BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10276
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B1J1C4|PDXH_PSEPW Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas putida
(strain W619) GN=pdxH PE=3 SV=1
Length = 215
Score = 33.5 bits (75), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 5/54 (9%)
Query: 8 YASVLFFF----KNVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRLF 57
YA++ FF+ + VR+EG +E +T +D Y PL ++ A P SR+
Sbjct: 95 YAAMTFFWPALERQVRIEGRVEKVTPQESDDYYQVRPLGSRLGA-WASPQSRVI 147
Score = 30.0 bits (66), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 99 FWMASKR-VRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQ 140
FW A +R VR+EG +E +T +D Y PL ++ A Q
Sbjct: 101 FWPALERQVRIEGRVEKVTPQESDDYYQVRPLGSRLGAWASPQ 143
>sp|Q6F718|PDXH_ACIAD Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acinetobacter sp.
(strain ADP1) GN=pdxH PE=3 SV=1
Length = 218
Score = 33.1 bits (74), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 42/87 (48%), Gaps = 13/87 (14%)
Query: 8 YASVLFFF----KNVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRLF------ 57
YA +LF++ + VR+ G + ++ D Y++ P +I AH+ P S +
Sbjct: 96 YAELLFYWPSLERQVRIGGIVNKISEHESTDYYHKRPRDSQIAAHISTPQSGIIANREEL 155
Query: 58 --RFLFLHVRVEGELEILTRDRFEDLY 82
RF L+ +V G+ +L++ F Y
Sbjct: 156 QQRFNRLYEQV-GQQTVLSKPEFWGGY 181
>sp|A9I847|PDXH_BORPD Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella petrii
(strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=pdxH
PE=3 SV=1
Length = 210
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 87 LYCKIRAHLCHPFWMASKR-VRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQDQATD 145
L RA L FW +R VR+EG +E ++ + + ++ PL +I A Q Q
Sbjct: 86 LLANPRAALLF-FWQPLERQVRIEGRVEQVSAEESDAYFHSRPLGSRIGAWASRQSQPVT 144
Query: 146 WDEAKATHDAIYDKCKRGVDLPMPGH 171
E +A I + + G P P H
Sbjct: 145 RAELEAREQEI--RARYGEQPPRPPH 168
>sp|O35678|MGLL_MOUSE Monoglyceride lipase OS=Mus musculus GN=Mgll PE=1 SV=1
Length = 303
Score = 32.0 bits (71), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 38/67 (56%), Gaps = 4/67 (5%)
Query: 53 SSRLFRFLFLHVRVEGELE--ILTRDRFE-DLYNREPLYCKIRAHLCHPFWMASKRVRVE 109
+++L F+ ++ + G ++ +L+R++ E DLYN +PL C+ +C + + RVE
Sbjct: 163 AAKLLNFVLPNMTL-GRIDSSVLSRNKSEVDLYNSDPLVCRAGLKVCFGIQLLNAVARVE 221
Query: 110 GELEILT 116
+ LT
Sbjct: 222 RAMPRLT 228
>sp|Q8R431|MGLL_RAT Monoglyceride lipase OS=Rattus norvegicus GN=Mgll PE=1 SV=1
Length = 303
Score = 32.0 bits (71), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 53 SSRLFRFLFLHVRVEGELE--ILTRDRFE-DLYNREPLYCKIRAHLCHPFWMASKRVRVE 109
+++L F+ ++ + G ++ +L+R++ E DLYN +PL C +C + + RVE
Sbjct: 163 AAKLLNFVLPNISL-GRIDSSVLSRNKSEVDLYNSDPLICHAGVKVCFGIQLLNAVSRVE 221
Query: 110 GELEILT 116
+ LT
Sbjct: 222 RAMPRLT 228
>sp|Q7UKQ9|PDXH_RHOBA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Rhodopirellula
baltica (strain SH1) GN=pdxH PE=3 SV=1
Length = 223
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 87 LYCKIRAHLCHPFWMASKR-VRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQDQATD 145
+ R LC FW +R VR++G ++ ++++ E ++ P ++ AH+ Q D
Sbjct: 94 MRANPRVSLCL-FWPHCQRQVRIQGTVDKVSREMSETYFHSRPRDSQLGAHVSQQSSVID 152
Query: 146 WDEAKATHDA-IYDKCKRGVDLPMP 169
EA + A + + G +P+P
Sbjct: 153 SREAMESSLAQLKARYPEGTQIPLP 177
>sp|Q99685|MGLL_HUMAN Monoglyceride lipase OS=Homo sapiens GN=MGLL PE=1 SV=2
Length = 303
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 71 EILTRDRFE-DLYNREPLYCKIRAHLCHPFWMASKRVRVEGELEILT 116
+L+R++ E D+YN +PL C+ +C + + RVE L LT
Sbjct: 182 SVLSRNKTEVDIYNSDPLICRAGLKVCFGIQLLNAVSRVERALPKLT 228
>sp|Q03025|APRE_PSEAE Alkaline protease secretion protein AprE OS=Pseudomonas aeruginosa
(strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228)
GN=aprE PE=3 SV=2
Length = 432
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 10/72 (13%)
Query: 66 VEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWMASKRVRVEGELEILTQDRFEDLYN 125
VEG+L + DR ++ + + + SK RV GE+ +++ DR D N
Sbjct: 322 VEGQLAVNLVDR---------IHSGLPVEMLFTAFNQSKTPRVTGEVTMVSADRLLDEQN 372
Query: 126 REPLYCKIRAHL 137
++P Y +RA +
Sbjct: 373 KQPYYA-LRAQV 383
>sp|A4XS85|PDXH_PSEMY Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Pseudomonas
mendocina (strain ymp) GN=pdxH PE=3 SV=1
Length = 215
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 20/97 (20%)
Query: 8 YASVLFFF----KNVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRLFRFLFLH 63
YA++ FF+ + VR+EG +E +T + + PL +I A P SR+
Sbjct: 95 YAAMTFFWPSLERQVRIEGRVERVTPAESDGYFQVRPLGSRIGA-WASPQSRV------- 146
Query: 64 VRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFW 100
+R ELE L + + N+ P C P W
Sbjct: 147 IRDRAELENLLAETEKRFLNQAP--------HCPPHW 175
>sp|B0V9C9|PDXH_ACIBY Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acinetobacter
baumannii (strain AYE) GN=pdxH PE=3 SV=1
Length = 218
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 8 YASVLFFF----KNVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSS 54
YA +LF++ + VRV G + + D Y++ P +I AH+ P S
Sbjct: 96 YAELLFYWPSLERQVRVGGHVVKIPEQESTDYYHKRPRDSQIAAHISTPQS 146
>sp|A3M9W4|PDXH_ACIBT Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acinetobacter
baumannii (strain ATCC 17978 / NCDC KC 755) GN=pdxH PE=3
SV=2
Length = 218
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 8 YASVLFFF----KNVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSS 54
YA +LF++ + VRV G + + D Y++ P +I AH+ P S
Sbjct: 96 YAELLFYWPSLERQVRVGGHVVKIPEQESTDYYHKRPRDSQIAAHISTPQS 146
>sp|B2I1H7|PDXH_ACIBC Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acinetobacter
baumannii (strain ACICU) GN=pdxH PE=3 SV=1
Length = 218
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 8 YASVLFFF----KNVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSS 54
YA +LF++ + VRV G + + D Y++ P +I AH+ P S
Sbjct: 96 YAELLFYWPSLERQVRVGGHVVKIPEQESTDYYHKRPRDSQIAAHISTPQS 146
>sp|B7ICC6|PDXH_ACIB5 Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Acinetobacter
baumannii (strain AB0057) GN=pdxH PE=3 SV=1
Length = 218
Score = 31.2 bits (69), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Query: 8 YASVLFFF----KNVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSS 54
YA +LF++ + VRV G + + D Y++ P +I AH+ P S
Sbjct: 96 YAELLFYWPSLERQVRVGGHVVKIPEQESTDYYHKRPRDSQIAAHISTPQS 146
>sp|Q9NVS9|PNPO_HUMAN Pyridoxine-5'-phosphate oxidase OS=Homo sapiens GN=PNPO PE=1 SV=1
Length = 261
Score = 30.8 bits (68), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 8 YASVLFFF----KNVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRLFRFLFLH 63
+AS++F++ + VRVEG ++ L + E ++ P +I A + H SS + +L
Sbjct: 126 FASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLR 185
Query: 64 VRVEGELEILTRDR 77
+ E ELE L +D+
Sbjct: 186 KKNE-ELEQLYQDQ 198
>sp|Q7VU72|PDXH_BORPE Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella
pertussis (strain Tohama I / ATCC BAA-589 / NCTC 13251)
GN=pdxH PE=3 SV=1
Length = 210
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 87 LYCKIRAHLCHPFWMASKR-VRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQDQATD 145
L RA L FW +R VR+EG +E ++ ++ ++ PL ++ A Q Q
Sbjct: 86 LDANPRASLLF-FWQPLERQVRIEGVIEKVSAAESDEYFHSRPLGSRLGAWASRQSQPIT 144
Query: 146 WDEAKATHDAIYDKCKRGVDLPMPGH 171
DE +A D+ G P P H
Sbjct: 145 RDELEAREREFRDRY--GEHPPRPPH 168
>sp|Q7W4Q1|PDXH_BORPA Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella
parapertussis (strain 12822 / ATCC BAA-587 / NCTC 13253)
GN=pdxH PE=3 SV=1
Length = 210
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 87 LYCKIRAHLCHPFWMASKR-VRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQDQATD 145
L RA L FW +R VR+EG +E ++ ++ ++ PL ++ A Q Q
Sbjct: 86 LDANPRASLLF-FWQPLERQVRIEGVIEKVSAAESDEYFHSRPLGSRLGAWASRQSQPIT 144
Query: 146 WDEAKATHDAIYDKCKRGVDLPMPGH 171
DE +A D+ G P P H
Sbjct: 145 RDELEAREREFRDRY--GEHPPRPPH 168
>sp|Q7WG77|PDXH_BORBR Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Bordetella
bronchiseptica (strain ATCC BAA-588 / NCTC 13252 / RB50)
GN=pdxH PE=3 SV=1
Length = 210
Score = 30.8 bits (68), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 38/86 (44%), Gaps = 4/86 (4%)
Query: 87 LYCKIRAHLCHPFWMASKR-VRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQDQATD 145
L RA L FW +R VR+EG +E ++ ++ ++ PL ++ A Q Q
Sbjct: 86 LDANPRASLLF-FWQPLERQVRIEGVIEKVSAAESDEYFHSRPLGSRLGAWASRQSQPIT 144
Query: 146 WDEAKATHDAIYDKCKRGVDLPMPGH 171
DE +A D+ G P P H
Sbjct: 145 RDELEAREREFRDRY--GEHPPRPPH 168
>sp|Q474I9|PDXH_CUPPJ Pyridoxine/pyridoxamine 5'-phosphate oxidase OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=pdxH PE=3
SV=1
Length = 212
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
Query: 87 LYCKIRAHLCHPFWMASKRVRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQDQATDW 146
+ RA L + ++VRVEG +E + D + Y PL ++ A Q +
Sbjct: 87 MAANPRAALLFHWVQLERQVRVEGRVEKVADDESDAYYASRPLGSRLGAWASEQSREVPG 146
Query: 147 DEAKATHDAIYDKCKRGVDLPMPGH 171
+ ++ Y + K G + P P H
Sbjct: 147 RDVLEQRESEY-RAKFGENPPRPAH 170
>sp|Q8MSG8|APTX_DROME Aprataxin-like protein OS=Drosophila melanogaster GN=CG5316 PE=2
SV=2
Length = 662
Score = 30.8 bits (68), Expect = 4.7, Method: Composition-based stats.
Identities = 14/62 (22%), Positives = 30/62 (48%)
Query: 70 LEILTRDRFEDLYNREPLYCKIRAHLCHPFWMASKRVRVEGELEILTQDRFEDLYNREPL 129
L +++ D + R + L PF +A + V+G +E ++++ + +L + PL
Sbjct: 322 LHVISNDFYSMAMKRISHWNSFNTELFMPFQIAYMMLSVQGSIESISEETYNNLQEKTPL 381
Query: 130 YC 131
C
Sbjct: 382 RC 383
>sp|P45106|PRMB_HAEIN 50S ribosomal protein L3 glutamine methyltransferase OS=Haemophilus
influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd)
GN=prmB PE=3 SV=1
Length = 314
Score = 30.0 bits (66), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 68 GELEILTRDRFEDLYNREPL-YCKIRAHLC-HPFWMASKRVRVEGELEILTQDRFEDLYN 125
E E L + + R P+ Y A C H F++ + + + L QDRFEDL +
Sbjct: 80 SEKETLVQLVLTRIEQRVPVAYLTNSAWFCGHEFYVDERTIIPRSPISALIQDRFEDLIS 139
Query: 126 REP 128
+EP
Sbjct: 140 QEP 142
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.144 0.467
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,923,775
Number of Sequences: 539616
Number of extensions: 2688192
Number of successful extensions: 5982
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 5940
Number of HSP's gapped (non-prelim): 62
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 57 (26.6 bits)