Query psy1026
Match_columns 107
No_of_seqs 109 out of 125
Neff 3.8
Searched_HMMs 46136
Date Fri Aug 16 21:54:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1026.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1026hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00021 DAX Domain present 100.0 9.9E-46 2.2E-50 254.3 9.7 82 1-82 1-83 (83)
2 PF00778 DIX: DIX domain; Int 100.0 1.4E-43 3E-48 242.8 9.3 82 1-82 1-84 (84)
3 KOG3571|consensus 100.0 1.5E-38 3.2E-43 274.0 5.0 96 1-96 9-105 (626)
4 PF06136 DUF966: Domain of unk 96.4 0.011 2.3E-07 49.1 6.3 73 5-78 2-85 (337)
5 PF08783 DWNN: DWNN domain; I 84.1 4.8 0.0001 27.1 5.7 66 6-76 1-71 (74)
6 PF02192 PI3K_p85B: PI3-kinase 71.0 1.5 3.2E-05 29.8 0.2 40 26-67 8-59 (78)
7 smart00143 PI3K_p85B PI3-kinas 70.4 1.3 2.9E-05 30.2 -0.1 43 25-67 7-59 (78)
8 PF10860 DUF2661: Protein of u 69.3 2.8 6.2E-05 30.7 1.4 32 5-39 36-67 (113)
9 PF15492 Nbas_N: Neuroblastoma 65.8 13 0.00028 31.0 4.7 66 14-79 190-258 (282)
10 PF14560 Ubiquitin_2: Ubiquiti 52.6 53 0.0011 21.3 5.1 55 16-75 15-78 (87)
11 PF09874 DUF2101: Predicted me 41.1 13 0.00027 29.8 0.8 24 41-65 131-157 (206)
12 PF08247 ENOD40: ENOD40 protei 38.2 24 0.00051 16.7 1.2 10 75-84 3-12 (12)
13 PF11687 DUF3284: Domain of un 33.7 5.8 0.00013 28.0 -1.9 38 41-78 79-117 (120)
14 PF09447 Cnl2_NKP2: Cnl2/NKP2 29.5 34 0.00073 22.7 1.3 16 25-40 17-32 (67)
15 PF06442 DHFR_2: R67 dihydrofo 28.1 25 0.00055 24.1 0.5 14 68-81 36-49 (78)
16 PF11148 DUF2922: Protein of u 26.6 1.7E+02 0.0038 18.5 4.4 36 4-39 2-37 (69)
17 cd05992 PB1 The PB1 domain is 24.0 1.4E+02 0.003 18.4 3.4 40 25-66 18-61 (81)
18 PF06319 DUF1052: Protein of u 23.1 73 0.0016 24.6 2.3 38 28-76 69-112 (157)
19 PF09336 Vps4_C: Vps4 C termin 22.9 44 0.00095 21.3 0.9 13 27-39 29-41 (62)
20 TIGR02913 HAF_rpt probable ext 22.8 76 0.0016 18.7 1.9 16 71-86 7-22 (39)
21 cd01789 Alp11_N Ubiquitin-like 22.6 1.8E+02 0.004 19.0 3.9 46 26-74 21-75 (84)
22 COG3422 Uncharacterized conser 20.8 32 0.00069 22.7 -0.1 17 33-49 5-22 (59)
23 cd02991 UAS_ETEA UAS family, E 20.2 9.6 0.00021 26.7 -2.8 73 32-104 5-83 (116)
No 1
>smart00021 DAX Domain present in Dishevelled and axin. Domain of unknown function.
Probab=100.00 E-value=9.9e-46 Score=254.27 Aligned_cols=82 Identities=71% Similarity=1.213 Sum_probs=80.4
Q ss_pred CcceEEEEEeCCCCCeeeEeccCCCCccChHHHhhhhcCCCceeeeeecCCCC-CceeEeeccCCccccccCCeEEEEEe
Q psy1026 1 MEETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNRPNFKFFFKSMDDDF-GVVKEEIIEDDAHLPCFNGRVVSWQY 79 (107)
Q Consensus 1 ~~~TkV~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~kgnYryfFK~~d~df-gvVkEEI~dD~~~LP~~eGkIv~wl~ 79 (107)
|++|||+||+|||+|||+++||+|+++|||||||++|+|+|||||||++|||| |+|||||+||+++||+|||||||||+
T Consensus 1 ~~~TkV~Y~~d~e~~PY~~~i~~~~~~iTLgdFK~~l~k~~yry~FK~~d~df~gvVkeEi~dD~~~LP~~eGkiv~~v~ 80 (83)
T smart00021 1 CSETKVIYHLDDEETPYLVKVPVPAERVTLGDFKEVLTKKNYKYYFKSMDDDFGGVVKEEIRDDSARLPCFNGRVVSWLV 80 (83)
T ss_pred CCceEEEEEeCCCCCceeEecCCCcCceEHHHHHHhhccCCcEEEEEecCcccCCeeEEEEcCCcccccccCCEEEEEEE
Confidence 78999999999999999999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred cCC
Q psy1026 80 NVP 82 (107)
Q Consensus 80 ~~~ 82 (107)
+++
T Consensus 81 ~~d 83 (83)
T smart00021 81 SVE 83 (83)
T ss_pred ecC
Confidence 875
No 2
>PF00778 DIX: DIX domain; InterPro: IPR001158 Dishevelled (Dsh) protein is an important component of the Wnt signal-transduction pathway. It has three relatively conserved domains: DIX, PDZ and DEP. The DIX domain of Dvl-1 (a mammalian Dishevelled homologue) shares 37% identity with the C-terminal region of Axin. Dsh can interact with the Axin/APC/GSK3/beta-catenin complex, and may thus modulate its activity []. The Wnt signalling pathway is conserved in various species from Caenorhabditis elegans to mammals, and plays important roles in development, cellular proliferation, and differentiation. The molecular mechanisms by which the Wnt signal regulates cellular functions are becoming increasingly well understood. Wnt stabilises cytoplasmic beta-catenin, which stimulates the expression of genes including c-myc, c-jun, fra-1, and cyclin D1. Axin and its homologue Axil are components of the Wnt signalling pathway that negatively regulate this pathway. Other components of the Wnt signalling pathway, including Dvl, glycogen synthase kinase-3beta (GSK-3beta), beta-catenin, and adenomatous polyposis coli (APC), interact with Axin, and the phosphorylation and stability of beta-catenin are regulated in the Axin complex. Axil has similar functions to Axin. Thus, Axin and Axil act as scaffold proteins in the Wnt signalling pathway, thereby modulating the Wnt-dependent cellular functions [].; GO: 0004871 signal transducer activity, 0007275 multicellular organismal development, 0005622 intracellular; PDB: 1WSP_B 2D5G_A 3PZ7_A 3PZ8_H.
Probab=100.00 E-value=1.4e-43 Score=242.78 Aligned_cols=82 Identities=63% Similarity=1.034 Sum_probs=71.0
Q ss_pred CcceEEEEEeCCCCCeeeEeccCCCCccChHHHhhhhcC-CCceeeeeecCCCCC-ceeEeeccCCccccccCCeEEEEE
Q psy1026 1 MEETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR-PNFKFFFKSMDDDFG-VVKEEIIEDDAHLPCFNGRVVSWQ 78 (107)
Q Consensus 1 ~~~TkV~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~k-gnYryfFK~~d~dfg-vVkEEI~dD~~~LP~~eGkIv~wl 78 (107)
|++|+|+||+|+|++||+++||+++++|||||||++|+| ||||||||++|+|+| +|||||+||+++||+|||||+|||
T Consensus 1 ~~~T~V~Y~~~~e~~Py~~~ip~~~~~iTL~dFK~~l~r~G~yrffFK~~~~d~~~~V~eEi~dD~~~LP~~eGkI~~~v 80 (84)
T PF00778_consen 1 MEETKVIYYIDDEETPYVVKIPKPPGEITLGDFKEVLPRPGNYRFFFKSLDPDFGCVVKEEITDDDDILPLFEGKIVAKV 80 (84)
T ss_dssp -SEEEEEEEETT-SS-EEEEESSSSTT-BHHHHHHTCTS-SGEEEEEEEEETTTETEEEEEE-STTSB---BTTEEEEEE
T ss_pred CCceEEEEEeCCCCCceEEEccCCCCccCHHHHHHhhcCCCCceEEEEEeCCCCCeeeEEEEcCCcccccccCCEEEEEE
Confidence 889999999999999999999999999999999999999 799999999999999 999999999999999999999999
Q ss_pred ecCC
Q psy1026 79 YNVP 82 (107)
Q Consensus 79 ~~~~ 82 (107)
++++
T Consensus 81 ~~~d 84 (84)
T PF00778_consen 81 ESVD 84 (84)
T ss_dssp EE--
T ss_pred EeCC
Confidence 9864
No 3
>KOG3571|consensus
Probab=100.00 E-value=1.5e-38 Score=274.04 Aligned_cols=96 Identities=65% Similarity=1.113 Sum_probs=92.0
Q ss_pred CcceEEEEEeCCCCCeeeEeccCCCCccChHHHhhhhcCCCceeeeeecCCCCC-ceeEeeccCCccccccCCeEEEEEe
Q psy1026 1 MEETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNRPNFKFFFKSMDDDFG-VVKEEIIEDDAHLPCFNGRVVSWQY 79 (107)
Q Consensus 1 ~~~TkV~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~kgnYryfFK~~d~dfg-vVkEEI~dD~~~LP~~eGkIv~wl~ 79 (107)
|++|||+||+|||+|||+++||+|+++|||+|||++|+|+|||||||+||+||| +|||||+||+++|||||||||+||+
T Consensus 9 ~~etKviyhlDdettPYlvki~vp~~~vTL~dfK~vl~R~~yKyy~ksmD~D~g~vVKeEi~DDs~rL~cfNGrvvswLv 88 (626)
T KOG3571|consen 9 CSETKVIYHLDDETTPYLVKIPVPPERVTLGDFKNVLTRPNYKYYFKSMDPDFGRVVKEEIADDSARLPCFNGRVVSWLV 88 (626)
T ss_pred ccceEEEEecCCCCCceeEeeecCccceehhhhhhhhccchhhhhhhhhCchhhhhHhhhhccchhhccccCCceEEEEE
Confidence 689999999999999999999999999999999999999999999999999999 8999999999999999999999999
Q ss_pred cCCCCCCCCCCcccccc
Q psy1026 80 NVPKEETPASSKTQTSR 96 (107)
Q Consensus 80 ~~~g~~~~~~~~~~~~~ 96 (107)
+.+|+++++++++.+.|
T Consensus 89 s~~Gs~~~~~~~g~~~~ 105 (626)
T KOG3571|consen 89 SAEGSNTDDTSQGRDRR 105 (626)
T ss_pred ecCCCCCCccccccccc
Confidence 99999998888775554
No 4
>PF06136 DUF966: Domain of unknown function (DUF966); InterPro: IPR010369 This is a family of plant proteins confined to monocotyledons and mosses, with unknown function
Probab=96.35 E-value=0.011 Score=49.15 Aligned_cols=73 Identities=26% Similarity=0.404 Sum_probs=59.5
Q ss_pred EEEEEeCC---CCCeeeEeccCC-CCccChHHHhhhhcC--C-----CceeeeeecCCCCCceeEeeccCCccccccCCe
Q psy1026 5 KVIYHIDD---EETPYLVKLPVS-PDKVTLADFKNVLNR--P-----NFKFFFKSMDDDFGVVKEEIIEDDAHLPCFNGR 73 (107)
Q Consensus 5 kV~Y~~dd---e~tPY~~~Ip~~-~~~iTL~dFK~~l~k--g-----nYryfFK~~d~dfgvVkEEI~dD~~~LP~~eGk 73 (107)
-|+||||+ -+-|=++.|+.+ .+.++|+|+|+-|+- | .|-.=+|.- --.|-||..+.|||-|+|+-.|-
T Consensus 2 ~VVYYLsRnGqLEHPHfieV~~~s~~gL~LRDV~~RL~~LRGkGMp~~ySWS~KRs-YKnGfVW~DL~ddD~I~P~~g~E 80 (337)
T PF06136_consen 2 QVVYYLSRNGQLEHPHFIEVPLSSPQGLYLRDVKDRLTALRGKGMPDMYSWSCKRS-YKNGFVWHDLSDDDLILPASGNE 80 (337)
T ss_pred cEEEEEccCCCCCCCeeEEeccCCCCCcCHHHHHHHHHHhhCCCcceeeEEeeecc-ccCCceeccCcCCCeeecCCCCc
Confidence 38999965 467999998884 567999999999965 3 677777743 45588999999999999998888
Q ss_pred EEEEE
Q psy1026 74 VVSWQ 78 (107)
Q Consensus 74 Iv~wl 78 (107)
-|.+-
T Consensus 81 YVLKG 85 (337)
T PF06136_consen 81 YVLKG 85 (337)
T ss_pred eEeec
Confidence 88874
No 5
>PF08783 DWNN: DWNN domain; InterPro: IPR014891 The ~75-residue DWNN (Domain With No Name) domain is highly conserved through eukaryotic species but is absent in prokaryotes. The DWNN domain is found only at the N terminus of the RBBP6 family of proteins which includes: Mammalian RBBP6, a splicing-associated protein that plays a role in the induction of apoptosis and regulation of the cell cycle. Drosophila melanogaster (Fruit fly) SNAMA (something that sticks like glue), a protein that appears to play a role in apoptosis. All of the identified RBBP6 homologues include the DWNN domain, a CCHC-type zinc finger (see PDOC50158 from PROSITEDOC) and a RING-type zinc finger (see PDOC00449 from PROSITEDOC). The three domain form is found in plants, protozoa, fungi and microsporidia. The RBBP6 homologues in vertebrates, insects and worms are longer and include additional domains. In addition to forming part of the full-length RBBP6 protein, the DWNN domain is also expressed in vertebrates as a small protein containing a DWNN domain and a short C-terminal tail (RBBP6 variant 3). The DWNN domain adopts a fold similar to the ubiquitin one, characterised by two alpha-helices and four beta-sheets ordered as beta-beta-alpha-beta-alpha-beta along the sequence. The similarity of DWNN domain to ubiquitin and the presence of the RING finger suggest that the DWNN domain may act as an ubiquitin-like modifier, possibly playing a role in the regulation of the splicing machinery [, ]. ; GO: 0008270 zinc ion binding, 0005634 nucleus; PDB: 2C7H_A.
Probab=84.06 E-value=4.8 Score=27.10 Aligned_cols=66 Identities=15% Similarity=0.228 Sum_probs=38.7
Q ss_pred EEEEeCCCCCeeeEeccCCCCccChHHHhhhhcC----C-CceeeeeecCCCCCceeEeeccCCccccccCCeEEE
Q psy1026 6 VIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR----P-NFKFFFKSMDDDFGVVKEEIIEDDAHLPCFNGRVVS 76 (107)
Q Consensus 6 V~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~k----g-nYryfFK~~d~dfgvVkEEI~dD~~~LP~~eGkIv~ 76 (107)
|.|-+..+..+..+. ..+..|+++|.|+.+-. | ..-|=..-.+++ -+||..||++++|-----||.
T Consensus 1 V~YKFkS~k~~~~i~--fdG~~Isv~dLKr~I~~~~~lg~~~dfdL~i~na~---t~eeY~dd~~~IprnssVivr 71 (74)
T PF08783_consen 1 VHYKFKSQKDYDTIT--FDGTSISVFDLKREIIEKKKLGKGTDFDLVIYNAQ---TGEEYKDDNELIPRNSSVIVR 71 (74)
T ss_dssp EEEEETT-SSEEEEE--ESSSEEEHHHHHHHHHHHHT---TTTEEEEEEESS---S--EE-STT-EEETT--EEEE
T ss_pred CeEEecccCCccEEE--ECCCeeEHHHHHHHHHHHhCCCcCCcCCEEEECCC---CCCccCCCCeEEeCCCEEEEE
Confidence 678888877766664 55789999999999833 2 112222222333 478999999999975555543
No 6
>PF02192 PI3K_p85B: PI3-kinase family, p85-binding domain; InterPro: IPR003113 This is the region of the p110 phosphatidylinositol 3-kinase (PI3-Kinase) that binds the p85 subunit.; GO: 0046934 phosphatidylinositol-4,5-bisphosphate 3-kinase activity, 0007165 signal transduction, 0005942 phosphatidylinositol 3-kinase complex; PDB: 3HIZ_A 3HHM_A 2RD0_A 4A55_A 2Y3A_A 2V1Y_A.
Probab=71.05 E-value=1.5 Score=29.76 Aligned_cols=40 Identities=20% Similarity=0.439 Sum_probs=24.2
Q ss_pred CccChHHHhhhhcC--CCce----------eeeeecCCCCCceeEeeccCCccc
Q psy1026 26 DKVTLADFKNVLNR--PNFK----------FFFKSMDDDFGVVKEEIIEDDAHL 67 (107)
Q Consensus 26 ~~iTL~dFK~~l~k--gnYr----------yfFK~~d~dfgvVkEEI~dD~~~L 67 (107)
...||.++|+.|=+ ..|. |.|-.+..+ ..+||+.|++.+|
T Consensus 8 ~~~Tl~~iK~~lw~~A~~~PL~~~L~~~~~Y~F~~in~~--ae~EEl~DEsrrL 59 (78)
T PF02192_consen 8 RDATLSEIKEELWEEAKKYPLFSLLKDPSSYIFSCINQF--AEQEELYDESRRL 59 (78)
T ss_dssp TT-BHHHHHHHHHHHGGGSTTCCCS--GGGEEEEEEBTT--SCEEEE--TTSBT
T ss_pred CcCcHHHHHHHHHHHHHhCChHHHhCCCCcEEEEEecCC--CccceeEcchhee
Confidence 68999999997633 2333 333333332 4789999999998
No 7
>smart00143 PI3K_p85B PI3-kinase family, p85-binding domain. Region of p110 PI3K that binds the p85 subunit.
Probab=70.35 E-value=1.3 Score=30.22 Aligned_cols=43 Identities=19% Similarity=0.173 Sum_probs=29.2
Q ss_pred CCccChHHHhhhhcC--CCceeeeeecCCCC--------CceeEeeccCCccc
Q psy1026 25 PDKVTLADFKNVLNR--PNFKFFFKSMDDDF--------GVVKEEIIEDDAHL 67 (107)
Q Consensus 25 ~~~iTL~dFK~~l~k--gnYryfFK~~d~df--------gvVkEEI~dD~~~L 67 (107)
+..+||.++|..|=+ ..|..|..-.|++- ....||+.|++.+|
T Consensus 7 ~~~aTl~~IK~~lw~~A~~~Pl~~~L~d~~~Y~F~~in~~~e~ee~~DEtrRL 59 (78)
T smart00143 7 LREATLSTIKHELFKQARKMPLGQLLQDESSYIFVSVNQTAEIEEFFDETRRL 59 (78)
T ss_pred cccccHHHHHHHHHHHHHhCCHHHHhCCccceEEEeecCCcccccccccchhe
Confidence 368999999998855 34444433333331 24788999999888
No 8
>PF10860 DUF2661: Protein of unknown function (DUF2661); InterPro: IPR020387 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf112; it is a family of uncharacterised viral proteins. This entry also represents the N-terminal region of Fowlpox virus (FPV) FPV217. The protein family is uncharacterised.
Probab=69.27 E-value=2.8 Score=30.72 Aligned_cols=32 Identities=38% Similarity=0.736 Sum_probs=26.4
Q ss_pred EEEEEeCCCCCeeeEeccCCCCccChHHHhhhhcC
Q psy1026 5 KVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR 39 (107)
Q Consensus 5 kV~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~k 39 (107)
-|.||++++..| +||...+.+.+=+||++.++
T Consensus 36 yvlYyien~~~~---~vP~~~~nv~~inFk~~~~~ 67 (113)
T PF10860_consen 36 YVLYYIENESSP---QVPQNCDNVKFINFKDVYPR 67 (113)
T ss_pred EEEEEEcCCCCc---cCCccccceEEEEhhhccch
Confidence 589999999987 66766788899999998776
No 9
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=65.84 E-value=13 Score=31.03 Aligned_cols=66 Identities=30% Similarity=0.628 Sum_probs=49.5
Q ss_pred CCeeeEeccCCCCccChHHHhhhhcC-CCceeeeeecCCCCCceeEeeccCCccccc--cCCeEEEEEe
Q psy1026 14 ETPYLVKLPVSPDKVTLADFKNVLNR-PNFKFFFKSMDDDFGVVKEEIIEDDAHLPC--FNGRVVSWQY 79 (107)
Q Consensus 14 ~tPY~~~Ip~~~~~iTL~dFK~~l~k-gnYryfFK~~d~dfgvVkEEI~dD~~~LP~--~eGkIv~wl~ 79 (107)
.-||-..+...++.++..-=+..|-| .+.|+|.+.-..+-|+.|.=|+=|...|-+ +.|+|..|-.
T Consensus 190 ~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~i 258 (282)
T PF15492_consen 190 DSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEI 258 (282)
T ss_pred CCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEec
Confidence 34777777766677764432233334 799999987767779999999999999964 9999999943
No 10
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=52.58 E-value=53 Score=21.34 Aligned_cols=55 Identities=25% Similarity=0.395 Sum_probs=36.5
Q ss_pred eeeEeccCCCCccChHHHhhhhcC--C----CceeeeeecCCCCCceeEeeccCCccc---cccCCeEE
Q psy1026 16 PYLVKLPVSPDKVTLADFKNVLNR--P----NFKFFFKSMDDDFGVVKEEIIEDDAHL---PCFNGRVV 75 (107)
Q Consensus 16 PY~~~Ip~~~~~iTL~dFK~~l~k--g----nYryfFK~~d~dfgvVkEEI~dD~~~L---P~~eGkIv 75 (107)
....++| ..+|++++|..|.+ | +-|-.++. ++-+..-+++.||++.| ++-+|-.+
T Consensus 15 ~~ekr~~---~~~Tv~eLK~kl~~~~Gi~~~~m~L~l~~--~~~~~~~~~~~dd~~~L~~y~~~dg~~i 78 (87)
T PF14560_consen 15 SVEKRFP---KSITVSELKQKLEKLTGIPPSDMRLQLKS--DKDDSKIEELDDDDATLGSYGIKDGMRI 78 (87)
T ss_dssp EEEEEEE---TTSBHHHHHHHHHHHHTS-TTTEEEEEE---TSSSSEEEESSGSSSBCCHHT-STTEEE
T ss_pred eEEEEcC---CCCCHHHHHHHHHHHhCCCcccEEEEEEe--cCCCccccccCCCccEeecCCCCCCCEE
Confidence 4555665 58999999999977 3 55655542 22345666678888888 66777554
No 11
>PF09874 DUF2101: Predicted membrane protein (DUF2101); InterPro: IPR018663 This family of conserved hypothetical proteins has no known function.
Probab=41.10 E-value=13 Score=29.84 Aligned_cols=24 Identities=42% Similarity=0.841 Sum_probs=18.1
Q ss_pred Cceeeeeec---CCCCCceeEeeccCCc
Q psy1026 41 NFKFFFKSM---DDDFGVVKEEIIEDDA 65 (107)
Q Consensus 41 nYryfFK~~---d~dfgvVkEEI~dD~~ 65 (107)
-+|++||+. |--+|+| |||.+|..
T Consensus 131 ~fr~~Fr~ky~RdyTyG~V-eEv~~~~v 157 (206)
T PF09874_consen 131 AFRYYFRSKYGRDYTYGVV-EEVKENLV 157 (206)
T ss_pred HHhhheeeeecccceeEEE-EEecCCEE
Confidence 368889987 5556999 99988743
No 12
>PF08247 ENOD40: ENOD40 protein; InterPro: IPR013186 The soybean early nodulin 40 (ENOD40) mRNA contains two short overlapping ORFs; in vitro translation yields two peptides of 12 and 24 amino acids []. The putative role of the ENOD40 genes has been in favour of organogenesis, such as induction of the cortical cell divisions that lead to initiation of nodule primordia, in developing lateral roots and embryonic tissues. This supports the hypothesis for a role of ENOD40 in lateral organ development [].
Probab=38.17 E-value=24 Score=16.69 Aligned_cols=10 Identities=20% Similarity=0.624 Sum_probs=8.3
Q ss_pred EEEEecCCCC
Q psy1026 75 VSWQYNVPKE 84 (107)
Q Consensus 75 v~wl~~~~g~ 84 (107)
.+|..+++||
T Consensus 3 l~wqksihgs 12 (12)
T PF08247_consen 3 LCWQKSIHGS 12 (12)
T ss_pred eeEeeeecCC
Confidence 5799999886
No 13
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=33.69 E-value=5.8 Score=27.98 Aligned_cols=38 Identities=18% Similarity=0.358 Sum_probs=28.4
Q ss_pred CceeeeeecCCC-CCceeEeeccCCccccccCCeEEEEE
Q psy1026 41 NFKFFFKSMDDD-FGVVKEEIIEDDAHLPCFNGRVVSWQ 78 (107)
Q Consensus 41 nYryfFK~~d~d-fgvVkEEI~dD~~~LP~~eGkIv~wl 78 (107)
.-+|-++.+|++ ..++.+|-......+..+|.++++|+
T Consensus 79 ~i~Y~i~~~~~~~~~v~y~E~~~~~~~~~~~n~~l~~~~ 117 (120)
T PF11687_consen 79 TISYEIEPLDDGSIEVTYEEEYESKGFFQKLNNKLMGFF 117 (120)
T ss_pred EEEEEEEECCCCcEEEEEEEEEccCCHHHHHHHHHHHHh
Confidence 346777777777 57788888888888888888777665
No 14
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=29.46 E-value=34 Score=22.74 Aligned_cols=16 Identities=31% Similarity=0.769 Sum_probs=13.8
Q ss_pred CCccChHHHhhhhcCC
Q psy1026 25 PDKVTLADFKNVLNRP 40 (107)
Q Consensus 25 ~~~iTL~dFK~~l~kg 40 (107)
++-|||.+|++.++|.
T Consensus 17 ~~iisl~qF~~LFPr~ 32 (67)
T PF09447_consen 17 PDIISLEQFRKLFPRR 32 (67)
T ss_pred ccccCHHHHHHHcccc
Confidence 3678999999999993
No 15
>PF06442 DHFR_2: R67 dihydrofolate reductase; InterPro: IPR009159 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself []. This entry represents a plasmid-encoded DHFR which shows a high level of resistance to the antibiotic trimethoprim. It is a homotetramer with an unusual pore, which contains the active site, passing through the middle of the molecule []. Its structure is unrelated to that of chromosomal DHFRs.; GO: 0004146 dihydrofolate reductase activity, 0042493 response to drug, 0055114 oxidation-reduction process; PDB: 1VIF_A 3SFM_A 2P4T_A 2GQV_A 2RK2_A 2RH2_A 2RK1_A 1VIE_A.
Probab=28.13 E-value=25 Score=24.09 Aligned_cols=14 Identities=29% Similarity=0.743 Sum_probs=8.5
Q ss_pred cccCCeEEEEEecC
Q psy1026 68 PCFNGRVVSWQYNV 81 (107)
Q Consensus 68 P~~eGkIv~wl~~~ 81 (107)
-.|.|+||+|--+.
T Consensus 36 aawqg~vvgwy~t~ 49 (78)
T PF06442_consen 36 AAWQGQVVGWYCTK 49 (78)
T ss_dssp S--EEEEEEEE--S
T ss_pred ccccceEeEEEecc
Confidence 36999999997543
No 16
>PF11148 DUF2922: Protein of unknown function (DUF2922); InterPro: IPR021321 This bacterial family of proteins has no known function.
Probab=26.62 E-value=1.7e+02 Score=18.47 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCCeeeEeccCCCCccChHHHhhhhcC
Q psy1026 4 TKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR 39 (107)
Q Consensus 4 TkV~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~k 39 (107)
|-...+...+...+...|+-|.+.+|..+.|.+.+.
T Consensus 2 tL~l~F~~~~gk~~ti~i~~pk~~lt~~~V~~~m~~ 37 (69)
T PF11148_consen 2 TLELVFKTEDGKTFTISIPNPKEDLTEAEVKAAMQA 37 (69)
T ss_pred EEEEEEEcCCCCEEEEEcCCCCCCCCHHHHHHHHHH
Confidence 344567778889999999999999999999998876
No 17
>cd05992 PB1 The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domain, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as a noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants.
Probab=23.97 E-value=1.4e+02 Score=18.43 Aligned_cols=40 Identities=18% Similarity=0.218 Sum_probs=26.3
Q ss_pred CCccChHHHhhhhcC--CC--ceeeeeecCCCCCceeEeeccCCcc
Q psy1026 25 PDKVTLADFKNVLNR--PN--FKFFFKSMDDDFGVVKEEIIEDDAH 66 (107)
Q Consensus 25 ~~~iTL~dFK~~l~k--gn--YryfFK~~d~dfgvVkEEI~dD~~~ 66 (107)
+..+|+.++++.+.+ +. -.+-.|..|+|- =.--|.+|++.
T Consensus 18 ~~~~s~~~L~~~i~~~~~~~~~~~~l~y~D~e~--d~v~l~sd~Dl 61 (81)
T cd05992 18 SRSISFEDLRSKIAEKFGLDAVSFKLKYPDEDG--DLVTISSDEDL 61 (81)
T ss_pred cCCCCHHHHHHHHHHHhCCCCCcEEEEeeCCCC--CEEEeCCHHHH
Confidence 479999999999876 43 367777777764 22344555443
No 18
>PF06319 DUF1052: Protein of unknown function (DUF1052); InterPro: IPR009394 This entry is represented by Ralstonia phage RSL1, Orf212. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacterial proteins of unknown function.; PDB: 3DNX_A.
Probab=23.12 E-value=73 Score=24.55 Aligned_cols=38 Identities=32% Similarity=0.704 Sum_probs=24.1
Q ss_pred cChHHHhhhhcC-CCc-----eeeeeecCCCCCceeEeeccCCccccccCCeEEE
Q psy1026 28 VTLADFKNVLNR-PNF-----KFFFKSMDDDFGVVKEEIIEDDAHLPCFNGRVVS 76 (107)
Q Consensus 28 iTL~dFK~~l~k-gnY-----ryfFK~~d~dfgvVkEEI~dD~~~LP~~eGkIv~ 76 (107)
.+..||..= .| ++| |||| +.+++|- .++||-.-|-||+
T Consensus 69 Ss~~DF~~D-~KW~dY~~~CDRfyf-Av~~~~p---------~e~lP~~~GLIva 112 (157)
T PF06319_consen 69 SSRADFRSD-RKWPDYLDWCDRFYF-AVPPDFP---------QELLPDETGLIVA 112 (157)
T ss_dssp SSHHHHHHT-TTGGGGGGG-SEEEE-EE-TTS----------GGGS-TTSEEEEE
T ss_pred cCHHHhhcc-CcchHHHHhhceeEE-ecCCCCC---------hhhCCCCccEEEE
Confidence 467888432 44 677 5677 7788872 3468999999987
No 19
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=22.88 E-value=44 Score=21.33 Aligned_cols=13 Identities=31% Similarity=0.749 Sum_probs=11.9
Q ss_pred ccChHHHhhhhcC
Q psy1026 27 KVTLADFKNVLNR 39 (107)
Q Consensus 27 ~iTL~dFK~~l~k 39 (107)
.||+.||+++|.+
T Consensus 29 ~it~~DF~~Al~~ 41 (62)
T PF09336_consen 29 PITMEDFEEALKK 41 (62)
T ss_dssp HBCHHHHHHHHHT
T ss_pred CCCHHHHHHHHHH
Confidence 6999999999987
No 20
>TIGR02913 HAF_rpt probable extracellular repeat, HAF family. The model for this family detects a homology domain of about 40 amino acids. Member proteins always have a least two tandem copies and as many as seven. The spacing between repeats as defined here usually is four residues exactly. This repeat is named for a tripeptide motif HAF found in most members. Some members proteins are found in species with no outer membrane (archaea and Gram-positive bacteria) while others have C-terminal autotransporter domains that suggest that the repeat region is transported across the outer membrane. This domain seems likely to be an extracellular protein repeat.
Probab=22.76 E-value=76 Score=18.67 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=12.8
Q ss_pred CCeEEEEEecCCCCCC
Q psy1026 71 NGRVVSWQYNVPKEET 86 (107)
Q Consensus 71 eGkIv~wl~~~~g~~~ 86 (107)
+|+||+|-.+.+|+.|
T Consensus 7 ~G~VvG~s~~~~g~~h 22 (39)
T TIGR02913 7 DGQVVGYSTTANGETH 22 (39)
T ss_pred CCcEEEEEECCCCCEe
Confidence 5899999888887754
No 21
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=22.60 E-value=1.8e+02 Score=18.98 Aligned_cols=46 Identities=26% Similarity=0.380 Sum_probs=28.2
Q ss_pred CccChHHHhhhhcC--C----CceeeeeecCCCCCceeEeeccCCccc---cccCCeE
Q psy1026 26 DKVTLADFKNVLNR--P----NFKFFFKSMDDDFGVVKEEIIEDDAHL---PCFNGRV 74 (107)
Q Consensus 26 ~~iTL~dFK~~l~k--g----nYryfFK~~d~dfgvVkEEI~dD~~~L---P~~eGkI 74 (107)
..+|++++|+.|.+ | +-|-.+. |.+ |..-+++-+|++.| ++-+|-.
T Consensus 21 ~~~Tv~~lK~kl~~~~G~~~~~mrL~l~--~~~-~~~~~~l~~d~~~L~~y~~~dg~~ 75 (84)
T cd01789 21 RGLTIAELKKKLELVVGTPASSMRLQLF--DGD-DKLVSKLDDDDALLGSYPVDDGCR 75 (84)
T ss_pred CCCcHHHHHHHHHHHHCCCccceEEEEE--cCC-CCeEeecCCCccEeeeccCCCCCE
Confidence 68999999999976 3 3444332 333 33335677777777 4444533
No 22
>COG3422 Uncharacterized conserved protein [Function unknown]
Probab=20.83 E-value=32 Score=22.72 Aligned_cols=17 Identities=18% Similarity=0.464 Sum_probs=11.7
Q ss_pred HhhhhcC-CCceeeeeec
Q psy1026 33 FKNVLNR-PNFKFFFKSM 49 (107)
Q Consensus 33 FK~~l~k-gnYryfFK~~ 49 (107)
|--..++ |.|||.||+-
T Consensus 5 fei~kdk~Ge~rfrlkA~ 22 (59)
T COG3422 5 FEIYKDKAGEYRFRLKAA 22 (59)
T ss_pred EEEEEcCCCcEEEEEEcc
Confidence 3334556 8899999875
No 23
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=20.20 E-value=9.6 Score=26.72 Aligned_cols=73 Identities=18% Similarity=0.357 Sum_probs=46.7
Q ss_pred HHhhhhcC--CCceeeeeec-C---CCCCceeEeeccCCccccccCCeEEEEEecCCCCCCCCCCcccccceeceEEee
Q psy1026 32 DFKNVLNR--PNFKFFFKSM-D---DDFGVVKEEIIEDDAHLPCFNGRVVSWQYNVPKEETPASSKTQTSRLVPYFFLL 104 (107)
Q Consensus 32 dFK~~l~k--gnYryfFK~~-d---~dfgvVkEEI~dD~~~LP~~eGkIv~wl~~~~g~~~~~~~~~~~~~~~~~~~~~ 104 (107)
-|++++.. .+.|+.+-.+ + +|....-.++..|+++.-..|..+++|-...+++..-.-+..=..+..|++.++
T Consensus 5 s~~eAl~~ak~e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l 83 (116)
T cd02991 5 TYSQALNDAKQELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYINTRMLFWACSVAKPEGYRVSQALRERTYPFLAMI 83 (116)
T ss_pred cHHHHHHHHHhhCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHHcCEEEEEEecCChHHHHHHHHhCCCCCCEEEEE
Confidence 34555544 4677776666 2 334556688889999888889999999877765542212222333467887765
Done!