Query psy1026
Match_columns 107
No_of_seqs 109 out of 125
Neff 3.8
Searched_HMMs 29240
Date Fri Aug 16 21:54:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1026.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1026hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pz8_A Segment polarity protei 100.0 1.6E-49 5.5E-54 282.3 8.1 97 1-97 3-102 (106)
2 3pz7_A Dixin; DIX domain, olig 100.0 1.1E-45 3.7E-50 256.6 9.9 84 2-85 7-91 (91)
3 1wsp_A Axin 1 protein; signali 100.0 1.7E-42 5.8E-47 237.2 10.7 80 1-82 2-84 (84)
4 2c7h_A RBBP6, retinoblastoma-b 91.2 0.57 1.9E-05 31.6 5.8 69 2-78 5-80 (86)
5 2v1y_A Phosphatidylinositol-4, 74.3 2.1 7.1E-05 29.8 2.6 41 25-67 37-89 (108)
6 1ip9_A BEM1 protein; ubiquitin 74.3 2.6 9E-05 28.4 3.1 55 3-66 12-70 (85)
7 1wjn_A Tubulin-folding protein 53.5 39 0.0013 21.3 5.6 57 16-77 24-89 (97)
8 2rh2_A Dihydrofolate reductase 32.1 13 0.00045 23.5 0.6 12 69-80 21-32 (62)
9 2pp6_A Gifsy-2 prophage ATP-bi 30.9 24 0.00082 24.5 1.9 16 68-83 83-98 (102)
10 2kaf_A Non-structural protein 23.8 65 0.0022 20.6 2.8 31 4-38 37-67 (67)
11 1hle_B Horse leukocyte elastas 20.5 19 0.00064 19.0 -0.2 16 60-75 14-29 (31)
No 1
>3pz8_A Segment polarity protein dishevelled homolog DVL-; DIX domain, oligomerization, signaling protein; 2.87A {Mus musculus}
Probab=100.00 E-value=1.6e-49 Score=282.27 Aligned_cols=97 Identities=63% Similarity=1.044 Sum_probs=77.6
Q ss_pred CcceEEEEEeCCCCCeeeEeccCCCCccChHHHhhhhcC-C--CceeeeeecCCCCCceeEeeccCCccccccCCeEEEE
Q psy1026 1 MEETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR-P--NFKFFFKSMDDDFGVVKEEIIEDDAHLPCFNGRVVSW 77 (107)
Q Consensus 1 ~~~TkV~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~k-g--nYryfFK~~d~dfgvVkEEI~dD~~~LP~~eGkIv~w 77 (107)
+++|||+||+|||+||||++||+++++|||||||++|+| | |||||||++|+|||+|||||+||+++|||||||||||
T Consensus 3 ~~~TkV~Y~~ddE~tPY~~~Ip~~~~~iTL~dFK~~l~kr~~~nYryfFK~~d~dfgvVkeEI~dD~~~LP~~eGkIv~w 82 (106)
T 3pz8_A 3 HMDTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKEEIFDDNAKLPCFNGRVVSW 82 (106)
T ss_dssp --CEEEEEECTTCSSCEEEEESSCSSSCBHHHHHHTCTTSCGGGBCCEEEEEETTTEEEEEECCCTTCBCCCBTTBEEEE
T ss_pred CCceEEEEECCCCCCceEEEccCCcccccHHHHHHHHhcCCCccceEEEeecCcccCeeeeEecCCcccccccCCEEEEE
Confidence 468999999999999999999999999999999999965 7 9999999999999999999999999999999999999
Q ss_pred EecCCCCCCCCCCcccccce
Q psy1026 78 QYNVPKEETPASSKTQTSRL 97 (107)
Q Consensus 78 l~~~~g~~~~~~~~~~~~~~ 97 (107)
|++++||+++.+|++++++-
T Consensus 83 lv~~e~s~sd~~~~~~~~~~ 102 (106)
T 3pz8_A 83 LVLAEGAHSDAGSQGTDSHT 102 (106)
T ss_dssp CCBC----------------
T ss_pred EEecCCcCCCCCCcCCCCCC
Confidence 99999998888888887764
No 2
>3pz7_A Dixin; DIX domain, oligomerization, signaling protein; 2.44A {Homo sapiens}
Probab=100.00 E-value=1.1e-45 Score=256.60 Aligned_cols=84 Identities=42% Similarity=0.782 Sum_probs=78.6
Q ss_pred cceEEEEEeCCCCCeeeEeccCCCCccChHHHhhhhcC-CCceeeeeecCCCCCceeEeeccCCccccccCCeEEEEEec
Q psy1026 2 EETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR-PNFKFFFKSMDDDFGVVKEEIIEDDAHLPCFNGRVVSWQYN 80 (107)
Q Consensus 2 ~~TkV~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~k-gnYryfFK~~d~dfgvVkEEI~dD~~~LP~~eGkIv~wl~~ 80 (107)
++|||+||+|+|+|||+++||+++++|||||||++|+| ||||||||++|+|||+|||||+||+++||||||||||||++
T Consensus 7 ~~TkV~Y~~d~e~tPY~~~Ip~~~~~iTL~dFK~~l~r~g~yryfFK~~d~dfg~VkeEI~dD~~~LP~~eGkIva~ve~ 86 (91)
T 3pz7_A 7 TCTKVLYFTDRSLTPFMVNIPKRLEEVTLKDFKAAIDREGNHRYHFKAMDPEFGTVKEEIFHDDDAIPGWEGKIVAWVEE 86 (91)
T ss_dssp CCEEEEEECTTCSSCEEEEESSCSTTCBHHHHHHHHCCCSCEEEEEEEEETTTEEEEEEECCTTSBCCCBTTEEEEEEEE
T ss_pred ceeEEEEEcCCCCCceEEECcCCcccccHHHHHHhhCCCCCceEEEeeeCcccCccceEecCCCceeeccCCEEEEEEEc
Confidence 57999999999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy1026 81 VPKEE 85 (107)
Q Consensus 81 ~~g~~ 85 (107)
++|++
T Consensus 87 ~~~~~ 91 (91)
T 3pz7_A 87 DHGEN 91 (91)
T ss_dssp C----
T ss_pred ccCCC
Confidence 99974
No 3
>1wsp_A Axin 1 protein; signaling protein; 2.90A {Rattus norvegicus} SCOP: d.15.1.8 PDB: 2d5g_A
Probab=100.00 E-value=1.7e-42 Score=237.20 Aligned_cols=80 Identities=34% Similarity=0.611 Sum_probs=76.3
Q ss_pred CcceEEEEEeCCCCCeeeEeccCCCCccChHHHhhhhcC-CCceeeeeecCCCC--CceeEeeccCCccccccCCeEEEE
Q psy1026 1 MEETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR-PNFKFFFKSMDDDF--GVVKEEIIEDDAHLPCFNGRVVSW 77 (107)
Q Consensus 1 ~~~TkV~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~k-gnYryfFK~~d~df--gvVkEEI~dD~~~LP~~eGkIv~w 77 (107)
+++|||+||+|+|++||+++|| +++|||||||++|+| ||||||||++|+|| |+|||||+||+++||+||||||||
T Consensus 2 ~~~T~V~Y~~~~e~~Py~~~ip--~~~iTL~dFK~~l~k~g~yrffFK~~~~d~~~~~V~eEI~dD~~~LP~~eGkIva~ 79 (84)
T 1wsp_A 2 CDSIVVAYYFCGEPIPYRTLVR--GRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFEEVREDEAILPVFEEKIIGK 79 (84)
T ss_dssp CCCEEEEEEETTCSSCEEEEET--TSCCBHHHHHHHCCSCSCEEEEEEEECTTSTTSEEEEEECCTTCBCCCBTTBEEEE
T ss_pred CCceEEEEEeCCCCcceEEecC--CCcccHHHHHHhcCCCCceEEEEeecCccccCCceEEEEcCCCccccccCCEEEEE
Confidence 4789999999999999999877 589999999999999 89999999999999 999999999999999999999999
Q ss_pred EecCC
Q psy1026 78 QYNVP 82 (107)
Q Consensus 78 l~~~~ 82 (107)
|++++
T Consensus 80 v~~~d 84 (84)
T 1wsp_A 80 VEKVD 84 (84)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 99875
No 4
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=91.17 E-value=0.57 Score=31.63 Aligned_cols=69 Identities=22% Similarity=0.247 Sum_probs=50.3
Q ss_pred cceEEEEEeCCCCCeeeEeccCCCCccChHHHhhhhcC-CCceeeeeecCCCC------CceeEeeccCCccccccCCeE
Q psy1026 2 EETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR-PNFKFFFKSMDDDF------GVVKEEIIEDDAHLPCFNGRV 74 (107)
Q Consensus 2 ~~TkV~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~k-gnYryfFK~~d~df------gvVkEEI~dD~~~LP~~eGkI 74 (107)
.+..|.|-|-.+.-+-++. ..+..|++.|.|+.+-. ..- | +.|| ..-+||..||++++|-----|
T Consensus 5 ~mS~V~YKFkS~k~~~~v~--fdG~~Isv~dLKr~I~~~~kl----~--~~dfDL~i~na~T~eeY~Dd~~lIprnssVi 76 (86)
T 2c7h_A 5 SMSCVHYKFSSKLNYDTVT--FDGLHISLCDLKKQIMGREKL----K--AADCDLQITNAQTKEEYTDDNALIPKNSSVI 76 (86)
T ss_dssp TBEEEEEEETTCSSEEEEE--ESSSEEEHHHHHHHHHHHHTC----C--TTTEEEEEEESSSCCEECSTTCEEETTCCEE
T ss_pred ceeEEEEEEeecCCcceEE--EcCCEEEHHHHHHHHHHHhCC----C--CCcccEEEeCCCCCCccCCCceEEecCCEEE
Confidence 3568999999888876664 55789999999999855 111 1 2333 225889999999999876666
Q ss_pred EEEE
Q psy1026 75 VSWQ 78 (107)
Q Consensus 75 v~wl 78 (107)
|..+
T Consensus 77 VrRv 80 (86)
T 2c7h_A 77 VRRI 80 (86)
T ss_dssp EEEE
T ss_pred EEec
Confidence 6554
No 5
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=74.26 E-value=2.1 Score=29.77 Aligned_cols=41 Identities=22% Similarity=0.447 Sum_probs=27.1
Q ss_pred CCccChHHHhhhhcC--CCc----------eeeeeecCCCCCceeEeeccCCccc
Q psy1026 25 PDKVTLADFKNVLNR--PNF----------KFFFKSMDDDFGVVKEEIIEDDAHL 67 (107)
Q Consensus 25 ~~~iTL~dFK~~l~k--gnY----------ryfFK~~d~dfgvVkEEI~dD~~~L 67 (107)
...+||.++|..|=+ ..| .|.|-.+..+ ...||+.|++.+|
T Consensus 37 ~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~--~e~Eel~DEsrrL 89 (108)
T 2v1y_A 37 LREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQE--AEREEFFDETRRL 89 (108)
T ss_dssp ETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTT--SCEEEECCTTSBG
T ss_pred eccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCC--ceEEEeEcCceEE
Confidence 468999999995522 222 2333333332 3789999999998
No 6
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=74.26 E-value=2.6 Score=28.44 Aligned_cols=55 Identities=25% Similarity=0.298 Sum_probs=39.2
Q ss_pred ceEEEEEeCCCCCeeeEeccCCCCccChHHHhhhhcC----CCceeeeeecCCCCCceeEeeccCCcc
Q psy1026 3 ETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR----PNFKFFFKSMDDDFGVVKEEIIEDDAH 66 (107)
Q Consensus 3 ~TkV~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~k----gnYryfFK~~d~dfgvVkEEI~dD~~~ 66 (107)
.+||-.|+.|.-+- ..+| ..|+|.|.++.|.. ++..-+.|. |+..|. ||.+|++.
T Consensus 12 ~~KVK~yy~DDIiA--IrvP---~di~~~~L~dKi~~RLk~~~~~l~~yk-de~~g~---~i~sD~dl 70 (85)
T 1ip9_A 12 TTKIKFYYKDDIFA--LMLK---GDTTYKELRSKIAPRIDTDNFKLQTKL-FDGSGE---EIKTDSQV 70 (85)
T ss_dssp CEEEEECBTTCCEE--EEEC---SCCCHHHHHHHHHHHHTSSCEEEEECC-SSSCCS---CCCSHHHH
T ss_pred ceEEEEEecCcEEE--EECC---CCCCHHHHHHHHHHHhcccceEEEEec-CCCCCC---cccCHHHH
Confidence 36888888876544 4444 79999999988744 588888887 444455 88887653
No 7
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=53.45 E-value=39 Score=21.29 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=38.8
Q ss_pred eeeEeccCCCCccChHHHhhhhcC--C----CceeeeeecCCCCCceeEeeccCCccc---cccCCeEEEE
Q psy1026 16 PYLVKLPVSPDKVTLADFKNVLNR--P----NFKFFFKSMDDDFGVVKEEIIEDDAHL---PCFNGRVVSW 77 (107)
Q Consensus 16 PY~~~Ip~~~~~iTL~dFK~~l~k--g----nYryfFK~~d~dfgvVkEEI~dD~~~L---P~~eGkIv~w 77 (107)
....++| ...|.+++|..|.+ | ..|-+++. .+.+....++.+|++.| +.-+|-.+.=
T Consensus 24 ~~e~~l~---~~~TV~~LK~~i~~~~gip~~~q~L~~~~--~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V 89 (97)
T 1wjn_A 24 ILEKQLP---DSMTVQKVKGLLSRLLKVPVSELLLSYES--SKMPGREIELENDLQPLQFYSVENGDCLLV 89 (97)
T ss_dssp CEEEEEE---TTSBHHHHHHHHHTTTTCCTTTCEEEEEC--TTSCSCEEECCCSSSBSGGGTCCTTCEEEE
T ss_pred EEEEECC---CCCCHHHHHHHHHHHHCCChhHeEEEEEc--CCCCceeeccCCCcccHhhcCCCCCCEEEE
Confidence 4444554 57999999999987 3 56666553 33455677788999888 5567766533
No 8
>2rh2_A Dihydrofolate reductase type 2; folate metabolism, plasmid-encoded R67 DHFR, TMP-resistant DHFR, antibiotic resistance, methotrexate resistance; 0.96A {Escherichia coli} SCOP: b.34.4.1 PDB: 1vif_A* 1vie_A 2gqv_A 2rk1_A* 2rk2_A* 3sfm_A 2p4t_A*
Probab=32.05 E-value=13 Score=23.48 Aligned_cols=12 Identities=25% Similarity=0.897 Sum_probs=10.1
Q ss_pred ccCCeEEEEEec
Q psy1026 69 CFNGRVVSWQYN 80 (107)
Q Consensus 69 ~~eGkIv~wl~~ 80 (107)
.|.|+||+|--+
T Consensus 21 awqg~ivgwyct 32 (62)
T 2rh2_A 21 AWQGQIVGWYCT 32 (62)
T ss_dssp CCEEEEEEEECC
T ss_pred cccceEeEEEEc
Confidence 599999999744
No 9
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=30.94 E-value=24 Score=24.48 Aligned_cols=16 Identities=19% Similarity=0.013 Sum_probs=12.2
Q ss_pred cccCCeEEEEEecCCC
Q psy1026 68 PCFNGRVVSWQYNVPK 83 (107)
Q Consensus 68 P~~eGkIv~wl~~~~g 83 (107)
-.+|||++.|||..+|
T Consensus 83 ~~~ngk~~i~LE~~~~ 98 (102)
T 2pp6_A 83 RRFNGKPQLTLEENNG 98 (102)
T ss_dssp EEETTEEEEEEEEC--
T ss_pred EEECCcEEEEEEeecC
Confidence 3589999999997744
No 10
>2kaf_A Non-structural protein 3; SARS-unique domain-C, automation in structure determination, viral protein; NMR {Sars coronavirus}
Probab=23.80 E-value=65 Score=20.61 Aligned_cols=31 Identities=19% Similarity=0.492 Sum_probs=24.1
Q ss_pred eEEEEEeCCCCCeeeEeccCCCCccChHHHhhhhc
Q psy1026 4 TKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLN 38 (107)
Q Consensus 4 TkV~Y~~dde~tPY~~~Ip~~~~~iTL~dFK~~l~ 38 (107)
-||+||.-+.++-|.. .++.+.|...|.+|.
T Consensus 37 dkivyht~~~~~efh~----~GeVl~l~klk~ll~ 67 (67)
T 2kaf_A 37 DKIVYHTLESPVEFHL----DGEVLSLDKLKSLLS 67 (67)
T ss_dssp TEEEEECSSSSCCEEE----TTEECCHHHHHHHHC
T ss_pred CeeeeeecCCceEEEe----eccEeeHHHHHHhhC
Confidence 3789999887777765 367889999998763
No 11
>1hle_B Horse leukocyte elastase inhibitor; hydrolase inhibitor(serine proteinase); 1.95A {Equus caballus} SCOP: e.1.1.1
Probab=20.54 E-value=19 Score=18.99 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=10.9
Q ss_pred eccCCccccccCCeEE
Q psy1026 60 IIEDDAHLPCFNGRVV 75 (107)
Q Consensus 60 I~dD~~~LP~~eGkIv 75 (107)
|.|++...++|-|||+
T Consensus 14 I~~~~t~~iLF~G~v~ 29 (31)
T 1hle_B 14 IRHNPSANILFLGRFS 29 (31)
T ss_dssp EEETTTTEEEEEEEEC
T ss_pred EEECCCCcEEEEEEec
Confidence 5566666777888774
Done!