RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10259
(135 letters)
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm,
ricinosomes, SEED germi senescence, hydrolase-hydrolase
inhibitor complex; 2.00A {Ricinus communis} SCOP:
d.3.1.1
Length = 229
Score = 29.4 bits (67), Expect = 0.24
Identities = 10/32 (31%), Positives = 13/32 (40%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNRLYNDVGNL 82
YW + N W + GY M R +D L
Sbjct: 176 TKYWTVKNSWGPEWGEKGYIRMERGISDKEGL 207
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia
arguta} PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Length = 220
Score = 27.9 bits (63), Expect = 0.81
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNRLYNDVGN 81
YW++ N +W + GY + R VG
Sbjct: 175 IDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQ 205
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.1 bits (62), Expect = 0.97
Identities = 19/111 (17%), Positives = 37/111 (33%), Gaps = 31/111 (27%)
Query: 4 LSF-DTMFFLGKLVGYHLVFDTTNRRKLLFQKTM---ITIISTMAMCAVVRQTYWVIMNK 59
+S + +VF R + Q + S M A+ ++
Sbjct: 1777 MSIESLV---------EVVF----YRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ 1823
Query: 60 QDYSWDDHGYSLMNRLYNDVGNLLDDKFKIA-YNLTY--YTLAGRTQ-VDT 106
+ + ++ R+ G L++ I YN+ Y AG + +DT
Sbjct: 1824 EALQY------VVERVGKRTGWLVE----IVNYNVENQQYVAAGDLRALDT 1864
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine
endoprotease, endopeptidase, LEUP hydrolase; HET: AR7;
2.20A {Hordeum vulgare}
Length = 262
Score = 27.6 bits (62), Expect = 1.3
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNR 74
+ YW + N SW + GY + +
Sbjct: 181 KAYWTVKNSWGPSWGEQGYIRVEK 204
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD,
L-DOM domain., hydrolase; 1.63A {Tabernaemontana
divaricata} SCOP: d.3.1.1
Length = 215
Score = 27.5 bits (62), Expect = 1.4
Identities = 8/24 (33%), Positives = 13/24 (54%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNR 74
+ YW++ N +W + GY M R
Sbjct: 171 KNYWIVRNSWGQNWGNQGYIWMER 194
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of
pathogenic protozoa, MSGPP, C protease, parasite,
protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Length = 224
Score = 27.1 bits (61), Expect = 1.6
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNRLYNDVGN 81
+ +W++ N W GY M + G
Sbjct: 182 KDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQ 212
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP:
d.3.1.1 PDB: 1gec_E*
Length = 218
Score = 27.1 bits (61), Expect = 1.6
Identities = 7/32 (21%), Positives = 13/32 (40%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNRLYNDVGNL 82
+ Y +I N +W + GY + R +
Sbjct: 172 KNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGT 203
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline
specificity, carboh papain family, hydrolase; HET: NAG
FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Length = 221
Score = 27.1 bits (61), Expect = 1.6
Identities = 6/24 (25%), Positives = 12/24 (50%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNR 74
+ +W++ N +W + GY R
Sbjct: 174 KDFWIVKNSWGKNWGESGYIRAER 197
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is
covalently bound to Cys25, lysosomeal protein; HET: O64;
1.49A {Homo sapiens} PDB: 2h7j_A* 2f1g_A* 2hh5_B*
2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A*
2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A*
3n4c_A* 3mpe_A* 1nqc_A* ...
Length = 218
Score = 27.1 bits (61), Expect = 1.9
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNR 74
+ YW++ N +++ + GY M R
Sbjct: 178 KEYWLVKNSWGHNFGEEGYIRMAR 201
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen,
intramolecular DISS bonds, insect larVal midgut; HET:
PG4 PG6; 2.11A {Tenebrio molitor}
Length = 329
Score = 27.2 bits (61), Expect = 1.9
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNR 74
Q YW++ N W + GY R
Sbjct: 289 QDYWILKNSWGSGWGESGYWRQVR 312
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor,
disease mutation, disulfide bond, glycoprotein,
hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo
sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A*
1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A*
1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A*
2bdl_A* ...
Length = 215
Score = 26.7 bits (60), Expect = 2.0
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNR 74
+W+I N +W + GY LM R
Sbjct: 175 NKHWIIKNSWGENWGNKGYILMAR 198
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica
papaya} SCOP: d.3.1.1
Length = 322
Score = 26.8 bits (60), Expect = 2.0
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNR 74
+ Y +I N +W + GY + R
Sbjct: 278 KGYILIKNSWGTAWGEKGYIRIKR 301
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain;
2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Length = 314
Score = 26.8 bits (60), Expect = 2.3
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNR 74
+W+I N +W + GY LM R
Sbjct: 274 NKHWIIKNSWGENWGNKGYILMAR 297
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease,
prosegment binding loop, glycoprotein, lysosome,
protease, zymogen; 2.1A {Homo sapiens}
Length = 315
Score = 26.4 bits (59), Expect = 3.0
Identities = 7/24 (29%), Positives = 14/24 (58%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNR 74
+ YW++ N +++ + GY M R
Sbjct: 275 KEYWLVKNSWGHNFGEEGYIRMAR 298
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease,
cysteine protease, zymogen, hydro; 1.40A {Fasciola
hepatica}
Length = 310
Score = 26.4 bits (59), Expect = 3.0
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNR 74
YW++ N SW + GY M R
Sbjct: 266 TDYWIVKNSWGLSWGERGYIRMVR 289
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.7 bits (58), Expect = 3.3
Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 45/120 (37%)
Query: 3 HLSFDT-----------MFFLGKLVGYHLVFDTTNRRKLLFQKTMITIISTMAMCAVVRQ 51
H+ F+T F V D + K + K I I + V
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI--IMSKDAVSG 63
Query: 52 TY---WVIMNKQ--------------DYSW--------------DDHGY-SLMNRLYNDV 79
T W +++KQ +Y + Y +RLYND
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition,
hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1
PDB: 1cjl_A 3hwn_A*
Length = 316
Score = 25.7 bits (57), Expect = 4.9
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 51 QTYWVIMNKQDYSWDDHGYSLMNR 74
YW++ N W GY M +
Sbjct: 276 NKYWLVKNSWGEEWGMGGYVKMAK 299
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB;
0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A*
2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A*
3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A*
2nqd_B* 3kse_A* 2vhs_A ...
Length = 220
Score = 25.6 bits (57), Expect = 5.1
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 53 YWVIMNKQDYSWDDHGYSLMNR 74
YW++ N W GY M +
Sbjct: 182 YWLVKNSWGEEWGMGGYVKMAK 203
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 25.5 bits (57), Expect = 5.6
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 9/30 (30%)
Query: 93 LTYYT--LAGRTQV-------DTSRFRRAI 113
LT LA V D++RFR +
Sbjct: 122 LTDLATQLAPGQPVIGSGTVLDSARFRHLM 151
>3dwb_A ECE-1, endothelin-converting enzyme 1; protein, disease mutation,
glycoprotein, hirschsprung diseas hydrolase, membrane,
metal-binding; HET: 5HD RDF; 2.38A {Homo sapiens}
Length = 670
Score = 25.8 bits (57), Expect = 5.9
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 74 RLYNDVGNLLDDKFKIAYNLTYYTLAGRTQVDTSRFRRAIWNYVQCLFG 122
L + LD +F+ A + G + R++ + + + G
Sbjct: 297 NLVRKTSSFLDQRFQDADEKFMEVMYGTKKTSLPRWKFCV-SDTENNLG 344
>2vjv_A Transposase ORFA; DNA-binding protein, protein-DNA complex, HUH
motif, DNA stem loop, transposition; 1.90A
{Helicobacter pylori} SCOP: d.58.57.1 PDB: 2vhg_A
2vic_A 2vju_A 2vih_A 2a6m_A 2a6o_A
Length = 159
Score = 25.5 bits (54), Expect = 5.9
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 18 YHLVFDTTNRRKLLFQKTMITIISTMAMCAVVRQTYWVIMNKQDYS 63
YH+V+ RRK+L + + + A + + M
Sbjct: 23 YHIVWCPKYRRKVLVGAVEMRLKEIIQEVAKELRVEIIEMQTDKDH 68
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A
{Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Length = 277
Score = 25.0 bits (55), Expect = 9.6
Identities = 8/43 (18%), Positives = 15/43 (34%)
Query: 53 YWVIMNKQDYSWDDHGYSLMNRLYNDVGNLLDDKFKIAYNLTY 95
YW++ N W + G+ + G I + T+
Sbjct: 230 YWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLAIEEHCTF 272
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.141 0.450
Gapped
Lambda K H
0.267 0.0735 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,137,168
Number of extensions: 110398
Number of successful extensions: 326
Number of sequences better than 10.0: 1
Number of HSP's gapped: 325
Number of HSP's successfully gapped: 30
Length of query: 135
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 51
Effective length of database: 4,356,429
Effective search space: 222177879
Effective search space used: 222177879
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (23.8 bits)