RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy1026
         (107 letters)



>gnl|CDD|197474 smart00021, DAX, Domain present in Dishevelled and axin.  Domain
          of unknown function.
          Length = 83

 Score =  125 bits (317), Expect = 2e-39
 Identities = 57/78 (73%), Positives = 66/78 (84%), Gaps = 1/78 (1%)

Query: 1  MEETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNRPNFKFFFKSMDDDF-GVVKEE 59
            ETKVIYH+DDEETPYLVK+PV  ++VTL DFK VL + N+K++FKSMDDDF GVVKEE
Sbjct: 1  CSETKVIYHLDDEETPYLVKVPVPAERVTLGDFKEVLTKKNYKYYFKSMDDDFGGVVKEE 60

Query: 60 IIEDDAHLPCFNGRVVSW 77
          I +D A LPCFNGRVVSW
Sbjct: 61 IRDDSARLPCFNGRVVSW 78


>gnl|CDD|189714 pfam00778, DIX, DIX domain.  The DIX domain is present in
          Dishevelled and axin. This domain is involved in homo-
          and hetero-oligomerisation. It is involved in the homo-
          oligomerisation of mouse axin. The axin DIX domain also
          interacts with the dishevelled DIX domain. The DIX
          domain has also been called the DAX domain.
          Length = 81

 Score =  116 bits (294), Expect = 7e-36
 Identities = 42/76 (55%), Positives = 57/76 (75%), Gaps = 2/76 (2%)

Query: 4  TKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNRP-NFKFFFKSMDDDFG-VVKEEII 61
          TKV+Y++DDE TPY +K+P  P ++TL DFK  L R  N+K+FFK++D DFG VVKEE+ 
Sbjct: 1  TKVVYYLDDEPTPYRIKIPGPPGEITLGDFKAALTRKGNYKYFFKALDPDFGCVVKEEVT 60

Query: 62 EDDAHLPCFNGRVVSW 77
          +D A LP F G++V W
Sbjct: 61 DDSAKLPLFEGKIVGW 76


>gnl|CDD|217363 pfam03094, Mlo, Mlo family.  A family of plant integral membrane
           proteins, first discovered in barley. Mutants lacking
           wild-type Mlo proteins show broad spectrum resistance to
           the powdery mildew fungus, and dysregulated cell death
           control, with spontaneous cell death in response to
           developmental or abiotic stimuli. Thus wild-type Mlo
           proteins are thought to be inhibitors of cell death
           whose deficiency lowers the threshold required to
           trigger the cascade of events that result in plant cell
           death. Mlo proteins are localised in the plasma membrane
           and possess seven transmembrane regions; thus the Mlo
           family is the only major higher plant family to possess
           7 transmembrane domains. It has been suggested that Mlo
           proteins function as G-protein coupled receptors in
           plants; however the molecular and biological functions
           of Mlo proteins remain to be fully determined.
          Length = 481

 Score = 27.0 bits (60), Expect = 2.3
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 6/37 (16%)

Query: 26  DKVTL-ADFKNVLNRPNFKFFF-----KSMDDDFGVV 56
           D +TL   F      PN KF F     +S++DDF VV
Sbjct: 229 DYLTLRHGFIMAHLAPNPKFNFHKYIKRSLEDDFKVV 265


>gnl|CDD|99866 cd06113, citrate_synt_like_1_2, Citrate synthase (CS) catalyzes
          the condensation of acetyl coenzyme A (AcCoA) and
          oxalacetate (OAA) to form citrate and coenzyme A (CoA),
          the first step in the oxidative citric acid cycle (TCA
          or Krebs cycle). Peroxisomal CS is involved in the
          glyoxylate cycle. This group also includes CS proteins
          which functions as a 2-methylcitrate synthase (2MCS).
          2MCS catalyzes the condensation of propionyl-CoA
          (PrCoA) and OAA to form 2-methylcitrate and CoA during
          propionate metabolism. This group contains proteins
          which functions exclusively as either a CS or a 2MCS,
          as well as those with relaxed specificity which have
          dual functions as both a CS and a 2MCS. The overall CS
          reaction is thought to proceed through three partial
          reactions and involves both closed and open
          conformational forms of the enzyme: a) a carbanion or
          equivalent is generated from AcCoA by base abstraction
          of a proton, b) nucleophilic attack of this carbanion
          on OAA to generate citryl-CoA, and c) hydrolysis of
          citryl-CoA to produce citrate and CoA. CSs are found in
          two structural types: type I (homodimeric) and type II
          CSs (homohexameric). Type II CSs are unique to
          gram-negative bacteria. Type I CSs are found in
          eukarya, gram-positive bacteria, archaea, and in some
          gram-negative bacteria. Type I CS is active as a
          homodimer, both subunits participating in the active
          site. Type II CS is a hexamer of identical subunits
          (approximated as a trimer of dimers). Some type II CSs
          are strongly and specifically inhibited by NADH through
          an allosteric mechanism. This subgroup includes both
          gram-positive and gram-negative bacteria.
          Length = 406

 Score = 26.8 bits (60), Expect = 2.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 13 EETPYLVKLPVSPDKVTLADFKNVLN 38
          EET YL+     P+K  L +F  +L+
Sbjct: 61 EETAYLLLFGYLPNKEELEEFCEILS 86


>gnl|CDD|234885 PRK00994, PRK00994, F420-dependent methylenetetrahydromethanopterin
           dehydrogenase; Provisional.
          Length = 277

 Score = 26.1 bits (58), Expect = 3.7
 Identities = 10/32 (31%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 5   KVIYHIDDEETPYLVKLPVSPDK-VTLADFKN 35
           KVI  + + +   L K+ ++ +K V  A F N
Sbjct: 159 KVIDQVKEGKEIELPKIVITAEKAVEAAGFSN 190


>gnl|CDD|227299 COG4964, CpaC, Flp pilus assembly protein, secretin CpaC
           [Intracellular trafficking and secretion].
          Length = 455

 Score = 26.2 bits (58), Expect = 4.1
 Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 2/32 (6%)

Query: 15  TPYLVKLPVSP-DKVTLADFKNVLNRPNFKFF 45
           TPYLVK PV+P       D     + P   F 
Sbjct: 397 TPYLVK-PVAPGQLPAPPDDFTPASDPALYFL 427


>gnl|CDD|224334 COG1416, COG1416, Uncharacterized conserved protein [Function
          unknown].
          Length = 112

 Score = 25.0 bits (55), Expect = 7.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 1  MEETKVIYHIDDEE 14
          M   KV+YH+D+E 
Sbjct: 1  MSRMKVVYHVDEES 14


>gnl|CDD|237027 PRK12266, glpD, glycerol-3-phosphate dehydrogenase; Reviewed.
          Length = 508

 Score = 25.1 bits (56), Expect = 8.1
 Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 7/27 (25%)

Query: 9   HIDDEETPYLVKL-------PVSPDKV 28
            I +EE  YL K+        ++P  V
Sbjct: 289 AISEEEIDYLCKVVNRYFKKQLTPADV 315


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.321    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0682    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,695,932
Number of extensions: 490835
Number of successful extensions: 404
Number of sequences better than 10.0: 1
Number of HSP's gapped: 401
Number of HSP's successfully gapped: 27
Length of query: 107
Length of database: 10,937,602
Length adjustment: 72
Effective length of query: 35
Effective length of database: 7,744,114
Effective search space: 271043990
Effective search space used: 271043990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.3 bits)