BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10264
(426 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 45/113 (39%), Gaps = 26/113 (23%)
Query: 79 SVRRNILALNYVCNVSRNTTNPAHTVLFHKGPRIQC----SKYTKPLRFRVEDLPGVSEL 134
S +++L+LN N+ +T + PRI+ S K + +V L + EL
Sbjct: 396 SWTKSLLSLNMSSNILTDT------IFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQEL 449
Query: 135 NV----------------NSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
NV S+ K +L PW PR DYL KN KE+
Sbjct: 450 NVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 502
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 32.0 bits (71), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 123 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 158
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 217 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 252
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 300 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 335
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 394 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 429
>pdb|3V44|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Zebrafish
Tlr5
Length = 407
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 346 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 381
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 496 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 531
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 517 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 552
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 224 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 259
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 225 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 260
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 223 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 258
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 224 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 259
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 225 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 260
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 522 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 557
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 18/36 (50%)
Query: 136 VNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKEE 171
+ S+ K +L PW PR DYL KN KE+
Sbjct: 496 LTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQ 531
>pdb|1MU2|A Chain A, Crystal Structure Of Hiv-2 Reverse Transcriptase
Length = 555
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 270 NFIICSDSKSSLQALQNVYHASPLVCNIISTIQDIRELGTRVSFFWIPSHLGIRENENVD 329
N I+ S + A Q S +V II + I++ V+ W+P+H GI N+ VD
Sbjct: 493 NIIVDSQYVMGIVASQPTESESKIVNQIIEEM--IKKEAIYVA--WVPAHKGIGGNQEVD 548
Query: 330 H 330
H
Sbjct: 549 H 549
>pdb|2WEI|A Chain A, Crystal Structure Of The Kinase Domain Of Cryptosporidium
Parvum Calcium Dependent Protein Kinase In Complex With
3- Mb-Pp1
Length = 287
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 189 CFTDGSKTSDHTGAAYIIGDEVCSMKLNPVCSIFTAELV 227
CF +K D G AY I EV + C +++A ++
Sbjct: 173 CFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVI 211
>pdb|3DFA|A Chain A, Crystal Structure Of Kinase Domain Of Calcium-dependent
Protein Kinase Cgd3_920 From Cryptosporidium Parvum
Length = 286
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 189 CFTDGSKTSDHTGAAYIIGDEVCSMKLNPVCSIFTAELV 227
CF +K D G AY I EV + C +++A ++
Sbjct: 173 CFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVI 211
>pdb|2E4L|A Chain A, Thermodynamic And Structural Analysis Of Thermolabile
Rnase Hi From Shewanella Oneidensis Mr-1
Length = 158
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 22/114 (19%)
Query: 241 RTELISELVAIEKCLEKIKDLIRTELILQNFIICSDSKSSLQALQNVYHASPLVCNIIST 300
R EL++ +VA+E E K I+ SDS+ Q + H + S
Sbjct: 48 RMELLAPIVALEALKEPCK-----------IILTSDSQYMRQGIMTWIHGWKKKGWMTSN 96
Query: 301 IQDIRELGT-----------RVSFFWIPSHLGIRENENVDHAARHCNDVPITKV 343
++ + ++ + W+ H G ENE D AR + T++
Sbjct: 97 RTPVKNVDLWKRLDKAAQLHQIDWRWVKGHAGHAENERCDQLARAAAEANPTQI 150
>pdb|3IGO|A Chain A, Crystal Structure Of Cryptosporidium Parvum Cdpk1,
Cgd3_920
pdb|3MWU|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Rm-1-95
pdb|3NCG|A Chain A, Activated Calcium-Dependent Protein Kinase 1 From
Cryptosporidium Parvum (Cpcdpk1) In Complex With Bumped
Kinase Inhibitor Nm-Pp1
Length = 486
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 189 CFTDGSKTSDHTGAAYIIGDEVCSMKLNPVCSIFTAELV 227
CF +K D G AY I EV + C +++A ++
Sbjct: 173 CFQQNTKMKDRIGTAYYIAPEVLRGTYDEKCDVWSAGVI 211
>pdb|2GD7|A Chain A, The Structure Of The Cyclin T-Binding Domain Of Hexim1
Reveals The Molecular Basis For Regulation Of
Transcription Elongation
pdb|2GD7|B Chain B, The Structure Of The Cyclin T-Binding Domain Of Hexim1
Reveals The Molecular Basis For Regulation Of
Transcription Elongation
Length = 107
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 20/27 (74%)
Query: 234 EKIKDLIRTELISELVAIEKCLEKIKD 260
E ++++ + ELI E + +EKCL +++D
Sbjct: 25 ESLQNMSKQELIKEYLELEKCLSRMED 51
>pdb|2BPA|1 Chain 1, Atomic Structure Of Single-Stranded Dna Bacteriophage
Phix174 And Its Functional Implications
pdb|1AL0|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 348 DYKIQFKKIQLNEWNHSWRDNSTTGQKLTMLRDTAMT 384
DY F+ +QL +WN + N T + L RD+ MT
Sbjct: 389 DYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMT 425
>pdb|1CD3|F Chain F, Procapsid Of Bacteriophage Phix174
Length = 426
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 348 DYKIQFKKIQLNEWNHSWRDNSTTGQKLTMLRDTAMT 384
DY F+ +QL +WN + N T + L RD+ MT
Sbjct: 389 DYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMT 425
>pdb|1KVP|A Chain A, Structural Analysis Of The Spiroplasma Virus, Spv4,
Implications For Evolutionary Variation To Obtain Host
Diversity Among The Microviridae, Electron Microscopy,
Alpha Carbons Only
Length = 497
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 348 DYKIQFKKIQLNEWNHSWRDNSTTGQKLTMLRDTAMT 384
DY F+ +QL +WN + N T + L RD+ MT
Sbjct: 460 DYDQCFQSVQLLQWNSQVKFNVTVYRNLPTTRDSIMT 496
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,070,663
Number of Sequences: 62578
Number of extensions: 470703
Number of successful extensions: 1155
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1131
Number of HSP's gapped (non-prelim): 28
length of query: 426
length of database: 14,973,337
effective HSP length: 102
effective length of query: 324
effective length of database: 8,590,381
effective search space: 2783283444
effective search space used: 2783283444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)