RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy10276
         (172 letters)



>d2a9da2 d.176.1.1 (A:95-343) Sulfite oxidase, middle catalytic
           domain {Chicken (Gallus gallus) [TaxId: 9031]}
          Length = 249

 Score = 26.3 bits (57), Expect = 2.3
 Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 1/77 (1%)

Query: 91  IRAHLCHPFWMASK-RVRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQDQATDWDEA 149
            R HL  P    S  R+RV+G           +L +R P +       C  ++ ++    
Sbjct: 43  TRNHLPVPAVEPSSYRLRVDGPGGRTLSLSLAELRSRFPKHEVTATLQCAGNRRSEMSRV 102

Query: 150 KATHDAIYDKCKRGVDL 166
           +      +D        
Sbjct: 103 RPVKGLPWDIGAISTAR 119


>d3brja1 a.285.1.1 (A:6-172) Mannitol operon repressor MtlR {Vibrio
           parahaemolyticus [TaxId: 670]}
          Length = 167

 Score = 24.8 bits (54), Expect = 5.0
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 103 SKRVRVEGELEILTQDRFEDLYNREPLYCKIRAHLCHQDQATDWDEAKATHDAIYDKCKR 162
           S R+++   L +L  D + D+        K++ HL       D  + + T   I +  K+
Sbjct: 63  SVRLKLLFGLGVLPDDIYHDIE----DIIKLKNHLNS-----DASDYEFTDPNILEPIKK 113


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.144    0.467 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 705,731
Number of extensions: 32656
Number of successful extensions: 98
Number of sequences better than 10.0: 1
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 4
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 50 (23.2 bits)