Query psy10264
Match_columns 426
No_of_seqs 299 out of 1779
Neff 7.3
Searched_HMMs 29240
Date Fri Aug 16 22:03:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10264.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10264hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qkb_A Ribonuclease H1, HS-RNA 99.9 1.7E-22 6E-27 179.3 10.4 127 185-339 6-152 (154)
2 3qio_A GAG-POL polyprotein; RN 99.9 8.8E-22 3E-26 174.2 10.8 122 185-338 11-147 (150)
3 2kq2_A Ribonuclease H-related 99.9 1.9E-22 6.4E-27 177.9 5.1 127 184-341 4-140 (147)
4 3h08_A RNH (ribonuclease H); R 99.8 7.4E-22 2.5E-26 173.6 5.6 123 185-338 3-144 (146)
5 3p1g_A Xenotropic murine leuke 99.8 4.2E-21 1.4E-25 172.4 8.1 124 185-338 22-156 (165)
6 1jl1_A Ribonuclease HI; RNAse 99.8 3.4E-21 1.2E-25 171.3 6.7 125 186-341 4-146 (155)
7 2e4l_A Ribonuclease HI, RNAse 99.8 7.5E-21 2.5E-25 169.6 6.7 123 185-338 5-145 (158)
8 1ril_A Ribonuclease H; hydrola 99.8 1.5E-20 5E-25 169.1 5.0 125 185-340 7-150 (166)
9 3hst_B Protein RV2228C/MT2287; 99.8 8.6E-19 3E-23 152.3 10.5 120 186-337 3-132 (141)
10 2lsn_A Reverse transcriptase; 99.8 2.4E-19 8.2E-24 160.8 5.9 125 185-337 6-162 (165)
11 3u3g_D Ribonuclease H, RNAse H 99.8 1.1E-18 3.8E-23 151.0 9.3 124 186-337 3-136 (140)
12 2ehg_A Ribonuclease HI; RNAse 99.7 6.3E-18 2.2E-22 148.7 9.6 119 187-337 2-133 (149)
13 1mu2_A HIV-2 RT; HIV-2 reverse 99.7 5.8E-18 2E-22 179.3 9.4 116 185-336 435-555 (555)
14 2zd1_A Reverse transcriptase/r 99.7 5E-18 1.7E-22 179.9 7.6 115 185-335 438-557 (557)
15 1zbf_A Ribonuclease H-related 99.1 2.9E-11 1E-15 105.4 3.8 116 185-329 10-138 (142)
16 4htu_A Ribonuclease H, RNAse H 98.8 8.5E-09 2.9E-13 88.6 7.6 75 184-287 3-83 (134)
17 1rw3_A POL polyprotein; RNA an 79.7 0.48 1.6E-05 48.1 0.9 71 186-287 346-428 (455)
18 2zd1_B P51 RT; P51/P66, hetero 62.1 16 0.00055 36.5 7.4 75 186-287 324-405 (428)
19 2zd1_A Reverse transcriptase/r 21.1 2.7E+02 0.0092 28.4 8.7 51 186-239 326-383 (557)
No 1
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A*
Probab=99.87 E-value=1.7e-22 Score=179.31 Aligned_cols=127 Identities=20% Similarity=0.298 Sum_probs=97.5
Q ss_pred CCceeeccCCCCCC-----cceEEEEEcce---eeeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy10264 185 FDTLCFTDGSKTSD-----HTGAAYIIGDE---VCSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLE 256 (426)
Q Consensus 185 ~~~~iytDgS~~~~-----~~G~g~v~~~~---~~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~ 256 (426)
..+.||||||+..+ .+|+|+++.+. ..+..++..+|++.||+.|++.||+.+.....
T Consensus 6 ~~~~iytDGs~~~n~~~~~~aG~Gvv~~~~~~~~~~~~l~~~~tn~~aEl~A~~~aL~~~~~~~~--------------- 70 (154)
T 2qkb_A 6 DFVVVYTDGCCSSNGRRRPRAGIGVYWGPGHPLNVGIRLPGRQTNQRAEIHAACKAIEQAKTQNI--------------- 70 (154)
T ss_dssp TEEEEEEEEEEETTTSSSCEEEEEEECSTTCTTCEEEECCSSCCHHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred CeEEEEEccCcCCCCCCCCcEEEEEEEECCCceeEEeecCCCCchHHHHHHHHHHHHHHHHhCCC---------------
Confidence 45799999998753 27899988542 23445555689999999999999999976432
Q ss_pred hhhhhhhhhcccceEEEEecCHHHHHHHHcc--------CCCC---HH-HHHHHHHHHHHHhcCCeEEEEEecCCCCCcc
Q psy10264 257 KIKDLIRTELILQNFIICSDSKSSLQALQNV--------YHAS---PL-VCNIISTIQDIRELGTRVSFFWIPSHLGIRE 324 (426)
Q Consensus 257 ~~~~~~~~~~~~~~v~I~tDs~~al~~l~~~--------~~~s---~~-~~~i~~~~~~l~~~~~~v~~~WVPgH~gi~g 324 (426)
.++.|+|||+++++.|... +..+ +. ...+++.+.++.. +..|.|.|||||+|++|
T Consensus 71 ------------~~v~i~tDS~~vi~~i~~~~~~w~~~~w~~~~~~~~~n~~l~~~i~~l~~-~~~v~~~~V~~H~g~~~ 137 (154)
T 2qkb_A 71 ------------NKLVLYTNSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDFVALERLTQ-GMDIQWMHVPGHSGFIG 137 (154)
T ss_dssp ------------CEEEEEESCHHHHHHHHTHHHHHHTTTSBCTTSSBCTTHHHHHHHHHHHT-TCEEEEEECCTTSSCHH
T ss_pred ------------ceEEEEECcHHHHhhhhhhHHHHHhccccccCCCccccHHHHHHHHHHHc-CCceEEEEccCCCCCHh
Confidence 7899999999999999872 2211 11 2455666666544 56799999999999999
Q ss_pred chHHhHHHhcccCCC
Q psy10264 325 NENVDHAARHCNDVP 339 (426)
Q Consensus 325 Ne~AD~lAk~a~~~~ 339 (426)
||.||+|||+|+..+
T Consensus 138 N~~AD~LA~~a~~~~ 152 (154)
T 2qkb_A 138 NEEADRLAREGAKQS 152 (154)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998764
No 2
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A
Probab=99.86 E-value=8.8e-22 Score=174.21 Aligned_cols=122 Identities=21% Similarity=0.288 Sum_probs=92.5
Q ss_pred CCceeeccCCCCC--CcceEEEEEcce-eeeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q psy10264 185 FDTLCFTDGSKTS--DHTGAAYIIGDE-VCSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEKIKDL 261 (426)
Q Consensus 185 ~~~~iytDgS~~~--~~~G~g~v~~~~-~~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (426)
..+.||||||+.. +..|+|+++.+. .....+ ..+|++.||+.|++.||+.+ .
T Consensus 11 ~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~Tnn~aEl~A~i~AL~~~----~-------------------- 65 (150)
T 3qio_A 11 GAETFYVDGAANRETKLGKAGYVTNRGRQKVVTL-TDTTNQKTELQAIYLALQDS----G-------------------- 65 (150)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHHS----C--------------------
T ss_pred CCEEEEEccCCCCCCCCeEEEEEEEcCCEEEEeC-CCCCHHHHHHHHHHHHHHhC----C--------------------
Confidence 4679999999765 358899888542 222233 46899999999999999873 2
Q ss_pred hhhhcccceEEEEecCHHHHHHHHcc--------CCCC---HH-HHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHh
Q psy10264 262 IRTELILQNFIICSDSKSSLQALQNV--------YHAS---PL-VCNIISTIQDIRELGTRVSFFWIPSHLGIRENENVD 329 (426)
Q Consensus 262 ~~~~~~~~~v~I~tDs~~al~~l~~~--------~~~s---~~-~~~i~~~~~~l~~~~~~v~~~WVPgH~gi~gNe~AD 329 (426)
.++.|+|||+++++.|... +..+ ++ -+++++.+.++...+..|.|.|||||+|++|||.||
T Consensus 66 -------~~v~i~tDS~~v~~~i~~w~~~W~~~gw~~~~g~~v~n~~l~~~l~~~l~~~~~v~~~wV~gH~g~~~Ne~AD 138 (150)
T 3qio_A 66 -------LEVNIVTDSQYALGIITQWIHNWKKRGWKTADKKPVKNVDLVNQIIEQLIKKEKVYLAWVPAHKGIGGNEQVD 138 (150)
T ss_dssp -------SEEEEEESCHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHTTCSEEEEEECCTTSCCHHHHHHH
T ss_pred -------CcEEEEeCcHHHHHHHHHHHHHHhhcCcCcCcCcccccHHHHHHHHHHHhhcCceEEEEccCcCCChhHHHHH
Confidence 7799999999999999874 1111 21 245555555444578899999999999999999999
Q ss_pred HHHhcccCC
Q psy10264 330 HAARHCNDV 338 (426)
Q Consensus 330 ~lAk~a~~~ 338 (426)
+||++|+..
T Consensus 139 ~LA~~a~~~ 147 (150)
T 3qio_A 139 KLVSAGIRK 147 (150)
T ss_dssp HHHHTTTSC
T ss_pred HHHHHHHHH
Confidence 999999864
No 3
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A
Probab=99.85 E-value=1.9e-22 Score=177.91 Aligned_cols=127 Identities=17% Similarity=0.100 Sum_probs=98.9
Q ss_pred CCCceeeccCCCCCCcceEEEEEcc--e--eeec-cC--CC--ccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy10264 184 KFDTLCFTDGSKTSDHTGAAYIIGD--E--VCSM-KL--NP--VCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKC 254 (426)
Q Consensus 184 ~~~~~iytDgS~~~~~~G~g~v~~~--~--~~~~-~l--~~--~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~ 254 (426)
+..+.||||||+.++.+|+|+|+.+ . ..+. .. +. .+||+.||+.|++.||+.+.+.
T Consensus 4 ~~~i~iytDGs~~~g~~G~G~vi~~~g~~~~~~~~~~~~~~~~~~tNn~aEl~A~~~AL~~a~~~--------------- 68 (147)
T 2kq2_A 4 RTEYDVYTDGSYVNGQYAWAYAFVKDGKVHYEDADVGKNPAAATMRNVAGEIAAALYAVKKASQL--------------- 68 (147)
T ss_dssp TSCCEEECCCCCBTTBCEEEEEEEETTEEEEEEEEECCCGGGGGTCTTHHHHHHHHHHHHHHHHH---------------
T ss_pred CCeEEEEECCCCCCCCcEEEEEEEECCEEEEEEeccccccccccccHHHHHHHHHHHHHHHHHHC---------------
Confidence 3578999999999888999999942 1 1222 22 22 3689999999999999987652
Q ss_pred HhhhhhhhhhhcccceEEEEecCHHHHHHHHccCCCC-HHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHh
Q psy10264 255 LEKIKDLIRTELILQNFIICSDSKSSLQALQNVYHAS-PLVCNIISTIQDIRELGTRVSFFWIPSHLGIRENENVDHAAR 333 (426)
Q Consensus 255 ~~~~~~~~~~~~~~~~v~I~tDs~~al~~l~~~~~~s-~~~~~i~~~~~~l~~~~~~v~~~WVPgH~gi~gNe~AD~lAk 333 (426)
. .+|.|+|||+.+...+.+.+..+ +......+++++|.. .|.|.|||||+|++|||.||+|||
T Consensus 69 ------------~-~~v~I~tDS~~i~~w~~~~w~~~~~~~~~~~~l~~~l~~---~v~~~wV~gH~g~~~Ne~AD~LA~ 132 (147)
T 2kq2_A 69 ------------G-VKIRILHDYAGIAFWATGEWKAKNEFTQAYAKLMNQYRG---IYSFEKVKAHSGNEFNDYVDMKAK 132 (147)
T ss_dssp ------------T-CCCCBSSCCSTHHHHTTSSSSCCHHHHHHHHCGGGGGST---TCCBCCCCCCCCCHHHHHHHHHHH
T ss_pred ------------C-CeEEEEECcHHHHHHHhCCCccCCcchHHHHHHHHHhcC---CeeEEEecCcCCCcchHHHHHHHH
Confidence 1 37999999999988888877666 444555555555533 899999999999999999999999
Q ss_pred cccCCCCc
Q psy10264 334 HCNDVPIT 341 (426)
Q Consensus 334 ~a~~~~~~ 341 (426)
+|+.....
T Consensus 133 ~a~~~~~~ 140 (147)
T 2kq2_A 133 SALGIRDL 140 (147)
T ss_dssp HHHTCCCT
T ss_pred HHHhcccc
Confidence 99977554
No 4
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum}
Probab=99.84 E-value=7.4e-22 Score=173.57 Aligned_cols=123 Identities=23% Similarity=0.235 Sum_probs=90.8
Q ss_pred CCceeeccCCCCCC--cceEEEEEcce----eeeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy10264 185 FDTLCFTDGSKTSD--HTGAAYIIGDE----VCSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEKI 258 (426)
Q Consensus 185 ~~~~iytDgS~~~~--~~G~g~v~~~~----~~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (426)
..+.||||||+..+ ..|+|+++.+. ..+..+ ..+|++.||+.|++.||+.+.+
T Consensus 3 ~~i~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~A~~~AL~~~~~-------------------- 61 (146)
T 3h08_A 3 KTITIYTDGAASGNPGKGGWGALLMYGSSRKEISGYD-PATTNNRMELMAAIKGLEALKE-------------------- 61 (146)
T ss_dssp CEEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--------------------
T ss_pred ceEEEEEecCCCCCCCceEEEEEEEECCeeEEeecCC-CCCcHHHHHHHHHHHHHHhcCc--------------------
Confidence 35799999997763 58999988431 122223 3678999999999999998743
Q ss_pred hhhhhhhcccceEEEEecCHHHHHHHHccC---------CCC---H-HHHHHHHHHHHHHhcCCeEEEEEecCCCCCccc
Q psy10264 259 KDLIRTELILQNFIICSDSKSSLQALQNVY---------HAS---P-LVCNIISTIQDIRELGTRVSFFWIPSHLGIREN 325 (426)
Q Consensus 259 ~~~~~~~~~~~~v~I~tDs~~al~~l~~~~---------~~s---~-~~~~i~~~~~~l~~~~~~v~~~WVPgH~gi~gN 325 (426)
..++.|+|||++++..|...+ ..+ + .-+.+++.+.++... ..|.|.|||||+|++||
T Consensus 62 ---------~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~~~~v~n~~l~~~~~~~~~~-~~v~~~~V~gH~g~~~N 131 (146)
T 3h08_A 62 ---------PARVQLYSDSAYLVNAMNEGWLKRWVKNGWKTAAKKPVENIDLWQEILKLTTL-HRVTFHKVKGHSDNPYN 131 (146)
T ss_dssp ---------CCEEEEEESCHHHHHHHHSSHHHHHHHTTCC----CCCTTHHHHHHHHHHHHH-SEEEEEECCC-CCSHHH
T ss_pred ---------cCcEEEEeChHHHHHHHHHHHHHHHHHCCCccCCCCCcCCHHHHHHHHHHHhh-CceEEEEcCCcCCcHhH
Confidence 278999999999999998721 111 1 123455555554443 57999999999999999
Q ss_pred hHHhHHHhcccCC
Q psy10264 326 ENVDHAARHCNDV 338 (426)
Q Consensus 326 e~AD~lAk~a~~~ 338 (426)
|.||+|||+|+..
T Consensus 132 ~~AD~LA~~a~~~ 144 (146)
T 3h08_A 132 SRADELARLAIKE 144 (146)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999753
No 5
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A
Probab=99.83 E-value=4.2e-21 Score=172.39 Aligned_cols=124 Identities=24% Similarity=0.254 Sum_probs=91.3
Q ss_pred CCceeeccCCCC--CCcceEEEEEcc--ee-eeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy10264 185 FDTLCFTDGSKT--SDHTGAAYIIGD--EV-CSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEKIK 259 (426)
Q Consensus 185 ~~~~iytDgS~~--~~~~G~g~v~~~--~~-~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (426)
.++.||||||+. ++..|+|+++.. .. ........+|++.||+.|+..||+.+ + .
T Consensus 22 ~~i~iytDGs~~~npG~~g~G~vi~~~~~~~~~~~~~~~~Tnn~aEl~Ai~~AL~~~-~--~------------------ 80 (165)
T 3p1g_A 22 ADYTWYTDGSSFLQEGQRRAGAAVTTETEVIWARALPAGTSAQRAELIALTQALKMA-E--G------------------ 80 (165)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEECSSCEEEEEEECTTCCHHHHHHHHHHHHHHHT-B--T------------------
T ss_pred CCEEEEEEcccCCCCCceEEEEEEEECCEEEEEecCCCCCcHHHHHHHHHHHHHHHc-c--C------------------
Confidence 358999999987 456888987742 11 11234557899999999999999987 1 2
Q ss_pred hhhhhhcccceEEEEecCHHHHHHHHccCCCCHH-HHHHHHHHHHHHhcCCeEEEEEecCCCC-----CccchHHhHHHh
Q psy10264 260 DLIRTELILQNFIICSDSKSSLQALQNVYHASPL-VCNIISTIQDIRELGTRVSFFWIPSHLG-----IRENENVDHAAR 333 (426)
Q Consensus 260 ~~~~~~~~~~~v~I~tDs~~al~~l~~~~~~s~~-~~~i~~~~~~l~~~~~~v~~~WVPgH~g-----i~gNe~AD~lAk 333 (426)
.++.|+|||+++++.+-......++ -+++++.+......+..|+|.|||||+| ++|||+||+|||
T Consensus 81 ---------~~v~I~tDS~~vi~~iw~~~~g~~v~n~dl~~~l~~~l~~~~~v~~~wVkgH~g~~~~~~~gNe~AD~LA~ 151 (165)
T 3p1g_A 81 ---------KKLNVYTDSRYAFATAHVHSEGREIKNKNEILALLKALFLPKRLSIIHCPGHQKGNSAEARGNRMADQAAR 151 (165)
T ss_dssp ---------SEEEEEECCHHHHHHHHSCCCSCCCSSHHHHHHHHHHTTSBSEEEEEECCSSCCSCSHHHHHHHHHHHHHH
T ss_pred ---------ceEEEEEchHHHHhhhhcccCCCcccCHHHHHHHHHHHhcCCceEEEEecCCCCCCcCcchHHHHHHHHHH
Confidence 7899999999999998322222221 1333333322224678999999999999 999999999999
Q ss_pred cccCC
Q psy10264 334 HCNDV 338 (426)
Q Consensus 334 ~a~~~ 338 (426)
+|+..
T Consensus 152 ~aa~~ 156 (165)
T 3p1g_A 152 EAAMK 156 (165)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 99854
No 6
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ...
Probab=99.83 E-value=3.4e-21 Score=171.29 Aligned_cols=125 Identities=22% Similarity=0.310 Sum_probs=95.1
Q ss_pred CceeeccCCCCCC--cceEEEEEcc--e--eeeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhh
Q psy10264 186 DTLCFTDGSKTSD--HTGAAYIIGD--E--VCSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEKIK 259 (426)
Q Consensus 186 ~~~iytDgS~~~~--~~G~g~v~~~--~--~~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (426)
.+.||||||+..+ ..|+|+++.+ . ..+..+ ..+|++.||+.|++.||+.+.+
T Consensus 4 ~~~iytDGs~~~n~~~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~~~~--------------------- 61 (155)
T 1jl1_A 4 QVEIFTAGSALGNPGPGGYGAILRYRGREKTFSAGY-TRTTNNRMELMAAIVALEALKE--------------------- 61 (155)
T ss_dssp CEEEEEEEEESSTTEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCCS---------------------
T ss_pred eEEEEEccccCCCCCceEEEEEEEECCeEEEEecCC-CCCcHHHHHHHHHHHHHHHhCc---------------------
Confidence 5789999998753 5899999853 1 122233 3678999999999999998743
Q ss_pred hhhhhhcccceEEEEecCHHHHHHHHc--------cCCCC---HH-HHHHHHHHHHHHhcCCeEEEEEecCCCCCccchH
Q psy10264 260 DLIRTELILQNFIICSDSKSSLQALQN--------VYHAS---PL-VCNIISTIQDIRELGTRVSFFWIPSHLGIRENEN 327 (426)
Q Consensus 260 ~~~~~~~~~~~v~I~tDs~~al~~l~~--------~~~~s---~~-~~~i~~~~~~l~~~~~~v~~~WVPgH~gi~gNe~ 327 (426)
..++.|+|||++++..|.. .+..+ ++ -..+++.+.++.. ...|.|.|||||+|++|||.
T Consensus 62 --------~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne~ 132 (155)
T 1jl1_A 62 --------HAEVILSTDSQYVRQGITQWIHNWKKRGWKTADKKPVKNVDLWQRLDAALG-QHQIKWEWVKGHAGHPENER 132 (155)
T ss_dssp --------CCEEEEEECCHHHHHHHHTTHHHHHHTTTBCTTSCBCTTHHHHHHHHHHTT-TCEEEEEECCSSTTCHHHHH
T ss_pred --------CCcEEEEeCHHHHHHHHHHHHHHHhhcccccccCCccCCHHHHHHHHHHHc-cCceEEEEcCCCCCCHHHHH
Confidence 2689999999999999987 33221 11 1455566666544 46999999999999999999
Q ss_pred HhHHHhcccCCCCc
Q psy10264 328 VDHAARHCNDVPIT 341 (426)
Q Consensus 328 AD~lAk~a~~~~~~ 341 (426)
||+||++|+..+..
T Consensus 133 AD~LA~~a~~~~~~ 146 (155)
T 1jl1_A 133 ADELARAAAMNPTL 146 (155)
T ss_dssp HHHHHHHHHHSCCB
T ss_pred HHHHHHHHHhccch
Confidence 99999999976543
No 7
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A
Probab=99.82 E-value=7.5e-21 Score=169.63 Aligned_cols=123 Identities=24% Similarity=0.305 Sum_probs=93.5
Q ss_pred CCceeeccCCCCC--CcceEEEEEcc--e--eeeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy10264 185 FDTLCFTDGSKTS--DHTGAAYIIGD--E--VCSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEKI 258 (426)
Q Consensus 185 ~~~~iytDgS~~~--~~~G~g~v~~~--~--~~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (426)
..+.||||||+.. +..|+|+|+.+ . ..+..+ ..+|++.||+.|++.||+.+..
T Consensus 5 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~AL~~~~~-------------------- 63 (158)
T 2e4l_A 5 KLIHIFTDGSCLGNPGPGGYGIVMNYKGHTKEMSDGF-SLTTNNRMELLAPIVALEALKE-------------------- 63 (158)
T ss_dssp CEEEEEEEEEESSSSEEEEEEEEEEETTEEEEEEEEE-EEECHHHHHHHHHHHHHHTCSS--------------------
T ss_pred CeEEEEEcccccCCCCcEEEEEEEEECCEEEEEecCc-CCCccHHHHHHHHHHHHHHhcc--------------------
Confidence 3579999999874 35899999842 1 122233 3578999999999999998632
Q ss_pred hhhhhhhcccceEEEEecCHHHHHHHHc--------cCCCC---HH-HHHHHHHHHHHHhcCCeEEEEEecCCCCCccch
Q psy10264 259 KDLIRTELILQNFIICSDSKSSLQALQN--------VYHAS---PL-VCNIISTIQDIRELGTRVSFFWIPSHLGIRENE 326 (426)
Q Consensus 259 ~~~~~~~~~~~~v~I~tDs~~al~~l~~--------~~~~s---~~-~~~i~~~~~~l~~~~~~v~~~WVPgH~gi~gNe 326 (426)
..++.|+|||++++..|.. .+..+ +. -..+++.+.++.. +..|.|.|||||+|++|||
T Consensus 64 ---------~~~v~I~tDS~~vi~~i~~w~~~W~~n~~~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~Ne 133 (158)
T 2e4l_A 64 ---------PCKIILTSDSQYMRQGIMTWIHGWKKKGWMTSNRTPVKNVDLWKRLDKAAQ-LHQIDWRWVKGHAGHAENE 133 (158)
T ss_dssp ---------CCEEEEEECCHHHHHHHHTHHHHHHHTTTBCTTSSBCTTHHHHHHHHHHHT-TSEEEEEECCTTCCCHHHH
T ss_pred ---------CCeEEEEeCHHHHHHHHHHHHHHHHHccccccCCCcccCHHHHHHHHHHHc-cCcEEEEEccCCCCchhHH
Confidence 2689999999999999988 43221 11 2345555555544 4699999999999999999
Q ss_pred HHhHHHhcccCC
Q psy10264 327 NVDHAARHCNDV 338 (426)
Q Consensus 327 ~AD~lAk~a~~~ 338 (426)
.||+||++|+..
T Consensus 134 ~AD~LAk~a~~~ 145 (158)
T 2e4l_A 134 RCDQLARAAAEA 145 (158)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHHh
Confidence 999999999976
No 8
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A
Probab=99.80 E-value=1.5e-20 Score=169.09 Aligned_cols=125 Identities=22% Similarity=0.214 Sum_probs=94.2
Q ss_pred CCceeeccCCCCC--CcceEEEEEcc--ee--eeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy10264 185 FDTLCFTDGSKTS--DHTGAAYIIGD--EV--CSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEKI 258 (426)
Q Consensus 185 ~~~~iytDgS~~~--~~~G~g~v~~~--~~--~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (426)
..+.||||||+.. +..|+|+|+.+ .. .+... ..+|++.||+.|++.||+.+..
T Consensus 7 ~~i~iytDGs~~~n~g~~G~G~v~~~~~~~~~~~~~~-~~~Tnn~aEl~Ai~~AL~~~~~-------------------- 65 (166)
T 1ril_A 7 KRVALFTDGACLGNPGPGGWAALLRFHAHEKLLSGGE-ACTTNNRMELKAAIEGLKALKE-------------------- 65 (166)
T ss_dssp CCCCEEEEEEESSTTEEEEEEEEECBTTBCCEECCEE-EEECHHHHHHHHHHHHHHSCCS--------------------
T ss_pred ccEEEEECccccCCCCCEEEEEEEEECCEEEEEecCC-CCCcHHHHHHHHHHHHHHHhcc--------------------
Confidence 3678999999875 35899999853 11 22222 3678999999999999997632
Q ss_pred hhhhhhhcccceEEEEecCHHHHHHHHc---------cCCCC---HH-HHHHHHHHHHHHhcCCeEEEEEecCCCCCccc
Q psy10264 259 KDLIRTELILQNFIICSDSKSSLQALQN---------VYHAS---PL-VCNIISTIQDIRELGTRVSFFWIPSHLGIREN 325 (426)
Q Consensus 259 ~~~~~~~~~~~~v~I~tDs~~al~~l~~---------~~~~s---~~-~~~i~~~~~~l~~~~~~v~~~WVPgH~gi~gN 325 (426)
..+|.|+|||++++..|.. .+..+ ++ -.++++.+.++.. ...|.|.|||||+|++||
T Consensus 66 ---------~~~v~I~tDS~~vi~~i~~~w~~~W~~~~w~~~~g~~v~n~~l~~~i~~l~~-~~~v~~~wV~gH~g~~~N 135 (166)
T 1ril_A 66 ---------PCEVDLYTDSHYLKKAFTEGWLEGWRKRGWRTAEGKPVKNRDLWEALLLAMA-PHRVRFHFVKGHTGHPEN 135 (166)
T ss_dssp ---------CCEEEEECCCHHHHHHHHSSHHHHHHHTTSBCTTSSBCTTHHHHHHHHHHHT-TSEEECCCCCGGGSCTHH
T ss_pred ---------CCeEEEEeChHHHHHHHhhhHHHHHHhcccccccCCccCcHHHHHHHHHHHh-cCeEEEEEeeCCCCchhH
Confidence 2579999999999999998 23221 11 2345566666544 369999999999999999
Q ss_pred hHHhHHHhcccCCCC
Q psy10264 326 ENVDHAARHCNDVPI 340 (426)
Q Consensus 326 e~AD~lAk~a~~~~~ 340 (426)
|.||+|||+|+....
T Consensus 136 e~AD~LAk~a~~~~~ 150 (166)
T 1ril_A 136 ERVDREARRQAQSQA 150 (166)
T ss_dssp HHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999987654
No 9
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis}
Probab=99.77 E-value=8.6e-19 Score=152.25 Aligned_cols=120 Identities=16% Similarity=0.222 Sum_probs=97.2
Q ss_pred CceeeccCCCCCC--cceEEEEEcce-------eeeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Q psy10264 186 DTLCFTDGSKTSD--HTGAAYIIGDE-------VCSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLE 256 (426)
Q Consensus 186 ~~~iytDgS~~~~--~~G~g~v~~~~-------~~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~ 256 (426)
.+.||||||+..+ ..|+|+++.+. ..+..+ ..+|++.||+.|++.||+.+.+...
T Consensus 3 ~~~iy~DGs~~~~~g~~g~G~v~~~~~~~~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~--------------- 66 (141)
T 3hst_B 3 KVVIEADGGSRGNPGPAGYGAVVWTADHSTVLAESKQAI-GRATNNVAEYRGLIAGLDDAVKLGA--------------- 66 (141)
T ss_dssp EEEEEEEEEESSSSEEEEEEEEEEETTSCSEEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHHTC---------------
T ss_pred EEEEEEecCCCCCCCCcEEEEEEEeCCCCcEEEeeeccC-CCCchHHHHHHHHHHHHHHHHHCCC---------------
Confidence 4789999998753 68999998532 122223 3679999999999999999977543
Q ss_pred hhhhhhhhhcccceEEEEecCHHHHHHHHccCCC-CHHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHhcc
Q psy10264 257 KIKDLIRTELILQNFIICSDSKSSLQALQNVYHA-SPLVCNIISTIQDIRELGTRVSFFWIPSHLGIRENENVDHAARHC 335 (426)
Q Consensus 257 ~~~~~~~~~~~~~~v~I~tDs~~al~~l~~~~~~-s~~~~~i~~~~~~l~~~~~~v~~~WVPgH~gi~gNe~AD~lAk~a 335 (426)
.++.|+|||+.+++.+.+.+.. ++....+++.+.+|...+..|+|.|||+ ++||.||+||++|
T Consensus 67 ------------~~v~i~tDS~~vv~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~v~~~~V~~----~~N~~AD~LA~~a 130 (141)
T 3hst_B 67 ------------TEAAVLMDSKLVVEQMSGRWKVKHPDLLKLYVQAQALASQFRRINYEWVPR----ARNTYADRLANDA 130 (141)
T ss_dssp ------------SEEEEEESCHHHHHHHTTSSCCCSHHHHHHHHHHHHHHTTSSEEEEEECCG----GGCHHHHHHHHHH
T ss_pred ------------ceEEEEeChHHHHHHHhCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEcCC----cccHHHHHHHHHH
Confidence 7899999999999999997643 4556677777778877789999999995 8999999999998
Q ss_pred cC
Q psy10264 336 ND 337 (426)
Q Consensus 336 ~~ 337 (426)
+.
T Consensus 131 ~~ 132 (141)
T 3hst_B 131 MD 132 (141)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 10
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus}
Probab=99.76 E-value=2.4e-19 Score=160.83 Aligned_cols=125 Identities=15% Similarity=0.187 Sum_probs=87.2
Q ss_pred CCceeeccCCCCCC--c-----ceEEEEEcc--e----eeeccCC-CccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q psy10264 185 FDTLCFTDGSKTSD--H-----TGAAYIIGD--E----VCSMKLN-PVCSIFTAELVAIEKCLEKIKDLIRTELISELVA 250 (426)
Q Consensus 185 ~~~~iytDgS~~~~--~-----~G~g~v~~~--~----~~~~~l~-~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~ 250 (426)
..++||||||+..+ . .|+|+++.. . ...+... ...+.+.||+.|+..||+.++..
T Consensus 6 ~evviYTDGsc~gNpgp~~~~~aG~Gv~~~~~~~~~~~~~~~~~~tnn~te~~Aei~Al~~al~~al~~----------- 74 (165)
T 2lsn_A 6 YEGVFYTDGSAIKSPDPTKSNNAGMGIVHATYKPEYQVLNQWSIPLGNHTAQMAEIAAVEFACKKALKI----------- 74 (165)
T ss_dssp CSEEEEEEEEEEECSSCTTCEEEEEEEEEECCSSSCCEEEEEEEEESSCCHHHHHHHHHHHHHHHHHHS-----------
T ss_pred ceEEEEEcCCCCCCCCCCCCCcEEEEEEEEECCCccEEeccccCCchHHHHHHHHHHHHHHHHHHHhcC-----------
Confidence 57899999997643 2 799998831 1 1122211 24456677777777777665431
Q ss_pred HHHHHhhhhhhhhhhcccceEEEEecCHHHHHHHHc--------cCCCC---HH-HHHHHHHHHHHHhcCCeEEEEEecC
Q psy10264 251 IEKCLEKIKDLIRTELILQNFIICSDSKSSLQALQN--------VYHAS---PL-VCNIISTIQDIRELGTRVSFFWIPS 318 (426)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~v~I~tDs~~al~~l~~--------~~~~s---~~-~~~i~~~~~~l~~~~~~v~~~WVPg 318 (426)
..+|.|+|||+++++.|.. .+..+ |+ -.++++.+.++......|.|.||||
T Consensus 75 -----------------~~~v~I~TDS~Yvi~~it~w~~~Wk~ngw~~~~~~pVkN~dL~~~l~~~~~~~~~v~~~~Vkg 137 (165)
T 2lsn_A 75 -----------------PGPVLVITDSFYVAESANKELPYWKSNGFVNNKKKPLKHISKWKSIAECLSMKPDITIQHEKG 137 (165)
T ss_dssp -----------------SSCEEEEESCHHHHHHHHTHHHHHHHTTSCSCSSSCCSSHHHHHHHHHHHHHCTTCEEEECCS
T ss_pred -----------------CCeEEEEeChHHHHhhhhhhhhhheeccccccCCCcccCHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 2579999999999999964 22222 22 2456666666556667899999999
Q ss_pred CCCC------ccchHHhHHHhcccC
Q psy10264 319 HLGI------RENENVDHAARHCND 337 (426)
Q Consensus 319 H~gi------~gNe~AD~lAk~a~~ 337 (426)
|+|+ +|||+||+||++|+.
T Consensus 138 H~g~~~~~~~~gNe~AD~LA~~gA~ 162 (165)
T 2lsn_A 138 HQPTNTSIHTEGNALADKLATQGSY 162 (165)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCccCCCCChHHHHHHHHHHHhhh
Confidence 9995 589999999999873
No 11
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism}
Probab=99.76 E-value=1.1e-18 Score=150.97 Aligned_cols=124 Identities=23% Similarity=0.310 Sum_probs=94.7
Q ss_pred CceeeccCCCCCC--cceEEEEEcc----e--eeeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy10264 186 DTLCFTDGSKTSD--HTGAAYIIGD----E--VCSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEK 257 (426)
Q Consensus 186 ~~~iytDgS~~~~--~~G~g~v~~~----~--~~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~~ 257 (426)
.+.||||||+..+ ..|+|+++.+ . ..+..+ ..+|++.||+.|++.||+.+.+....
T Consensus 3 ~~~iy~DGs~~~n~g~~G~G~v~~~~~g~~~~~~~~~~-~~~tn~~aEl~A~~~aL~~a~~~~~~--------------- 66 (140)
T 3u3g_D 3 KIIIYTDGGARGNPGPAGIGVVITDEKGNTLHESSAYI-GETTNNVAEYEALIRALEDLQMFGDK--------------- 66 (140)
T ss_dssp EEEEEEEEEESSTTEEEEEEEEEECTTSCEEEEEEEEE-EEECHHHHHHHHHHHHHHHHGGGGGG---------------
T ss_pred eEEEEEecCCCCCCCCcEEEEEEEeCCCCEEEEEEeeC-CCCchHHHHHHHHHHHHHHHHHcCCC---------------
Confidence 4789999998753 6899999853 1 122223 35799999999999999999765430
Q ss_pred hhhhhhhhcccceEEEEecCHHHHHHHHccCCC-CHHHHHHHHHHHHH-HhcCCeEEEEEecCCCCCccchHHhHHHhcc
Q psy10264 258 IKDLIRTELILQNFIICSDSKSSLQALQNVYHA-SPLVCNIISTIQDI-RELGTRVSFFWIPSHLGIRENENVDHAARHC 335 (426)
Q Consensus 258 ~~~~~~~~~~~~~v~I~tDs~~al~~l~~~~~~-s~~~~~i~~~~~~l-~~~~~~v~~~WVPgH~gi~gNe~AD~lAk~a 335 (426)
....++.|+|||++++..+.+.+.. ++....+++.+.++ ......|+|.|||+ ++||.||+|||+|
T Consensus 67 --------~~~~~v~i~tDS~~vi~~i~~~~~~~~~~l~~~~~~i~~l~~~~~~~v~~~~V~~----~~N~~AD~LA~~a 134 (140)
T 3u3g_D 67 --------LVDMEVEVRMDSELIVRQMQGVYKVKEPTLKEKFAKIAHIKMERVPNLVFVHIPR----EKNARADELVNEA 134 (140)
T ss_dssp --------GTTCEEEEEESCHHHHHHHTTSSCCCCGGGHHHHHHHHHHHHHHCTTCEEEECCG----GGGHHHHHHHHHH
T ss_pred --------CCCceEEEEeChHHHHHHhCCCcccCCHHHHHHHHHHHHHhhcCCCcEEEEEcCc----hhhHHHHHHHHHH
Confidence 0013899999999999999997753 34445566667676 66667999999993 8999999999998
Q ss_pred cC
Q psy10264 336 ND 337 (426)
Q Consensus 336 ~~ 337 (426)
+.
T Consensus 135 ~~ 136 (140)
T 3u3g_D 135 ID 136 (140)
T ss_dssp HH
T ss_pred HH
Confidence 74
No 12
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A
Probab=99.73 E-value=6.3e-18 Score=148.73 Aligned_cols=119 Identities=15% Similarity=0.245 Sum_probs=90.5
Q ss_pred ceeeccCCCC-C--CcceE-EEEEcc---ee--eeccCC---CccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy10264 187 TLCFTDGSKT-S--DHTGA-AYIIGD---EV--CSMKLN---PVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKC 254 (426)
Q Consensus 187 ~~iytDgS~~-~--~~~G~-g~v~~~---~~--~~~~l~---~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~ 254 (426)
+.||||||+. . +.+|+ |+++.+ .. .+...+ ..+|++.||+.|++.||+.+.....
T Consensus 2 ~~iy~DGs~~~~n~g~~G~~G~vi~~~g~~~~~~~~~~~~~~~~~tnn~aEl~A~~~aL~~a~~~g~------------- 68 (149)
T 2ehg_A 2 IIGYFDGLCEPKNPGGIATFGFVIYLDNRKIEGYGLAEKPFSINSTNNVAEYSGLICLMETMLRLGI------------- 68 (149)
T ss_dssp CEEEEEEEEESSSSSSEEEEEEEEECSSCEEEEEEECSCTTCTTCCHHHHHHHHHHHHHHHHHHHTC-------------
T ss_pred EEEEEeeccCCCCCChheEEEEEEEECCEEEEEeccccCCCCCCccHHHHHHHHHHHHHHHHHHcCC-------------
Confidence 5799999987 2 46785 988853 11 122223 3789999999999999999977543
Q ss_pred HhhhhhhhhhhcccceEEEEecCHHHHHHHHccCCCC-HHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHh
Q psy10264 255 LEKIKDLIRTELILQNFIICSDSKSSLQALQNVYHAS-PLVCNIISTIQDIRELGTRVSFFWIPSHLGIRENENVDHAAR 333 (426)
Q Consensus 255 ~~~~~~~~~~~~~~~~v~I~tDs~~al~~l~~~~~~s-~~~~~i~~~~~~l~~~~~~v~~~WVPgH~gi~gNe~AD~lAk 333 (426)
.++.|+|||+.++..+.+.+..+ +....+++.+.++.... .|.|.|||+ ++|+.||+||+
T Consensus 69 --------------~~v~i~tDS~~vi~~i~~~w~~~~~~~~~l~~~i~~l~~~~-~v~~~~V~~----~~N~~AD~LA~ 129 (149)
T 2ehg_A 69 --------------SSPIIKGDSQLVIKQMNGEYKVKAKRIIPLYEKAIELKKKL-NATLIWVPR----EENKEADRLSR 129 (149)
T ss_dssp --------------CSCEEEESCHHHHHHHTTSSCCCCTTHHHHHHHHHHHHHHH-TCEEEECCG----GGCHHHHHHHH
T ss_pred --------------CEEEEEeChHHHHHHHhCccccCCHHHHHHHHHHHHHHhcC-CEEEEEcCC----cccHHHHHHHH
Confidence 78999999999999999986543 33455555555554444 599999998 58999999999
Q ss_pred cccC
Q psy10264 334 HCND 337 (426)
Q Consensus 334 ~a~~ 337 (426)
+|+.
T Consensus 130 ~a~~ 133 (149)
T 2ehg_A 130 VAYE 133 (149)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9974
No 13
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B
Probab=99.72 E-value=5.8e-18 Score=179.34 Aligned_cols=116 Identities=25% Similarity=0.275 Sum_probs=89.6
Q ss_pred CCceeeccCCCCCC--cceEEEEEcce-eeeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q psy10264 185 FDTLCFTDGSKTSD--HTGAAYIIGDE-VCSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEKIKDL 261 (426)
Q Consensus 185 ~~~~iytDgS~~~~--~~G~g~v~~~~-~~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (426)
+.+.+|||||+..+ ..|+|+++... ..+... ..+||+.||+.|++.||+. ..
T Consensus 435 ~~~~iytDGs~~~n~g~~g~G~v~~~~~~~~~~~-~~~TNn~aEl~A~i~aL~~----~~-------------------- 489 (555)
T 1mu2_A 435 GAETFYTDGSCNRQSKEGKAGYVTDRGKDKVKKL-EQTTNQQAELEAFAMALTD----SG-------------------- 489 (555)
T ss_dssp TCEEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-SSCCHHHHHHHHHHHHHHT----SC--------------------
T ss_pred CceEEEEcccccCCCCCceEEEEEEeCCEeeccC-CCCCHHHHHHHHHHHHHHc----CC--------------------
Confidence 35799999998753 47888888432 222233 3678999999999999987 12
Q ss_pred hhhhcccceEEEEecCHHHHHHHHccCCCC--HHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHhccc
Q psy10264 262 IRTELILQNFIICSDSKSSLQALQNVYHAS--PLVCNIISTIQDIRELGTRVSFFWIPSHLGIRENENVDHAARHCN 336 (426)
Q Consensus 262 ~~~~~~~~~v~I~tDs~~al~~l~~~~~~s--~~~~~i~~~~~~l~~~~~~v~~~WVPgH~gi~gNe~AD~lAk~a~ 336 (426)
.++.|+|||++|+..+.+....+ ++.+++.+.+ ..+..|.|.|||||+|++|||.||+||++|+
T Consensus 490 -------~~v~I~tDS~~v~~~i~~~~~~~~~~l~~~~~~~~----~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a~ 555 (555)
T 1mu2_A 490 -------PKVNIIVDSQYVMGIVASQPTESESKIVNQIIEEM----IKKEAIYVAWVPAHKGIGGNQEVDHLVSQGI 555 (555)
T ss_dssp -------SEEEEEESCHHHHHHHHTCCSEESCHHHHHHHHHH----HHCSEEEEEECCSSSCCTTHHHHHHHHHTTC
T ss_pred -------CeEEEEEehHHHHHHHhcccccccHHHHHHHHHHh----ccCCcEEEEEEECCCCChhHHHHHHHHHhhC
Confidence 78999999999999999844322 5555444333 4478899999999999999999999999884
No 14
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=99.71 E-value=5e-18 Score=179.94 Aligned_cols=115 Identities=26% Similarity=0.308 Sum_probs=87.3
Q ss_pred CCceeeccCCCCC--CcceEEEEEcce-eeeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhhhh
Q psy10264 185 FDTLCFTDGSKTS--DHTGAAYIIGDE-VCSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEKIKDL 261 (426)
Q Consensus 185 ~~~~iytDgS~~~--~~~G~g~v~~~~-~~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (426)
+.+.||||||+.. +..|+|+++.+. ...... ..+||+.||+.|++.||+.+ .
T Consensus 438 ~~~~iytDGs~~~n~g~~g~g~v~~~~~~~~~~~-~~~TNn~aEl~Ai~~aL~~~----~-------------------- 492 (557)
T 2zd1_A 438 GAETFYVDGAANRETKLGKAGYVTNKGRQKVVPL-TNTTNQKTELQAIYLALQDS----G-------------------- 492 (557)
T ss_dssp TSCEEEEEEEECTTTCCEEEEEEETTSCEEEEEE-CSCCHHHHHHHHHHHHHHHS----C--------------------
T ss_pred CCEEEEEccCCCCCCCceEEEEEEECCcEEEecC-CCCCHHHHHHHHHHHHHHhC----C--------------------
Confidence 4579999999764 347888888532 222222 36799999999999999987 2
Q ss_pred hhhhcccceEEEEecCHHHHHHHHccCCCC--HHHHHHHHHHHHHHhcCCeEEEEEecCCCCCccchHHhHHHhcc
Q psy10264 262 IRTELILQNFIICSDSKSSLQALQNVYHAS--PLVCNIISTIQDIRELGTRVSFFWIPSHLGIRENENVDHAARHC 335 (426)
Q Consensus 262 ~~~~~~~~~v~I~tDs~~al~~l~~~~~~s--~~~~~i~~~~~~l~~~~~~v~~~WVPgH~gi~gNe~AD~lAk~a 335 (426)
.++.|+|||++|+..|.+....+ ++.+++.+.+ .....|.|.|||||+|++|||.||+||++|
T Consensus 493 -------~~v~I~tDS~~vi~~i~~~~~~~~~~l~~~~~~~l----~~~~~v~~~wV~~H~g~~~Ne~AD~LA~~a 557 (557)
T 2zd1_A 493 -------LEVNIVTDSQYALGIIQAQPDKSESELVNQIIEQL----IKKEKVYLAWVPAHKGIGGNEQVDKLVSAG 557 (557)
T ss_dssp -------SEEEEEECCHHHHHHHTTCCSEESSHHHHHHHHHH----HHCSEEEEEECCSSSCCTTCCGGGGCC---
T ss_pred -------CcEEEEeChHHHHHHHhcCCccCCHHHHHHHHHHH----hcCCCEEEEEcCCCCCChhHHHHHHHHhcC
Confidence 67999999999999999866542 4555444333 335689999999999999999999999986
No 15
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A*
Probab=99.11 E-value=2.9e-11 Score=105.44 Aligned_cols=116 Identities=13% Similarity=0.000 Sum_probs=80.7
Q ss_pred CCceeeccCCCCC--CcceEEEEEcc--ee--eeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy10264 185 FDTLCFTDGSKTS--DHTGAAYIIGD--EV--CSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEKI 258 (426)
Q Consensus 185 ~~~~iytDgS~~~--~~~G~g~v~~~--~~--~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (426)
..+.||||||+.. +..|+|+|+.. .. .+..++ .+|++.||+.|++.||+.+.+..
T Consensus 10 ~~~~iy~DGa~~gNpG~~G~G~vl~~~g~~~~~~~~~~-~~TNN~aEl~A~i~aL~~~~~~~------------------ 70 (142)
T 1zbf_A 10 IWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPIP-IGTNNMGEFLAIVHGLRYLKERN------------------ 70 (142)
T ss_dssp CSSSEEEEEEECSSSEEEEEEEEETTTCCEEEECCCEE-EECHHHHHHHHHHHHHHHHHHTT------------------
T ss_pred CeEEEEEeeccCCCCCCeEEEEEEEeCCEEEEEecccC-CcCcHHHHHHHHHHHHHHHHhCC------------------
Confidence 4578999999864 46899999952 11 122232 57899999999999999986531
Q ss_pred hhhhhhhcccceEEEEecCHHHHHHHHccCCCC-----HHHHHHHHHHHHHHh--cCCeEEEEEecCCCCCccchHHh
Q psy10264 259 KDLIRTELILQNFIICSDSKSSLQALQNVYHAS-----PLVCNIISTIQDIRE--LGTRVSFFWIPSHLGIRENENVD 329 (426)
Q Consensus 259 ~~~~~~~~~~~~v~I~tDs~~al~~l~~~~~~s-----~~~~~i~~~~~~l~~--~~~~v~~~WVPgH~gi~gNe~AD 329 (426)
.++.|+|||+.++..+++.+..+ ..-.++++++.++.. ++..+....|.-|.+.-||..||
T Consensus 71 ----------~~v~i~tDS~~vi~w~~~~~~k~~~~~~v~n~dLw~~l~~~~~w~~~~~~~~~~~kw~~~~~ge~pad 138 (142)
T 1zbf_A 71 ----------SRKPIYSNSQTAIKWVKDKKAKSTLVRNEETALIWKLVDEAEEWLNTHTYETPILKWQTDKWGEIKAD 138 (142)
T ss_dssp ----------CCCCEEESCHHHHHHHHHTCCCCCCCCSTTTHHHHHHHHHHHHHHHHCCCCCCEEECCHHHHCSCTTC
T ss_pred ----------CeEEEEEehHHHHHHHHcCCccCCCCCCcccHHHHHHHHHHHHHHhhCCCceeEEEeccCccCcCccc
Confidence 17999999999999999876321 122344444433211 23445556677788888999988
No 16
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A
Probab=98.80 E-value=8.5e-09 Score=88.56 Aligned_cols=75 Identities=15% Similarity=0.062 Sum_probs=56.3
Q ss_pred CCCceeeccCCCCC--CcceEEEEEcc--e--eeeccCCCccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh
Q psy10264 184 KFDTLCFTDGSKTS--DHTGAAYIIGD--E--VCSMKLNPVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEKCLEK 257 (426)
Q Consensus 184 ~~~~~iytDgS~~~--~~~G~g~v~~~--~--~~~~~l~~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~~~~~ 257 (426)
+....||||||+.. +..|+|+|+.+ . ..+..+ ..+||+.||+.|++.||+.+.+..
T Consensus 3 p~~~~iytDGac~GNPGp~G~ggV~~~~g~~~~~~g~~-~~tTNN~aEl~A~i~aL~~l~~~~----------------- 64 (134)
T 4htu_A 3 IIWESLSVDVGSQGNPGIVEYKGVDTKTGEVLFEREPI-PIGTNNMGEFLAIVHGLRYLKERN----------------- 64 (134)
T ss_dssp CCSSSEEEEEEEETTTEEEEEEEEETTTCCEEEEEEEE-EEECHHHHHHHHHHHHHHHHHHTT-----------------
T ss_pred ccceEEEEeeccCCCCCCeEEEEEEEECCEEEEEecCC-CCCchHHHHHHHHHHHHHHHHhCC-----------------
Confidence 45678999999875 35888666643 1 122223 268999999999999999987632
Q ss_pred hhhhhhhhcccceEEEEecCHHHHHHHHcc
Q psy10264 258 IKDLIRTELILQNFIICSDSKSSLQALQNV 287 (426)
Q Consensus 258 ~~~~~~~~~~~~~v~I~tDs~~al~~l~~~ 287 (426)
.++.|+|||+.|+..|.+.
T Consensus 65 -----------~~v~i~tDSqyVi~wi~~~ 83 (134)
T 4htu_A 65 -----------SRKPIYSNSQTAIKWVKDK 83 (134)
T ss_dssp -----------CCCCEEESCHHHHHHHHHT
T ss_pred -----------CCEEEEcchHHHHHHHHcC
Confidence 2379999999999999864
No 17
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2
Probab=79.72 E-value=0.48 Score=48.10 Aligned_cols=71 Identities=14% Similarity=0.037 Sum_probs=46.6
Q ss_pred CceeeccCCCCCCcceEEEEEcce---------eeeccCC---CccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy10264 186 DTLCFTDGSKTSDHTGAAYIIGDE---------VCSMKLN---PVCSIFTAELVAIEKCLEKIKDLIRTELISELVAIEK 253 (426)
Q Consensus 186 ~~~iytDgS~~~~~~G~g~v~~~~---------~~~~~l~---~~~~v~~AEl~Ai~~aL~~~~~~~~~~~~~~~~~~~~ 253 (426)
.+.+|||+|.. +.| +|+.+. ..+..+. ...++++.|+.||..|++.......
T Consensus 346 ~~~l~~DAS~~--~~g--avL~q~~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~~~~~yl~------------ 409 (455)
T 1rw3_A 346 PFELFVDEKQG--YAK--GVLTQKLGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTKDAGKLTM------------ 409 (455)
T ss_dssp TTSCEEEEEEC--SSS--BEECCBCTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHHHHHGGGC------------
T ss_pred cEEEEEeccCC--cce--eEEEEecCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHHHHHHHcC------------
Confidence 46899999843 222 244321 0122222 3557889999999999998866543
Q ss_pred HHhhhhhhhhhhcccceEEEEecCHHHHHHHHcc
Q psy10264 254 CLEKIKDLIRTELILQNFIICSDSKSSLQALQNV 287 (426)
Q Consensus 254 ~~~~~~~~~~~~~~~~~v~I~tDs~~al~~l~~~ 287 (426)
+..+.|+||+. ++..+.+.
T Consensus 410 --------------g~~~~v~tDh~-~~~~l~~~ 428 (455)
T 1rw3_A 410 --------------GQPLVIKAPHA-VEALVKQP 428 (455)
T ss_dssp --------------SSCEEEECSSC-TTTTSSST
T ss_pred --------------CCcEEEEecCh-HHHHhCCC
Confidence 58899999996 66555554
No 18
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ...
Probab=62.14 E-value=16 Score=36.52 Aligned_cols=75 Identities=7% Similarity=-0.112 Sum_probs=43.6
Q ss_pred CceeeccCCCCCCcceEEEEEcce----e--eeccCCCccchhHHHHHH-HHHHHHHHHHhHHHHHHHHHHHHHHHHhhh
Q psy10264 186 DTLCFTDGSKTSDHTGAAYIIGDE----V--CSMKLNPVCSIFTAELVA-IEKCLEKIKDLIRTELISELVAIEKCLEKI 258 (426)
Q Consensus 186 ~~~iytDgS~~~~~~G~g~v~~~~----~--~~~~l~~~~~v~~AEl~A-i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (426)
.+.++||+|.. .++|+++.+. . ..+.-......++-|+.| +..||+.-.....
T Consensus 324 ~~~l~~das~~---g~~g~vl~q~~~~~~~s~~~~~~~~y~~~~~e~la~vv~al~~~r~yl~----------------- 383 (428)
T 2zd1_B 324 DLIAEIQKQGQ---GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIVIW----------------- 383 (428)
T ss_dssp CCEEEEEEEET---TEEEEEEESSTTCEEEEEEEECCSSCTTCHHHHHHHHHHHHHHHHHHHH-----------------
T ss_pred CEEEEEecCCC---CcEEEEEecCCCceeeecccchhhhcccchHHHHHHHHHHhhccceEEE-----------------
Confidence 45899999842 1345555432 1 122222344566677777 9999988766543
Q ss_pred hhhhhhhcccceEEEEecCHHHHHHHHcc
Q psy10264 259 KDLIRTELILQNFIICSDSKSSLQALQNV 287 (426)
Q Consensus 259 ~~~~~~~~~~~~v~I~tDs~~al~~l~~~ 287 (426)
+.....++++||.+.. ..+.+.
T Consensus 384 ------G~~~~~~i~~td~~~~-~~~~~~ 405 (428)
T 2zd1_B 384 ------GKTPKFKLPIQKETWE-TWWTEY 405 (428)
T ss_dssp ------SSCCEEEESSCHHHHH-HHHHHH
T ss_pred ------CCCCcEECCccHHHHH-HHHHhc
Confidence 0112567889999754 334333
No 19
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Probab=21.13 E-value=2.7e+02 Score=28.37 Aligned_cols=51 Identities=8% Similarity=-0.074 Sum_probs=30.5
Q ss_pred CceeeccCCCCCCcceEEEEEcce------eeeccCCCccchhHHHHHH-HHHHHHHHHHh
Q psy10264 186 DTLCFTDGSKTSDHTGAAYIIGDE------VCSMKLNPVCSIFTAELVA-IEKCLEKIKDL 239 (426)
Q Consensus 186 ~~~iytDgS~~~~~~G~g~v~~~~------~~~~~l~~~~~v~~AEl~A-i~~aL~~~~~~ 239 (426)
.+.+|||+|.. ..+|+++.+. ...+........++-|+.| +..+|+.-...
T Consensus 326 ~~~l~~das~~---g~~g~vl~q~~~~~~~~~~~~~~~~y~~~e~e~la~vv~~l~~~~~~ 383 (557)
T 2zd1_A 326 DLIAEIQKQGQ---GQWTYQIYQEPFKNLKTGKYARMRGAHTNDVKQLTEAVQKITTESIV 383 (557)
T ss_dssp CCEEEEEEEET---TEEEEEEEEETTEEEEEEEEECCSCSEECHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEecCCC---CcEEEEEecCCCceeeeeecccccccCCChHHHHHHHHHHhhhhheE
Confidence 45899998843 1236666442 1123333445667788888 88888775443
Done!