RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1026
         (107 letters)



>d1wspa1 d.15.1.8 (A:750-832) Axin 1 {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 83

 Score =  100 bits (251), Expect = 4e-30
 Identities = 26/79 (32%), Positives = 43/79 (54%), Gaps = 5/79 (6%)

Query: 2  EETKVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLNRP-NFKFFFKSMDDDF--GVVKE 58
          +   V Y+   E  PY   +      VTL  FK +L +  +++++FK + D+F  GVV E
Sbjct: 2  DSIVVAYYFCGEPIPYRTLVR--GRAVTLGQFKELLTKKGSYRYYFKKVSDEFDCGVVFE 59

Query: 59 EIIEDDAHLPCFNGRVVSW 77
          E+ ED+A LP F  +++  
Sbjct: 60 EVREDEAILPVFEEKIIGK 78


>d1nd6a_ c.60.1.2 (A:) Prostatic acid phosphatase {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 342

 Score = 25.2 bits (54), Expect = 1.7
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 5   KVIYHIDDEETPYLVKLPVSPDKVTLADFKNVLN 38
           ++ Y  + +  PY + LP       L  F  ++ 
Sbjct: 296 EMYYRNETQHEPYPLMLPGCSPSCPLERFAELVG 329


>d2duca1 b.47.1.4 (A:2-301) Coronavirus main proteinase (3Cl-pro,
           putative coronavirus nsp2) {SARS coronavirus [TaxId:
           227859]}
          Length = 300

 Score = 24.8 bits (54), Expect = 2.8
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 23  VSPDKVTLADFKNVLNRPNFKFFFKSMDDDF-------GVVKEEIIE--DDAHLPCFNGR 73
           ++    TL DF  V  + N++   +   D         G+   ++     +      NGR
Sbjct: 219 LNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGR 278

Query: 74  VVSWQYNVPKEETPASSKTQTS 95
            +     +  E TP     Q S
Sbjct: 279 TILGSTILEDEFTPFDVVRQCS 300


>d2bgxa2 d.118.1.1 (A:7-179) Probable N-acetylmuramoyl-L-alanine
           amidase YbjR, N-terminal domain {Escherichia coli
           [TaxId: 562]}
          Length = 173

 Score = 23.6 bits (50), Expect = 6.6
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 70  FNGRVVSWQYNVPKEETPASSKTQTSRLVPYFFLLFH 106
              + VS  Y VP      + K +  +LVP   L +H
Sbjct: 42  LTDKQVSSHYLVPAVPPRYNGKPRIWQLVPEQELAWH 78


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.423 

Gapped
Lambda     K      H
   0.267   0.0631    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 432,093
Number of extensions: 19191
Number of successful extensions: 33
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 6
Length of query: 107
Length of database: 2,407,596
Length adjustment: 67
Effective length of query: 40
Effective length of database: 1,487,686
Effective search space: 59507440
Effective search space used: 59507440
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.1 bits)