BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10277
(305 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CWB|D Chain D, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3CWB|Q Chain Q, Chicken Cytochrome Bc1 Complex Inhibited By An Iodinated
Analogue Of The Polyketide Crocacin-d
pdb|3H1H|D Chain D, Cytochrome Bc1 Complex From Chicken
pdb|3H1H|Q Chain Q, Cytochrome Bc1 Complex From Chicken
pdb|3H1I|D Chain D, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1I|Q Chain Q, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|3H1J|D Chain D, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1J|Q Chain Q, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
pdb|3H1K|D Chain D, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1K|Q Chain Q, Chicken Cytochrome Bc1 Complex With Zn++ And An Iodinated
Derivative Of Kresoxim-Methyl Bound
pdb|3H1L|D Chain D, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3H1L|Q Chain Q, Chicken Cytochrome Bc1 Complex With Ascochlorin Bound At
Qo And Qi Sites
pdb|3L70|D Chain D, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L70|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Trifloxystrobin
Bound
pdb|3L71|D Chain D, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L71|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Azoxystrobin
Bound
pdb|3L72|D Chain D, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L72|Q Chain Q, Chicken Cytochrome Bc1 Complex With Kresoxym-I-Dimethyl
Bound
pdb|3L73|D Chain D, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L73|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Triazolone
Inhibitor
pdb|3L74|D Chain D, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L74|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Famoxadone Bound
pdb|3L75|D Chain D, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3L75|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Fenamidone Bound
pdb|3TGU|D Chain D, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
pdb|3TGU|Q Chain Q, Cytochrome Bc1 Complex From Chicken With Pfvs-Designed Moa
Inhibitor Bound
Length = 241
Score = 279 bits (714), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 143/275 (52%), Positives = 180/275 (65%), Gaps = 36/275 (13%)
Query: 26 GDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAE 85
G+LELHPP WSH G L + DH+S+RRG++VYK VC+ACHS ++ +RNL+GV+HTEAE
Sbjct: 1 GELELHPPAFPWSHGGPLSALDHSSVRRGFQVYKQVCSACHSMDYVAFRNLIGVTHTEAE 60
Query: 86 AKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMAR 145
AK AEE+ V+DGP+E GE+F RPGK+SD FP DLSYI AR
Sbjct: 61 AKALAEEVEVQDGPDENGELFMRPGKISDYFPKPYPNPEAARAANNGALPPDLSYIVNAR 120
Query: 146 HGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQAL 205
HG EDYVF LLTG Y DPPAGV +REGL++NPYF G AIGMA +
Sbjct: 121 HGGEDYVFSLLTG----------------YCDPPAGVVVREGLHYNPYFPGQAIGMAPPI 164
Query: 206 YNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXXXXX 265
YNEI+EY+DGTPAT SQ+AKDV TFL+W EPEHD RKRM +K +
Sbjct: 165 YNEILEYDDGTPATMSQIAKDVCTFLRWAAEPEHDQRKRMGLKMLLIS------------ 212
Query: 266 XXXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
+LT+ L+Y+KR+K+S LK+RK++Y+P
Sbjct: 213 --------ALLTSLLYYMKRHKWSVLKSRKMAYRP 239
>pdb|1BGY|D Chain D, Cytochrome Bc1 Complex From Bovine
pdb|1BGY|P Chain P, Cytochrome Bc1 Complex From Bovine
pdb|1BE3|D Chain D, Cytochrome Bc1 Complex From Bovine
pdb|1L0L|D Chain D, Structure Of Bovine Mitochondrial Cytochrome Bc1 Complex
With A Bound Fungicide Famoxadone
pdb|1L0N|D Chain D, Native Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex
pdb|1NTK|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1 In
Complex With Antimycin A1
pdb|1NTM|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
At 2.4 Angstrom
pdb|1NTZ|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1 Complex
Bound With Ubiquinone
pdb|1NU1|D Chain D, Crystal Structure Of Mitochondrial Cytochrome Bc1
Complexed With 2- Nonyl-4-Hydroxyquinoline N-Oxide
(Nqno)
pdb|1PP9|D Chain D, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PP9|Q Chain Q, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1PPJ|D Chain D, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1PPJ|Q Chain Q, Bovine Cytochrome Bc1 Complex With Stigmatellin And
Antimycin
pdb|1SQB|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Azoxystrobin
pdb|2A06|D Chain D, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|2A06|Q Chain Q, Bovine Cytochrome Bc1 Complex With Stigmatellin Bound
pdb|1SQV|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Uhdbt
pdb|1SQX|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Stigmatellin
A
pdb|1SQP|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Myxothiazol
pdb|1SQQ|D Chain D, Crystal Structure Analysis Of Bovine Bc1 With Methoxy
Acrylate Stilbene (Moas)
pdb|2FYU|D Chain D, Crystal Structure Of Bovine Heart Mitochondrial Bc1 With
Jg144 Inhibitor
pdb|2YBB|D Chain D, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|2YBB|DD Chain d, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
Length = 241
Score = 275 bits (703), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 143/274 (52%), Positives = 174/274 (63%), Gaps = 36/274 (13%)
Query: 27 DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEA 86
DLELHPP WSH GLL S DH SIRRG++VYK VC++CHS ++ YR+LVGV +TE EA
Sbjct: 2 DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEA 61
Query: 87 KREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMARH 146
K AEE+ V+DGPNE GEMF RPGKLSD FP DLSYI ARH
Sbjct: 62 KALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARH 121
Query: 147 GAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALY 206
G EDYVF LL TGY +PP GV +REGLYFNPYF G AIGMA +Y
Sbjct: 122 GGEDYVFSLL----------------TGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIY 165
Query: 207 NEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXXXXXX 266
NE++E++DGTPAT SQ+AKDV TFL+W EPEHD RKRM +K +
Sbjct: 166 NEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLM-------------- 211
Query: 267 XXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
M +L ++ +KR+K+S LK+RK++Y+P
Sbjct: 212 ------MGLLLPLVYAMKRHKWSVLKSRKLAYRP 239
>pdb|1BCC|D Chain D, Cytochrome Bc1 Complex From Chicken
pdb|3BCC|D Chain D, Stigmatellin And Antimycin Bound Cytochrome Bc1 Complex
From Chicken
pdb|2BCC|D Chain D, Stigmatellin-Bound Cytochrome Bc1 Complex From Chicken
Length = 241
Score = 275 bits (703), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 142/274 (51%), Positives = 174/274 (63%), Gaps = 36/274 (13%)
Query: 27 DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEA 86
DLELHPP WSH G L S DH SIRRG++VYK VC++CHS ++ YR+LVGV +TE EA
Sbjct: 2 DLELHPPSYPWSHRGPLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEA 61
Query: 87 KREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMARH 146
K AEE+ V+DGPNE GEMF RPGKLSD FP DLSYI ARH
Sbjct: 62 KALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARH 121
Query: 147 GAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALY 206
G EDYVF LL TGY +PP GV +REGLYFNPYF G AIGMA +Y
Sbjct: 122 GGEDYVFSLL----------------TGYCEPPTGVSVREGLYFNPYFPGQAIGMAPPIY 165
Query: 207 NEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXXXXXX 266
N+++E++DGTPAT SQ+AKDV TFL+W EPEHD RKRM +K +
Sbjct: 166 NDVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLM-------------- 211
Query: 267 XXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
M +L ++Y+KR+K+S LK+RK++Y+P
Sbjct: 212 ------MGLLVPLVYYMKRHKWSVLKSRKLAYRP 239
>pdb|1EZV|D Chain D, Structure Of The Yeast Cytochrome Bc1 Complex Co-
Crystallized With An Antibody Fv-Fragment
Length = 245
Score = 241 bits (615), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 122/278 (43%), Positives = 161/278 (57%), Gaps = 35/278 (12%)
Query: 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
+ A + LH P WSH+G ++FDHASIRRGY+VY+ VCAACHS + +R LVGVSHT
Sbjct: 1 MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60
Query: 83 EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYIT 142
E + AEE +D P+E+G KRPGKLSD P DLS I
Sbjct: 61 NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120
Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
ARHG DY+F LLTGY D +PPAGV + G +NPYF GG+I MA
Sbjct: 121 KARHGGCDYIFSLLTGYPD---------------EPPAGVALPPGSNYNPYFPGGSIAMA 165
Query: 203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXX 262
+ L+++++EYEDGTPAT SQ+AKDV+TFL WC EPEHD RKR+ +K +
Sbjct: 166 RVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVII---------- 215
Query: 263 XXXXXXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
++ L ++K++K++ +KTRK + P
Sbjct: 216 ----------LSSLYLLSIWVKKFKWAGIKTRKFVFNP 243
>pdb|1KB9|D Chain D, Yeast Cytochrome Bc1 Complex
pdb|1P84|D Chain D, Hdbt Inhibited Yeast Cytochrome Bc1 Complex
Length = 246
Score = 241 bits (615), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 122/278 (43%), Positives = 161/278 (57%), Gaps = 35/278 (12%)
Query: 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
+ A + LH P WSH+G ++FDHASIRRGY+VY+ VCAACHS + +R LVGVSHT
Sbjct: 1 MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60
Query: 83 EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYIT 142
E + AEE +D P+E+G KRPGKLSD P DLS I
Sbjct: 61 NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120
Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
ARHG DY+F LLTGY D +PPAGV + G +NPYF GG+I MA
Sbjct: 121 KARHGGCDYIFSLLTGYPD---------------EPPAGVALPPGSNYNPYFPGGSIAMA 165
Query: 203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXX 262
+ L+++++EYEDGTPAT SQ+AKDV+TFL WC EPEHD RKR+ +K +
Sbjct: 166 RVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVII---------- 215
Query: 263 XXXXXXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
++ L ++K++K++ +KTRK + P
Sbjct: 216 ----------LSSLYLLSIWVKKFKWAGIKTRKFVFNP 243
>pdb|1KYO|D Chain D, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|1KYO|O Chain O, Yeast Cytochrome Bc1 Complex With Bound Substrate
Cytochrome C
pdb|2IBZ|D Chain D, Yeast Cytochrome Bc1 Complex With Stigmatellin
pdb|3CX5|D Chain D, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CX5|O Chain O, Structure Of Complex Iii With Bound Cytochrome C In
Reduced State And Definition Of A Minimal Core Interface
For Electron Transfer.
pdb|3CXH|D Chain D, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer.
pdb|3CXH|O Chain O, Structure Of Yeast Complex Iii With Isoform-2 Cytochrome C
Bound And Definition Of A Minimal Core Interface For
Electron Transfer
Length = 248
Score = 241 bits (614), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 122/278 (43%), Positives = 161/278 (57%), Gaps = 35/278 (12%)
Query: 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
+ A + LH P WSH+G ++FDHASIRRGY+VY+ VCAACHS + +R LVGVSHT
Sbjct: 1 MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60
Query: 83 EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYIT 142
E + AEE +D P+E+G KRPGKLSD P DLS I
Sbjct: 61 NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120
Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
ARHG DY+F LLTGY D +PPAGV + G +NPYF GG+I MA
Sbjct: 121 KARHGGCDYIFSLLTGYPD---------------EPPAGVALPPGSNYNPYFPGGSIAMA 165
Query: 203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXX 262
+ L+++++EYEDGTPAT SQ+AKDV+TFL WC EPEHD RKR+ +K +
Sbjct: 166 RVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKTVII---------- 215
Query: 263 XXXXXXXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
++ L ++K++K++ +KTRK + P
Sbjct: 216 ----------LSSLYLLSIWVKKFKWAGIKTRKFVFNP 243
>pdb|2YIU|B Chain B, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
pdb|2YIU|E Chain E, X-Ray Structure Of The Dimeric Cytochrome Bc1 Complex From
The Soil Bacterium Paracoccus Denitrificans At 2.7
Angstrom Resolution
Length = 263
Score = 93.6 bits (231), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 103/238 (43%), Gaps = 37/238 (15%)
Query: 24 QAGD--LELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLV---G 78
+AGD H + +S G FD ++RG +VY VC+ACH R++ R L G
Sbjct: 18 EAGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLRYVPLRTLADEGG 77
Query: 79 VSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDL 138
E + + A + D E+ RP +D FP+ DL
Sbjct: 78 PQLPEDQVRAYAANFDITDPETEE----DRPRVPTDHFPTVSGEGMGP----------DL 123
Query: 139 SYITMARHGAEDYVFH---------LLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLY 189
S + AR G FH L G P +Y+ +LTGY D + LY
Sbjct: 124 SLMAKARAG-----FHGPYGTGLSQLFNGIGGP---EYIHAVLTGY-DGEEKEEAGAVLY 174
Query: 190 FNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAI 247
N F G I MA L ++ + YEDGTPAT Q+A DV+ FL W EP+ RK++
Sbjct: 175 HNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVGF 232
>pdb|1ZRT|D Chain D, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
pdb|1ZRT|Q Chain Q, Rhodobacter Capsulatus Cytochrome Bc1 Complex With
Stigmatellin Bound
Length = 258
Score = 92.4 bits (228), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 68/242 (28%), Positives = 104/242 (42%), Gaps = 36/242 (14%)
Query: 33 PHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEE 92
P +S G+ +D A +RRG++VY VC+ACH +F+ R L + + E
Sbjct: 5 PDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVREY 64
Query: 93 IMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMARHG----A 148
D +K +R K +D FP+ DLS + AR G A
Sbjct: 65 AAGLDTIIDKDSGEERDRKETDMFPTRVGDGMGP----------DLSVMAKARAGFSGPA 114
Query: 149 EDYVFHLLTGYMDPPAGDYVFHLLTGYM-DPPAGVQIREGLYFNPYFLGGAIG------- 200
+ L G P +Y+++ + G+ +P + +G Y+N F G +
Sbjct: 115 GSGMNQLFKGMGGP---EYIYNYVIGFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDAA 171
Query: 201 -----------MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKC 249
M L ++ + YEDGTPAT Q+A+DVS FL W EP+ RK+M +
Sbjct: 172 GVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVA 231
Query: 250 MT 251
M
Sbjct: 232 MV 233
>pdb|2FYN|B Chain B, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|E Chain E, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|H Chain H, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|K Chain K, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|N Chain N, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2FYN|Q Chain Q, Crystal Structure Analysis Of The Double Mutant
Rhodobacter Sphaeroides Bc1 Complex
pdb|2QJY|B Chain B, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|E Chain E, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|H Chain H, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|K Chain K, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|N Chain N, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
pdb|2QJY|Q Chain Q, Crystal Structure Of Rhodobacter Sphaeroides Double Mutant
With Stigmatellin And Uq2
Length = 269
Score = 87.4 bits (215), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 77/293 (26%), Positives = 120/293 (40%), Gaps = 66/293 (22%)
Query: 31 HPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLV---GVSHTEAEAK 87
H + +S G +FD ++RG +VY VCAACH +F+ R+L G E + +
Sbjct: 5 HVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVR 64
Query: 88 REAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMARHG 147
A + V D E GE R GK +D FP DLS + AR G
Sbjct: 65 AYATQFTVTD--EETGE--DREGKPTDHFPH-----------SALENAPDLSLMAKARAG 109
Query: 148 AED----YVFHLLTGYMDPPAGDYVFHLLTGY-MDPPAGVQIRE--GLYFNPYFLGGA-- 198
+ L G P +Y++ +LTG+ +PP + E G Y+N F G+
Sbjct: 110 FHGPMGTGISQLFNGIGGP---EYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVP 166
Query: 199 ----------------IGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTR 242
I M L ++++EY DG A+ +A+DVS FL W EP+ R
Sbjct: 167 DTCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMAR 226
Query: 243 KRMAIKCMTTXXXXXXXXXXXXXXXXXXXXMTILTAALFYLKRYKFSSLKTRK 295
K+ + +T+L+ L+ + ++ +K +K
Sbjct: 227 KQAGFTAVM--------------------FLTVLSVLLYLTNKRLWAGVKGKK 259
>pdb|2QJK|B Chain B, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|E Chain E, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|H Chain H, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|K Chain K, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|N Chain N, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJK|Q Chain Q, Crystal Structure Analysis Of Mutant Rhodobacter
Sphaeroides Bc1 With Stigmatellin And Antimycin
pdb|2QJP|B Chain B, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|E Chain E, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|H Chain H, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
pdb|2QJP|K Chain K, Crystal Structure Of Wild Type Rhodobacter Sphaeroides
With Stigmatellin And Antimycin Inhibited
Length = 256
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 72/248 (29%), Positives = 106/248 (42%), Gaps = 46/248 (18%)
Query: 31 HPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLV---GVSHTEAEAK 87
H + +S G +FD ++RG +VY VCAACH +F+ R+L G E + +
Sbjct: 5 HVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVR 64
Query: 88 REAEEIMVEDGPNEKGEMFKRPGKLSDTFPSXXXXXXXXXXXXXXXXXXDLSYITMARHG 147
A + V D E GE R GK +D FP DLS + AR G
Sbjct: 65 AYATQFTVTD--EETGE--DREGKPTDHFPH-----------SALENAPDLSLMAKARAG 109
Query: 148 AED----YVFHLLTGYMDPPAGDYVFHLLTGY-MDPPAGVQIRE--GLYFNPYFLGGA-- 198
+ L G P +Y++ +LTG+ +PP + E G Y+N F G+
Sbjct: 110 FHGPMGTGISQLFNGIGGP---EYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVP 166
Query: 199 ----------------IGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTR 242
I M L ++++EY DG A+ +A+DVS FL W EP+ R
Sbjct: 167 DTCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMAR 226
Query: 243 KRMAIKCM 250
K+ +
Sbjct: 227 KQAGFTAV 234
>pdb|1QCR|D Chain D, Crystal Structure Of Bovine Mitochondrial Cytochrome Bc1
Complex, Alpha Carbon Atoms Only
Length = 75
Score = 72.0 bits (175), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 58/93 (62%), Gaps = 20/93 (21%)
Query: 208 EIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTXXXXXXXXXXXXXXX 267
E++E++DGTPAT SQ+AKDV TFL+W EPEHD RKRM +K +
Sbjct: 1 EVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLM--------------- 45
Query: 268 XXXXXMTILTAALFYLKRYKFSSLKTRKISYKP 300
M +L ++ +KR+K+S LK+RK++Y+P
Sbjct: 46 -----MGLLLPLVYAMKRHKWSVLKSRKLAYRP 73
>pdb|3DMQ|A Chain A, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
pdb|3DMQ|B Chain B, Crystal Structure Of Rapa, A Swi2SNF2 PROTEIN THAT
Recycles Rna Polymerase During Transcription
Length = 968
Score = 28.9 bits (63), Expect = 3.9, Method: Composition-based stats.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 11/47 (23%)
Query: 24 QAGDLELHPPHL---------KWSHSGLLDSFDHASIRRGYEVYKNV 61
QA D+++H P+L +W H G LD+F+H + G +Y +V
Sbjct: 602 QAHDIQIHVPYLEKTAQSVLVRWYHEG-LDAFEH-TCPTGRTIYDSV 646
>pdb|2HXT|A Chain A, Crystal Structure Of L-Fuconate Dehydratase From
Xanthomonas Campestris Liganded With Mg++ And
D-Erythronohydroxamate
Length = 441
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 153 FHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEY 212
F +TG M+ A ++V HL ++DP V+I+ G Y P G + M A E Y
Sbjct: 369 FVAITGKMEDRAIEFVDHLHQHFLDP---VRIQHGRYLAPEVPGFSAEMHPASIAE-FSY 424
Query: 213 EDG 215
DG
Sbjct: 425 PDG 427
>pdb|2HXU|A Chain A, Crystal Structure Of K220a Mutant Of L-Fuconate
Dehydratase From Xanthomonas Campestris Liganded With
Mg++ And L-Fuconate
Length = 441
Score = 28.5 bits (62), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 153 FHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEY 212
F +TG M+ A ++V HL ++DP V+I+ G Y P G + M A E Y
Sbjct: 369 FVAITGKMEDRAIEFVDHLHQHFLDP---VRIQHGRYLAPEVPGFSAEMHPASIAE-FSY 424
Query: 213 EDG 215
DG
Sbjct: 425 PDG 427
>pdb|2HNE|A Chain A, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|B Chain B, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|C Chain C, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
pdb|2HNE|D Chain D, Crystal Structure Of L-fuconate Dehydratase From
Xanthomonas Campestris Pv. Campestris Str. Atcc 33913
Length = 436
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 4/63 (6%)
Query: 153 FHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEY 212
F +TG M+ A ++V HL ++DP V+I+ G Y P G + M A E Y
Sbjct: 369 FVAITGKMEDRAIEFVDHLHQHFLDP---VRIQHGRYLAPEVPGFSAEMHPASIAE-FSY 424
Query: 213 EDG 215
DG
Sbjct: 425 PDG 427
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,961,496
Number of Sequences: 62578
Number of extensions: 294721
Number of successful extensions: 577
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 541
Number of HSP's gapped (non-prelim): 15
length of query: 305
length of database: 14,973,337
effective HSP length: 98
effective length of query: 207
effective length of database: 8,840,693
effective search space: 1830023451
effective search space used: 1830023451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.3 bits)