RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy10259
         (135 letters)



>gnl|CDD|218186 pfam04636, PA26, PA26 p53-induced protein (sestrin).  PA26 is a
           p53-inducible protein. Its function is unknown. It has
           similarity to pfam04636 in its N-terminus.
          Length = 450

 Score =  160 bits (407), Expect = 2e-48
 Identities = 57/76 (75%), Positives = 68/76 (89%)

Query: 60  QDYSWDDHGYSLMNRLYNDVGNLLDDKFKIAYNLTYYTLAGRTQVDTSRFRRAIWNYVQC 119
           QDYSW+DHGYSL+NRLY D+G LLD+KF+ AY LTY T+A  T VDTS+FRRAIWNY+QC
Sbjct: 310 QDYSWEDHGYSLVNRLYPDLGQLLDEKFRAAYTLTYNTMANHTDVDTSKFRRAIWNYIQC 369

Query: 120 LFGIRHDDYDYGEVNQ 135
           ++GIR+DDYDYGEVNQ
Sbjct: 370 IYGIRYDDYDYGEVNQ 385


>gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein.  [Transport and
           binding proteins, Cations and iron carrying compounds].
          Length = 505

 Score = 29.6 bits (67), Expect = 0.41
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 7/56 (12%)

Query: 6   FDTMFFLGKLVGYHLVF----DTTNRRKLLFQKTMITIISTMAMCAVVRQTYWVIM 57
             + FF+G L+G   VF    D   R+K+L   T++T +S   +       Y V +
Sbjct: 132 TQSCFFVGVLLG-SFVFGYLSDRFGRKKVLLLSTLVTAVSG--VLTAFSPNYTVFL 184


>gnl|CDD|180279 PRK05834, PRK05834, hypothetical protein; Provisional.
          Length = 194

 Score = 26.9 bits (60), Expect = 2.9
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 6/47 (12%)

Query: 55  VIMNKQDYSWDDHGYS--LMNRLYNDVGNLLDDKFKIAYNLTYYTLA 99
           V+ +K+DY W +      +   +Y    N+ + KF IAY +  YT A
Sbjct: 58  VLYDKKDYRWKEASIDSPIHASIYK---NISEAKF-IAYAMPPYTTA 100


>gnl|CDD|237919 PRK15193, PRK15193, outer membrane usher protein; Provisional.
          Length = 876

 Score = 27.2 bits (60), Expect = 3.2
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 4/50 (8%)

Query: 62  YSWDDHGYSLMNRLYNDVGNLLDDK---FKIAYNLTYYTLAGRTQVDTSR 108
           Y+  D  Y  M+    D G+  D     +   YNL +YT  G+ QV+ S+
Sbjct: 485 YTLSDTMYKHMDGYEFDDGDDEDKSTPMWSDYYNL-FYTKRGKLQVNISQ 533


>gnl|CDD|183581 PRK12542, PRK12542, RNA polymerase sigma factor; Provisional.
          Length = 185

 Score = 26.9 bits (59), Expect = 3.5
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)

Query: 86  KFKIAYNLTYYTLA---GRTQVDTSR-FRRAIWNYVQCLFGIRHDDY 128
           K+K+ YNLTY  ++   G T+ +  + F RA       + GI+HD++
Sbjct: 132 KYKVFYNLTYQEISSVMGITEANVRKQFERARKRVQNMIGGIQHDEF 178


>gnl|CDD|221171 pfam11700, ATG22, Vacuole effluxer Atg22 like.  Autophagy is a
           major survival survival mechanism in which eukaryotes
           recycle cellular nutrients during stress conditions.
           Atg22, Avt3 and Avt4 are partially redundant vacuolar
           effluxes, which mediate the efflux of leucine and other
           amino acids resulting from autophagy. This family also
           includes other transporter proteins.
          Length = 475

 Score = 26.5 bits (59), Expect = 5.5
 Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 1/38 (2%)

Query: 21  VFDTTNRRK-LLFQKTMITIISTMAMCAVVRQTYWVIM 57
           + D  N RK LL    ++  +ST+    V    Y +  
Sbjct: 92  IADYGNYRKNLLIAFALLGGLSTILFLGVTPDQYLLGA 129


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.328    0.141    0.450 

Gapped
Lambda     K      H
   0.267   0.0739    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 6,952,198
Number of extensions: 597207
Number of successful extensions: 647
Number of sequences better than 10.0: 1
Number of HSP's gapped: 647
Number of HSP's successfully gapped: 18
Length of query: 135
Length of database: 10,937,602
Length adjustment: 87
Effective length of query: 48
Effective length of database: 7,078,804
Effective search space: 339782592
Effective search space used: 339782592
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 53 (24.2 bits)