Query psy10269
Match_columns 108
No_of_seqs 121 out of 879
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 22:08:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10269.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10269hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_t 60S acidic ribosomal pr 100.0 2.8E-37 9.7E-42 208.6 3.5 102 2-108 8-110 (110)
2 3izc_t 60S acidic ribosomal pr 100.0 2.4E-35 8.4E-40 198.0 3.2 100 2-108 7-106 (106)
3 3izc_v 60S acidic ribosomal pr 100.0 1.6E-32 5.3E-37 184.4 1.6 97 2-108 3-106 (106)
4 3iz5_v 60S acidic ribosomal pr 100.0 1.8E-32 6.3E-37 185.7 1.6 104 2-108 3-113 (113)
5 2lbf_A 60S acidic ribosomal pr 99.8 2E-20 7E-25 116.7 3.7 59 2-62 9-67 (69)
6 3a1y_A 50S ribosomal protein P 99.7 2.7E-18 9.1E-23 103.8 3.8 55 2-58 3-57 (58)
7 3iz5_s 60S acidic ribosomal pr 99.7 1.3E-18 4.5E-23 135.2 -1.5 97 6-108 206-319 (319)
8 2zkr_g 60S acidic ribosomal pr 99.7 1.1E-18 3.8E-23 135.5 -3.2 101 2-108 199-317 (317)
9 2lbf_B 60S acidic ribosomal pr 99.7 4.8E-17 1.6E-21 101.6 4.5 56 2-58 4-59 (70)
10 3u5i_q A0, L10E, 60S acidic ri 99.6 3.2E-18 1.1E-22 132.7 -2.8 98 3-108 198-312 (312)
11 3j21_k Acidic ribosomal protei 97.4 4.9E-06 1.7E-10 64.9 -3.3 45 5-49 204-250 (339)
12 1vq8_G Acidic ribosomal protei 96.9 0.00014 4.8E-09 57.0 0.0 48 2-49 203-252 (348)
13 3iz5_t 60S acidic ribosomal pr 86.0 0.4 1.4E-05 31.6 2.1 26 21-46 9-34 (110)
14 3a1y_G Acidic ribosomal protei 72.0 0.48 1.6E-05 35.6 -1.2 29 21-49 222-250 (284)
15 2lv7_A Calcium-binding protein 48.8 36 0.0012 20.7 4.8 46 11-56 46-96 (100)
16 2mys_C Myosin; muscle protein, 33.9 78 0.0027 19.0 4.7 41 16-56 23-70 (149)
17 2mys_B Myosin; muscle protein, 32.3 85 0.0029 19.5 4.8 40 17-56 41-82 (166)
18 3kz3_A Repressor protein CI; f 32.1 53 0.0018 18.5 3.4 26 17-42 51-76 (80)
19 1lng_A SRP19, signal recogniti 31.0 41 0.0014 20.8 2.8 22 15-36 26-47 (87)
20 1avs_A Troponin C; muscle cont 30.5 42 0.0014 19.1 2.8 31 16-46 35-65 (90)
21 1tiz_A Calmodulin-related prot 28.2 54 0.0018 17.0 2.8 31 16-46 16-46 (67)
22 2kz2_A Calmodulin, CAM; TR2C, 27.5 72 0.0025 18.6 3.5 31 16-46 44-74 (94)
23 1kvn_A SRP19; RNA binding prot 25.9 51 0.0018 21.0 2.7 21 15-35 29-49 (104)
24 1qx2_A Vitamin D-dependent cal 25.6 64 0.0022 17.3 2.9 30 17-46 23-54 (76)
25 3i5g_C Myosin catalytic light 24.9 78 0.0027 20.4 3.6 47 11-57 95-148 (159)
26 2joj_A Centrin protein; N-term 24.9 40 0.0014 18.3 1.9 31 16-46 22-52 (77)
27 2kn2_A Calmodulin; S MAPK phos 24.6 62 0.0021 18.3 2.8 40 17-56 25-69 (92)
28 1j7q_A CAVP, calcium vector pr 23.9 80 0.0027 17.5 3.1 31 16-46 29-62 (86)
29 1taf_A TFIID TBP associated fa 23.8 71 0.0024 18.8 2.9 27 21-47 5-32 (68)
30 3dtp_E RLC, myosin regulatory 23.7 80 0.0027 20.7 3.5 41 16-56 72-113 (196)
31 3dlu_A SRP19, signal recogniti 23.6 53 0.0018 21.1 2.4 20 15-34 29-48 (106)
32 4ds7_A Calmodulin, CAM; protei 23.5 75 0.0026 19.0 3.1 32 16-47 99-130 (147)
33 3ktw_A SRP19, signal recogniti 23.4 67 0.0023 20.8 2.9 21 15-35 41-61 (109)
34 2b1u_A Calmodulin-like protein 22.9 47 0.0016 17.6 1.9 31 16-46 21-51 (71)
35 1s6j_A CDPK, calcium-dependent 22.2 65 0.0022 17.9 2.5 31 16-46 38-68 (87)
36 2ktg_A Calmodulin, putative; e 22.1 63 0.0022 17.9 2.4 31 16-46 29-59 (85)
37 1jid_A Signal recognition part 21.6 66 0.0022 21.4 2.6 22 15-36 41-62 (128)
38 2hue_C Histone H4; mini beta s 21.6 1.3E+02 0.0045 18.0 3.9 36 8-45 3-39 (84)
39 1ggw_A Protein (CDC4P); light 21.5 1.2E+02 0.004 18.1 3.8 37 11-47 86-122 (140)
40 1wgl_A TOLL-interacting protei 21.2 38 0.0013 19.4 1.2 25 18-42 23-47 (59)
41 2ovk_B RLC, myosin regulatory 20.5 1.5E+02 0.0053 17.9 4.3 42 15-56 99-144 (153)
42 1wlz_A DJBP, CAP-binding prote 20.3 1.4E+02 0.0046 17.2 4.1 43 16-58 39-86 (105)
No 1
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=100.00 E-value=2.8e-37 Score=208.59 Aligned_cols=102 Identities=60% Similarity=0.840 Sum_probs=54.7
Q ss_pred CccchhhcccCCCcCCCCHHHHHHHHHHhCCcccCchhHHHHHHhcCCCHHHHHHhcCCCCCcccccccc-hhhhcccch
Q psy10269 2 GPKCALFLHMSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELISNVGSGAGAGPAAAAP-AAAQAAAPA 80 (108)
Q Consensus 2 ~~~aaLiL~d~~~~~~it~e~I~~vl~aaG~~v~~~~~~~f~~alkgk~i~~li~~~~a~~~~a~~a~~~-~~~~~~~~~ 80 (108)
+.|++||||++++ +||+++|++||+++|++|+++|+.+|++.|+||+|++||+++++||+++++++++ +++++++
T Consensus 8 ~~YaaLiL~d~~~--~itad~I~~ilkAaGveVe~~~~~lfakaL~gknI~eLI~sv~~gg~a~~a~a~~a~~~~~~~-- 83 (110)
T 3iz5_t 8 CTLAALILHDDGI--PITSEKIATVVKAAGIKVEAYWPALFAKLLEKRSVDDLILSVGSGGGGAPAAAAAAPAAGGAA-- 83 (110)
T ss_dssp HHHHHHHHHHHTC--CCSHHHHHHHHHHHTCCCCSHHHHHHHHHHTTCCHHHHHTCCC----------------------
T ss_pred HHHHHHHHcCCCC--CcChHHHHHHHHHhCCcccHHHHHHHHHHcCCCCHHHHHhcCCCccccccccccccccccccc--
Confidence 5799999999999 9999999999999999999999999999999999999999998877654332111 1111111
Q ss_pred hhhhhhhhhhccccccccccCCCCCCCC
Q psy10269 81 AAEAKEDKKKKEESDEGSDDDMGFGLFD 108 (108)
Q Consensus 81 a~~~~~~~~~k~eeeeE~d~dmgfgLFd 108 (108)
+++++++ ++|+|++|||||||||||||
T Consensus 84 ~a~~~~~-e~k~ee~EEsddDmGfgLFd 110 (110)
T 3iz5_t 84 AAEEKKE-EKKEEAKEESDDDMGFSLFD 110 (110)
T ss_dssp ----------------------------
T ss_pred cccchhh-hhccccccccccccccccCC
Confidence 1122333 45567788999999999998
No 2
>3izc_t 60S acidic ribosomal protein RPP11 (P1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_t
Probab=100.00 E-value=2.4e-35 Score=198.02 Aligned_cols=100 Identities=46% Similarity=0.641 Sum_probs=54.3
Q ss_pred CccchhhcccCCCcCCCCHHHHHHHHHHhCCcccCchhHHHHHHhcCCCHHHHHHhcCCCCCcccccccchhhhcccchh
Q psy10269 2 GPKCALFLHMSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELISNVGSGAGAGPAAAAPAAAQAAAPAA 81 (108)
Q Consensus 2 ~~~aaLiL~d~~~~~~it~e~I~~vl~aaG~~v~~~~~~~f~~alkgk~i~~li~~~~a~~~~a~~a~~~~~~~~~~~~a 81 (108)
.+|++||||++++ +||+++|++||+++|++|+++|+.+|++.|+||+|++||+++++++++++++++++++ ++ +
T Consensus 7 ~~YaaLiL~d~~~--~~tad~I~~ilkAaGveVe~~~~~lfa~aL~gknI~eLI~~~~ag~~~~aa~a~~a~~--~~--~ 80 (106)
T 3izc_t 7 LSYAALILADSEI--EISSEKLLTLTNAANVPDENIWADIFAKALDGQNLKDLLVNFSAGAAAPAGVAGGVAG--GE--A 80 (106)
T ss_dssp HHHHHHHHHHHTC--CCSHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHTTCCC----------------------
T ss_pred HHHHHHHHcCCCC--CCCHHHHHHHHHHcCCcccHHHHHHHHHHhcCCCHHHHHHhccCcCcccccccccccc--cc--c
Confidence 3699999999999 9999999999999999999999999999999999999999988766543221111111 11 1
Q ss_pred hhhhhhhhhccccccccccCCCCCCCC
Q psy10269 82 AEAKEDKKKKEESDEGSDDDMGFGLFD 108 (108)
Q Consensus 82 ~~~~~~~~~k~eeeeE~d~dmgfgLFd 108 (108)
++++++ ++|+|++|||||||||||||
T Consensus 81 a~~~~~-~~kee~~EEsddDmGfgLFd 106 (106)
T 3izc_t 81 GEAEAE-KEEEEAKEESDDDMGFGLFD 106 (106)
T ss_dssp ---------------------------
T ss_pred ccchhh-hhhcccccccccccccCcCC
Confidence 111333 44567778999999999998
No 3
>3izc_v 60S acidic ribosomal protein (P2); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_v
Probab=99.97 E-value=1.6e-32 Score=184.35 Aligned_cols=97 Identities=40% Similarity=0.546 Sum_probs=51.6
Q ss_pred CccchhhcccCCCcCCCCHHHHHHHHHHhCCcccCchhHHHHHHhcCCCHHHHHH-------hcCCCCCcccccccchhh
Q psy10269 2 GPKCALFLHMSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELIS-------NVGSGAGAGPAAAAPAAA 74 (108)
Q Consensus 2 ~~~aaLiL~d~~~~~~it~e~I~~vl~aaG~~v~~~~~~~f~~alkgk~i~~li~-------~~~a~~~~a~~a~~~~~~ 74 (108)
|.||.|+|+..++ +||+++|++||+++|++|+++|+.+|++.|+||+|++||+ ++++||+++++++ +++
T Consensus 3 yvaAyLL~~~gG~--e~tad~I~~ilkAaGveVe~~~~~~f~~aL~gkdI~eLIa~g~~klasv~sgg~a~aa~a-~~a- 78 (106)
T 3izc_v 3 YLAAYLLLNAAGN--TPDATKIKAILESVGIEIEDEKVSSVLSALEGKSVDELITEGNEKLAAVPAAGPASAGGA-AAA- 78 (106)
T ss_dssp HHHHHHHHHHHTC--CCTTTTHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHHHSCC----------------------
T ss_pred HHHHHHHHHhcCC--CCCHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCCHHHHHHhhhHHhccCCCccccccccc-ccc-
Confidence 7899999999998 8999999999999999999999999999999999999998 5666655432221 111
Q ss_pred hcccchhhhhhhhhhhccccccccccCCCCCCCC
Q psy10269 75 QAAAPAAAEAKEDKKKKEESDEGSDDDMGFGLFD 108 (108)
Q Consensus 75 ~~~~~~a~~~~~~~~~k~eeeeE~d~dmgfgLFd 108 (108)
+. +++ +++ ++|+|++|||||||||||||
T Consensus 79 --~~--~~~-~~~-e~kee~~EEsdddmGfgLFd 106 (106)
T 3izc_v 79 --SG--DAA-AEE-EKEEEAAEESDDDMGFGLFD 106 (106)
T ss_dssp ----------------------------------
T ss_pred --cc--ccc-ccc-ccccccccccccccCCCCCC
Confidence 11 111 233 45567778999999999998
No 4
>3iz5_v 60S acidic ribosomal protein P21 - P2 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_v
Probab=99.97 E-value=1.8e-32 Score=185.74 Aligned_cols=104 Identities=34% Similarity=0.449 Sum_probs=45.8
Q ss_pred CccchhhcccCCCcCCCCHHHHHHHHHHhCCcccCchhHHHHHHhcCCCHHHHHH-------hcCCCCCcccccccchhh
Q psy10269 2 GPKCALFLHMSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELIS-------NVGSGAGAGPAAAAPAAA 74 (108)
Q Consensus 2 ~~~aaLiL~d~~~~~~it~e~I~~vl~aaG~~v~~~~~~~f~~alkgk~i~~li~-------~~~a~~~~a~~a~~~~~~ 74 (108)
|.||.|+|+-.+. .+||+++|++||+++|++|+++|+.+|++.|+||+|++||+ ++++||++++++++++++
T Consensus 3 yvaAylL~~l~G~-~~ptad~I~~ILkAaGveVe~~~~~lf~~aL~gk~I~eLIa~G~~kl~~v~~gg~aa~a~a~a~a~ 81 (113)
T 3iz5_v 3 FIAAYLLAYLSGN-ASPSAEDLTSILESVGCEIDNEKMELMLSQVKGKDITELLAAGREKFAAVPSGGGGVAVSAAAPAA 81 (113)
T ss_dssp HHHHHHHHHHHTC-CCCTTTTHHHHHHHHTCCCCHHHHHHHHHHHTTCCHHHHHHSCC----------------------
T ss_pred HHHHHHHHHHcCC-CCCCHHHHHHHHHHcCCCcCHHHHHHHHHHhcCCCHHHHHHhhHHHhccCCCcccccccccccccc
Confidence 4555555554332 27999999999999999999999999999999999999997 577766543322111111
Q ss_pred hcccchhhhhhhhhhhccccccccccCCCCCCCC
Q psy10269 75 QAAAPAAAEAKEDKKKKEESDEGSDDDMGFGLFD 108 (108)
Q Consensus 75 ~~~~~~a~~~~~~~~~k~eeeeE~d~dmgfgLFd 108 (108)
++++ ++++++++ ++|+|++|||||||||||||
T Consensus 82 ~~~a-~~a~~~~~-e~k~ee~EEsDdDmGFgLFD 113 (113)
T 3iz5_v 82 GGAA-APAAESKK-EEKVVEKEESDDDMGFSLFD 113 (113)
T ss_dssp ----------------------------------
T ss_pred cccc-cccchhhh-hhhcccccccccccccCcCC
Confidence 1111 11122333 55667888999999999998
No 5
>2lbf_A 60S acidic ribosomal protein P1; ribosome, stalk, P1/P2; NMR {Homo sapiens}
Probab=99.80 E-value=2e-20 Score=116.75 Aligned_cols=59 Identities=53% Similarity=0.865 Sum_probs=56.1
Q ss_pred CccchhhcccCCCcCCCCHHHHHHHHHHhCCcccCchhHHHHHHhcCCCHHHHHHhcCCCC
Q psy10269 2 GPKCALFLHMSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELISNVGSGA 62 (108)
Q Consensus 2 ~~~aaLiL~d~~~~~~it~e~I~~vl~aaG~~v~~~~~~~f~~alkgk~i~~li~~~~a~~ 62 (108)
|+||+|+|++.+. +||+++|++|++++|++|+++|+.+|+++|+||+|++||+++++|+
T Consensus 9 ~~YAAllL~~~g~--~~ta~~I~~il~AaGveve~~~~~lf~~aL~gk~I~elI~~~g~g~ 67 (69)
T 2lbf_A 9 CIYSALILHDDEV--TVTEDKINALIKAAGVNVEPFWPGLFAKALANVNIGSLICNVGAGG 67 (69)
T ss_dssp HHHHHHHHHHHTC--CCCHHHHHHHHHHHTCCCCTHHHHHHHHHTTTSCGGGGGTTTTCCC
T ss_pred HHHHHHHHHcCCC--CCCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHHhccCCC
Confidence 6899999999987 9999999999999999999999999999999999999999987664
No 6
>3a1y_A 50S ribosomal protein P1 (L12P); stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=99.72 E-value=2.7e-18 Score=103.83 Aligned_cols=55 Identities=38% Similarity=0.427 Sum_probs=53.0
Q ss_pred CccchhhcccCCCcCCCCHHHHHHHHHHhCCcccCchhHHHHHHhcCCCHHHHHHhc
Q psy10269 2 GPKCALFLHMSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELISNV 58 (108)
Q Consensus 2 ~~~aaLiL~d~~~~~~it~e~I~~vl~aaG~~v~~~~~~~f~~alkgk~i~~li~~~ 58 (108)
|.||+|+|++.+. +||+++|++|++++|++|+++|+.+|+++|+||+|++||++.
T Consensus 3 ~~yAallL~~~g~--~~t~~~I~~il~aaGveve~~~~~~~~~~L~gk~i~elI~~~ 57 (58)
T 3a1y_A 3 YVYAALLLHSVGK--EINEENLKAVLQAAGVEPEEARIKALVAALEGVNIDEVIEKA 57 (58)
T ss_dssp HHHHHHHHHHTTC--CCCHHHHHHHHHHTTCCCCHHHHHHHHHHHSSCCHHHHHHHH
T ss_pred HHHHHHHHHhCCC--CCCHHHHHHHHHHcCCCccHHHHHHHHHHHCCCCHHHHHHcc
Confidence 6899999999998 999999999999999999999999999999999999999864
No 7
>3iz5_s 60S acidic ribosomal protein P0 (L10P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_s
Probab=99.68 E-value=1.3e-18 Score=135.21 Aligned_cols=97 Identities=33% Similarity=0.410 Sum_probs=36.5
Q ss_pred hhhcccCCCcCCCCH--HHHHHHHHHhCCcccCchhHHHHHHhcCC---------------CHHHHHHhcCCCCCccccc
Q psy10269 6 ALFLHMSYIVGSEDG--EKIQTVLKAAGVEVEPYWPGLFAKALEGV---------------NVKELISNVGSGAGAGPAA 68 (108)
Q Consensus 6 aLiL~d~~~~~~it~--e~I~~vl~aaG~~v~~~~~~~f~~alkgk---------------~i~~li~~~~a~~~~a~~a 68 (108)
.|.|+++++.+.+.. .++.+|+..+|+++..+.||++++++++. +++++|++++++++++|++
T Consensus 206 vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~ala~~~~~~~~~~e~ik~~l~~p~~~a~aa~~a 285 (319)
T 3iz5_s 206 VLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVETEYSYPHADKIKEYLKDPSKFAVAAPVA 285 (319)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHHHHHTCCSTTTHHHHHHHHHHHHHHHHSSSSCCC-----------------------
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHhcCcccCCchhHHHHHhhhhhhccccccc
Confidence 466666665555555 78999999999999999999999999986 8899999998887665443
Q ss_pred ccchhhhcccchhhhhhhhhhhccccccccccCCCCCCCC
Q psy10269 69 AAPAAAQAAAPAAAEAKEDKKKKEESDEGSDDDMGFGLFD 108 (108)
Q Consensus 69 ~~~~~~~~~~~~a~~~~~~~~~k~eeeeE~d~dmgfgLFd 108 (108)
++++++ ++ +++ +++ ++++|++|||||||||||||
T Consensus 286 ~~~~~~--~~--~~~-~~~-~~~~e~~ee~d~d~gf~lfd 319 (319)
T 3iz5_s 286 ADSGAA--AP--SAA-KEE-EKKEEPEEESDGDLGMSLFD 319 (319)
T ss_dssp ----------------------------------------
T ss_pred cccccc--cc--ccc-ccc-cccccccccccccCCCCCCC
Confidence 322111 11 111 223 44566778899999999998
No 8
>2zkr_g 60S acidic ribosomal protein P0; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=99.67 E-value=1.1e-18 Score=135.51 Aligned_cols=101 Identities=29% Similarity=0.294 Sum_probs=23.1
Q ss_pred CccchhhcccCCCcCCCCH--HHHHHHHHHhCCcccCchhHHHHHHhcCC---------------CHHHHHHhcCCCCCc
Q psy10269 2 GPKCALFLHMSYIVGSEDG--EKIQTVLKAAGVEVEPYWPGLFAKALEGV---------------NVKELISNVGSGAGA 64 (108)
Q Consensus 2 ~~~aaLiL~d~~~~~~it~--e~I~~vl~aaG~~v~~~~~~~f~~alkgk---------------~i~~li~~~~a~~~~ 64 (108)
|+=..|.|+++++.+.+.. .++.+|+..+|+++..++||++++++++. +|+++|.++++++++
T Consensus 199 ~~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~~pt~~s~~~~i~~a~~~~~ala~~~~~~~~ea~~vk~~l~~~~~~~~a 278 (317)
T 2zkr_g 199 YNPEVLDITEETLHSRFLEGVRNVASVCLQIGYPTVASVPHSIINGYKRVLALSVETDYTFPLAEKVKAFLADPSAFVAA 278 (317)
T ss_dssp --------------------------------------------------------------CHHHHHTTTHHHHHHHHH
T ss_pred cchHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhhcccChhhhhhHHHHHhccCccccc
Confidence 3445688898888888877 89999999999999999999999999876 778999999876543
Q ss_pred -ccccccchhhhcccchhhhhhhhhhhccccccccccCCCCCCCC
Q psy10269 65 -GPAAAAPAAAQAAAPAAAEAKEDKKKKEESDEGSDDDMGFGLFD 108 (108)
Q Consensus 65 -a~~a~~~~~~~~~~~~a~~~~~~~~~k~eeeeE~d~dmgfgLFd 108 (108)
++++++++++ + +++++++ ++++||+||+||||||||||
T Consensus 279 ~a~~a~~~~~~--~---~~~~~~~-~~~~ee~ee~d~d~gf~lfd 317 (317)
T 2zkr_g 279 APVAAATTAAP--A---AAAAPAK-VEAKEESEESDEDMGFGLFD 317 (317)
T ss_dssp HHHHTTSSHHH--H---HHHHHHS-TTHHHHTSSCC---------
T ss_pred ccccccccccc--c---ccccccc-ccccCCccccccccCcCCCC
Confidence 2222211111 1 1111233 44556778899999999998
No 9
>2lbf_B 60S acidic ribosomal protein P2; ribosome, stalk, P1/P2; NMR {Homo sapiens} PDB: 2w1o_A
Probab=99.67 E-value=4.8e-17 Score=101.65 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=52.3
Q ss_pred CccchhhcccCCCcCCCCHHHHHHHHHHhCCcccCchhHHHHHHhcCCCHHHHHHhc
Q psy10269 2 GPKCALFLHMSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEGVNVKELISNV 58 (108)
Q Consensus 2 ~~~aaLiL~d~~~~~~it~e~I~~vl~aaG~~v~~~~~~~f~~alkgk~i~~li~~~ 58 (108)
|.||+|+|++++. .+||+++|++|++++|++|+++|+.+|+++|+||+|++||++.
T Consensus 4 yvyA~Lll~~~g~-~~~ta~~I~~il~aaGvevd~~~~~~~~~aL~gk~i~elIa~g 59 (70)
T 2lbf_B 4 YVASYLLAALGGN-SSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQG 59 (70)
T ss_dssp THHHHHHHHHHTC-SSCCHHHHHHHHHTTTCCCCTTHHHHHHHHHSSCCHHHHHTTC
T ss_pred HHHHHHHHHhCCC-CCCCHHHHHHHHHHcCCCccHHHHHHHHHHHcCCCHHHHHHHH
Confidence 8899999999872 4799999999999999999999999999999999999999863
No 10
>3u5i_q A0, L10E, 60S acidic ribosomal protein P0; translation, ribosome, ribosomal R ribosomal protein, STM1; 3.00A {Saccharomyces cerevisiae} PDB: 4b6a_q 3izc_s 3izs_s 3j16_G* 3o5h_M 3jyw_8
Probab=99.65 E-value=3.2e-18 Score=132.65 Aligned_cols=98 Identities=27% Similarity=0.367 Sum_probs=13.8
Q ss_pred ccchhhcccCCCcCCCCH--HHHHHHHHHhCCcccCchhHHHHHHhcCC---------------CHHHHHHhcCCCCCcc
Q psy10269 3 PKCALFLHMSYIVGSEDG--EKIQTVLKAAGVEVEPYWPGLFAKALEGV---------------NVKELISNVGSGAGAG 65 (108)
Q Consensus 3 ~~aaLiL~d~~~~~~it~--e~I~~vl~aaG~~v~~~~~~~f~~alkgk---------------~i~~li~~~~a~~~~a 65 (108)
+=-.|.|+++++.+.+.. .++.+|+..+|+++..+.||++++++++. .++++|++++++++++
T Consensus 198 ~~~~L~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~k~~~a~a~~~~~~~~~~~~ik~~la~p~a~a~aa 277 (312)
T 3u5i_q 198 PXXXXXXXXXXXXXXXXXXXXXXXSISLAIGYPTLPSVGHTLINNYKDLLAVAIAASYHYPEIEDLVDRIENPEKYAAAA 277 (312)
T ss_dssp CSTTTSCCSSTTTHHHHHHHTTCC--------------------------------------------------------
T ss_pred ccccccccccccccccccchhhHhhhHHhhCCCcHHHHHHHHHHHHHHHHHHHHhhcccCccchhHHHHHhChhhhhccc
Confidence 334577777776555544 67889999999999999999999999987 7889999999887665
Q ss_pred cccccchhhhcccchhhhhhhhhhhccccccccccCCCCCCCC
Q psy10269 66 PAAAAPAAAQAAAPAAAEAKEDKKKKEESDEGSDDDMGFGLFD 108 (108)
Q Consensus 66 ~~a~~~~~~~~~~~~a~~~~~~~~~k~eeeeE~d~dmgfgLFd 108 (108)
+++++++ + + +++ +++ ++++|++|||||||||||||
T Consensus 278 ~~a~~~~-~--~---~~~-~~~-~~~~e~~ee~d~d~gf~lfd 312 (312)
T 3u5i_q 278 PAATSAA-S--G---DAA-PAE-EAAAEEEEESDDDMGFGLFD 312 (312)
T ss_dssp -------------------------------------------
T ss_pred ccccccc-c--c---ccc-ccc-cccccccccccccCCCCCCC
Confidence 5433221 1 1 111 223 44556778899999999998
No 11
>3j21_k Acidic ribosomal protein P0 homolog; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=97.45 E-value=4.9e-06 Score=64.87 Aligned_cols=45 Identities=9% Similarity=-0.037 Sum_probs=7.8
Q ss_pred chhhcccCCCcCCCCH--HHHHHHHHHhCCcccCchhHHHHHHhcCC
Q psy10269 5 CALFLHMSYIVGSEDG--EKIQTVLKAAGVEVEPYWPGLFAKALEGV 49 (108)
Q Consensus 5 aaLiL~d~~~~~~it~--e~I~~vl~aaG~~v~~~~~~~f~~alkgk 49 (108)
-.|.|+++++.+.+.. .++.+|+..+||++..+.+|++++++++.
T Consensus 204 ~~L~i~~e~~~~~~~~a~~~a~~lsl~~~ypT~~svp~~i~~a~k~~ 250 (339)
T 3j21_k 204 DVLAIDESEYINMLQKAYMHAFNLAVNIAYPTPQTIEAIIQKAFLNA 250 (339)
T ss_dssp HHHCCCHHHHHHHC---------------------------------
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3456666655555555 78899999999999999999999999987
No 12
>1vq8_G Acidic ribosomal protein P0 homolog; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: j.84.1.1 PDB: 1k73_I* 1k8a_I* 1k9m_I* 1kc8_I* 1kd1_I* 1kqs_G* 1m1k_I* 1m90_I* 1n8r_I* 1nji_I* 1q7y_I* 1q81_I* 1q82_I* 1q86_I* 1qvf_G 1qvg_G 1s72_G* 1vq4_G* 1vq5_G* 1vq6_G* ...
Probab=96.91 E-value=0.00014 Score=56.95 Aligned_cols=48 Identities=8% Similarity=-0.046 Sum_probs=0.0
Q ss_pred CccchhhcccCCCcCCCCH--HHHHHHHHHhCCcccCchhHHHHHHhcCC
Q psy10269 2 GPKCALFLHMSYIVGSEDG--EKIQTVLKAAGVEVEPYWPGLFAKALEGV 49 (108)
Q Consensus 2 ~~~aaLiL~d~~~~~~it~--e~I~~vl~aaG~~v~~~~~~~f~~alkgk 49 (108)
|+=-.|.|+++++.+.+.. .++.+|+..+|+|+..+.||++++++++.
T Consensus 203 ~~~~vL~i~~e~~~~~~~~~~~~~~~lsl~~~ypt~~s~~~~i~~a~~~~ 252 (348)
T 1vq8_G 203 FEPEELELDIDEYRSDIQAAAGRAFNLSVNADYPTATTAPTMLQSDRGNA 252 (348)
T ss_dssp --------------------------------------------------
T ss_pred cCHHHccCCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 3445688888888888877 88999999999999999999999999887
No 13
>3iz5_t 60S acidic ribosomal protein P11 - P1 (L12P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_t
Probab=86.01 E-value=0.4 Score=31.62 Aligned_cols=26 Identities=15% Similarity=0.133 Sum_probs=19.1
Q ss_pred HHHHHHHHHhCCcccCchhHHHHHHh
Q psy10269 21 EKIQTVLKAAGVEVEPYWPGLFAKAL 46 (108)
Q Consensus 21 e~I~~vl~aaG~~v~~~~~~~f~~al 46 (108)
-+..-||.-.|+++....+..++++.
T Consensus 9 ~YaaLiL~d~~~~itad~I~~ilkAa 34 (110)
T 3iz5_t 9 TLAALILHDDGIPITSEKIATVVKAA 34 (110)
T ss_dssp HHHHHHHHHHTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCcChHHHHHHHHHh
Confidence 44555677778888888888887765
No 14
>3a1y_G Acidic ribosomal protein P0; stalk, helix SPIN, ribonucleoprotein; 2.13A {Pyrococcus horikoshii}
Probab=72.03 E-value=0.48 Score=35.57 Aligned_cols=29 Identities=7% Similarity=-0.036 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCcccCchhHHHHHHhcCC
Q psy10269 21 EKIQTVLKAAGVEVEPYWPGLFAKALEGV 49 (108)
Q Consensus 21 e~I~~vl~aaG~~v~~~~~~~f~~alkgk 49 (108)
.++.+|+..+|+++..+.+|++.+++++.
T Consensus 222 ~~a~~lsl~~~~pt~~s~~~~i~ka~~~~ 250 (284)
T 3a1y_G 222 MHAFNLAVNIAYPTPETIEAIIQKAFLNA 250 (284)
T ss_dssp HHHHHHHHHHTCCCTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 67788999999999999999999999764
No 15
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=48.84 E-value=36 Score=20.68 Aligned_cols=46 Identities=13% Similarity=0.128 Sum_probs=32.9
Q ss_pred cCCCcCCCCHHHHHHHHHHhCCcccCchhHHHHHHhcC-----CCHHHHHH
Q psy10269 11 MSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEG-----VNVKELIS 56 (108)
Q Consensus 11 d~~~~~~it~e~I~~vl~aaG~~v~~~~~~~f~~alkg-----k~i~~li~ 56 (108)
|.+-.+.|+.+++..+++..|..+...-...+++.+.. .++.+.+.
T Consensus 46 D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~~D~d~dG~I~~~EF~~ 96 (100)
T 2lv7_A 46 DRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQRLDMDGDGQVDFEEFVT 96 (100)
T ss_dssp CSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHHHCSSCSSSBCHHHHHH
T ss_pred cCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCeEeHHHHHH
Confidence 33334489999999999999998877777777776621 25555553
No 16
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=33.90 E-value=78 Score=19.01 Aligned_cols=41 Identities=7% Similarity=0.089 Sum_probs=29.7
Q ss_pred CCCCHHHHHHHHHHhCCcccCchhHHHHHHh-------cCCCHHHHHH
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYWPGLFAKAL-------EGVNVKELIS 56 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~~~~f~~al-------kgk~i~~li~ 56 (108)
+.++.+++..++...|..........+.+.+ ...++.+++.
T Consensus 23 G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~~~~d~~~g~i~~~eF~~ 70 (149)
T 2mys_C 23 AKITASQVGDIARALGQNPTNAEINKILGNPSKEEMNAAAITFEEFLP 70 (149)
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccccCCcCcHHHHHH
Confidence 3789999999999999887766666666666 2345556554
No 17
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=32.31 E-value=85 Score=19.52 Aligned_cols=40 Identities=18% Similarity=0.209 Sum_probs=27.9
Q ss_pred CCCHHHHHHHHHHhCC-cccCchhHHHHHHhcCC-CHHHHHH
Q psy10269 17 SEDGEKIQTVLKAAGV-EVEPYWPGLFAKALEGV-NVKELIS 56 (108)
Q Consensus 17 ~it~e~I~~vl~aaG~-~v~~~~~~~f~~alkgk-~i~~li~ 56 (108)
.++.+.+..++...|. .........+++...|. ++.+++.
T Consensus 41 ~i~~~el~~~l~~~g~~~~~~~~~~~l~~~~dg~i~~~eF~~ 82 (166)
T 2mys_B 41 IIDKDDLRETFAAMGRLNVKNEELDAMIKEASGPINFTVFLT 82 (166)
T ss_pred cCCHHHHHHHHHHhCCCCCCHHHHHHHHHHCCCCcCHHHHHH
Confidence 7999999999999998 76665555555545443 5555543
No 18
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=32.14 E-value=53 Score=18.55 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCCHHHHHHHHHHhCCcccCchhHHH
Q psy10269 17 SEDGEKIQTVLKAAGVEVEPYWPGLF 42 (108)
Q Consensus 17 ~it~e~I~~vl~aaG~~v~~~~~~~f 42 (108)
.|+.+.+.+|++..|++++...+.+.
T Consensus 51 ~~~~~~~~~ia~~l~v~~~~l~~~l~ 76 (80)
T 3kz3_A 51 ALNAYNAALLAKILKVSVEEFSPSIA 76 (80)
T ss_dssp CCCHHHHHHHHHHHTSCGGGTCHHHH
T ss_pred CCCHHHHHHHHHHhCCCHHHHhHHHH
Confidence 67889999999999999887776654
No 19
>1lng_A SRP19, signal recognition particle 19 kDa protein; protein-RNA complex, signaling protein/RNA complex; 2.30A {Methanocaldococcus jannaschii} SCOP: d.201.1.1 PDB: 2v3c_A 3ndb_A 1l9a_A*
Probab=30.98 E-value=41 Score=20.80 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=18.6
Q ss_pred cCCCCHHHHHHHHHHhCCcccC
Q psy10269 15 VGSEDGEKIQTVLKAAGVEVEP 36 (108)
Q Consensus 15 ~~~it~e~I~~vl~aaG~~v~~ 36 (108)
++.||.++|..+++..|+++.-
T Consensus 26 V~~P~~~EI~~a~~~lgl~~~~ 47 (87)
T 1lng_A 26 IEKPSLKDIEKALKKLGLEPKI 47 (87)
T ss_dssp BSSCCHHHHHHHHHHTTCCCEE
T ss_pred ccCCCHHHHHHHHHHcCCCeEE
Confidence 4588999999999999997643
No 20
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=30.46 E-value=42 Score=19.05 Aligned_cols=31 Identities=13% Similarity=0.151 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHhCCcccCchhHHHHHHh
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYWPGLFAKAL 46 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~~~~f~~al 46 (108)
+.++.+++..+++..|.++.......+++.+
T Consensus 35 G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~ 65 (90)
T 1avs_A 35 GDISTKELGTVMRMLGQNPTKEELDAIIEEV 65 (90)
T ss_dssp SEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3789999999999999987777777666666
No 21
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=28.15 E-value=54 Score=17.04 Aligned_cols=31 Identities=13% Similarity=-0.051 Sum_probs=24.9
Q ss_pred CCCCHHHHHHHHHHhCCcccCchhHHHHHHh
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYWPGLFAKAL 46 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~~~~f~~al 46 (108)
+.++.+.+..++...|.++.......+++.+
T Consensus 16 G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 46 (67)
T 1tiz_A 16 GKLSLDEFREVALAFSPYFTQEDIVKFFEEI 46 (67)
T ss_dssp SCEEHHHHHHHHHHTCTTSCHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3789999999999999887766666666666
No 22
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=27.46 E-value=72 Score=18.56 Aligned_cols=31 Identities=10% Similarity=0.117 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHHHhCCcccCchhHHHHHHh
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYWPGLFAKAL 46 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~~~~f~~al 46 (108)
+.++.+++..+++..|..........+++.+
T Consensus 44 G~I~~~El~~~l~~~g~~~~~~e~~~l~~~~ 74 (94)
T 2kz2_A 44 GYISAAELRHVMTNLGEKLTDEEVDEMIREA 74 (94)
T ss_dssp SCBCHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3789999999999999877666666666655
No 23
>1kvn_A SRP19; RNA binding protein; NMR {Archaeoglobus fulgidus} SCOP: d.201.1.1 PDB: 1kvv_A
Probab=25.95 E-value=51 Score=21.04 Aligned_cols=21 Identities=14% Similarity=0.158 Sum_probs=18.1
Q ss_pred cCCCCHHHHHHHHHHhCCccc
Q psy10269 15 VGSEDGEKIQTVLKAAGVEVE 35 (108)
Q Consensus 15 ~~~it~e~I~~vl~aaG~~v~ 35 (108)
++.||.++|..++...|+++.
T Consensus 29 V~nP~~~EI~~a~~~Lgl~~~ 49 (104)
T 1kvn_A 29 VPNVKLHELVEASKELGLKFR 49 (104)
T ss_dssp CSSCCHHHHHHHHHHHTSSEE
T ss_pred ccCCCHHHHHHHHHHcCCCeE
Confidence 458899999999999999763
No 24
>1qx2_A Vitamin D-dependent calcium-binding protein, INTE; EF-hand (helix-loop-helix) calcium binding protein, four-HEL domain, protein engineering; HET: FME; 1.44A {Bos taurus} SCOP: a.39.1.1 PDB: 1kcy_A 1kqv_A 1ksm_A 1n65_A 1ht9_A 4icb_A 1cdn_A 1clb_A 2bca_A 1ig5_A 1igv_A 3icb_A 1d1o_A 1b1g_A 2bcb_A 1boc_A 1bod_A
Probab=25.61 E-value=64 Score=17.27 Aligned_cols=30 Identities=10% Similarity=0.100 Sum_probs=24.1
Q ss_pred CCCHHHHHHHHHHhCCcc--cCchhHHHHHHh
Q psy10269 17 SEDGEKIQTVLKAAGVEV--EPYWPGLFAKAL 46 (108)
Q Consensus 17 ~it~e~I~~vl~aaG~~v--~~~~~~~f~~al 46 (108)
.++.+++..+++..|.++ .......+++.+
T Consensus 23 ~i~~~el~~~l~~~g~~~~~~~~~~~~l~~~~ 54 (76)
T 1qx2_A 23 QISKEELKLVMQTLGPSLLKGMSTLDEMIEEV 54 (76)
T ss_dssp SEEHHHHHHHHHHHGGGSCTTSCSHHHHHHHH
T ss_pred eECHHHHHHHHHHhCCCcCCCHHHHHHHHHHh
Confidence 789999999999999877 666666666655
No 25
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=24.93 E-value=78 Score=20.40 Aligned_cols=47 Identities=15% Similarity=0.101 Sum_probs=34.4
Q ss_pred cCCCcCCCCHHHHHHHHHHhCCcccCchhHHHHHHhc---C----CCHHHHHHh
Q psy10269 11 MSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALE---G----VNVKELISN 57 (108)
Q Consensus 11 d~~~~~~it~e~I~~vl~aaG~~v~~~~~~~f~~alk---g----k~i~~li~~ 57 (108)
|.+-.+.|+.+.+..+++..|.++...-...+++.+. + .++.+++.-
T Consensus 95 D~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~~~~D~~~d~dG~I~~~EF~~~ 148 (159)
T 3i5g_C 95 DREGQGLISSAEIRNVLKMLGERITEDQCNDIFTFCDIREDIDGNIKYEDLMKK 148 (159)
T ss_dssp CTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHHHTTCCCCSSCCEEHHHHHHH
T ss_pred hcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCcCCCCCCeEeHHHHHHH
Confidence 3333347999999999999999988877777777664 2 366676654
No 26
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=24.88 E-value=40 Score=18.29 Aligned_cols=31 Identities=19% Similarity=0.193 Sum_probs=24.7
Q ss_pred CCCCHHHHHHHHHHhCCcccCchhHHHHHHh
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYWPGLFAKAL 46 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~~~~f~~al 46 (108)
+.++.+.+..+++..|.++.......+++.+
T Consensus 22 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 52 (77)
T 2joj_A 22 GSIDYHELKVAMRALGFDVKKPEILELMNEY 52 (77)
T ss_dssp SEEEHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 3789999999999999887766666666655
No 27
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=24.61 E-value=62 Score=18.25 Aligned_cols=40 Identities=15% Similarity=0.184 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHhCCcccCchhHHHHHHhc-C----CCHHHHHH
Q psy10269 17 SEDGEKIQTVLKAAGVEVEPYWPGLFAKALE-G----VNVKELIS 56 (108)
Q Consensus 17 ~it~e~I~~vl~aaG~~v~~~~~~~f~~alk-g----k~i~~li~ 56 (108)
.++.+++..++...|.++.......+++.+. + .++.+++.
T Consensus 25 ~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~ 69 (92)
T 2kn2_A 25 YISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVK 69 (92)
T ss_dssp EECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHH
T ss_pred eEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHH
Confidence 7899999999999998877777777776664 2 35556554
No 28
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=23.90 E-value=80 Score=17.54 Aligned_cols=31 Identities=10% Similarity=-0.146 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHHHhCCcccCch---hHHHHHHh
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYW---PGLFAKAL 46 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~---~~~f~~al 46 (108)
+.++.+++..+++..|....... ...+++.+
T Consensus 29 G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~~~ 62 (86)
T 1j7q_A 29 NIAPVSDTMDMLTKLGQTYTKRETEAIMKEARGP 62 (86)
T ss_dssp SCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHHCS
T ss_pred CcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHh
Confidence 37999999999999998766555 44444444
No 29
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=23.82 E-value=71 Score=18.77 Aligned_cols=27 Identities=26% Similarity=0.226 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCC-cccCchhHHHHHHhc
Q psy10269 21 EKIQTVLKAAGV-EVEPYWPGLFAKALE 47 (108)
Q Consensus 21 e~I~~vl~aaG~-~v~~~~~~~f~~alk 47 (108)
.-|..||+..|+ .+++..++.+...+.
T Consensus 5 ~~i~~iLk~~G~~~~~~~v~~~L~e~~~ 32 (68)
T 1taf_A 5 QVIMSILKELNVQEYEPRVVNQLLEFTF 32 (68)
T ss_dssp HHHHHHHHHTTCCCBCTHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcccCHHHHHHHHHHHH
Confidence 568899999999 799999998887653
No 30
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=23.66 E-value=80 Score=20.73 Aligned_cols=41 Identities=12% Similarity=0.156 Sum_probs=29.3
Q ss_pred CCCCHHHHHHHHHHhCCcccCchhHHHHHHhcC-CCHHHHHH
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEG-VNVKELIS 56 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~~~~f~~alkg-k~i~~li~ 56 (108)
+.|+.+.+..++...|+.........+++.+.| .++.+++.
T Consensus 72 G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~~g~i~~~eF~~ 113 (196)
T 3dtp_E 72 GFISKNDIRATFDSLGRLCTEQELDSMVAEAPGPINFTMFLT 113 (196)
T ss_dssp SBCCHHHHHHHHHTTSCCCCHHHHHHHHTTSSSCCBHHHHHH
T ss_pred CcCCHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCcHHHHHH
Confidence 379999999999999988766666666555544 35555554
No 31
>3dlu_A SRP19, signal recognition particle 19 kDa protein; protein-RNA, cytoplasm, ribonucleoprotein, RNA-binding, RNA binding protein; 1.80A {Pyrococcus furiosus} PDB: 3dlv_B
Probab=23.61 E-value=53 Score=21.10 Aligned_cols=20 Identities=25% Similarity=0.174 Sum_probs=18.2
Q ss_pred cCCCCHHHHHHHHHHhCCcc
Q psy10269 15 VGSEDGEKIQTVLKAAGVEV 34 (108)
Q Consensus 15 ~~~it~e~I~~vl~aaG~~v 34 (108)
++.||..+|..++...|+++
T Consensus 29 V~nPt~~EI~~a~~~lgl~~ 48 (106)
T 3dlu_A 29 VESPRVEEIVRAAEELKFKV 48 (106)
T ss_dssp BSSCCHHHHHHHHHHTTCEE
T ss_pred ccCCCHHHHHHHHHHcCCCc
Confidence 45799999999999999988
No 32
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=23.46 E-value=75 Score=19.03 Aligned_cols=32 Identities=13% Similarity=0.177 Sum_probs=26.4
Q ss_pred CCCCHHHHHHHHHHhCCcccCchhHHHHHHhc
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYWPGLFAKALE 47 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~~~~f~~alk 47 (108)
+.++.+.+..++...|.++.......+++.+.
T Consensus 99 G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d 130 (147)
T 4ds7_A 99 GLISAAELKHVLTSIGEKLTDAEVDEMLREVS 130 (147)
T ss_dssp SEECHHHHHHHHHHTTCCCCHHHHHHHHHHHS
T ss_pred CeECHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Confidence 37899999999999998888777777777664
No 33
>3ktw_A SRP19, signal recognition particle 19 kDa protein; ribonucleoprotein complex, RNA-RNA tertiary interactions, AS loop, 7S RNA; 3.20A {Sulfolobus solfataricus}
Probab=23.37 E-value=67 Score=20.79 Aligned_cols=21 Identities=14% Similarity=0.172 Sum_probs=18.4
Q ss_pred cCCCCHHHHHHHHHHhCCccc
Q psy10269 15 VGSEDGEKIQTVLKAAGVEVE 35 (108)
Q Consensus 15 ~~~it~e~I~~vl~aaG~~v~ 35 (108)
++.||..+|..++...|+++.
T Consensus 41 V~nP~~~EI~~a~~~Lgl~~~ 61 (109)
T 3ktw_A 41 PYKIKTEELVSTLRELGLDPI 61 (109)
T ss_dssp SSCCCHHHHHHHHHHTTCCCE
T ss_pred CCCCCHHHHHHHHHHcCCCeE
Confidence 568999999999999999764
No 34
>2b1u_A Calmodulin-like protein 5; CLSP, calmodulin-like SKIN protein, solution structure, backbone dynamic, structural genomics; NMR {Homo sapiens}
Probab=22.89 E-value=47 Score=17.60 Aligned_cols=31 Identities=6% Similarity=0.086 Sum_probs=24.0
Q ss_pred CCCCHHHHHHHHHHhCCcccCchhHHHHHHh
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYWPGLFAKAL 46 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~~~~f~~al 46 (108)
+.++.+.+..+++..|.++.......+++.+
T Consensus 21 G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~ 51 (71)
T 2b1u_A 21 GHITVDELRRAMAGLGQPLPQEELDAMIREA 51 (71)
T ss_dssp SEEEHHHHHHHGGGTTCSSCHHHHHHHHHHC
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3789999999999999877666666665555
No 35
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=22.18 E-value=65 Score=17.89 Aligned_cols=31 Identities=19% Similarity=0.103 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHhCCcccCchhHHHHHHh
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYWPGLFAKAL 46 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~~~~f~~al 46 (108)
+.++.+++..+++..|.++.......+++.+
T Consensus 38 G~i~~~el~~~l~~~~~~~~~~~~~~l~~~~ 68 (87)
T 1s6j_A 38 GTITFDELKDGLKRVGSELMESEIKDLMDAA 68 (87)
T ss_dssp SCEEHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3789999999999999887776666666655
No 36
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=22.09 E-value=63 Score=17.85 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=25.0
Q ss_pred CCCCHHHHHHHHHHhCCcccCchhHHHHHHh
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYWPGLFAKAL 46 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~~~~f~~al 46 (108)
+.++.+.+..+++..|.++.......+++.+
T Consensus 29 G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~ 59 (85)
T 2ktg_A 29 NKLTAEELGTVMRALGANPTKQKISEIVKDY 59 (85)
T ss_dssp SEEEHHHHHHHHHTTSSCCCHHHHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 3789999999999999887777677666666
No 37
>1jid_A Signal recognition particle 19 kDa protein; signal recognition particle (SRP), protein-RNA complex, GGAG tetraloop, signaling protein/RNA complex; HET: 5BU A23; 1.80A {Homo sapiens} SCOP: d.201.1.1 PDB: 3ktv_B* 1mfq_B* 1ry1_B* 2go5_B 2j37_B
Probab=21.64 E-value=66 Score=21.37 Aligned_cols=22 Identities=32% Similarity=0.339 Sum_probs=18.6
Q ss_pred cCCCCHHHHHHHHHHhCCcccC
Q psy10269 15 VGSEDGEKIQTVLKAAGVEVEP 36 (108)
Q Consensus 15 ~~~it~e~I~~vl~aaG~~v~~ 36 (108)
++.||..+|..+++..|+++.-
T Consensus 41 VenPt~~EI~~a~~~Lgl~~~v 62 (128)
T 1jid_A 41 VENPTATEIQDVCSAVGLNVFL 62 (128)
T ss_dssp BSSCCHHHHHHHHHHTTCCEEE
T ss_pred ccCCCHHHHHHHHHHcCCCeEE
Confidence 4588999999999999997643
No 38
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=21.63 E-value=1.3e+02 Score=17.96 Aligned_cols=36 Identities=11% Similarity=0.047 Sum_probs=26.3
Q ss_pred hcccCCCcCCCCHHHHHHHHHHhCCc-ccCchhHHHHHH
Q psy10269 8 FLHMSYIVGSEDGEKIQTVLKAAGVE-VEPYWPGLFAKA 45 (108)
Q Consensus 8 iL~d~~~~~~it~e~I~~vl~aaG~~-v~~~~~~~f~~a 45 (108)
+|.|+.. .++...|..|.+..|+. +.......+...
T Consensus 3 ~~r~~~~--~ip~~~I~Riar~~Gv~rIs~da~~~l~~~ 39 (84)
T 2hue_C 3 VLRDNIQ--GITKPAIRRLARRGGVKRISGLIYEETRGV 39 (84)
T ss_dssp CGGGGCC--SSCHHHHHHHHHHTTCCEECTTHHHHHHHH
T ss_pred cccccCC--CCCHHHHHHHHHHcCchhccHHHHHHHHHH
Confidence 3556665 78999999999999994 665555555543
No 39
>1ggw_A Protein (CDC4P); light chain, cytokinesis, cell cycle, EF-hand; NMR {Schizosaccharomyces pombe} SCOP: a.39.1.5
Probab=21.45 E-value=1.2e+02 Score=18.13 Aligned_cols=37 Identities=14% Similarity=0.036 Sum_probs=26.6
Q ss_pred cCCCcCCCCHHHHHHHHHHhCCcccCchhHHHHHHhc
Q psy10269 11 MSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALE 47 (108)
Q Consensus 11 d~~~~~~it~e~I~~vl~aaG~~v~~~~~~~f~~alk 47 (108)
|.+-.+.+|.+.+..+++..|.++.......+++.+.
T Consensus 86 D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~d 122 (140)
T 1ggw_A 86 DKDATGMIGVGELRYVLTSLGEKLSNEEMDELLKGVP 122 (140)
T ss_dssp CSSCSSCCCHHHHHHHHHHHHSCSCHHHHHHHHHHTT
T ss_pred CCCCCCcEeHHHHHHHHHHcCCCCCHHHHHHHHHhcc
Confidence 3333347999999999999998776666666666553
No 40
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=21.19 E-value=38 Score=19.38 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=14.2
Q ss_pred CCHHHHHHHHHHhCCcccCchhHHH
Q psy10269 18 EDGEKIQTVLKAAGVEVEPYWPGLF 42 (108)
Q Consensus 18 it~e~I~~vl~aaG~~v~~~~~~~f 42 (108)
++.+-|++||++.+..++..+-.++
T Consensus 23 ld~~~I~~vL~a~~gdvd~aI~~LL 47 (59)
T 1wgl_A 23 MDQEVIRSVLEAQRGNKDAAINSLL 47 (59)
T ss_dssp SCHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3556666666666666655544433
No 41
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=20.49 E-value=1.5e+02 Score=17.93 Aligned_cols=42 Identities=12% Similarity=0.035 Sum_probs=30.6
Q ss_pred cCCCCHHHHHHHHHHhCCcccCchhHHHHHHhcC----CCHHHHHH
Q psy10269 15 VGSEDGEKIQTVLKAAGVEVEPYWPGLFAKALEG----VNVKELIS 56 (108)
Q Consensus 15 ~~~it~e~I~~vl~aaG~~v~~~~~~~f~~alkg----k~i~~li~ 56 (108)
.+.||.+.+..++...|.++.......+++.+.. .+..+++.
T Consensus 99 ~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~d~~dg~I~~~eF~~ 144 (153)
T 2ovk_B 99 QGFIPEDYLKDLLENMGDNFSKEEIKNVWKDAPLKNKQFNYNKMVD 144 (153)
T ss_dssp SSCCCHHHHHHHHHHSSSCCCHHHHHHHHHHCCEETTEECHHHHHH
T ss_pred CCeEcHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCCCEEeHHHHHH
Confidence 3489999999999999988877777777766631 24555543
No 42
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=20.30 E-value=1.4e+02 Score=17.21 Aligned_cols=43 Identities=5% Similarity=0.025 Sum_probs=32.4
Q ss_pred CCCCHHHHHHHHHHhCCcccCchhHHHHHHhc-C----CCHHHHHHhc
Q psy10269 16 GSEDGEKIQTVLKAAGVEVEPYWPGLFAKALE-G----VNVKELISNV 58 (108)
Q Consensus 16 ~~it~e~I~~vl~aaG~~v~~~~~~~f~~alk-g----k~i~~li~~~ 58 (108)
+.|+.+++..+++..|.++...-...+++.+. + .++.+++.-+
T Consensus 39 G~i~~~el~~~l~~~g~~~~~~e~~~l~~~~d~~~~g~i~~~eF~~~~ 86 (105)
T 1wlz_A 39 NTISREEFRAICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRF 86 (105)
T ss_dssp SCBCHHHHHHHHHHHTCCCCHHHHHHHHTTSCBCTTSCBCHHHHHHHH
T ss_pred CcCcHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCCCCCCcHHHHHHHH
Confidence 48999999999999999877776776666663 1 3677777644
Done!