RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10276
(172 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.8 bits (97), Expect = 6e-05
Identities = 31/174 (17%), Positives = 52/174 (29%), Gaps = 38/174 (21%)
Query: 16 KNVRVEGELEILTRD------------RFEDLYNRE-----PLYCKIRAHLCHPSSRLFR 58
++ ++ LT D R +DL RE P I A +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWD 345
Query: 59 FLFLHVR-------VEGELEILT----RDRFEDL--YNREPLYCKIRAHLCHPFWMASKR 105
+ HV +E L +L R F+ L + P I L W +
Sbjct: 346 N-WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF---PPSAHIPTILLSLIWFDVIK 401
Query: 106 VRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQDQATDWDEAKATHDAIYDK 159
V ++ + L ++P I + + + A H +I D
Sbjct: 402 SDVM---VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDH 452
Score = 32.1 bits (72), Expect = 0.089
Identities = 27/176 (15%), Positives = 51/176 (28%), Gaps = 50/176 (28%)
Query: 13 FFFKNVRVEGELEILTRDRFED----LYN-----------REPLYCKIRAHLCHPSSRLF 57
F ++ E + + + LYN R Y K+R L R
Sbjct: 93 FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL--ELRPA 150
Query: 58 RFLFLH--------VRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPFWMASKRV-RV 108
+ + + L++ + + + KI FW+ K
Sbjct: 151 KNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMD-----FKI-------FWLNLKNCNSP 195
Query: 109 EGELEILTQDRFEDLYNR-EPLYCKIRAHLCHQDQATDWDEAKATH---DAIYDKC 160
E LE+L + L + +P + H + +A+ Y+ C
Sbjct: 196 ETVLEML-----QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246
Score = 26.7 bits (58), Expect = 5.3
Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 45/176 (25%)
Query: 20 VEGELEILT----RDRFEDL--YNREPLYCKIRAHLCHPSSRLFRFLFLHVRVEGELEIL 73
+E L +L R F+ L + P I P+ L ++ V + ++
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVF---PPSAHI------PTILLSL-IWFDVIKSDVMVVV 408
Query: 74 TRDRFEDLYNREPLYCKIRAHLCHPFWMASKRVRVEGELE----ILTQDRFEDLYNREPL 129
+ L ++P I + +V++E E I+ ++ + L
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIY----LELKVKLENEYALHRSIVDHYNIPKTFDSDDL 464
Query: 130 ---------YCKIRAHLCHQDQATDWD------------EAKATHDAIYDKCKRGV 164
Y I HL + + E K HD+ +
Sbjct: 465 IPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI 520
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.52
Identities = 33/229 (14%), Positives = 56/229 (24%), Gaps = 109/229 (47%)
Query: 14 FFKNVRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRL----------------- 56
FF +VR + +L F + +R + +P++ L
Sbjct: 292 FFVSVR--KAITVL----F---------FIGVRCYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 57 ---------FRFLFLHVR-------VEGELEI-L--TRDRF------EDLYNREPLYCKI 91
+ +V ++EI L + LY K
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKA 396
Query: 92 RAHLCH-----PFWMASKR-VRVEGE------------LEILTQDRFEDLYNRE------ 127
+A PF S+R ++ L + +DL
Sbjct: 397 KAPSGLDQSRIPF---SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAK 453
Query: 128 ----PLYC------------KIRAHLCHQDQAT----DWDEA---KATH 153
P+Y I + D W+ KATH
Sbjct: 454 DIQIPVYDTFDGSDLRVLSGSISERIV--DCIIRLPVKWETTTQFKATH 500
>2hhz_A Pyridoxamine 5'-phosphate oxidase-related; structural genomics,
joint center for structural genomics, J protein
structure initiative, PSI-2; 2.00A {Streptococcus suis}
Length = 150
Score = 28.0 bits (62), Expect = 1.1
Identities = 10/58 (17%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 8 YASVLFFFKN------VRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRLFRF 59
++ + VRVEG + D + ++ P Y I + ++F+
Sbjct: 62 RVAMTAISEEGYLIQVVRVEGTARPVENDYLKTVFADNPYYQHIYKDESSDTMQVFQI 119
>3o0p_A Sortase family protein; PILI assembly, PILI subunits, transferase
,hydrolas transferase, hydrolase; 1.30A {Streptococcus
agalactiae}
Length = 216
Score = 27.6 bits (61), Expect = 1.8
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 96 CHPFWMASKRVRVEGEL 112
C P + + R+ V G
Sbjct: 181 CTPIMVNTHRLLVRGHR 197
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase;
HET: MES; 2.14A {Streptococcus pneumoniae}
Length = 252
Score = 27.7 bits (61), Expect = 2.2
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 96 CHPFWMASKRVRVEGEL 112
C P +KR+ V E
Sbjct: 175 CDPIPTFNKRLLVNFER 191
>3g66_A Sortase C; pilus, transferase; HET: MES; 1.70A {Streptococcus
pneumoniae} PDB: 3g69_A*
Length = 212
Score = 27.2 bits (60), Expect = 2.2
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 96 CHPFWMASKRVRVEGEL 112
C P+ + S R+ V G+
Sbjct: 176 CTPYMINSHRLLVRGKR 192
>3rbj_A Sortase C1, sortase family protein; sortase fold, beta-barrel,
LID-mutant, PILI BIOG hydrolase; 2.30A {Streptococcus
agalactiae serogroup V} PDB: 3tb7_A 3rbi_A 3rbk_A 3tbe_A
Length = 230
Score = 27.3 bits (60), Expect = 2.7
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 96 CHPFWMASKRVRVEGEL 112
P+ + S R+ V G+
Sbjct: 195 ATPYMINSHRLLVRGKR 211
>1nrg_A Pyridoxine 5'-phosphate oxidase; PLP, FMN, oxidoreductase; HET: FMN
PLP; 1.95A {Homo sapiens} SCOP: b.45.1.1 PDB: 3hy8_A*
Length = 261
Score = 26.6 bits (59), Expect = 3.7
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 8 YASVLFFFKN----VRVEGELEILTRDRFEDLYNREPLYCKIRAHLCHPSSRLFRFLFLH 63
+AS++F+++ VRVEG ++ L + E ++ P +I A + H SS + +L
Sbjct: 126 FASLVFYWEPLNRQVRVEGPVKKLPEEEAECYFHSRPKSSQIGAVVSHQSSVIPDREYLR 185
Query: 64 VRVEGELEILTRDRFED 80
+ E ELE ++D
Sbjct: 186 KKNE-ELE----QLYQD 197
>1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET:
ADP; 2.90A {Escherichia coli} PDB: 1y4u_A
Length = 559
Score = 26.4 bits (59), Expect = 5.5
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 10/39 (25%)
Query: 62 LHVRVEGELEILT-----RDRFEDLYNREP-----LYCK 90
H RVEG+ E + D++NR+ LY +
Sbjct: 264 SHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQ 302
>2w1j_A Putative sortase, sortase C-1; pathogenicity, transferase; 1.24A
{Streptococcus pneumoniae} PDB: 2wts_A 3re9_A
Length = 212
Score = 26.1 bits (57), Expect = 5.6
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 96 CHPFWMASKRVRVEGEL 112
C P+ + + R+ V G
Sbjct: 177 CTPYMINTHRLLVRGHR 193
>2kw8_A LPXTG-SITE transpeptidase family protein; sortase, SRTA, protein
binding; NMR {Bacillus anthracis}
Length = 158
Score = 25.8 bits (57), Expect = 6.0
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 96 CHPFWMASKRVRVEGEL 112
C SKR V G+L
Sbjct: 135 CVSVKDNSKRYVVAGDL 151
>2xwg_A Sortase; hydrolase, fimbrial assembly; 2.40A {Actinomyces oris}
Length = 235
Score = 26.1 bits (57), Expect = 6.7
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 96 CHPFWMASKRVRVEGEL 112
C P+ + S R+ V GE
Sbjct: 213 CTPYGVNSHRLLVTGER 229
>2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A
{Escherichia coli} PDB: 2iop_A
Length = 624
Score = 26.0 bits (58), Expect = 7.2
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 10/39 (25%)
Query: 62 LHVRVEGELEILT-----RDRFEDLYNREP-----LYCK 90
H RVEG+ E + D++NR+ LY +
Sbjct: 264 SHNRVEGKQEYTSLLYIPSQAPWDMWNRDHKHGLKLYVQ 302
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.330 0.144 0.467
Gapped
Lambda K H
0.267 0.0568 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,796,633
Number of extensions: 158323
Number of successful extensions: 406
Number of sequences better than 10.0: 1
Number of HSP's gapped: 400
Number of HSP's successfully gapped: 26
Length of query: 172
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 85
Effective length of database: 4,272,666
Effective search space: 363176610
Effective search space used: 363176610
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 54 (24.9 bits)