BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10264
(426 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P03371|POL_EIAVY Pol polyprotein OS=Equine infectious anemia virus (strain Wyoming)
GN=pol PE=3 SV=1
Length = 1145
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 59/145 (40%), Gaps = 33/145 (22%)
Query: 190 FTDGSKTSDHTGAAYIIGDEVCSMK-LNPVCSIFTAELVAIEKCLEKIKDLIRTELISEL 248
+TDG K + AAY+ + K L PV AE +AI+ LE +D + ++ +
Sbjct: 623 YTDGGKQNGEGIAAYVTSNGRTKQKRLGPVTHQV-AERMAIQMALEDTRD----KQVNIV 677
Query: 249 VAIEKCLEKIKDLIRTELILQNFIICSDSKSSLQALQNVYHASPLVCNIISTIQDIRELG 308
C + I + + L+ QN + IQ+IRE
Sbjct: 678 TDSYYCWKNITEGL-----------------GLEGPQNPWWP---------IIQNIREKE 711
Query: 309 TRVSFFWIPSHLGIRENENVDHAAR 333
V F W+P H GI N+ D AA+
Sbjct: 712 I-VYFAWVPGHKGIYGNQLADEAAK 735
>sp|P33459|POL_CAEVC Pol polyprotein OS=Caprine arthritis encephalitis virus (strain
Cork) GN=pol PE=3 SV=1
Length = 1109
Score = 35.8 bits (81), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Query: 247 ELVAIEKCLEKIKDLIRTELILQNFIICSDSKSSLQALQNVYHASPLVCNIISTIQDIRE 306
EL AIE+ L++ Q + +DS+ + + L + + I + I +I
Sbjct: 616 ELRAIEEALKQGP---------QTMNLVTDSRYAFEFLLRNWDEEVIKNPIQARIMEIAH 666
Query: 307 LGTRVSFFWIPSHLGIRENENVD 329
R+ W+P H GI +NE +D
Sbjct: 667 KKDRIGVHWVPGHKGIPQNEEID 689
>sp|Q79666|POL_HV1MV Gag-Pol polyprotein OS=Human immunodeficiency virus type 1 group O
(isolate MVP5180) GN=gag-pol PE=3 SV=3
Length = 1446
Score = 35.4 bits (80), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 241 RTELISELVAIEKCLEKIKDLIRTELILQNFIICSDSKSSLQALQNVYHASPLVCNIIST 300
+ EL++ L+A++ E++ + ++ +L II S S SP+V II
Sbjct: 1064 KAELMAVLIALQDSKEQVNIVTDSQYVL--GIISSQPTQS---------DSPIVQQIIEE 1112
Query: 301 IQDIRELGTRVSFFWIPSHLGIRENENVD 329
+ RV W+P+H GI NE +D
Sbjct: 1113 LTKKE----RVYLTWVPAHKGIGGNEKID 1137
>sp|Q90Z16|OPTN_CHICK Optineurin OS=Gallus gallus GN=OPTN PE=1 SV=1
Length = 556
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 65/140 (46%), Gaps = 22/140 (15%)
Query: 189 CFTDGSKTSDHTGAAYIIGDEVCSMKLNPVCSIF-----------TAELVA---IEKC-- 232
C G++T+ ++ IG EV S+K +C++F AEL+ EKC
Sbjct: 257 CLESGTQTNQEEESSEAIGSEVESLK-KQICALFKELQEAHEKLKEAELIQKKLQEKCQT 315
Query: 233 LEKIKDLIRTEL--ISELVAIEKCLEKIKDLIRTELILQNFIICSDSKSSLQALQNVYHA 290
LEK+ TEL +L+ K LE + ++ E+ L+ D K+ +LQ+ Y+
Sbjct: 316 LEKVNSAAATELEEKQQLIYTIKKLELQVESVQAEVKLEQAKT-QDEKTRYSSLQDAYN- 373
Query: 291 SPLVCNIISTIQDIRELGTR 310
L+ + ++ I E+ +
Sbjct: 374 -KLLAELTEAMKTISEMKVK 392
>sp|P16425|Y2R2_DROME Putative 115 kDa protein in type-1 retrotransposable element R1DM
OS=Drosophila melanogaster PE=4 SV=1
Length = 1021
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 343 VCIS-DDYKIQFKKIQLNEWNHSWRDNSTTGQKL-TMLRDTAMTFRLPKYAFRMTIKYNL 400
C+S + K + ++ + W + W D+S G+ + + +R P + F M + L
Sbjct: 875 ACLSWEQRKTRLEECLIQSWQNRWDDDSEPGRVTHRFIPYVTLAYRDPSFGFSMRTSFLL 934
Query: 401 RKFNKMNGIIHG 412
N +HG
Sbjct: 935 TGHGSFNAFLHG 946
>sp|Q081L4|RNH_SHEFN Ribonuclease H OS=Shewanella frigidimarina (strain NCIMB 400)
GN=rnhA PE=3 SV=1
Length = 157
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 44/114 (38%), Gaps = 22/114 (19%)
Query: 241 RTELISELVAIEKCLEKIKDLIRTELILQNFIICSDSKSSLQALQNVYHASPLVCNIIST 300
R EL++ ++A+E E N I+ SDS+ Q + H I ST
Sbjct: 48 RMELLAPIIALETLYEPC-----------NIILTSDSQYMRQGIMTWIHGWKKKGWITST 96
Query: 301 IQDIRELGT-----------RVSFFWIPSHLGIRENENVDHAARHCNDVPITKV 343
Q ++ + ++ + W+ H G ENE D AR + +V
Sbjct: 97 KQPVKNVDLWKRLDAVSQLHKIDWHWVKGHAGHIENERCDVLARKAAEAKPQQV 150
>sp|Q05057|POLG_PYFV1 Genome polyprotein OS=Parsnip yellow fleck virus (isolate P-121) PE=1
SV=1
Length = 3027
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 51/109 (46%), Gaps = 22/109 (20%)
Query: 63 TSPIVSILAESGIPPLSVRRNILALNYVCNVSRNTTNPAHTVLFHKGPRIQCSKYTKPLR 122
TSP V+ + +G PP+S + ++ + + P +++ KG + Y+KP
Sbjct: 962 TSPSVTQITYTGHPPMSSQTGVVCIKF----------PKNSI---KG---KLKVYSKPGE 1005
Query: 123 -FRVEDLPGVSELNVNSIAKYYLRFAPWQVETPRTDYLVTSAKKNLSKE 170
F L GV L V+ + KY P+Q P D +T +K++ KE
Sbjct: 1006 NFEFRHLGGVPSLQVSQMVKYK---KPFQNSVP--DVFITPSKESSKKE 1049
>sp|Q27YE1|L_IPPYV RNA-directed RNA polymerase L OS=Ippy virus (isolate Rat/Central
African Republic/Dak An B 188 d/1970) GN=L PE=3 SV=1
Length = 2208
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 13/82 (15%)
Query: 209 EVCSMKLNP---VCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEKIKDLIRTE 265
E+CS +P C IF+ E + K+ D + T L+ +V +E L IK L +
Sbjct: 566 EICSFYADPKRYFCPIFS------ENVITKVIDTMMTWLMG-IVELEDSLRDIKKLTKMI 618
Query: 266 LILQNFIICSDSKSSLQALQNV 287
L++ I+C SK S + LQN+
Sbjct: 619 LLV---ILCQPSKRSQKLLQNL 637
>sp|P15833|POL_HV2D2 Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate D205) GN=gag-pol PE=3 SV=3
Length = 1465
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 270 NFIICSDSKSSLQALQNVYHASPLVCNIISTIQDIRELGTRVSFFWIPSHLGIRENENVD 329
N I+ S + A Q SP+V II + I++ V W+P+H G+ N+ VD
Sbjct: 1103 NIIVDSQYVMGIIAAQPTETESPIVAKIIEEM--IKKEAVYVG--WVPAHKGLGGNQEVD 1158
Query: 330 H 330
H
Sbjct: 1159 H 1159
>sp|Q54FC8|PKS39_DICDI Probable polyketide synthase 39 OS=Dictyostelium discoideum
GN=pks39 PE=3 SV=1
Length = 3108
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 169 KEEVVQHFLKFKDQHKFDTLCFTDGSKTSDHTGAAYIIGDEVCSMKLN---PVCSIFTA 224
KE+++ +K D D C GS +S HT + +I DEVCS+ ++ P +IF+
Sbjct: 730 KEDLLNEIIK--DFKSNDIFCAMLGSLSSFHTSSQQMIKDEVCSLNISSKQPSIAIFST 786
>sp|P59434|RNH_BUCBP Ribonuclease H OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=rnhA PE=3 SV=1
Length = 153
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 310 RVSFFWIPSHLGIRENENVDHAARHCNDVPITK 342
+V++ WI SH G ++NE DH AR P K
Sbjct: 115 QVTWKWIKSHSGNKKNEQCDHLARESAKFPTLK 147
>sp|Q89928|POL_HV2EH Gag-Pol polyprotein OS=Human immunodeficiency virus type 2 subtype B
(isolate EHO) GN=gag-pol PE=3 SV=3
Length = 1464
Score = 33.1 bits (74), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 33/150 (22%), Positives = 62/150 (41%), Gaps = 24/150 (16%)
Query: 270 NFIICSDSKSSLQALQNVYHASPLVCNIISTIQDIRELGTRVSFFWIPSHLGIRENENVD 329
N I+ S + A Q SP+V II + I++ ++ W+P+H G+ N+ VD
Sbjct: 1102 NIIVDSQYVMGIVAAQPTETESPIVREIIEEM--IKK--EKIYVGWVPAHKGLGGNQEVD 1157
Query: 330 HAARHCNDVPITKVCISDDYKIQFKKIQLNEWNHSWRDNSTTGQKLTMLRDTAMTFRLPK 389
H I ++ +KI+ + H N+ +++ F +P+
Sbjct: 1158 HLVSQG----IRQILF-------LEKIEPAQEEHEKYHNN--------VKELVHKFGIPQ 1198
Query: 390 YAFRMTIKYNLRKFNKMNGIIHGEITVQLG 419
R + + K + IHG++ +LG
Sbjct: 1199 LVARQIVN-SCDKCQQKGEAIHGQVNSELG 1227
>sp|Q9ASQ6|Y1972_ARATH Probable LRR receptor-like serine/threonine-protein kinase
At1g29720 OS=Arabidopsis thaliana GN=RFK1 PE=2 SV=3
Length = 1019
Score = 32.0 bits (71), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 369 STTGQKLTMLRDTAMTFRLPKYAFRMT-IKYNLRKFNKMNGIIHG 412
S+ G K +LR+ ++ +P Y + +T +K FNK+NGI+ G
Sbjct: 282 SSKGLKRLILRNVGLSGPIPSYIWNLTDLKILDLSFNKLNGIVQG 326
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,571,739
Number of Sequences: 539616
Number of extensions: 6047354
Number of successful extensions: 14130
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 14125
Number of HSP's gapped (non-prelim): 23
length of query: 426
length of database: 191,569,459
effective HSP length: 120
effective length of query: 306
effective length of database: 126,815,539
effective search space: 38805554934
effective search space used: 38805554934
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)