BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy1026
         (107 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3PZ8|A Chain A, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
 pdb|3PZ8|B Chain B, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
 pdb|3PZ8|C Chain C, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
 pdb|3PZ8|D Chain D, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
 pdb|3PZ8|E Chain E, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
 pdb|3PZ8|F Chain F, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
 pdb|3PZ8|G Chain G, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
 pdb|3PZ8|H Chain H, Crystal Structure Of Dvl1-Dix(Y17d) Mutant
          Length = 106

 Score = 97.1 bits (240), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/96 (55%), Positives = 64/96 (66%), Gaps = 3/96 (3%)

Query: 3   ETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVL-NRP--NXXXXXXXXXXXXGVVKEE 59
           +TK+IYH+D+EETP LVKLPV+P++VTLADFKNVL NRP               GVVKEE
Sbjct: 5   DTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEE 64

Query: 60  IIEDDAHLPCFNGRVVSWQYNVPKEETPASSKTQTS 95
           I +D+A LPCFNGRVVSW        + A S+   S
Sbjct: 65  IFDDNAKLPCFNGRVVSWLVLAEGAHSDAGSQGTDS 100


>pdb|3PZ7|A Chain A, Crystal Structure Of Ccd1-Dix Domain
          Length = 91

 Score = 54.7 bits (130), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 4  TKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR-PNXXXXXXXXXXXXGVVKEEIIE 62
          TKV+Y  D   TP+ V +P   ++VTL DFK  ++R  N            G VKEEI  
Sbjct: 9  TKVLYFTDRSLTPFXVNIPKRLEEVTLKDFKAAIDREGNHRYHFKAMDPEFGTVKEEIFH 68

Query: 63 DDAHLPCFNGRVVSW 77
          DD  +P + G++V+W
Sbjct: 69 DDDAIPGWEGKIVAW 83


>pdb|1WSP|A Chain A, Crystal Structure Of Axin Dix Domain
 pdb|1WSP|B Chain B, Crystal Structure Of Axin Dix Domain
 pdb|1WSP|C Chain C, Crystal Structure Of Axin Dix Domain
          Length = 84

 Score = 31.6 bits (70), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 6  VIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNRPNXXXXXXXXXXX---XGVVKEEIIE 62
          V Y+   E  PY  +  V    VTL  FK +L +                 GVV EE+ E
Sbjct: 7  VAYYFCGEPIPY--RTLVRGRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFEEVRE 64

Query: 63 DDAHLPCFNGRVVS 76
          D+A LP F  +++ 
Sbjct: 65 DEAILPVFEEKIIG 78


>pdb|2D5G|A Chain A, Structure Of Ubiquitin Fold Protein R767e Mutant
 pdb|2D5G|B Chain B, Structure Of Ubiquitin Fold Protein R767e Mutant
 pdb|2D5G|C Chain C, Structure Of Ubiquitin Fold Protein R767e Mutant
 pdb|2D5G|D Chain D, Structure Of Ubiquitin Fold Protein R767e Mutant
 pdb|2D5G|E Chain E, Structure Of Ubiquitin Fold Protein R767e Mutant
 pdb|2D5G|F Chain F, Structure Of Ubiquitin Fold Protein R767e Mutant
          Length = 85

 Score = 30.8 bits (68), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 6  VIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNRPNXXXXXXXXXXX---XGVVKEEIIE 62
          V Y+   E  PY  +  V    VTL  FK +L +                 GVV EE+ E
Sbjct: 8  VAYYFCGEPIPY--ETLVRGRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFEEVRE 65

Query: 63 DDAHLPCFNGRVVS 76
          D+A LP F  +++ 
Sbjct: 66 DEAILPVFEEKIIG 79


>pdb|2J9V|A Chain A, 2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps28 C-
          Terminus
          Length = 99

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 1  MEETKVIYHIDDEETPYLVKLPVSPDKVTLADFKN 35
          M+  K+ Y+  D+  P L +L +S ++VT  DF+N
Sbjct: 21 MDALKLNYNAKDQLHPLLAELLISINRVTRDDFEN 55


>pdb|2J9U|A Chain A, 2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps28 C-
          Terminus In Complex With The Nzf-N Domain From Escrt-Ii
 pdb|2J9U|C Chain C, 2 Angstrom X-Ray Structure Of The Yeast Escrt-I Vps28 C-
          Terminus In Complex With The Nzf-N Domain From Escrt-Ii
          Length = 96

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 1  MEETKVIYHIDDEETPYLVKLPVSPDKVTLADFKN 35
          M+  K+ Y+  D+  P L +L +S ++VT  DF+N
Sbjct: 18 MDALKLNYNAKDQLHPLLAELLISINRVTRDDFEN 52


>pdb|2GZ6|A Chain A, Crystal Structure Of Anabaena Sp. Ch1
           N-Acetyl-D-Glucosamine 2- Epimerase At 2.0 A
 pdb|2GZ6|B Chain B, Crystal Structure Of Anabaena Sp. Ch1
           N-Acetyl-D-Glucosamine 2- Epimerase At 2.0 A
          Length = 388

 Score = 26.6 bits (57), Expect = 3.5,   Method: Composition-based stats.
 Identities = 8/23 (34%), Positives = 16/23 (69%)

Query: 54  GVVKEEIIEDDAHLPCFNGRVVS 76
           G++ E +  D +H+ CF GR+++
Sbjct: 214 GLMYENVAPDGSHIDCFEGRLIN 236


>pdb|2G3K|A Chain A, Crystal Structure Of The C-Terminal Domain Of Vps28
 pdb|2G3K|B Chain B, Crystal Structure Of The C-Terminal Domain Of Vps28
 pdb|2G3K|C Chain C, Crystal Structure Of The C-Terminal Domain Of Vps28
 pdb|2G3K|D Chain D, Crystal Structure Of The C-Terminal Domain Of Vps28
 pdb|2G3K|E Chain E, Crystal Structure Of The C-Terminal Domain Of Vps28
 pdb|2G3K|F Chain F, Crystal Structure Of The C-Terminal Domain Of Vps28
 pdb|2G3K|G Chain G, Crystal Structure Of The C-Terminal Domain Of Vps28
          Length = 94

 Score = 25.4 bits (54), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 20/31 (64%)

Query: 5  KVIYHIDDEETPYLVKLPVSPDKVTLADFKN 35
          K+ Y+  D+  P L +L +S ++VT  DF+N
Sbjct: 21 KLNYNAKDQLHPLLAELLISINRVTRDDFEN 51


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.136    0.411 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,097,778
Number of Sequences: 62578
Number of extensions: 97275
Number of successful extensions: 205
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 9
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)