BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10269
(108 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LBF|A Chain A, Solution Structure Of The Dimerization Domain Of Human
Ribosomal Protein P1P2 HETERODIMER
Length = 69
Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/53 (58%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 6 ALFLHMSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELISNV 58
AL LH + +ED KI ++KAAGV VEP+WPGLFAKAL VN+ LI NV
Sbjct: 13 ALILHDDEVTVTED--KINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNV 63
>pdb|3IZR|TT Chain t, Localization Of The Large Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
pdb|3IZR|UU Chain u, Localization Of The Large Subunit Ribosomal Proteins
Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
Translating 80s Ribosome
Length = 110
Score = 52.0 bits (123), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 37/58 (63%), Gaps = 12/58 (20%)
Query: 6 ALFLHMSYIVGSEDG-----EKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELISNV 58
AL LH +DG EKI TV+KAAG++VE YWP LFAK LE +V +LI +V
Sbjct: 12 ALILH-------DDGIPITSEKIATVVKAAGIKVEAYWPALFAKLLEKRSVDDLILSV 62
>pdb|3IZS|TT Chain t, Localization Of The Large Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3IZS|UU Chain u, Localization Of The Large Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
Length = 106
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 5 CALFLHMSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELISN 57
AL L S I S EK+ T+ AA V E W +FAKAL+G N+K+L+ N
Sbjct: 10 AALILADSEIEIS--SEKLLTLTNAANVPDENIWADIFAKALDGQNLKDLLVN 60
>pdb|3A1Y|A Chain A, The Structure Of Protein Complex
pdb|3A1Y|B Chain B, The Structure Of Protein Complex
pdb|3A1Y|C Chain C, The Structure Of Protein Complex
pdb|3A1Y|D Chain D, The Structure Of Protein Complex
pdb|3A1Y|E Chain E, The Structure Of Protein Complex
pdb|3A1Y|F Chain F, The Structure Of Protein Complex
Length = 58
Score = 35.4 bits (80), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
Query: 5 CALFLHMSYIVGSE-DGEKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELIS 56
AL LH VG E + E ++ VL+AAGVE E ALEGVN+ E+I
Sbjct: 6 AALLLHS---VGKEINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIE 55
>pdb|3IZS|VV Chain v, Localization Of The Large Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3IZS|WW Chain w, Localization Of The Large Subunit Ribosomal Proteins
Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
Length = 106
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 19 DGEKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELIS 56
D KI+ +L++ G+E+E ALEG +V ELI+
Sbjct: 18 DATKIKAILESVGIEIEDEKVSSVLSALEGKSVDELIT 55
>pdb|3NU7|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Cofactor Pmp
pdb|3NU7|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Cofactor Pmp
pdb|3NUB|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With Product
As The External Aldimine
pdb|3NUB|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With Product
As The External Aldimine
Length = 359
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 9 LHMSYIVGSEDGEKIQTVLKAAGVEVEPYWP 39
++ Y V ++ E +Q LKAAGV ++P
Sbjct: 280 VYAQYTVRMDNRESVQASLKAAGVPTAVHYP 310
>pdb|3NYU|A Chain A, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|B Chain B, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|C Chain C, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
pdb|3NYU|D Chain D, X-Ray Crystal Structure Of The Wbpe (Wlbe)
Aminotransferase From Pseudomonas Aeruginosa As The Plp
Internal Aldimine Adduct With Lysine 185
Length = 367
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 9 LHMSYIVGSEDGEKIQTVLKAAGVEVEPYWP 39
++ Y V ++ E +Q LKAAGV ++P
Sbjct: 280 VYAQYTVRMDNRESVQASLKAAGVPTAVHYP 310
>pdb|3NYS|A Chain A, X-Ray Structure Of The K185a Mutant Of Wbpe (Wlbe) From
Pseudomonas Aeruginosa In Complex With Plp At 1.45
Angstrom Resolution
pdb|3NYT|A Chain A, X-Ray Crystal Structure Of The Wlbe (Wpbe)
Aminotransferase From Pseudomonas Aeruginosa, Mutation
K185a, In Complex With The Plp External Aldimine Adduct
With Udp-3-Amino-2-N-Acetyl-Glucuronic Acid, At 1.3
Angstrom Resolution
Length = 367
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 9 LHMSYIVGSEDGEKIQTVLKAAGVEVEPYWP 39
++ Y V ++ E +Q LKAAGV ++P
Sbjct: 280 VYAQYTVRMDNRESVQASLKAAGVPTAVHYP 310
>pdb|3NU8|A Chain A, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Internal Aldimine
pdb|3NU8|B Chain B, Wbpe, An Aminotransferase From Pseudomonas Aeruginosa
Involved In O- Antigen Assembly In Complex With The
Internal Aldimine
Length = 359
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 9 LHMSYIVGSEDGEKIQTVLKAAGVEVEPYWP 39
++ Y V ++ E +Q LKAAGV ++P
Sbjct: 280 VYAQYTVRMDNRESVQASLKAAGVPTAVHYP 310
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,816,361
Number of Sequences: 62578
Number of extensions: 46854
Number of successful extensions: 117
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 108
Number of HSP's gapped (non-prelim): 10
length of query: 108
length of database: 14,973,337
effective HSP length: 72
effective length of query: 36
effective length of database: 10,467,721
effective search space: 376837956
effective search space used: 376837956
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)