BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10276
(172 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3JW8|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase
pdb|3JW8|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase
Length = 320
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 71 EILTRDRFE-DLYNREPLYCKIRAHLCHPFWMASKRVRVEGELEILT 116
+L+R++ E D+YN +PL C+ +C + + RVE L LT
Sbjct: 199 SVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLT 245
>pdb|3PE6|A Chain A, Crystal Structure Of A Soluble Form Of Human Mgll In
Complex With An Inhibitor
Length = 303
Score = 31.6 bits (70), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 71 EILTRDRFE-DLYNREPLYCKIRAHLCHPFWMASKRVRVEGELEILT 116
+L+R++ E D+YN +PL C+ +C + + RVE L LT
Sbjct: 182 SVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLT 228
>pdb|3JWE|A Chain A, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
pdb|3JWE|B Chain B, Crystal Structure Of Human Mono-Glyceride Lipase In
Complex With Sar629
Length = 320
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 71 EILTRDRFE-DLYNREPLYCKIRAHLCHPFWMASKRVRVEGELEILT 116
+L+R++ E D+YN +PL C+ +C + + RVE L LT
Sbjct: 199 SVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLT 245
>pdb|3HJU|A Chain A, Crystal Structure Of Human Monoglyceride Lipase
pdb|3HJU|B Chain B, Crystal Structure Of Human Monoglyceride Lipase
Length = 342
Score = 31.6 bits (70), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 71 EILTRDRFE-DLYNREPLYCKIRAHLCHPFWMASKRVRVEGELEILT 116
+L+R++ E D+YN +PL C+ +C + + RVE L LT
Sbjct: 200 SVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLT 246
>pdb|3HY8|A Chain A, Crystal Structure Of Human Pyridoxine 5'-Phosphate Oxidase
R229w Mutant
Length = 261
Score = 31.2 bits (69), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 8 YASVLFFF----KNVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRLFRFLFLH 63
+AS++F++ + VRVEG ++ L + E ++ P +I A + H SS + +L
Sbjct: 126 FASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLR 185
Query: 64 VRVEGELEILTRDR 77
+ E ELE L +D+
Sbjct: 186 KKNE-ELEQLYQDQ 198
>pdb|1NRG|A Chain A, Structure And Properties Of Recombinant Human
Pyridoxine-5'-Phosphate Oxidase
Length = 261
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 8 YASVLFFF----KNVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRLFRFLFLH 63
+AS++F++ + VRVEG ++ L + E ++ P +I A + H SS + +L
Sbjct: 126 FASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLR 185
Query: 64 VRVEGELEILTRDR 77
+ E ELE L +D+
Sbjct: 186 KKNE-ELEQLYQDQ 198
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 136 HLCHQDQATDWDEAKATHDAIYDKCKR----GVDLPMP 169
H+ H D + WD KAT IY++C+ G D+ P
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQP 38
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 10/17 (58%), Positives = 14/17 (82%)
Query: 153 HDAIYDKCKRGVDLPMP 169
++AIYD CKR +D+P P
Sbjct: 207 NEAIYDMCKRNLDIPRP 223
>pdb|3CT9|A Chain A, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
pdb|3CT9|B Chain B, Crystal Structure Of A Putative Zinc Peptidase
(Np_812461.1) From Bacteroides Thetaiotaomicron Vpi-5482
At 2.31 A Resolution
Length = 356
Score = 26.2 bits (56), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 31 RFEDLYNREPLYCKIRAHL-CHPSSRLFRF 59
R +LY+ E L+ +IR H+ C +R FR
Sbjct: 250 RSNELYSNEDLFAEIRKHIACDAKARSFRL 279
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.330 0.144 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,232,477
Number of Sequences: 62578
Number of extensions: 207226
Number of successful extensions: 475
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 23
length of query: 172
length of database: 14,973,337
effective HSP length: 92
effective length of query: 80
effective length of database: 9,216,161
effective search space: 737292880
effective search space used: 737292880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 48 (23.1 bits)