Query psy10276
Match_columns 172
No_of_seqs 156 out of 579
Neff 4.0
Searched_HMMs 46136
Date Fri Aug 16 22:19:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10276.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10276hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0259 PdxH Pyridoxamine-phos 100.0 1.8E-50 4E-55 338.1 11.1 128 38-172 44-174 (214)
2 KOG2586|consensus 100.0 1.7E-43 3.8E-48 296.8 10.4 119 47-172 65-186 (228)
3 PLN02918 pyridoxine (pyridoxam 100.0 1.3E-39 2.9E-44 302.4 12.8 136 30-172 354-500 (544)
4 PLN03049 pyridoxine (pyridoxam 100.0 1.4E-37 3E-42 283.3 11.8 128 38-172 287-418 (462)
5 PRK05679 pyridoxamine 5'-phosp 100.0 3.7E-28 7.9E-33 198.5 12.1 127 38-172 25-155 (195)
6 TIGR00558 pdxH pyridoxamine-ph 100.0 3.4E-28 7.3E-33 202.8 11.5 126 39-172 48-177 (217)
7 KOG2586|consensus 99.6 1.6E-16 3.4E-21 134.3 -0.1 49 8-56 105-157 (228)
8 COG0259 PdxH Pyridoxamine-phos 99.6 2E-16 4.2E-21 133.4 -0.2 78 8-102 94-176 (214)
9 PLN02918 pyridoxine (pyridoxam 99.2 5E-12 1.1E-16 118.7 0.7 49 8-56 419-471 (544)
10 PF01243 Pyridox_oxidase: Pyri 99.0 2E-09 4.2E-14 74.5 6.3 83 30-119 3-89 (89)
11 PLN03049 pyridoxine (pyridoxam 98.9 2.2E-10 4.8E-15 105.4 -0.7 49 8-56 337-389 (462)
12 PF12766 Pyridox_oxase_2: Pyri 98.6 5.1E-08 1.1E-12 73.5 4.3 57 57-116 37-100 (100)
13 TIGR03618 Rv1155_F420 PPOX cla 98.5 2.4E-07 5.3E-12 67.6 4.9 65 48-119 7-74 (117)
14 TIGR03667 Rv3369 PPOX class pr 98.2 4.5E-06 9.7E-11 64.0 7.4 77 41-125 15-99 (130)
15 PRK05679 pyridoxamine 5'-phosp 98.2 1E-06 2.2E-11 72.4 2.4 49 8-56 75-127 (195)
16 TIGR00558 pdxH pyridoxamine-ph 97.9 8.7E-06 1.9E-10 68.3 2.6 49 8-56 97-149 (217)
17 COG3871 Uncharacterized stress 97.5 0.00017 3.7E-09 58.5 5.2 79 41-124 15-99 (145)
18 TIGR03666 Rv2061_F420 PPOX cla 96.6 0.0065 1.4E-07 47.2 6.1 70 47-123 21-91 (132)
19 PRK03467 hypothetical protein; 95.7 0.032 6.9E-07 45.1 6.0 63 65-130 39-111 (144)
20 COG5135 Uncharacterized conser 95.1 0.015 3.2E-07 50.3 2.5 85 49-138 35-132 (245)
21 TIGR03668 Rv0121_F420 PPOX cla 94.6 0.11 2.4E-06 41.0 6.0 78 34-119 7-103 (141)
22 PRK06733 hypothetical protein; 90.3 0.95 2.1E-05 36.9 6.2 79 33-118 14-94 (151)
23 COG5015 Uncharacterized conser 86.0 2.8 6E-05 33.8 6.1 73 49-128 21-94 (132)
24 TIGR00026 hi_GC_TIGR00026 deaz 79.0 12 0.00026 28.7 7.1 69 45-126 15-88 (113)
25 PF13883 Pyrid_oxidase_2: Pyri 78.2 3.3 7.1E-05 33.4 4.0 62 67-131 51-130 (170)
26 KOG4558|consensus 74.9 3.7 8.1E-05 35.8 3.6 76 44-122 32-124 (251)
27 PF12900 Pyridox_ox_2: Pyridox 74.1 9 0.0002 29.2 5.2 90 29-124 2-103 (143)
28 COG3467 Predicted flavin-nucle 64.5 12 0.00025 30.4 4.2 74 39-119 22-108 (166)
29 COG2156 KdpC K+-transporting A 40.3 23 0.0005 30.2 2.3 43 119-161 62-108 (190)
30 COG3787 Uncharacterized protei 29.3 70 0.0015 26.3 3.3 61 65-128 34-104 (145)
31 PF07244 Surf_Ag_VNR: Surface 29.1 88 0.0019 20.6 3.4 47 104-162 4-50 (78)
32 PF02669 KdpC: K+-transporting 26.4 39 0.00084 28.6 1.5 31 102-132 39-73 (188)
33 PRK00295 hypothetical protein; 25.4 84 0.0018 22.1 2.8 8 165-172 61-68 (68)
34 PF03002 Somatostatin: Somatos 23.5 29 0.00063 19.3 0.1 7 11-17 8-14 (18)
35 PRK00736 hypothetical protein; 22.8 94 0.002 21.8 2.7 8 165-172 61-68 (68)
36 PF05798 Phage_FRD3: Bacteriop 21.4 45 0.00097 24.5 0.8 25 12-36 33-58 (75)
37 PRK13995 potassium-transportin 20.6 84 0.0018 27.0 2.4 12 120-131 61-72 (203)
No 1
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=100.00 E-value=1.8e-50 Score=338.14 Aligned_cols=128 Identities=22% Similarity=0.260 Sum_probs=116.9
Q ss_pred cccCccccccc--cCCCCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCCCCCceEEEEEeeEEc
Q psy10276 38 REPLYCKIRAH--LCHPSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWMASKRVRVEGELEIL 115 (172)
Q Consensus 38 ~~~~~~ki~a~--~g~PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~l~RQVRIeG~vekl 115 (172)
++|..--+.+. +|+|++| |||||++|++||+|||||+|+||+||++|| +|||||+|-.|+|||||+|.||+|
T Consensus 44 ~ePnAm~lATvd~~G~P~~R---~VLLK~~DerGfvFyTN~~S~Kg~eLa~np---~Aal~F~W~~L~RQVrv~G~ve~v 117 (214)
T COG0259 44 NEPNAMTLATVDEQGRPSSR---IVLLKELDERGFVFYTNYGSRKGRELAANP---YAALLFPWKELERQVRVEGRVERV 117 (214)
T ss_pred CCCceeEEEeecCCCCceee---EEEecccCCCcEEEEeccCCcchhhHhhCc---ceeEEecchhccceEEEeeeeeeC
Confidence 46666555544 5778887 799999999999999999999999999999 999994444599999999999999
Q ss_pred CHHHHHHHHhhCCCCCcceeeecCCCCcc-CHHHHHHHHHHHHhHhcCCCCCCCCCCC
Q psy10276 116 TQDRFEDLYNREPLYCKIRAHLCHQDQAT-DWDEAKATHDAIYDKCKRGVDLPMPGHL 172 (172)
Q Consensus 116 ~~eesd~YF~sRPr~SQIgAwaS~QS~~i-~R~~Le~r~~~~~~kf~~~~~VPrP~~~ 172 (172)
+++|||+||+|||++||||||||+||.+| ||.+|+++++++.++|+++ +||+|+||
T Consensus 118 s~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae~~~kf~~~-~iP~P~~W 174 (214)
T COG0259 118 SDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAELTAKFADG-EIPRPPHW 174 (214)
T ss_pred CHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHHHHHhcCCC-CCCCCCCc
Confidence 99999999999999999999999999999 9999999999999999976 59999998
No 2
>KOG2586|consensus
Probab=100.00 E-value=1.7e-43 Score=296.77 Aligned_cols=119 Identities=20% Similarity=0.249 Sum_probs=113.4
Q ss_pred cccCCCCceeeEEEEeeeecCCceEEEecC-CCchhhccccccccccceeeccCCC-CCceEEEEEeeEEcCHHHHHHHH
Q psy10276 47 AHLCHPSSRLFRFLFLHVRVEGELEILTRD-RFEDLYNREPLYCKIRAHLCHPFWM-ASKRVRVEGELEILTQDRFEDLY 124 (172)
Q Consensus 47 a~~g~PSsRi~R~VLLK~~de~Gf~F~Tn~-~S~Kg~eL~~nP~~~~AAL~F~~w~-l~RQVRIeG~vekl~~eesd~YF 124 (172)
..++.||+| |||||++|.+||+||||| .|+||+||++|| +|||+ |||+ |.|||||||.||+|+++|+++||
T Consensus 65 ~~d~rvssR---mvLlKgl~~~gf~fytn~~~srk~kdL~~NP---~Aal~-Fyw~~l~rQVRveG~ve~l~~ee~e~yf 137 (228)
T KOG2586|consen 65 DKDGRVSSR---MVLLKGLDHDGFVFYTNYGTSRKGKDLQENP---NAALL-FYWEDLNRQVRVEGIVEKLPREEAEAYF 137 (228)
T ss_pred cccCCccee---eeeeecccCCCeEEEeeccccccccccccCC---cceEE-EeehhccceeEEEeccccCCHHHHHHHH
Confidence 347788887 799999999999999999 999999999999 99999 7776 99999999999999999999999
Q ss_pred hhCCCCCcceeeecCCCCcc-CHHHHHHHHHHHHhHhcCCCCCCCCCCC
Q psy10276 125 NREPLYCKIRAHLCHQDQAT-DWDEAKATHDAIYDKCKRGVDLPMPGHL 172 (172)
Q Consensus 125 ~sRPr~SQIgAwaS~QS~~i-~R~~Le~r~~~~~~kf~~~~~VPrP~~~ 172 (172)
++||++||||||+|+||.+| +|++|+++.+++.++|.+++.||+|++|
T Consensus 138 ~srp~~SqIga~~s~qs~vI~~re~l~k~~e~l~~~~~~~~~IpkP~sw 186 (228)
T KOG2586|consen 138 KSRPRASQIGAWASPQSEVIPDREELEKKDEELTELFGDEQSIPKPDSW 186 (228)
T ss_pred hcCcchhhccceecCCCCccCCHHHHHHHHHHHHHHhcccccccCCCcc
Confidence 99999999999999999999 9999999999999999987789999987
No 3
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=100.00 E-value=1.3e-39 Score=302.44 Aligned_cols=136 Identities=21% Similarity=0.290 Sum_probs=122.0
Q ss_pred hhHhhhhh-------cccCcccccc--ccCCCCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCC
Q psy10276 30 DRFEDLYN-------REPLYCKIRA--HLCHPSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFW 100 (172)
Q Consensus 30 ~~~~~~~~-------~~~~~~ki~a--~~g~PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w 100 (172)
+.+.+.|+ .+|..--+++ .+|.|++| |||||++|++||+||||+.|+|++||++|| +|||+ |||
T Consensus 354 ~~F~~W~~eA~~~~~~eP~Am~LATv~~~G~P~~R---tVlLk~~d~~g~~F~Tn~~S~K~~el~~Np---~aal~-F~w 426 (544)
T PLN02918 354 DQFRKWFDEAVAAGLREPNAMALSTANKDGKPSSR---MVLLKGVDKNGFVWYTNYESQKGSDLSENP---SAALL-FYW 426 (544)
T ss_pred HHHHHHHHHHHhcCCCCCccceEEeeCCCCCeeeE---EEEEeEEcCCceEEEECCCChhHHHHHhCC---cEEEE-eee
Confidence 34556665 3666666666 46888887 799999999999999999999999999999 99999 667
Q ss_pred C-CCceEEEEEeeEEcCHHHHHHHHhhCCCCCcceeeecCCCCcc-CHHHHHHHHHHHHhHhcCCCCCCCCCCC
Q psy10276 101 M-ASKRVRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQDQAT-DWDEAKATHDAIYDKCKRGVDLPMPGHL 172 (172)
Q Consensus 101 ~-l~RQVRIeG~vekl~~eesd~YF~sRPr~SQIgAwaS~QS~~i-~R~~Le~r~~~~~~kf~~~~~VPrP~~~ 172 (172)
+ +.|||||+|.|++++++|||+||++||++||||||||+||++| ||++|++++++++++|.++.+||+|+||
T Consensus 427 ~~l~rQVRi~G~v~~~~~~es~~yf~sRp~~Sqi~A~aS~QS~~i~~r~~L~~~~~~~~~~~~~~~~vp~P~~W 500 (544)
T PLN02918 427 EELNRQVRVEGSVQKVPESESENYFHSRPRGSQIGAIVSKQSSVVPGRHVLYQEYKELEKKYSDGSVIPKPKNW 500 (544)
T ss_pred ccccEEEEEEEEEEECCHHHHHHHHHhCCccccceEEecCCCCcCCCHHHHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 6 9999999999999999999999999999999999999999998 9999999999999999754339999998
No 4
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=100.00 E-value=1.4e-37 Score=283.31 Aligned_cols=128 Identities=20% Similarity=0.267 Sum_probs=118.8
Q ss_pred cccCccccccc--cCCCCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCCC-CCceEEEEEeeEE
Q psy10276 38 REPLYCKIRAH--LCHPSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWM-ASKRVRVEGELEI 114 (172)
Q Consensus 38 ~~~~~~ki~a~--~g~PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~-l~RQVRIeG~vek 114 (172)
.+|+..-+++. +|.|++| +||||++|++||+|||||+|+|++||++|| +|||| |||+ +.|||||+|.|++
T Consensus 287 ~ep~am~LATvd~~G~P~~R---~VlLk~~d~~g~~F~Tn~~S~K~~eL~~Np---~aal~-F~w~~~~rQvRv~G~a~~ 359 (462)
T PLN03049 287 REPNAMTLATAGEDGRPSAR---IVLLKGVDKRGFVWYTNYDSRKAHELSANP---KASLV-FYWDGLHRQVRVEGSVEK 359 (462)
T ss_pred CCCCeeEEEEECCCCCeeEE---EEEEeEEcCCcEEEEECCCCHHHHHHhhCC---cEEEE-eecCCCCEEEEEEEEEEE
Confidence 47887777774 5888887 799999999999999999999999999999 99999 6676 9999999999999
Q ss_pred cCHHHHHHHHhhCCCCCcceeeecCCCCcc-CHHHHHHHHHHHHhHhcCCCCCCCCCCC
Q psy10276 115 LTQDRFEDLYNREPLYCKIRAHLCHQDQAT-DWDEAKATHDAIYDKCKRGVDLPMPGHL 172 (172)
Q Consensus 115 l~~eesd~YF~sRPr~SQIgAwaS~QS~~i-~R~~Le~r~~~~~~kf~~~~~VPrP~~~ 172 (172)
+++++||+||++||++||||||||+||+++ +|++|++++++++++|.++.++|+|+||
T Consensus 360 ~~~~~s~~yf~~rp~~sq~~a~as~qs~~i~~~~~l~~~~~~~~~~~~~~~~~p~p~~w 418 (462)
T PLN03049 360 VSEEESDQYFHSRPRGSQIGALVSKQSTVIPGRHILDQSYKELEAKYADSSAIPKPKHW 418 (462)
T ss_pred CCHHHHHHHHHhCChhhhhhheeCCCCCcCCCHHHHHHHHHHHHHhhccCCCCCCCCce
Confidence 999999999999999999999999999998 9999999999999999754579999998
No 5
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=99.95 E-value=3.7e-28 Score=198.54 Aligned_cols=127 Identities=20% Similarity=0.241 Sum_probs=114.7
Q ss_pred cccCcccccc--ccCCCCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCCC-CCceEEEEEeeEE
Q psy10276 38 REPLYCKIRA--HLCHPSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWM-ASKRVRVEGELEI 114 (172)
Q Consensus 38 ~~~~~~ki~a--~~g~PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~-l~RQVRIeG~vek 114 (172)
..|+..-+++ .+|.|++| +|+|++++++||.||||..|+|+++|+.|| +|||| |||+ +.|||||+|.|++
T Consensus 25 ~~~~~~~lATv~~dG~P~~R---~V~lr~~~~~~l~f~T~~~S~K~~~l~~np---~val~-~~~~~~~~qvrv~G~a~~ 97 (195)
T PRK05679 25 NDPNAMTLATVDEDGRPSQR---IVLLKGFDERGFVFYTNYESRKGRQLAANP---KAALL-FPWKSLERQVRVEGRVEK 97 (195)
T ss_pred CCCceEEEEeeCCCCCEEEE---EEEEEEECCCeEEEEeCCCCHHHHHHhhCC---cEEEE-EecCCCCEEEEEEEEEEE
Confidence 3556555655 36778887 799999999999999999999999999999 99999 6665 9999999999999
Q ss_pred cCHHHHHHHHhhCCCCCcceeeecCCCCcc-CHHHHHHHHHHHHhHhcCCCCCCCCCCC
Q psy10276 115 LTQDRFEDLYNREPLYCKIRAHLCHQDQAT-DWDEAKATHDAIYDKCKRGVDLPMPGHL 172 (172)
Q Consensus 115 l~~eesd~YF~sRPr~SQIgAwaS~QS~~i-~R~~Le~r~~~~~~kf~~~~~VPrP~~~ 172 (172)
++++++++||.++|+++|+++|+|+||+++ ++++|+++++++.+++.+ .++|+|++|
T Consensus 98 ~~~~~~~~~w~~~p~~~r~~~~~~~qg~~i~~~~~~~~~~~~~~~~~~~-~~~~~p~~f 155 (195)
T PRK05679 98 VSAEESDAYFASRPRGSQIGAWASKQSRPISSRAALEAKFAEVKAKFAQ-GEVPRPPHW 155 (195)
T ss_pred eCHHHHHHHHHhCCHhhhceeeeCCCCCccCCHHHHHHHHHHHHhhccC-CCCCCCCcc
Confidence 999999999999999999999999999998 899999999999999964 468999987
No 6
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=99.95 E-value=3.4e-28 Score=202.77 Aligned_cols=126 Identities=23% Similarity=0.290 Sum_probs=112.8
Q ss_pred ccCccccccc--cCCCCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCCC-CCceEEEEEeeEEc
Q psy10276 39 EPLYCKIRAH--LCHPSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWM-ASKRVRVEGELEIL 115 (172)
Q Consensus 39 ~~~~~ki~a~--~g~PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~-l~RQVRIeG~vekl 115 (172)
+|+-.-+++- +|.|++| ||+||+++++||.||||..|+|+.+|++|| +|+|| |||+ +.+||||+|+|+.+
T Consensus 48 ~~~~~~LaTvd~~G~P~~R---~v~lr~~~~~~l~F~T~~~S~K~~eL~~np---~v~l~-f~~~~~~~qvrv~G~a~~~ 120 (217)
T TIGR00558 48 EPNAMTLSTVDESGRPSSR---MVLLKELDERGFVFYTNYGSRKGHQIETNP---NAALV-FFWPDLERQVRVEGKVEKL 120 (217)
T ss_pred CCceEEEEEECCCCCEEEE---EEEEEEECCCcEEEEECCCChHHHHHHhCC---cEEEE-EEeCCCCEEEEEEEEEEEC
Confidence 4554444443 5778777 799999999999999999999999999999 99999 6666 89999999999999
Q ss_pred CHHHHHHHHhhCCCCCcceeeecCCCCcc-CHHHHHHHHHHHHhHhcCCCCCCCCCCC
Q psy10276 116 TQDRFEDLYNREPLYCKIRAHLCHQDQAT-DWDEAKATHDAIYDKCKRGVDLPMPGHL 172 (172)
Q Consensus 116 ~~eesd~YF~sRPr~SQIgAwaS~QS~~i-~R~~Le~r~~~~~~kf~~~~~VPrP~~~ 172 (172)
+++++++||++||..||+.+|+|+||+++ ++++|++++.++.+++.+ .++|+|++|
T Consensus 121 ~~~~~~~~w~~~~~~sr~~~~~~~q~~~~~~~~~l~~~~~~~~~~~~~-~~~p~p~~f 177 (217)
T TIGR00558 121 PREESDAYFKSRPRGSRIGAWASRQSDVISNREELESKALKNTEKFED-AEIPRPDYW 177 (217)
T ss_pred CHHHHHHHHHhCChhhcceEEcCCCCcccCCHHHHHHHHHHHHhhccC-CCCCCCCce
Confidence 99999999999999999999999999998 899999999999988864 358999997
No 7
>KOG2586|consensus
Probab=99.59 E-value=1.6e-16 Score=134.33 Aligned_cols=49 Identities=33% Similarity=0.525 Sum_probs=47.3
Q ss_pred ehheeccee----eeeeeccceecchhhHhhhhhcccCccccccccCCCCcee
Q psy10276 8 YASVLFFFK----NVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRL 56 (172)
Q Consensus 8 ~~~~~f~~~----~vrveg~~e~~~~~~~~~~~~~~~~~~ki~a~~g~PSsRi 56 (172)
+|||+|+|+ ||||||++|+|++|++|.||++|||+|+||||.|++|..|
T Consensus 105 ~Aal~Fyw~~l~rQVRveG~ve~l~~ee~e~yf~srp~~SqIga~~s~qs~vI 157 (228)
T KOG2586|consen 105 NAALLFYWEDLNRQVRVEGIVEKLPREEAEAYFKSRPRASQIGAWASPQSEVI 157 (228)
T ss_pred cceEEEeehhccceeEEEeccccCCHHHHHHHHhcCcchhhccceecCCCCcc
Confidence 599999996 9999999999999999999999999999999999999985
No 8
>COG0259 PdxH Pyridoxamine-phosphate oxidase [Coenzyme metabolism]
Probab=99.58 E-value=2e-16 Score=133.42 Aligned_cols=78 Identities=26% Similarity=0.375 Sum_probs=64.1
Q ss_pred ehheeccee----eeeeeccceecchhhHhhhhhcccCccccccccCCCCcee-eEEEEeeeecCCceEEEecCCCchhh
Q psy10276 8 YASVLFFFK----NVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRL-FRFLFLHVRVEGELEILTRDRFEDLY 82 (172)
Q Consensus 8 ~~~~~f~~~----~vrveg~~e~~~~~~~~~~~~~~~~~~ki~a~~g~PSsRi-~R~VLLK~~de~Gf~F~Tn~~S~Kg~ 82 (172)
|||++|+|+ ||||+|..|+|+.+++..||.+|||||+||||+++||..| .|.+|.|.+-+ .-.|..
T Consensus 94 ~Aal~F~W~~L~RQVrv~G~ve~vs~eesd~Yf~sRPr~S~iGAWAS~QS~~i~~r~~Le~~~ae---------~~~kf~ 164 (214)
T COG0259 94 YAALLFPWKELERQVRVEGRVERVSDEESDAYFASRPRGSQIGAWASKQSRPIASRAALEAKVAE---------LTAKFA 164 (214)
T ss_pred ceeEEecchhccceEEEeeeeeeCCHHHHHHHHhcCCCcCccchhhccCccccCCHHHHHHHHHH---------HHHhcC
Confidence 799999997 9999999999999999999999999999999999999985 45555444322 234555
Q ss_pred ccccccccccceeeccCCCC
Q psy10276 83 NREPLYCKIRAHLCHPFWMA 102 (172)
Q Consensus 83 eL~~nP~~~~AAL~F~~w~l 102 (172)
+-+ +||| .+|..
T Consensus 165 ~~~-iP~P-------~~WgG 176 (214)
T COG0259 165 DGE-IPRP-------PHWGG 176 (214)
T ss_pred CCC-CCCC-------CCccc
Confidence 544 8999 99963
No 9
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=99.17 E-value=5e-12 Score=118.68 Aligned_cols=49 Identities=29% Similarity=0.502 Sum_probs=47.1
Q ss_pred ehheeccee----eeeeeccceecchhhHhhhhhcccCccccccccCCCCcee
Q psy10276 8 YASVLFFFK----NVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRL 56 (172)
Q Consensus 8 ~~~~~f~~~----~vrveg~~e~~~~~~~~~~~~~~~~~~ki~a~~g~PSsRi 56 (172)
+|||+|+|+ ||||+|..|.++++.++.||.+|||+|+||||.++||..+
T Consensus 419 ~aal~F~w~~l~rQVRi~G~v~~~~~~es~~yf~sRp~~Sqi~A~aS~QS~~i 471 (544)
T PLN02918 419 SAALLFYWEELNRQVRVEGSVQKVPESESENYFHSRPRGSQIGAIVSKQSSVV 471 (544)
T ss_pred cEEEEeeeccccEEEEEEEEEEECCHHHHHHHHHhCCccccceEEecCCCCcC
Confidence 689999996 9999999999999999999999999999999999999974
No 10
>PF01243 Pyridox_oxidase: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR011576 Pyridoxamine 5'-phosphate oxidase (PNPOx; 1.4.3.5 from EC) is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This reaction serves as the terminal step in the de novo biosynthesis of PLP in Escherichia coli and as a part of the salvage pathway of this coenzyme in both E. coli and mammalian cells [, ]. The binding sites for FMN and for substrate have been highly conserved throughout evolution. This entry represents the FMN-binding domain present in pyridoxamine 5'-phosphate oxidases, as well as in a number of proteins that have not been demonstrated to have enzymatic activity. The FMN-binding domain has a structure consisting of a beta-barrel with Greek key topology, and is related to the ferredoxin reductase-like FAD-binding domain. PNPOx has a different dimerisation mode than that found in flavin reductases, which also carry an FMN-binding domain with a similar topology. ; GO: 0004733 pyridoxamine-phosphate oxidase activity, 0010181 FMN binding, 0055114 oxidation-reduction process; PDB: 2IG6_A 1CI0_A 2HQ7_B 2HTD_B 3EC6_A 1WV4_B 1DNL_A 1G76_A 1G79_A 1G77_A ....
Probab=98.96 E-value=2e-09 Score=74.48 Aligned_cols=83 Identities=19% Similarity=0.247 Sum_probs=64.4
Q ss_pred hhHhhhhhcccCcccccc--ccCCCCceeeEEEEeeeecC-CceEEEecCCCchhhccccccccccceeeccCCC-CCce
Q psy10276 30 DRFEDLYNREPLYCKIRA--HLCHPSSRLFRFLFLHVRVE-GELEILTRDRFEDLYNREPLYCKIRAHLCHPFWM-ASKR 105 (172)
Q Consensus 30 ~~~~~~~~~~~~~~ki~a--~~g~PSsRi~R~VLLK~~de-~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~-l~RQ 105 (172)
|....+++ ++..+-+++ .+|.|.++. |.....++ ..+.|+|+..|+|.++|.+|| +|+|+|.... ..++
T Consensus 3 ~~~~~~l~-~~~~~~laTv~~dG~P~~~~---v~~~~~~~~~~i~~~t~~~~~k~~nl~~np---~v~l~~~~~~~~~~~ 75 (89)
T PF01243_consen 3 EEIREFLE-ESKYCVLATVDEDGRPHASP---VWFVYDDDDNTIYFATNPGSRKVRNLRRNP---RVSLLFCDPEGTRRG 75 (89)
T ss_dssp HHHHHHHH-STSEEEEEEEETTSEEEEEE---EEEEEECTTTEEEEEEETTSHHHHHHHHST---EEEEEEEETTTTTEE
T ss_pred HHHHHHhc-CCCEEEEEEECCCCCEEEEE---EeeecCCceeEEEEeecCCCCchhhCccCC---eEEEEEEEcCcCceE
Confidence 34445555 556666776 567777774 44443333 479999999999999999999 9999966666 7899
Q ss_pred EEEEEeeEEcCHHH
Q psy10276 106 VRVEGELEILTQDR 119 (172)
Q Consensus 106 VRIeG~vekl~~ee 119 (172)
|+|.|.|+.++++|
T Consensus 76 v~~~G~a~~~~d~E 89 (89)
T PF01243_consen 76 VRVSGTAEILTDEE 89 (89)
T ss_dssp EEEEEEEEEESHHH
T ss_pred EEEEEEEEEEcCCC
Confidence 99999999999987
No 11
>PLN03049 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=98.89 E-value=2.2e-10 Score=105.36 Aligned_cols=49 Identities=27% Similarity=0.515 Sum_probs=46.7
Q ss_pred ehheeccee----eeeeeccceecchhhHhhhhhcccCccccccccCCCCcee
Q psy10276 8 YASVLFFFK----NVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRL 56 (172)
Q Consensus 8 ~~~~~f~~~----~vrveg~~e~~~~~~~~~~~~~~~~~~ki~a~~g~PSsRi 56 (172)
+|||+|+|+ ||||+|..|+++.+.++.||.+||++|+||||++.+|..+
T Consensus 337 ~aal~F~w~~~~rQvRv~G~a~~~~~~~s~~yf~~rp~~sq~~a~as~qs~~i 389 (462)
T PLN03049 337 KASLVFYWDGLHRQVRVEGSVEKVSEEESDQYFHSRPRGSQIGALVSKQSTVI 389 (462)
T ss_pred cEEEEeecCCCCEEEEEEEEEEECCHHHHHHHHHhCChhhhhhheeCCCCCcC
Confidence 689999997 9999999999999999999999999999999999999863
No 12
>PF12766 Pyridox_oxase_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024624 Pyridoxamine 5'-phosphate oxidase catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP), the terminal step in the de novo biosynthesis of PLP in Escherichia coli and part of the salvage pathway of this coenzyme in both E. coli and mammalian cells. This entry represents the FMN-binding domain of pyridoxamine 5'-phosphate oxidases that belong to the Alr4036 family.; GO: 0010181 FMN binding; PDB: 2I51_B 2OU5_B.
Probab=98.59 E-value=5.1e-08 Score=73.51 Aligned_cols=57 Identities=19% Similarity=0.135 Sum_probs=46.7
Q ss_pred eEEEEeeeecCC------ceEEEecCCCchhhccc-cccccccceeeccCCCCCceEEEEEeeEEcC
Q psy10276 57 FRFLFLHVRVEG------ELEILTRDRFEDLYNRE-PLYCKIRAHLCHPFWMASKRVRVEGELEILT 116 (172)
Q Consensus 57 ~R~VLLK~~de~------Gf~F~Tn~~S~Kg~eL~-~nP~~~~AAL~F~~w~l~RQVRIeG~vekl~ 116 (172)
+|+|.|.+++++ -+.|+|+-.|.|..+|. .|| .++++|+.-...-|+||.|.+..++
T Consensus 37 ~RTvVlRgf~~~~~~~~~~L~f~TD~RS~Kv~~l~~~~p---~~e~~~~~~~~~~Q~Ri~G~a~ii~ 100 (100)
T PF12766_consen 37 VRTVVLRGFDPDLKPESDLLTFHTDARSPKVAQLASANP---RVELVFWFPETREQFRIRGRASIIG 100 (100)
T ss_dssp EEEEEEEEEETT----TTEEEEEEETTSHHHHHHH-H-----EEEEEEEECCCTEEEEEEEEEEEE-
T ss_pred eeEEEEcCcccccccccCeEEEEecCCchhHHHHhccCC---CEEEEEEeCCccEEEEEEEEEEEEC
Confidence 468999999986 49999999999999999 999 9999933334889999999998763
No 13
>TIGR03618 Rv1155_F420 PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes.
Probab=98.47 E-value=2.4e-07 Score=67.62 Aligned_cols=65 Identities=17% Similarity=0.049 Sum_probs=50.8
Q ss_pred ccCCCCceeeEEEEe-eeecCCceEEEecCCCchhhccccccccccceeeccCCC-CC-ceEEEEEeeEEcCHHH
Q psy10276 48 HLCHPSSRLFRFLFL-HVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWM-AS-KRVRVEGELEILTQDR 119 (172)
Q Consensus 48 ~~g~PSsRi~R~VLL-K~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~-l~-RQVRIeG~vekl~~ee 119 (172)
.+|.|..+. |.. ...+++.+.|+|+..|+|.++|+.|| +|+|+ +++. .. ++|+|+|.++.+++++
T Consensus 7 ~~G~P~~~p---v~~~~~~~~~~l~f~t~~~s~k~~~l~~np---~v~l~-~~~~~~~~~~v~i~G~a~~v~d~~ 74 (117)
T TIGR03618 7 ADGRPQLSP---VWFGVDPDGDILVVSTTAGRAKARNLRRDP---RVSLS-VLDPDFPYRYVEVEGTAELVEDPD 74 (117)
T ss_pred CCCCEEEEE---EEEEEcCCCCEEEEEecCCcHhhHhhhhCC---eEEEE-EECCCCCccEEEEEEEEEEecCCc
Confidence 467787773 222 22244458899999999999999999 99999 6665 44 8999999999998754
No 14
>TIGR03667 Rv3369 PPOX class probable F420-dependent enzyme, Rv3369 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=98.24 E-value=4.5e-06 Score=64.03 Aligned_cols=77 Identities=17% Similarity=0.100 Sum_probs=56.4
Q ss_pred Ccccccc--ccCCCCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCC-C-CCceEEEEEeeEEcC
Q psy10276 41 LYCKIRA--HLCHPSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFW-M-ASKRVRVEGELEILT 116 (172)
Q Consensus 41 ~~~ki~a--~~g~PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w-~-l~RQVRIeG~vekl~ 116 (172)
+.+-+++ .+|.|..+- |.+. .+++.+.|+|+..|+|.++|..|| +|+|+ ++. . ..++|+|+|+++.++
T Consensus 15 ~~~~LaT~~~dG~P~~~P--~~~~--~~d~~l~~~t~~~s~K~~~l~~np---~Vsl~-~~~~~~~~~~v~v~G~a~i~~ 86 (130)
T TIGR03667 15 SIVWLTTVRRSGQPQPVP--VWFL--WDGTEFLIYSRPQAAKLRNIRRNP---RVSLH-LNSDGRGGDVVVFTGTAEVVA 86 (130)
T ss_pred CeEEEEEECCCCceEEEE--EEEE--EECCEEEEEeCCcCHHHHHHhhCC---cEEEE-EEcCCCCceEEEEEEEEEEeC
Confidence 3344444 477888873 2332 356778899999999999999999 99999 444 3 348999999999987
Q ss_pred HH----HHHHHHh
Q psy10276 117 QD----RFEDLYN 125 (172)
Q Consensus 117 ~e----esd~YF~ 125 (172)
+. +.++|++
T Consensus 87 d~~~~~~~~~~~~ 99 (130)
T TIGR03667 87 DAPPAREIPAYLA 99 (130)
T ss_pred CchhHHHHHHHHH
Confidence 55 4445554
No 15
>PRK05679 pyridoxamine 5'-phosphate oxidase; Provisional
Probab=98.16 E-value=1e-06 Score=72.37 Aligned_cols=49 Identities=29% Similarity=0.440 Sum_probs=46.2
Q ss_pred ehheeccee----eeeeeccceecchhhHhhhhhcccCccccccccCCCCcee
Q psy10276 8 YASVLFFFK----NVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRL 56 (172)
Q Consensus 8 ~~~~~f~~~----~vrveg~~e~~~~~~~~~~~~~~~~~~ki~a~~g~PSsRi 56 (172)
+++|+|+|+ ||||+|.++.++.+.++.||..+|+++++++|.++|+..+
T Consensus 75 ~val~~~~~~~~~qvrv~G~a~~~~~~~~~~~w~~~p~~~r~~~~~~~qg~~i 127 (195)
T PRK05679 75 KAALLFPWKSLERQVRVEGRVEKVSAEESDAYFASRPRGSQIGAWASKQSRPI 127 (195)
T ss_pred cEEEEEecCCCCEEEEEEEEEEEeCHHHHHHHHHhCCHhhhceeeeCCCCCcc
Confidence 578999996 9999999999999999999999999999999999999984
No 16
>TIGR00558 pdxH pyridoxamine-phosphate oxidase. This model is similar to Pyridox_oxidase from PFAM but is designed to find only true pyridoxamine-phosphate oxidase and to ignore the related protein PhzG involved in phenazine biosynthesis. This protein from E. coli was characterized as a homodimer with two FMN per dimer.
Probab=97.86 E-value=8.7e-06 Score=68.34 Aligned_cols=49 Identities=31% Similarity=0.537 Sum_probs=46.1
Q ss_pred ehheeccee----eeeeeccceecchhhHhhhhhcccCccccccccCCCCcee
Q psy10276 8 YASVLFFFK----NVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRL 56 (172)
Q Consensus 8 ~~~~~f~~~----~vrveg~~e~~~~~~~~~~~~~~~~~~ki~a~~g~PSsRi 56 (172)
+++|+|+|+ ||||+|..+.++.+.+..||.++|+++++.+|.++|+..+
T Consensus 97 ~v~l~f~~~~~~~qvrv~G~a~~~~~~~~~~~w~~~~~~sr~~~~~~~q~~~~ 149 (217)
T TIGR00558 97 NAALVFFWPDLERQVRVEGKVEKLPREESDAYFKSRPRGSRIGAWASRQSDVI 149 (217)
T ss_pred cEEEEEEeCCCCEEEEEEEEEEECCHHHHHHHHHhCChhhcceEEcCCCCccc
Confidence 478999995 9999999999999999999999999999999999999973
No 17
>COG3871 Uncharacterized stress protein (general stress protein 26) [General function prediction only]
Probab=97.51 E-value=0.00017 Score=58.49 Aligned_cols=79 Identities=18% Similarity=0.181 Sum_probs=59.6
Q ss_pred Ccccccc-----ccCCCCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCCCCCceEEEEEeeEEc
Q psy10276 41 LYCKIRA-----HLCHPSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWMASKRVRVEGELEIL 115 (172)
Q Consensus 41 ~~~ki~a-----~~g~PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~l~RQVRIeG~vekl 115 (172)
.++|+|. .+|+|.+|. |.+..+-...-+-|+||.+|+|.++|+.|| +|+++|-+-.-.-=|-|+|++|.+
T Consensus 15 e~~kv~~l~tv~~~g~phsRp--M~f~hdg~~~tiwf~T~kds~~v~eik~n~---~v~v~~~~~~~~~fv~v~Gtael~ 89 (145)
T COG3871 15 EGSKVGMLATVQENGHPHSRP--MTFNHDGPKGTIWFFTNKDSRKVEEIKKNP---KVCVLFGYDDHDAFVEVSGTAELV 89 (145)
T ss_pred hhCceEEEEEecCCCCccccc--eeccCCCCcccEEeeccCchHHHHHHhhCC---cEEEEEecCCCcceEEEEEEEEee
Confidence 3555553 578999995 454433223668899999999999999999 999997777666679999999999
Q ss_pred CHHHH-HHHH
Q psy10276 116 TQDRF-EDLY 124 (172)
Q Consensus 116 ~~ees-d~YF 124 (172)
.+... |.+|
T Consensus 90 ~dra~~d~~W 99 (145)
T COG3871 90 EDRAKIDELW 99 (145)
T ss_pred ccHHHHHHhh
Confidence 76543 4444
No 18
>TIGR03666 Rv2061_F420 PPOX class probable F420-dependent enzyme, Rv2061 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=96.59 E-value=0.0065 Score=47.19 Aligned_cols=70 Identities=13% Similarity=-0.013 Sum_probs=50.3
Q ss_pred cccCCCCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCCC-CCceEEEEEeeEEcCHHHHHHH
Q psy10276 47 AHLCHPSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWM-ASKRVRVEGELEILTQDRFEDL 123 (172)
Q Consensus 47 a~~g~PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~-l~RQVRIeG~vekl~~eesd~Y 123 (172)
..+|.|..+- |.. ..+++.+.|+|..+++|.++|..|| +|++++.=-. -.+-|.|+|+++.++++|.++-
T Consensus 21 ~~dG~P~~~P---v~~-~~d~g~l~f~t~~~~~K~~nl~~np---~Vsl~v~~~~~~~~~v~v~G~A~~v~~~e~~~~ 91 (132)
T TIGR03666 21 RKDGTPVPTP---VWA-AVDGDKLLVRTKEDSWKVKRIRNNP---RVTLAPCDRRGRPTGPVVPGRARILDGAETARA 91 (132)
T ss_pred CCCCcEEEEE---EEE-EEECCEEEEEECCcCHHHHHHHhCC---CEEEEEECCCCCEeEEEEEEEEEEEcchhHHHH
Confidence 3455555552 222 3567889999999999999999999 9999842111 1135999999999987777643
No 19
>PRK03467 hypothetical protein; Provisional
Probab=95.69 E-value=0.032 Score=45.11 Aligned_cols=63 Identities=14% Similarity=0.052 Sum_probs=52.6
Q ss_pred ecCCce--EEEecCCCchhhccccccccccceeeccCC----CCCceEEEEEeeEEcCHHH----HHHHHhhCCCC
Q psy10276 65 RVEGEL--EILTRDRFEDLYNREPLYCKIRAHLCHPFW----MASKRVRVEGELEILTQDR----FEDLYNREPLY 130 (172)
Q Consensus 65 ~de~Gf--~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w----~l~RQVRIeG~vekl~~ee----sd~YF~sRPr~ 130 (172)
+|++++ .|.|+.+|+.++.+.+|| ++|.+-.-- ..-+-|-++|.+..|+.+| -+.|+..=|..
T Consensus 39 fd~~~~~l~~~S~~~TrH~~~~~~np---~VAgTI~~~~~~v~~I~GvQ~~G~~~~l~~~e~~~Ar~~Y~~rFP~A 111 (144)
T PRK03467 39 FDAQKVAFYLLTEEKTRHGQMMGPNA---QVAGTVNGQPKTVALIRGVQFKGEIRRLEGEESDAARKRYNRRFPVA 111 (144)
T ss_pred EcCCCeEEEEEcCCCCHHHHHHhhCC---CEEEEEcCCCcchhhceEEEEEEEEEecChhHHHHHHHHHHHhCcch
Confidence 577666 688999999999999999 999984332 2556777999999999999 88999998865
No 20
>COG5135 Uncharacterized conserved protein [Function unknown]
Probab=95.15 E-value=0.015 Score=50.27 Aligned_cols=85 Identities=14% Similarity=0.136 Sum_probs=61.9
Q ss_pred cCCCCceeeEEEEeeeec-----CCceEEEecCCCchhhcccccc--------ccccceeeccCCCCCceEEEEEeeEEc
Q psy10276 49 LCHPSSRLFRFLFLHVRV-----EGELEILTRDRFEDLYNREPLY--------CKIRAHLCHPFWMASKRVRVEGELEIL 115 (172)
Q Consensus 49 ~g~PSsRi~R~VLLK~~d-----e~Gf~F~Tn~~S~Kg~eL~~nP--------~~~~AAL~F~~w~l~RQVRIeG~vekl 115 (172)
.+.|..| +|.+.++- .+-++|-|+..|.|..||..-| -|-.+-+||++...-.|+||.|.+-.+
T Consensus 35 ~~~PrnR---TVvfRgFl~~D~~tn~L~F~TD~rS~Ki~ei~~qp~~~~~s~~~~~~fEaC~yfP~T~eQ~RisGQ~~l~ 111 (245)
T COG5135 35 TNKPRNR---TVVFRGFLFHDKRTNVLTFNTDMRSSKITEIFIQPNSNNSSDSKTPFFEACFYFPETWEQYRISGQCFLI 111 (245)
T ss_pred CCCCccc---eEEEeeeeecccccceEEEecchhhhhhhHHhhccccCCCCCCCccHHHHHhcccchhhheEeeeeEEEE
Confidence 3778887 45555543 4578999999999999997665 111677884444488999999999999
Q ss_pred CHHHHHHHHhhCCCCCcceeeec
Q psy10276 116 TQDRFEDLYNREPLYCKIRAHLC 138 (172)
Q Consensus 116 ~~eesd~YF~sRPr~SQIgAwaS 138 (172)
+.+.++.-| -|..+-+--..+
T Consensus 112 s~~~~~~~~--~Pa~~~t~d~l~ 132 (245)
T COG5135 112 SKQFKYDIF--SPAFSETNDDLT 132 (245)
T ss_pred chhhcCccc--Cchhhhhhhhhc
Confidence 999997766 466555544444
No 21
>TIGR03668 Rv0121_F420 PPOX class probable F420-dependent enzyme, Rv0121 family. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomycetales, make F420. A variant of the Partial Phylogenetic Profiling algorithm, SIMBAL, shows that this protein likely binds F420 in a cleft similar to that in which the homologous enzyme pyridoxamine phosphate oxidase (PPOX) binds FMN.
Probab=94.57 E-value=0.11 Score=41.03 Aligned_cols=78 Identities=19% Similarity=0.175 Sum_probs=49.5
Q ss_pred hhhhcccCcccccc--ccCCCCceeeEEEEeeeec-------CCceEEEe------cCCCchhhccccccccccceeecc
Q psy10276 34 DLYNREPLYCKIRA--HLCHPSSRLFRFLFLHVRV-------EGELEILT------RDRFEDLYNREPLYCKIRAHLCHP 98 (172)
Q Consensus 34 ~~~~~~~~~~ki~a--~~g~PSsRi~R~VLLK~~d-------e~Gf~F~T------n~~S~Kg~eL~~nP~~~~AAL~F~ 98 (172)
.++. .++.+.+++ .+|.|...=+-++ ++ ++.+.|.+ --+++|.++|..|| ++||++.
T Consensus 7 ~~L~-~~~~~~LaTv~~dG~P~vvPv~f~----~d~~~~~~~~~~i~~~~~~~~~t~~~~~K~~ni~~nP---rVs~~v~ 78 (141)
T TIGR03668 7 TRFA-QARVARLATVSPDGEPHLVPVVFA----VGAGAVAAGDAVIYTAVDAKPKTTPRLRRLRNIEENP---RVSLLVD 78 (141)
T ss_pred HHHc-cCCEEEEEEECCCCCeEEEeEEEE----EccccccCCCCEEEEEecCCCCcccccHHHHHHhhCC---CEEEEEe
Confidence 3444 456666764 4567776632233 23 33333332 23578999999999 9999842
Q ss_pred ----CCCCCceEEEEEeeEEcCHHH
Q psy10276 99 ----FWMASKRVRVEGELEILTQDR 119 (172)
Q Consensus 99 ----~w~l~RQVRIeG~vekl~~ee 119 (172)
-|.-.+.|.|+|+++.+++++
T Consensus 79 ~~~~~~~~~~~v~v~G~a~~~~d~~ 103 (141)
T TIGR03668 79 RYDDDWTRLWWVRADGRAEILRPGE 103 (141)
T ss_pred cCCCCccceEEEEEEEEEEEecCCc
Confidence 122224699999999998886
No 22
>PRK06733 hypothetical protein; Provisional
Probab=90.35 E-value=0.95 Score=36.93 Aligned_cols=79 Identities=14% Similarity=0.079 Sum_probs=57.4
Q ss_pred hhhhhcccCc-ccccc-ccCCCCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCCCCCceEEEEE
Q psy10276 33 EDLYNREPLY-CKIRA-HLCHPSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWMASKRVRVEG 110 (172)
Q Consensus 33 ~~~~~~~~~~-~ki~a-~~g~PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~l~RQVRIeG 110 (172)
.++++..|.. .-..+ .+|-|..--+-. .+-.|++-+.|--|+.|+=..+|.+|| +|+|+ +|++ +.-..|.|
T Consensus 14 ~~~L~~~~~~~laTv~kedG~Pnv~~Isw--v~a~d~~tIr~A~~~~skT~~NLk~Np---~v~I~-~~~~-~~~yqIkG 86 (151)
T PRK06733 14 VQLLRKERIVTLATTDFEKQVPNVSAISW--VYAVSKTSIRFAVDQRSRIVENIRHNP---GVVLT-IIAN-ESVYSISG 86 (151)
T ss_pred HHHHcCCceEEEEEEccCCCceeEEEEEE--EEEcCCCEEEEEEccCcHhHHHHhhCC---cEEEE-EEeC-CcEEEEEE
Confidence 3455555543 33344 378998774333 455788999999999999999999999 99999 6665 33377888
Q ss_pred eeEEcCHH
Q psy10276 111 ELEILTQD 118 (172)
Q Consensus 111 ~vekl~~e 118 (172)
.++.+++.
T Consensus 87 ~a~i~~e~ 94 (151)
T PRK06733 87 AAEILTDR 94 (151)
T ss_pred EEEEEeee
Confidence 88877744
No 23
>COG5015 Uncharacterized conserved protein [Function unknown]
Probab=85.97 E-value=2.8 Score=33.81 Aligned_cols=73 Identities=16% Similarity=0.185 Sum_probs=55.4
Q ss_pred cCCCCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCCCCCceEEEEEeeEEcCHHHHHH-HHhhC
Q psy10276 49 LCHPSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWMASKRVRVEGELEILTQDRFED-LYNRE 127 (172)
Q Consensus 49 ~g~PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~l~RQVRIeG~vekl~~eesd~-YF~sR 127 (172)
+|.|.+|.+-.+|+ +.+-+-|.|+-+-.=.++|.+|| .+++| -.-.=.--||++|.|+-+++-+-.. -|..-
T Consensus 21 ~gkPrvRpfq~~f~---~g~KlYfcTantK~~yKqik~np---~vefc-g~~kdg~~vrlrg~a~f~~nielkk~ale~y 93 (132)
T COG5015 21 DGKPRVRPFQVMFV---EGEKLYFCTANTKPYYKQIKKNP---EVEFC-GMDKDGVMVRLRGRAEFVENIELKKLALEIY 93 (132)
T ss_pred CCCcceeeccceee---eCCEEEEEeCCChHHHHHHhhCC---CeEEE-EecCCceEEEEeeeEEeccchHHHHHHhhhc
Confidence 67777775445553 55788899999988899999999 99999 4444455699999999998877665 44444
Q ss_pred C
Q psy10276 128 P 128 (172)
Q Consensus 128 P 128 (172)
|
T Consensus 94 P 94 (132)
T COG5015 94 P 94 (132)
T ss_pred h
Confidence 4
No 24
>TIGR00026 hi_GC_TIGR00026 deazaflavin-dependent nitroreductase family protein. This model represents a family of proteins found in paralogous families in the genera Mycobacterium and Streptomyces. Seven members are in Mycobacterium tuberculosis. Member protein Rv3547 has been characterized as a deazaflavin-dependent nitroreductase.
Probab=78.96 E-value=12 Score=28.68 Aligned_cols=69 Identities=12% Similarity=0.064 Sum_probs=49.6
Q ss_pred cccccCCCCceeeEEEEeeeecCCceEEE-ecCC----CchhhccccccccccceeeccCCCCCceEEEEEeeEEcCHHH
Q psy10276 45 IRAHLCHPSSRLFRFLFLHVRVEGELEIL-TRDR----FEDLYNREPLYCKIRAHLCHPFWMASKRVRVEGELEILTQDR 119 (172)
Q Consensus 45 i~a~~g~PSsRi~R~VLLK~~de~Gf~F~-Tn~~----S~Kg~eL~~nP~~~~AAL~F~~w~l~RQVRIeG~vekl~~ee 119 (172)
+|.-+|.|-.. .|.=-.+++++..+ +|.. +...++|.+|| .+.+.+ +.-+..+.+..++++|
T Consensus 15 ~GRkSG~~r~t----pl~~~~~~~~~~vvas~~G~~~~p~W~~Nl~A~p---~v~v~~------~g~~~~~~ar~v~~~e 81 (113)
T TIGR00026 15 TGRKSGKPRTT----PVTYVRHDPGVLIVASNGGAPRHPDWYKNLKANP---RVRVRV------GGKTFVATARLVSGDE 81 (113)
T ss_pred CCCCCCcEEEE----EEEEEEECCEEEEEEecCCCCCCCHHHHHhhhCC---cEEEEE------CCEEEEEEEEECCchh
Confidence 45556665544 22222356777766 8884 77799999999 888862 3346899999999999
Q ss_pred HHHHHhh
Q psy10276 120 FEDLYNR 126 (172)
Q Consensus 120 sd~YF~s 126 (172)
.++.|..
T Consensus 82 ~~~~~~~ 88 (113)
T TIGR00026 82 RDQLWAG 88 (113)
T ss_pred HHHHHHH
Confidence 9998864
No 25
>PF13883 Pyrid_oxidase_2: Pyridoxamine 5'-phosphate oxidase; PDB: 1XHN_C.
Probab=78.18 E-value=3.3 Score=33.40 Aligned_cols=62 Identities=19% Similarity=0.089 Sum_probs=41.6
Q ss_pred CCceEEEecCCCchhhccccccccccceeeccCCCCC--------------ceEEEEEeeEEcCHHH----HHHHHhhCC
Q psy10276 67 EGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWMAS--------------KRVRVEGELEILTQDR----FEDLYNREP 128 (172)
Q Consensus 67 e~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~l~--------------RQVRIeG~vekl~~ee----sd~YF~sRP 128 (172)
.+-..|+-..-+.=.++|.+|| +++|+..++... -.|.+.|.+++|+++| .+.|+..-|
T Consensus 51 ~G~p~~lls~la~ht~nl~~~~---r~SL~i~~~~~~~~~~~~~dp~~~~~~RvtL~G~~~~v~~~e~~~a~~~yl~~HP 127 (170)
T PF13883_consen 51 TGRPIFLLSPLAQHTRNLKADP---RVSLTISEPQGGDCDNSGVDPEDPACPRVTLTGRAEPVPPDEAAAARAAYLSRHP 127 (170)
T ss_dssp -S--EEEE-TTSHHHHHHHH-----EEEEEEEGGGSSHHHHHT--TTSTTS-EEEEEEEEEE--TTTHHHHHHHHHHH-G
T ss_pred CCCEEEEEeCccHHHHHHhhCC---CEEEEEecCCCCcccccCCCCCCCCCcEEEEEEEEEEcCchHHHHHHHHHHHHCc
Confidence 3456678888889999999999 999996666432 4789999999998765 677888877
Q ss_pred CCC
Q psy10276 129 LYC 131 (172)
Q Consensus 129 r~S 131 (172)
...
T Consensus 128 ~a~ 130 (170)
T PF13883_consen 128 DAK 130 (170)
T ss_dssp GGG
T ss_pred Ccc
Confidence 543
No 26
>KOG4558|consensus
Probab=74.90 E-value=3.7 Score=35.84 Aligned_cols=76 Identities=14% Similarity=0.139 Sum_probs=49.1
Q ss_pred ccccccCCCCceeeEEEEeeeec-----CCceEEEecCCCchhhcc------ccc------cccccceeeccCCCCCceE
Q psy10276 44 KIRAHLCHPSSRLFRFLFLHVRV-----EGELEILTRDRFEDLYNR------EPL------YCKIRAHLCHPFWMASKRV 106 (172)
Q Consensus 44 ki~a~~g~PSsRi~R~VLLK~~d-----e~Gf~F~Tn~~S~Kg~eL------~~n------P~~~~AAL~F~~w~l~RQV 106 (172)
.|+.-.+.|+.| +|.+.++. .+.+.|-|...|.|--+. ++- --||.--+||++-..-.|+
T Consensus 32 T~~~l~~~PrnR---TVvfRgF~~h~~R~~~v~~ntdlrssk~~~sf~~~~~a~~~~~~~~~~P~~femC~yfp~TweQ~ 108 (251)
T KOG4558|consen 32 TLPTLEIYPRNR---TVVFRGFVWHKPRPDDVLANTDLRSSKDIASFKAAEIAEQQKNTFPSGPIPFEMCGYFPKTWEQI 108 (251)
T ss_pred ecccccCCcccc---eEEEecceecCCCCcceeeeccchhhhhhhhhhchhhhccccccccCCCcccceeeeechhhhhe
Confidence 456677889998 45555443 234666677666664332 211 0145577884444488999
Q ss_pred EEEEeeEEcCHHHHHH
Q psy10276 107 RVEGELEILTQDRFED 122 (172)
Q Consensus 107 RIeG~vekl~~eesd~ 122 (172)
||.|.+.-++.+.+|.
T Consensus 109 RisGqi~~it~~~~d~ 124 (251)
T KOG4558|consen 109 RISGQIWLITPELADR 124 (251)
T ss_pred EecceEEEEccccccc
Confidence 9999999998776654
No 27
>PF12900 Pyridox_ox_2: Pyridoxamine 5'-phosphate oxidase; InterPro: IPR024747 Pyridoxamine 5'-phosphate oxidase is a FMN flavoprotein that catalyses the oxidation of pyridoxamine-5-P (PMP) and pyridoxine-5-P (PNP) to pyridoxal-5-P (PLP). This entry contains several uncharacterised proteins, some annotated as pyridoxamine 5'-phosphate oxidase-related.; PDB: 3U5W_A 3U0I_A 2X1K_A 1W3Q_A 1W3P_A 1W3O_A 2VPA_A 2X1J_A 1W3R_A 3FKH_A ....
Probab=74.06 E-value=9 Score=29.16 Aligned_cols=90 Identities=12% Similarity=0.020 Sum_probs=52.5
Q ss_pred hhhHhhhhhcccCcccccccc-CCCCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCCC--C---
Q psy10276 29 RDRFEDLYNREPLYCKIRAHL-CHPSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWM--A--- 102 (172)
Q Consensus 29 ~~~~~~~~~~~~~~~ki~a~~-g~PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~--l--- 102 (172)
++....+.++-+- +.|+-.+ +.|-.. -+.-.++++-+.|.|...++|...|.+||+-+-+.-. .=+. -
T Consensus 2 ~~e~~~iL~~~~~-g~la~~~~~~Py~v----P~~f~~~~~~ly~h~~~~g~k~~~l~~~pv~~~~~~~-~~~~~~~~~~ 75 (143)
T PF12900_consen 2 REEIWEILDRAPV-GRLAFVDDGYPYIV----PVNFVYDGGSLYFHGARGGKKIELLRNNPVCFTVDEV-DELVPAESAC 75 (143)
T ss_dssp HHHHHHHHHH-SE-EEEEEEETTEEEEE----EEEEEEETTEEEEEECSHSHHHHHHHHEEEEEEEEEE-EEEEETSCGG
T ss_pred HHHHHHHHhhCCE-EEEEEEeCCEEEEE----EEEEEEECCEEEEEECCcchHHHHhccCCeEEEEEec-CcEeecccCC
Confidence 3444455544333 3444443 444444 2233456677889999999999999988843333321 1100 0
Q ss_pred -----CceEEEEEeeEEc-CHHHHHHHH
Q psy10276 103 -----SKRVRVEGELEIL-TQDRFEDLY 124 (172)
Q Consensus 103 -----~RQVRIeG~vekl-~~eesd~YF 124 (172)
-|.|.+.|+++.| +.+|-.+.+
T Consensus 76 ~~~~~y~SVi~~G~~~~v~d~~ek~~al 103 (143)
T PF12900_consen 76 SFSMNYRSVIVFGRAEEVEDEEEKAEAL 103 (143)
T ss_dssp GEEEEEEEEEEEEEEEEEHSHHHHHHHH
T ss_pred cCcceEEEEEEEEEEEEeCCHHHHHHHH
Confidence 2899999999999 444444433
No 28
>COG3467 Predicted flavin-nucleotide-binding protein [General function prediction only]
Probab=64.48 E-value=12 Score=30.43 Aligned_cols=74 Identities=12% Similarity=-0.159 Sum_probs=52.8
Q ss_pred ccCccccccccCC-CCceeeEEEEeeeecCCceEEEecCCCchhhccccccccccceeeccCCC------------CCce
Q psy10276 39 EPLYCKIRAHLCH-PSSRLFRFLFLHVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWM------------ASKR 105 (172)
Q Consensus 39 ~~~~~ki~a~~g~-PSsRi~R~VLLK~~de~Gf~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~------------l~RQ 105 (172)
+-+-|.+|-..+. |-.. =+.=+++.+-|-|.+.-.++|..-|..|| .+|+...=-. --|.
T Consensus 22 ~~~~~~La~~~~~~Pyiv----P~~y~~~~~~lY~h~~~~grk~~~l~~~p---~V~~ev~~~~~~~~~~~~~~s~~y~S 94 (166)
T COG3467 22 AGRVGRLAFAGDGQPYVV----PLNYGYEGGHLYFHGSPEGRKIELLRKNP---LVCLEVDEIHGLVLKSPFNSSRNYRS 94 (166)
T ss_pred hCCEEEEEEcCCCCcEEE----EeEeEEeCCeEEEEeCCcchhhHHhhcCC---cEEEEEEccccceecccccCCcceEE
Confidence 4466777766666 5554 22334555668888999999999999999 9988732111 2478
Q ss_pred EEEEEeeEEcCHHH
Q psy10276 106 VRVEGELEILTQDR 119 (172)
Q Consensus 106 VRIeG~vekl~~ee 119 (172)
|-|-|+++.|++++
T Consensus 95 Vvv~G~~~~l~~~~ 108 (166)
T COG3467 95 VVVFGRAEELSDLE 108 (166)
T ss_pred EEEEeEEEEcCChH
Confidence 99999999999844
No 29
>COG2156 KdpC K+-transporting ATPase, c chain [Inorganic ion transport and metabolism]
Probab=40.28 E-value=23 Score=30.22 Aligned_cols=43 Identities=9% Similarity=-0.025 Sum_probs=27.4
Q ss_pred HHHHHHhhCCCCCc---ceeeecCCCCc-cCHHHHHHHHHHHHhHhc
Q psy10276 119 RFEDLYNREPLYCK---IRAHLCHQDQA-TDWDEAKATHDAIYDKCK 161 (172)
Q Consensus 119 esd~YF~sRPr~SQ---IgAwaS~QS~~-i~R~~Le~r~~~~~~kf~ 161 (172)
.++.||++||..+. -.+-+|-=|.- .+=.+|.+++++-.+.+.
T Consensus 62 t~~~yFhgRPsa~~~~~yn~~aSggSNl~psNp~L~~rv~~~~~~lr 108 (190)
T COG2156 62 TSPGYFHGRPSATDGEPYNAVASGGSNLGPSNPELLERVKARVAALR 108 (190)
T ss_pred CCCccccCCCcccCCCCCCccccCCcCCCCCCHHHHHHHHHHHHHHH
Confidence 36789999995443 34667755554 355677777776644443
No 30
>COG3787 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.32 E-value=70 Score=26.26 Aligned_cols=61 Identities=21% Similarity=0.133 Sum_probs=47.6
Q ss_pred ecCCc--eEEEecCCCchhhccccccccccceeeccCCC----CCceEEEEEeeEEcCHHHHH----HHHhhCC
Q psy10276 65 RVEGE--LEILTRDRFEDLYNREPLYCKIRAHLCHPFWM----ASKRVRVEGELEILTQDRFE----DLYNREP 128 (172)
Q Consensus 65 ~de~G--f~F~Tn~~S~Kg~eL~~nP~~~~AAL~F~~w~----l~RQVRIeG~vekl~~eesd----~YF~sRP 128 (172)
+|+.. |...|....+-++=+-+|| .+|.+.+--+ +-+-|-..|.+..++.++|| .|+..=|
T Consensus 34 FDek~~ali~~T~e~TrHa~l~~~ns---~VAgtv~~qsKtva~ikGVQfkge~~~l~~~q~~~Ark~Y~~rfp 104 (145)
T COG3787 34 FDEKNVALIILTEEKTRHAQLSGPNS---AVAGTVAGQSKTVALIKGVQFKGEISRLSGEQSDAARKAYNRRFP 104 (145)
T ss_pred EcccceEEEEEeccchhHHHhhCCCC---ceeeEeccCceeeeeeeeeeeeeeehhhhcchHHHHHHHHhccCc
Confidence 56554 5566888888888888999 9999955543 77899999999999999965 4665555
No 31
>PF07244 Surf_Ag_VNR: Surface antigen variable number repeat; InterPro: IPR010827 This motif is found primarily in bacterial surface antigens, normally as variable number repeats at the N terminus. The C terminus of these proteins is normally represented by IPR000184 from INTERPRO. There may also be a relationship to haemolysin activator HlyB (IPR005565 from INTERPRO). The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.; GO: 0019867 outer membrane; PDB: 2X8X_X 3MC8_A 3OG5_A 3MC9_B 2QCZ_B 3EFC_A 3Q6B_A 2QDF_A 2V9H_A.
Probab=29.13 E-value=88 Score=20.61 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=35.6
Q ss_pred ceEEEEEeeEEcCHHHHHHHHhhCCCCCcceeeecCCCCccCHHHHHHHHHHHHhHhcC
Q psy10276 104 KRVRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQDQATDWDEAKATHDAIYDKCKR 162 (172)
Q Consensus 104 RQVRIeG~vekl~~eesd~YF~sRPr~SQIgAwaS~QS~~i~R~~Le~r~~~~~~kf~~ 162 (172)
+.|.|+|....+++++-..+...+|- .+.+.+.+++..+.+.+.|.+
T Consensus 4 ~~I~i~Gn~~~~~~~~l~~~l~~~~G------------~~~~~~~i~~~~~~l~~~y~~ 50 (78)
T PF07244_consen 4 GEINIEGNLKKFSDEELRRELGLKPG------------DPFNPEKIEEDIERLQDYYKD 50 (78)
T ss_dssp EEEEEESE-SSSHHHHHHHCHSS-TT------------SBECHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCceEeCHHHHHhhcCCCCC------------CEeCHHHHHHHHHHHHHHHHH
Confidence 57999998888999988887754443 455888999999998877754
No 32
>PF02669 KdpC: K+-transporting ATPase, c chain; InterPro: IPR003820 Kdp, the high affinity ATP-driven K+-transport system of Escherichia coli, is a complex of the membrane-bound subunits KdpA, KdpB, KdpC and the small peptide KdpF. KdpC forms strong interactions with the KdpA subunit, serving to assemble and stabilise the Kdp complex []. It has been suggested that KdpC could be one of the connecting links between the energy providing subunit KdpB and the K+- transporting subunit KdpA []. The K+ transport system actively transports K+ ions via ATP hydrolysis.; GO: 0008556 potassium-transporting ATPase activity, 0006813 potassium ion transport, 0016020 membrane
Probab=26.37 E-value=39 Score=28.60 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=18.9
Q ss_pred CCceEEEEEeeE---EcCHH-HHHHHHhhCCCCCc
Q psy10276 102 ASKRVRVEGELE---ILTQD-RFEDLYNREPLYCK 132 (172)
Q Consensus 102 l~RQVRIeG~ve---kl~~e-esd~YF~sRPr~SQ 132 (172)
-.-.|...|+|. .+.+. .++.||+.||-...
T Consensus 39 nGSli~~~g~vvGS~LIgQ~ft~~~yF~~RPSA~~ 73 (188)
T PF02669_consen 39 NGSLIEDDGKVVGSALIGQPFTSPRYFHPRPSAVD 73 (188)
T ss_pred CcCEEeECCEEEEEEEecccCCCCCeeeCCCCCcC
Confidence 444566666653 22222 45799999997654
No 33
>PRK00295 hypothetical protein; Provisional
Probab=25.41 E-value=84 Score=22.09 Aligned_cols=8 Identities=25% Similarity=0.409 Sum_probs=5.9
Q ss_pred CCCCCCCC
Q psy10276 165 DLPMPGHL 172 (172)
Q Consensus 165 ~VPrP~~~ 172 (172)
+.+.||||
T Consensus 61 ~e~~PPHY 68 (68)
T PRK00295 61 EEAPPPHY 68 (68)
T ss_pred CCCCcCCC
Confidence 45788886
No 34
>PF03002 Somatostatin: Somatostatin/Cortistatin family; InterPro: IPR018142 Somatostatin inhibits the release of the pituitary growth hormone, somatotropin and inhibits the release of glucagon and insulin from the pancreas of fasted animals. Cortistatin is a cortical neuropeptide with neuronal depressant and sleep-modulating properties [].; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=23.51 E-value=29 Score=19.30 Aligned_cols=7 Identities=43% Similarity=0.790 Sum_probs=5.2
Q ss_pred eecceee
Q psy10276 11 VLFFFKN 17 (172)
Q Consensus 11 ~~f~~~~ 17 (172)
-+||||-
T Consensus 8 knffWK~ 14 (18)
T PF03002_consen 8 KNFFWKT 14 (18)
T ss_pred cceeecc
Confidence 4799983
No 35
>PRK00736 hypothetical protein; Provisional
Probab=22.77 E-value=94 Score=21.84 Aligned_cols=8 Identities=25% Similarity=0.463 Sum_probs=6.0
Q ss_pred CCCCCCCC
Q psy10276 165 DLPMPGHL 172 (172)
Q Consensus 165 ~VPrP~~~ 172 (172)
+-++||||
T Consensus 61 ~~~~PPHY 68 (68)
T PRK00736 61 PVTKPPHW 68 (68)
T ss_pred CCCCcCCC
Confidence 35789997
No 36
>PF05798 Phage_FRD3: Bacteriophage FRD3 protein; InterPro: IPR008765 This is a group of proteins of unknown function from bacteriophage T2 and related phage.
Probab=21.40 E-value=45 Score=24.51 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=20.3
Q ss_pred eccee-eeeeeccceecchhhHhhhh
Q psy10276 12 LFFFK-NVRVEGELEILTRDRFEDLY 36 (172)
Q Consensus 12 ~f~~~-~vrveg~~e~~~~~~~~~~~ 36 (172)
+=||. |+-|||.+|.|+|=-.+.|-
T Consensus 33 ~~f~~~~i~i~GPle~l~~FM~nEYC 58 (75)
T PF05798_consen 33 SKFCSIQIVIEGPLEDLTRFMANEYC 58 (75)
T ss_pred CCcceEEEEEeccHHHHHHHHHHHhc
Confidence 34776 99999999999997776664
No 37
>PRK13995 potassium-transporting ATPase subunit C; Provisional
Probab=20.58 E-value=84 Score=27.02 Aligned_cols=12 Identities=0% Similarity=-0.097 Sum_probs=9.9
Q ss_pred HHHHHhhCCCCC
Q psy10276 120 FEDLYNREPLYC 131 (172)
Q Consensus 120 sd~YF~sRPr~S 131 (172)
++.||+.||-..
T Consensus 61 ~~~YF~~RPSa~ 72 (203)
T PRK13995 61 DARFFKGRVSAV 72 (203)
T ss_pred CCCCccCCCccc
Confidence 579999999764
Done!