RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1026
(107 letters)
>3pz7_A Dixin; DIX domain, oligomerization, signaling protein; 2.44A
{Homo sapiens}
Length = 91
Score = 109 bits (273), Expect = 5e-33
Identities = 34/77 (44%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 2 EETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNRP-NFKFFFKSMDDDFGVVKEEI 60
TKV+Y D TP++V +P ++VTL DFK ++R N ++ FK+MD +FG VKEEI
Sbjct: 7 TCTKVLYFTDRSLTPFMVNIPKRLEEVTLKDFKAAIDREGNHRYHFKAMDPEFGTVKEEI 66
Query: 61 IEDDAHLPCFNGRVVSW 77
DD +P + G++V+W
Sbjct: 67 FHDDDAIPGWEGKIVAW 83
>3pz8_A Segment polarity protein dishevelled homolog DVL-; DIX domain,
oligomerization, signaling protein; 2.87A {Mus musculus}
Length = 106
Score = 109 bits (273), Expect = 7e-33
Identities = 60/102 (58%), Positives = 74/102 (72%), Gaps = 4/102 (3%)
Query: 2 EETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR---PNFKFFFKSMDDDFGVVKE 58
+TK+IYH+D+EETP LVKLPV+P++VTLADFKNVL+ +KFFFKSMD DFGVVKE
Sbjct: 4 MDTKIIYHMDEEETPDLVKLPVAPERVTLADFKNVLSNRPVHAYKFFFKSMDQDFGVVKE 63
Query: 59 EIIEDDAHLPCFNGRVVSWQYNVPKEET-PASSKTQTSRLVP 99
EI +D+A LPCFNGRVVSW + S T + +P
Sbjct: 64 EIFDDNAKLPCFNGRVVSWLVLAEGAHSDAGSQGTDSHTDLP 105
>1wsp_A Axin 1 protein; signaling protein; 2.90A {Rattus norvegicus}
SCOP: d.15.1.8 PDB: 2d5g_A
Length = 84
Score = 96.1 bits (239), Expect = 8e-28
Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 2 EETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNRP-NFKFFFKSMDDDF--GVVKE 58
+ V Y+ E PY + VTL FK +L + +++++FK + D+F GVV E
Sbjct: 3 DSIVVAYYFCGEPIPYRTLVR--GRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFE 60
Query: 59 EIIEDDAHLPCFNGRVVSW 77
E+ ED+A LP F +++
Sbjct: 61 EVREDEAILPVFEEKIIGK 79
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 5e-04
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 7/110 (6%)
Query: 2 EETKVIYHIDDEE--TPYLVKLPVSPDKVTLADFKNVLNRPNFKFF---FKSMDDDFGVV 56
EE I D T L +S + + F + R N+KF K+ ++
Sbjct: 49 EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108
Query: 57 KEEIIEDDAHLPCFNGRVVSWQYNVPKEETPASSKTQTSRLVPYFFLLFH 106
IE +N V +YNV + + + L P +L
Sbjct: 109 TRMYIE--QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
>3enp_A TP53RK-binding protein; keops complex telomere kinase regulator,
nucleus, hydrolase; 2.48A {Homo sapiens}
Length = 177
Score = 27.2 bits (60), Expect = 0.93
Identities = 12/50 (24%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 19 VKLPVSPD-KVTLADFKNVLNRPNFKFFFKSMDDDFGVVKEEIIEDDAHL 67
+L + P+ +VTL FK+V N + + D ++ +I D +
Sbjct: 7 HQLDLFPECRVTLLLFKDVKNAGDLRRKAMEGTIDGSLINPTVIVDPFQI 56
>3haz_A Proline dehydrogenase; proline utilization A, PUTA, flavoenzyme,
1-pyrroline-5-carboxylate dehydrogenase, oxidoreductase;
HET: FAD NAD; 2.10A {Bradyrhizobium japonicum usda 110}
Length = 1001
Score = 26.3 bits (58), Expect = 2.5
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 13/54 (24%)
Query: 3 ETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNRPNFKFFFKSMDDDFGVV 56
+ + +D EE L ++L L P+ K + D FG+
Sbjct: 272 AHDLNFTVDAEEADRLE--------LSLDVIAATLADPSLKGW-----DGFGLA 312
>1nd6_A Prostatic acid phosphatase; PAP, prostate, phosphate, inhibi
hydrolase; HET: NAG MAN 1PE; 2.40A {Homo sapiens} SCOP:
c.60.1.2 PDB: 1nd5_A* 2hpa_A* 1cvi_A* 1rpa_A* 1rpt_A*
2l3h_A 2l77_A 2l79_A
Length = 354
Score = 25.5 bits (55), Expect = 4.6
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 5 KVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNR 39
++ Y + + PY + LP L F ++
Sbjct: 296 EMYYRNETQHEPYPLMLPGCSPSCPLERFAELVGP 330
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 25.0 bits (54), Expect = 5.0
Identities = 7/26 (26%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
Query: 54 GVVKEEIIEDDAH--LPCFN-GRVVS 76
V +I+E + + C G V+S
Sbjct: 28 KVYPPKIVERFSEGDVVCALCGLVLS 53
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.4 bits (55), Expect = 5.6
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 10/72 (13%)
Query: 33 FKNVLNRPNFKFFFKSMDDDFG-----VVKEEIIEDDAHLPCFNGRVVSWQYNVPKEETP 87
++V NR + D +G +V + H G+ + Y+ ET
Sbjct: 1642 AQDVWNRAD-----NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 88 ASSKTQTSRLVP 99
K +T ++
Sbjct: 1697 VDGKLKTEKIFK 1708
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.423
Gapped
Lambda K H
0.267 0.0625 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,721,400
Number of extensions: 92920
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 158
Number of HSP's successfully gapped: 16
Length of query: 107
Length of database: 6,701,793
Length adjustment: 72
Effective length of query: 35
Effective length of database: 4,691,481
Effective search space: 164201835
Effective search space used: 164201835
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.6 bits)