T Consensus 12 yE~v~vYG~~~K~li~E~FG 31 (70)
T d1dwka2 12 YEMLQVYGTTLKALVHEKFG 31 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcHHHHHHHHHHcc
Confidence 67888999999999999984
No 8
>d2fyxa1 d.58.57.1 (A:1-130) Putative transposase DR0177 {Deinococcus radiodurans [TaxId: 1299]}
Probab=20.55 E-value=18 Score=24.10 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=40.7
Q ss_pred hceeeeeecCchhhhhhHHHHHHhhch-hhhHHHhhccCCcccceeccccccch------------hHHHHHhhhhHHHH
Q psy10259 16 VGYHLVFDTTNRRKLLFQKTMITIIST-MAMCAVVRQTYWVIMNKQDYSWDDHG------------YSLMNRLYNDVGNL 82 (135)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~~~~~tfr~qdYSWedHG------------fsLvnrlypd~a~L 82 (135)
.-||+||.+-.||++|....-..+-.- ...|+. -+.......-- .||= ..+|+.+=..-+..
T Consensus 11 l~yHlVf~tKyR~~vl~~~i~~~l~~~i~~~~~~---~~~~i~~~~~~--~DHVHllv~~~p~~svs~~v~~lKg~Ssr~ 85 (130)
T d2fyxa1 11 LEYHLIWATKYRHQVLVDEVADGLKDILRDIATQ---NGLELVALEVM--PDYVHLLLGATPQHVIPDFVKALKGASARR 85 (130)
T ss_dssp EEEEEEEECGGGCCCCCHHHHHHHHHHHHHHHHH---TTCEEEEEEEC--SSEEEEEEEECTTCCHHHHHHHHHHHHHHH
T ss_pred eeEEEEEcccCchhhccHHHHHHHHHHHHHHHHh---cCcceeecccc--cccceeEEecCCCcchHHHhhhhcchhHHH
Confidence 469999999999999865432222111 112221 22222221111 2343 56777777778888
Q ss_pred HHHHHHHHH
Q psy10259 83 LDDKFKIAY 91 (135)
Q Consensus 83 LDekF~~~~ 91 (135)
|-++|....
T Consensus 86 i~~~f~~lk 94 (130)
T d2fyxa1 86 MFSAFPHLK 94 (130)
T ss_dssp HHHHCGGGC
T ss_pred HHHhCchhh
Confidence 888887654
No 9
>d2av5a1 d.58.59.1 (A:15-120) RNase P protein component 2, Rnp2 {Pyrococcus furiosus [TaxId: 2261]}
Probab=20.39 E-value=30 Score=22.03 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.0
Q ss_pred ccCCCchHHHHHHHHHHHhhhcc
Q psy10259 101 RTQVDTSRFRRAIWNYVQCLFGI 123 (135)
Q Consensus 101 ~~~VDTs~fR~AIWnYiq~i~GI 123 (135)
..+++...+-+|||+=++.+||-
T Consensus 12 ~~~l~~~~l~~~Ir~~v~~lfGd 34 (106)
T d2av5a1 12 ENQFNKDEIKEAIWNACLRTLGE 34 (106)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHhcCh
Confidence 34688899999999999999994
No 10
>d1rzua_ c.87.1.8 (A:) Glycogen synthase 1, GlgA {Agrobacterium tumefaciens [TaxId: 358]}
Probab=19.39 E-value=49 Score=24.52 Aligned_cols=46 Identities=17% Similarity=0.146 Sum_probs=27.4
Q ss_pred eeeeecCchhhhhhHHHHHHhh---chhhhHHHhhccCCcccceeccccccchhH
Q psy10259 19 HLVFDTTNRRKLLFQKTMITII---STMAMCAVVRQTYWVIMNKQDYSWDDHGYS 70 (135)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~R~~~~~tfr~qdYSWedHGfs 70 (135)
..+|+..++.. |++.+-..|- .|+.+.+..|.. ..++|||+.++-.
T Consensus 419 G~l~~~~d~~~-la~ai~~~l~~~~~~~~~~~~~~~a-----~~~~fsw~~~a~~ 467 (477)
T d1rzua_ 419 GVQFSPVTLDG-LKQAIRRTVRYYHDPKLWTQMQKLG-----MKSDVSWEKSAGL 467 (477)
T ss_dssp BEEESSCSHHH-HHHHHHHHHHHHTCHHHHHHHHHHH-----HTCCCBHHHHHHH
T ss_pred eEEeCCCCHHH-HHHHHHHHHhhhCCHHHHHHHHHHH-----HHhhCCHHHHHHH
Confidence 34688888855 5565543332 466666555443 2468999966533
Done!