RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10269
         (108 letters)



>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
          gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 237

 Score = 26.4 bits (57), Expect = 0.68
 Identities = 13/17 (76%), Positives = 13/17 (76%)

Query: 68 AAAPAAAQAAAPAAAEA 84
          AAA AAA AAA AAA A
Sbjct: 1  AAAAAAAAAAAAAAAAA 17



 Score = 26.0 bits (56), Expect = 1.0
 Identities = 13/32 (40%), Positives = 14/32 (43%)

Query: 69  AAPAAAQAAAPAAAEAKEDKKKKEESDEGSDD 100
           AA AAA AAA AAA A          D    +
Sbjct: 1   AAAAAAAAAAAAAAAAAAASLCLFPEDFLLKE 32



 Score = 25.6 bits (55), Expect = 1.1
 Identities = 14/18 (77%), Positives = 14/18 (77%)

Query: 67 AAAAPAAAQAAAPAAAEA 84
          AAAA AAA AAA AAA A
Sbjct: 1  AAAAAAAAAAAAAAAAAA 18



 Score = 25.2 bits (54), Expect = 2.0
 Identities = 14/19 (73%), Positives = 14/19 (73%)

Query: 64 AGPAAAAPAAAQAAAPAAA 82
          A  AAAA AAA AAA AAA
Sbjct: 1  AAAAAAAAAAAAAAAAAAA 19



 Score = 24.9 bits (53), Expect = 2.3
 Identities = 13/19 (68%), Positives = 14/19 (73%)

Query: 66 PAAAAPAAAQAAAPAAAEA 84
           AAAA AAA AAA AAA +
Sbjct: 2  AAAAAAAAAAAAAAAAAAS 20


>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c)
           {Campylobacter jejuni [TaxId: 197]}
          Length = 374

 Score = 25.8 bits (55), Expect = 1.1
 Identities = 7/32 (21%), Positives = 10/32 (31%)

Query: 10  HMSYIVGSEDGEKIQTVLKAAGVEVEPYWPGL 41
               I       K+   LK   +E  P W  +
Sbjct: 293 SQKNITLHPKISKLIEDLKNKQIETRPLWKAM 324


>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium
           [TaxId: 90371]}
          Length = 376

 Score = 25.3 bits (54), Expect = 1.8
 Identities = 3/33 (9%), Positives = 9/33 (27%)

Query: 10  HMSYIVGSEDGEKIQTVLKAAGVEVEPYWPGLF 42
            +         + +   LK  G+    ++    
Sbjct: 294 RVDEARCGITRDALMASLKTKGIGTGLHFRAAH 326


>d1u4na_ c.69.1.2 (A:) Carboxylesterase {Alicyclobacillus
           acidocaldarius [TaxId: 405212]}
          Length = 308

 Score = 25.2 bits (53), Expect = 1.9
 Identities = 11/43 (25%), Positives = 15/43 (34%), Gaps = 1/43 (2%)

Query: 1   MGPKCALFLHMSYIVGSEDGEKIQTVLKAAGVEVEPY-WPGLF 42
            G   A      Y    + G+     L  AGV+VE   +  L 
Sbjct: 237 SGLPPAYIATAQYDPLRDVGKLYAEALNKAGVKVEIENFEDLI 279


>d1bdga2 c.55.1.3 (A:223-460) Hexokinase {Blood fluke (Schistosoma
           mansoni) [TaxId: 6183]}
          Length = 237

 Score = 24.4 bits (53), Expect = 2.8
 Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 5/40 (12%)

Query: 36  PYWPGLFAKAL-----EGVNVKELISNVGSGAGAGPAAAA 70
           P +       +     +       +S  GSG GA   AA+
Sbjct: 197 PKFCERMTDMVDKLKPKNTRFCLRLSEDGSGKGAAAIAAS 236


>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
          {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 130

 Score = 24.0 bits (52), Expect = 4.4
 Identities = 10/26 (38%), Positives = 10/26 (38%)

Query: 59 GSGAGAGPAAAAPAAAQAAAPAAAEA 84
          G  A A P  A   A   AA  A  A
Sbjct: 13 GDSAAASPGGAQAPATTGAAGTAPTA 38



 Score = 23.2 bits (50), Expect = 7.2
 Identities = 8/26 (30%), Positives = 9/26 (34%)

Query: 59 GSGAGAGPAAAAPAAAQAAAPAAAEA 84
          G         AA  A  A  P AA +
Sbjct: 21 GGAQAPATTGAAGTAPTAPQPTAAPS 46


>d1lzla_ c.69.1.2 (A:) Heroin esterase {Rhodococcus sp. [TaxId:
           1831]}
          Length = 317

 Score = 23.6 bits (49), Expect = 7.0
 Identities = 12/43 (27%), Positives = 17/43 (39%), Gaps = 1/43 (2%)

Query: 1   MGPKCALFLHMSYIVGSEDGEKIQTVLKAAGVEVEPY-WPGLF 42
            G        M      ++G +    L  AGV VE + +PG F
Sbjct: 246 TGLPPTYLSTMELDPLRDEGIEYALRLLQAGVSVELHSFPGTF 288


>d1ig8a2 c.55.1.3 (A:225-486) Hexokinase {Baker's yeast
           (Saccharomyces cerevisiae), pII [TaxId: 4932]}
          Length = 262

 Score = 23.3 bits (50), Expect = 7.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 40  GLFAKALEGVNVKELISNVGSGAGAGPAAA 69
           G    +L+   +K + +  GSGAGA   AA
Sbjct: 216 GWTQTSLDDYPIKIVPAEDGSGAGAAVIAA 245


>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens,
           Novo/BPN' [TaxId: 1390]}
          Length = 281

 Score = 23.3 bits (49), Expect = 8.0
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 48  GVNVKELISNVGSGAGAGPAAAAPAAAQAAAPAAAE-----AKEDKKKKEES--DEGSDD 100
           GV+++  +     GA  G + A+P  A AAA   ++       + +   E +    G   
Sbjct: 202 GVSIQSTLPGNKYGAYNGTSMASPHVAGAAALILSKHPNWTNTQVRSSLENTTTKLGDSF 261

Query: 101 DMGFGLFD 108
             G GL +
Sbjct: 262 YYGKGLIN 269


>d2j7qa1 d.3.1.20 (A:1-232) Tegument protein M48; N-terminal
          domain {Murine cytomegalovirus (MCMV) [TaxId: 10366]}
          Length = 232

 Score = 23.3 bits (50), Expect = 8.2
 Identities = 6/15 (40%), Positives = 9/15 (60%)

Query: 5  CALFLHMSYIVGSED 19
          C  FLH  Y++G + 
Sbjct: 27 CFTFLHTCYLMGIDP 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.309    0.129    0.368 

Gapped
Lambda     K      H
   0.267   0.0474    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 373,197
Number of extensions: 14977
Number of successful extensions: 111
Number of sequences better than 10.0: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 36
Length of query: 108
Length of database: 2,407,596
Length adjustment: 68
Effective length of query: 40
Effective length of database: 1,473,956
Effective search space: 58958240
Effective search space used: 58958240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 47 (22.5 bits)