BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10277
(305 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P00125|CY1_BOVIN Cytochrome c1, heme protein, mitochondrial OS=Bos taurus GN=CYC1
PE=1 SV=2
Length = 325
Score = 320 bits (820), Expect = 8e-87, Method: Compositional matrix adjust.
Identities = 162/280 (57%), Positives = 193/280 (68%), Gaps = 36/280 (12%)
Query: 21 SYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
S V A DLELHPP WSH GLL S DH SIRRG++VYK VC++CHS ++ YR+LVGV
Sbjct: 80 SAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVC 139
Query: 81 HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSY 140
+TE EAK AEE+ V+DGPNE GEMF RPGKLSD FP PYPN EAARAANNGA PPDLSY
Sbjct: 140 YTEDEAKALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSY 199
Query: 141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIG 200
I ARHG EDYVF LL TGY +PP GV +REGLYFNPYF G AIG
Sbjct: 200 IVRARHGGEDYVFSLL----------------TGYCEPPTGVSLREGLYFNPYFPGQAIG 243
Query: 201 MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGA 260
MA +YNE++E++DGTPAT SQ+AKDV TFL+W EPEHD RKRM +K +
Sbjct: 244 MAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKMLLM-------- 295
Query: 261 GALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
M +L ++ +KR+K+S LK+RK++Y+P
Sbjct: 296 ------------MGLLLPLVYAMKRHKWSVLKSRKLAYRP 323
>sp|P08574|CY1_HUMAN Cytochrome c1, heme protein, mitochondrial OS=Homo sapiens GN=CYC1
PE=1 SV=3
Length = 325
Score = 314 bits (804), Expect = 5e-85, Method: Compositional matrix adjust.
Identities = 159/280 (56%), Positives = 189/280 (67%), Gaps = 36/280 (12%)
Query: 21 SYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
S V A DLELHPP WSH GLL S DH SIRRG++VYK VCA+CHS F+ YR+LVGV
Sbjct: 80 SAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCASCHSMDFVAYRHLVGVC 139
Query: 81 HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSY 140
+TE EAK A E+ V+DGPNE GEMF RPGKL D FP PYPN EAARAANNGA PPDLSY
Sbjct: 140 YTEDEAKELAAEVEVQDGPNEDGEMFMRPGKLFDYFPKPYPNSEAARAANNGALPPDLSY 199
Query: 141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIG 200
I ARHG EDYVF LL TGY +PP GV +REGLYFNPYF G AI
Sbjct: 200 IVRARHGGEDYVFSLL----------------TGYCEPPTGVSLREGLYFNPYFPGQAIA 243
Query: 201 MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGA 260
MA +Y +++E++DGTPAT SQ+AKDV TFL+W EPEHD RKRM +K +
Sbjct: 244 MAPPIYTDVLEFDDGTPATMSQIAKDVCTFLRWASEPEHDHRKRMGLKMLMM-------- 295
Query: 261 GALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
M +L ++ +KR+K+S LK+RK++Y+P
Sbjct: 296 ------------MALLVPLVYTIKRHKWSVLKSRKLAYRP 323
>sp|Q9D0M3|CY1_MOUSE Cytochrome c1, heme protein, mitochondrial OS=Mus musculus GN=Cyc1
PE=1 SV=1
Length = 325
Score = 305 bits (780), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 161/280 (57%), Positives = 192/280 (68%), Gaps = 36/280 (12%)
Query: 21 SYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
S V A DLELHPP WSH GLL S DH SIRRG++VYK VC++CHS ++ YR+LVGV
Sbjct: 80 SAVSASDLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVC 139
Query: 81 HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSY 140
+TE EAK AEE+ V+DGPN+ GEMF RPGKLSD FP PYPN EAARAANNGA PPDLSY
Sbjct: 140 YTEEEAKALAEEVEVQDGPNDDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSY 199
Query: 141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIG 200
I ARHG EDYVF LL TGY +PP GV +REGLYFNPYF G AIG
Sbjct: 200 IVRARHGGEDYVFSLL----------------TGYCEPPTGVSLREGLYFNPYFPGQAIG 243
Query: 201 MAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGA 260
MA +Y E++EY+DGTPAT SQ+AKDV+TFL+W EPEHD RKRM +K +
Sbjct: 244 MAPPIYTEVLEYDDGTPATMSQVAKDVATFLRWASEPEHDHRKRMGLKMLLM-------- 295
Query: 261 GALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
M +L + +KR+K+S LK+RK++Y+P
Sbjct: 296 ------------MGLLLPLTYAMKRHKWSVLKSRKLAYRP 323
>sp|P07143|CY1_YEAST Cytochrome c1, heme protein, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=CYT1 PE=1
SV=1
Length = 309
Score = 293 bits (750), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 151/304 (49%), Positives = 193/304 (63%), Gaps = 39/304 (12%)
Query: 1 MTTLGVLAGG--AGALLYA--LESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYE 56
+ T GV A G A LLYA L + + A + LH P WSH+G ++FDHASIRRGY+
Sbjct: 36 LVTAGVAAAGITASTLLYADSLTAEAMTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQ 95
Query: 57 VYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTF 116
VY+ VCAACHS + +R LVGVSHT E + AEE +D P+E+G KRPGKLSD
Sbjct: 96 VYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYI 155
Query: 117 PSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYM 176
P PYPNE+AARAAN GA PPDLS I ARHG DY+F LLTGY D
Sbjct: 156 PGPYPNEQAARAANQGALPPDLSLIVKARHGGCDYIFSLLTGYPD--------------- 200
Query: 177 DPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGE 236
+PPAGV + G +NPYF GG+I MA+ L+++++EYEDGTPAT SQ+AKDV+TFL WC E
Sbjct: 201 EPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAE 260
Query: 237 PEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKI 296
PEHD RKR+ +K + L L L++I ++K++K++ +KTRK
Sbjct: 261 PEHDERKRLGLKTVIILSSLY--------------LLSI------WVKKFKWAGIKTRKF 300
Query: 297 SYKP 300
+ P
Sbjct: 301 VFNP 304
>sp|Q00988|CY1_KLULA Cytochrome c1, heme protein, mitochondrial OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CYT1 PE=3 SV=1
Length = 292
Score = 290 bits (742), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 146/300 (48%), Positives = 193/300 (64%), Gaps = 37/300 (12%)
Query: 6 VLAGGAGALLYA--LESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCA 63
V+ GA +LYA L + + A + LH P WSH+G L++FDH+SIRRGY+VY+ VCA
Sbjct: 28 VVGIGASTMLYADSLTADAMTAAEHGLHAPGYGWSHNGPLETFDHSSIRRGYQVYREVCA 87
Query: 64 ACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNE 123
ACHS + +R +VGVSHT AE + AEE +D P+++G KRPGKL+D P PYPNE
Sbjct: 88 ACHSLDRVAWRTMVGVSHTNAEVRAMAEEFEYDDEPDDQGNPKKRPGKLADYVPGPYPNE 147
Query: 124 EAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQ 183
+AARAAN GA PPDLS I ARHG DY+F LLTGY + +PPAGV
Sbjct: 148 QAARAANQGALPPDLSLIVKARHGGPDYIFALLTGYPE---------------EPPAGVV 192
Query: 184 IREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRK 243
+ G +NPYF GG+I M + L+++++EYEDGTPAT SQ+AKDV+TFL WC EPEHD RK
Sbjct: 193 LPPGANYNPYFPGGSIAMGRVLFDDLVEYEDGTPATTSQMAKDVTTFLHWCSEPEHDERK 252
Query: 244 RMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSK 303
R+ +K M L + LY L ++K++K++S+K+RKI + P K
Sbjct: 253 RLGLKAMIVL--------SSLYLLS------------VWVKKFKWASIKSRKIVFNPPKK 292
>sp|P29610|CY12_SOLTU Cytochrome c1-2, heme protein, mitochondrial (Fragment) OS=Solanum
tuberosum GN=CYCL PE=1 SV=1
Length = 260
Score = 277 bits (709), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 146/289 (50%), Positives = 184/289 (63%), Gaps = 37/289 (12%)
Query: 8 AGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHS 67
AG +G L +A +S +A + L P W H+G+L S+DHASIRRG++VY+ VCA+CHS
Sbjct: 3 AGVSGLLGFATVASADEA-EHGLECPSYPWPHAGILSSYDHASIRRGHQVYQQVCASCHS 61
Query: 68 ARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAAR 127
+ YR+LVGV++TE E K A EI VEDGPN++GEMF RPGKLSD FP PYPNE AAR
Sbjct: 62 MSLVSYRDLVGVAYTEEEVKAMAAEIEVEDGPNDEGEMFTRPGKLSDRFPQPYPNEAAAR 121
Query: 128 AANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREG 187
AN GAYPPDLS IT ARH ++YVF LLT Y DPPAGV IREG
Sbjct: 122 FANGGAYPPDLSLITKARHNGQNYVFALLT----------------AYRDPPAGVSIREG 165
Query: 188 LYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAI 247
L++NPYF GGAI M + L + +EYEDG PAT++Q+ KDV +FL W EPE + RK M
Sbjct: 166 LHYNPYFPGGAIAMPKMLNDGAVEYEDGVPATEAQMGKDVVSFLTWAAEPEMEERKLMGF 225
Query: 248 KCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKI 296
K + L + +L AA Y +R ++S LK+RK+
Sbjct: 226 KWIFVLS------------------LALLQAA--YYRRLRWSVLKSRKL 254
>sp|P25076|CY11_SOLTU Cytochrome c1-1, heme protein, mitochondrial OS=Solanum tuberosum
GN=CYCL PE=2 SV=1
Length = 320
Score = 275 bits (702), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 143/294 (48%), Positives = 178/294 (60%), Gaps = 36/294 (12%)
Query: 3 TLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVC 62
L + G LL +Y + L P+ W H G+L S+DHASIRRG++VY+ VC
Sbjct: 57 ALAAIGAGVSGLLSFATIAYSDEAEHGLECPNYPWPHEGILSSYDHASIRRGHQVYQQVC 116
Query: 63 AACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPN 122
A+CHS I YR+LVGV++TE E K A EI V DGPN++GEMF RPGKLSD FP PY N
Sbjct: 117 ASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYAN 176
Query: 123 EEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGV 182
E AAR AN GAYPPDLS IT ARH ++YVF LLT Y DPPAGV
Sbjct: 177 EAAARFANGGAYPPDLSLITKARHNGQNYVFALLT----------------AYRDPPAGV 220
Query: 183 QIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTR 242
IREGL++NPYF GGAI M + L + +EYEDG PAT++Q+ KDV +FL W EPE + R
Sbjct: 221 SIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMGKDVVSFLSWAAEPEMEER 280
Query: 243 KRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKI 296
K M K + L + +L AA Y +R ++S LK+RK+
Sbjct: 281 KLMGFKWIFVLS------------------LALLQAA--YYRRLRWSVLKSRKL 314
>sp|O59680|CY1_SCHPO Cytochrome c1, heme protein, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=cyt1 PE=3 SV=1
Length = 307
Score = 273 bits (698), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/302 (45%), Positives = 186/302 (61%), Gaps = 39/302 (12%)
Query: 1 MTTLGVLAGGAGALLYALESSYVQAGDLE---LHPPHLKWSHSGLLDSFDHASIRRGYEV 57
+ + +L+ G AL Y + + AG + LH W S +L FDHAS+RRG++V
Sbjct: 38 LVSSSLLSVGMIALYYNVYGPSLSAGTPKEEGLHFIQHDWPQSKVLSGFDHASLRRGFQV 97
Query: 58 YKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFP 117
Y+ VC+ACHS I +R+LVGV+HT EAK+ A E+ EDGP+++G MFKRPGKLSD P
Sbjct: 98 YREVCSACHSLNLIAWRHLVGVTHTADEAKQMASEVEYEDGPDDEGNMFKRPGKLSDFLP 157
Query: 118 SPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMD 177
PYPN EAARA+NNGA PPDLS + RHG +DY++ LLT GY +
Sbjct: 158 PPYPNVEAARASNNGAAPPDLSCVVRGRHGGQDYIYSLLT----------------GYTE 201
Query: 178 PPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEP 237
PPAGV++ +G+ FNP+F G I MA+ L+++ +E+EDGTPAT +Q AKDV FL W EP
Sbjct: 202 PPAGVEVPDGMNFNPFFPGTQIAMARPLFDDAVEFEDGTPATTAQAAKDVVNFLHWASEP 261
Query: 238 EHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKIS 297
E D RK+M + +T L TILTA + KR+K++ +K RKI
Sbjct: 262 ELDIRKKMGFQVITVL--------------------TILTALSMWYKRFKWTPIKNRKIF 301
Query: 298 YK 299
Y+
Sbjct: 302 YQ 303
>sp|P07142|CY1_NEUCR Cytochrome c1, heme protein, mitochondrial OS=Neurospora crassa
(strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257
/ FGSC 987) GN=cyt-1 PE=2 SV=1
Length = 332
Score = 254 bits (649), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 137/286 (47%), Positives = 169/286 (59%), Gaps = 36/286 (12%)
Query: 15 LYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYR 74
LY S+ A + LH W H L +FDH ++RRG++VY+ VCA+CHS + YR
Sbjct: 64 LYGFASAMTPAEE-GLHATKYPWVHEQWLKTFDHQALRRGFQVYREVCASCHSLSRVPYR 122
Query: 75 NLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAY 134
LVG T EAK AEE + PN++GE+ KRPGKLSD P PY N+EAAR ANNGA
Sbjct: 123 ALVGTILTVDEAKALAEENEYDTEPNDQGEIEKRPGKLSDYLPDPYKNDEAARFANNGAL 182
Query: 135 PPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYF 194
PPDLS I ARHG DY+F LLTGY D +PPAG + GL FNPYF
Sbjct: 183 PPDLSLIVKARHGGCDYIFSLLTGYPD---------------EPPAGASVGAGLNFNPYF 227
Query: 195 LGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLG 254
G I MA+ LY+ +++YEDGTPA+ SQ+AKDV FL W EPE D RKRM +K +
Sbjct: 228 PGTGIAMARVLYDGLVDYEDGTPASTSQMAKDVVEFLNWAAEPEMDDRKRMGMKVLVVTS 287
Query: 255 VLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
V L+AL Y+KRYK++ LK+RKI Y P
Sbjct: 288 V--------LFALSV------------YVKRYKWAWLKSRKIVYDP 313
>sp|Q54D07|CY1_DICDI Cytochrome c1, heme protein, mitochondrial OS=Dictyostelium
discoideum GN=cyc1 PE=3 SV=1
Length = 275
Score = 246 bits (629), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 131/299 (43%), Positives = 175/299 (58%), Gaps = 37/299 (12%)
Query: 1 MTTLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKN 60
++ L +++G G S+ + + D + P W H S+DHA+IRRG++VY
Sbjct: 13 LSKLAIVSGVVGTATAITTSTTLLSDDF-VQPTSYPWEHRFPWQSYDHAAIRRGHQVYTQ 71
Query: 61 VCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPY 120
VC+ CHS I YR+L V++T E K A + V DGP+ +G+MF+R G+++D P PY
Sbjct: 72 VCSTCHSLNLISYRHLANVAYTPEELKAMAADTTVMDGPDSEGDMFERKGQVTDFHPKPY 131
Query: 121 PNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPA 180
PN AAR ANNGA PPDLS + AR EDYVF LLT GY +PPA
Sbjct: 132 PNSNAARFANNGALPPDLSLVIKARGAHEDYVFSLLT----------------GYCEPPA 175
Query: 181 GVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHD 240
GV++ G YFNPYF G I MA L + ++EY+DGT + SQ+AKDVSTFL W EPEHD
Sbjct: 176 GVRVVGGQYFNPYFPGTKIAMAPPLADGMVEYDDGTDNSMSQMAKDVSTFLCWASEPEHD 235
Query: 241 TRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYK 299
RK++ +K + LGV +I+ LFY KR K+S +KTRKIS+K
Sbjct: 236 DRKKLGMKVL--LGV------------------SIIALPLFYWKRLKWSVIKTRKISFK 274
>sp|P20114|CY1_EUGGR Cytochrome c1, heme protein OS=Euglena gracilis PE=1 SV=1
Length = 243
Score = 216 bits (549), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/273 (42%), Positives = 149/273 (54%), Gaps = 36/273 (13%)
Query: 28 LELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAK 87
++ HPP L W H D S+RRG EVY+ V A CHS FI YR+ E E K
Sbjct: 2 VDSHPPALPWPHFQWFQGLDWRSVRRGKEVYEQVFAPCHSLSFIKYRHFEAFMSKE-EVK 60
Query: 88 REAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHG 147
A V+D P+EKGE KRPGK DT PY NE+ AR ANNGA PPDLS IT ARHG
Sbjct: 61 NMAASFEVDDDPDEKGEARKRPGKRFDTVVQPYKNEQEARYANNGALPPDLSVITNARHG 120
Query: 148 AEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYN 207
DY++ LLTGY P P GVQ+ ++NPYF GG IGM L +
Sbjct: 121 GVDYIYALLTGYGRP---------------VPGGVQLSTTQWYNPYFHGGIIGMPPPLTD 165
Query: 208 EIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYAL 267
++IEYEDGTPA+ Q+AKDV+ FL+WC P D RK + K + TL V+A +G
Sbjct: 166 DMIEYEDGTPASVPQMAKDVTCFLEWCSNPWWDERKLLGYKTIATLAVIAVSSG------ 219
Query: 268 QAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
Y R+ ++R+++++P
Sbjct: 220 --------------YYNRFLSGLWRSRRLAFRP 238
>sp|P51131|CYBC_BRAJA Cytochrome b/c1 OS=Bradyrhizobium japonicum (strain USDA 110)
GN=fbcH PE=1 SV=1
Length = 687
Score = 192 bits (489), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/234 (45%), Positives = 147/234 (62%), Gaps = 8/234 (3%)
Query: 32 PPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLV---GVSHTEAEAKR 88
PP KWS +G FD +++RG +VYK VCA+CH +I +RNL G S++ A+
Sbjct: 441 PPGNKWSFAGPFGKFDRGALQRGLKVYKEVCASCHGLSYIAFRNLAEAGGPSYSVAQVAA 500
Query: 89 EAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMAR--- 145
A + ++DGPN+ G+MF+RPG+ +D FPSP+PNE+AARAAN GA PPDLS IT AR
Sbjct: 501 FASDYKIKDGPNDAGDMFERPGRPADYFPSPFPNEQAARAANGGAAPPDLSLITKARSYG 560
Query: 146 HGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDP-PAGVQIREGLYFNPYFLGGAIGMAQA 204
G ++F T Y + DYV +L G+ + P GV I EG Y+N YF G AI M +
Sbjct: 561 RGFPWFIFDFFTQYQE-QGPDYVSAVLQGFEEKVPEGVTIPEGSYYNKYFPGHAIKMPKP 619
Query: 205 LYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAG 258
L + + Y+DG+PAT +Q +KDV+TFL W EP + RKR+ + L + AG
Sbjct: 620 LSDGQVTYDDGSPATVAQYSKDVTTFLMWTAEPHMEARKRLGFQVFVFLIIFAG 673
>sp|P23135|CY1_RHORU Cytochrome c1 OS=Rhodospirillum rubrum GN=petC PE=1 SV=1
Length = 272
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 103/269 (38%), Positives = 148/269 (55%), Gaps = 7/269 (2%)
Query: 1 MTTLGVLAGGAGALLYALE-SSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYK 59
MTT+ A A ++ A+ ++ G + LH WS G+ +D ++RG++V+
Sbjct: 1 MTTIVKRALVAAGMVLAIGGAAQANEGGVSLH--KQDWSWKGIFGRYDQPQLQRGFQVFH 58
Query: 60 NVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSP 119
VC+ CH + + YRNL + +E K A E GP++ G+MF RPG +D PSP
Sbjct: 59 EVCSTCHGMKRVAYRNLSALGFSEDGIKELAAEKEFPAGPDDNGDMFTRPGTPADHIPSP 118
Query: 120 YPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPP 179
+ N++AA AAN GA PPDLS + AR G +Y++ LL GY G+ + +
Sbjct: 119 FANDKAAAAANGGAAPPDLSLLAKARPGGPNYIYSLLEGYASDSPGEPAEWWVKQQQEKG 178
Query: 180 AGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEH 239
V E YFN YF G AI M L +++I YEDGT AT+ Q+A+DV +L W EPE
Sbjct: 179 LEVAFNEAKYFNDYFPGHAISMPPPLMDDLITYEDGTAATKDQMAQDVVAYLNWAAEPEL 238
Query: 240 DTRKRMAIKCMTTLGVLAGGAGALLYALQ 268
D RK + +K + LGVL A+L AL+
Sbjct: 239 DARKSLGLKVLLFLGVLT----AMLLALK 263
>sp|P81379|CY1_RHOVI Cytochrome c1 OS=Rhodopseudomonas viridis GN=petC PE=4 SV=1
Length = 282
Score = 168 bits (425), Expect = 5e-41, Method: Compositional matrix adjust.
Identities = 97/255 (38%), Positives = 138/255 (54%), Gaps = 11/255 (4%)
Query: 13 ALLYALESSYVQAGDLELHPPHLK-WSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFI 71
AL++ L ++ V A PHL+ WS +G +D A +RRG++V++NVC +CH+
Sbjct: 12 ALVFGLAAASVPAQASGGDTPHLQSWSFAGPFGQYDKAQLRRGFQVFQNVCVSCHTLENG 71
Query: 72 CYRNLVGVSH-----TEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAA 126
+RNL + E + + V+D N+KG+ +R KL D PS Y NE AA
Sbjct: 72 GFRNLPSRAAPNWPLDEVRQLAASWPVQVKDI-NDKGDPMQRAPKLPDRIPSQYANEAAA 130
Query: 127 RAANNGAYPPDLSYITMAR---HGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQ 183
R +NGA PPDLS I AR G +V + T Y + DY+ LL GY DPP +
Sbjct: 131 RIIHNGAVPPDLSVIAKARTFQRGFPWWVTDIFTQYNEN-GVDYIVALLNGYEDPPERFK 189
Query: 184 IREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRK 243
+ +G ++N YF G IGM + + ++ Y DGTP TQ Q +KDV+ FL W EP D RK
Sbjct: 190 VPDGSFYNKYFPGHIIGMTPPIADGLVTYGDGTPETQLQYSKDVAAFLMWAAEPTLDVRK 249
Query: 244 RMAIKCMTTLGVLAG 258
R+ + L + G
Sbjct: 250 RIGWWVLGFLVIFTG 264
>sp|P0CY49|CY1_RHOCA Cytochrome c1 OS=Rhodobacter capsulatus GN=petC PE=1 SV=1
Length = 280
Score = 104 bits (259), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 71/245 (28%), Positives = 113/245 (46%), Gaps = 37/245 (15%)
Query: 37 WSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVE 96
+S G+ FD A +RRG++VY VC+ CH +F+ R L + + E
Sbjct: 30 FSFEGIFGKFDQAQLRRGFQVYSEVCSTCHGMKFVPIRTLSDDGGPQLDPTFVREYAAGL 89
Query: 97 DGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHG----AEDYV 152
D +K +R K +D FP+ R + PDLS + AR G A +
Sbjct: 90 DTIIDKDSGEERDRKETDMFPT--------RVGDGMG--PDLSVMAKARAGFSGPAGSGM 139
Query: 153 FHLLTGYMDPPAGDYVFHLLTGY--MDPPAGVQIREGLYFNPYFLGGAI----------- 199
L G P +Y++ +TG+ +P + +G Y+N F G +
Sbjct: 140 NQLFKGIGGP---EYIYRYVTGFPEENPACAPEGIDGYYYNEVFQVGGVPDTCKDAAGIK 196
Query: 200 -------GMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTT 252
M AL+++++ YEDGTPAT Q+ +DV++FL W EP+ RK+M + +
Sbjct: 197 TTHGSWAQMPPALFDDLVTYEDGTPATVDQMGQDVASFLMWAAEPKLVARKQMGLVAVVM 256
Query: 253 LGVLA 257
LG+L+
Sbjct: 257 LGLLS 261
>sp|D5ANZ4|CY1_RHOCB Cytochrome c1 OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC
16581 / SB1003) GN=petC PE=3 SV=1
Length = 279
Score = 102 bits (254), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 73/248 (29%), Positives = 112/248 (45%), Gaps = 36/248 (14%)
Query: 33 PHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEE 92
P +S G+ +D A +RRG++VY VC+ACH +F+ R L + + E
Sbjct: 26 PDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVREY 85
Query: 93 IMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHG----A 148
D +K +R K +D FP+ R + PDLS + AR G A
Sbjct: 86 AAGLDTIIDKDSGEERDRKETDMFPT--------RVGDGMG--PDLSVMAKARAGFSGPA 135
Query: 149 EDYVFHLLTGYMDPPAGDYVFHLLTGYM-DPPAGVQIREGLYFNPYFLGGAI-------- 199
+ L G P +Y+++ + G+ +P + +G Y+N F G +
Sbjct: 136 GSGMNQLFKGMGGP---EYIYNYVIGFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDAA 192
Query: 200 ----------GMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKC 249
M L ++ + YEDGTPAT Q+A+DVS FL W EP+ RK+M +
Sbjct: 193 GVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVA 252
Query: 250 MTTLGVLA 257
M LG+L+
Sbjct: 253 MVMLGLLS 260
>sp|P13627|CY1_PARDE Cytochrome c1 OS=Paracoccus denitrificans GN=petC PE=1 SV=1
Length = 450
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 85/259 (32%), Positives = 115/259 (44%), Gaps = 47/259 (18%)
Query: 24 QAGD--LELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLV---G 78
+AGD H + +S G FD ++RG +VY VC+ACH R++ R L G
Sbjct: 205 EAGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLRYVPLRTLADEGG 264
Query: 79 VSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDL 138
E + + A + D E+ RP +D FP+ + PDL
Sbjct: 265 PQLPEDQVRAYAANFDITDPETEE----DRPRVPTDHFPT----------VSGEGMGPDL 310
Query: 139 SYITMARHGAEDYVFH---------LLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREG-- 187
S + AR G FH L G P +Y+ +LTGY G + E
Sbjct: 311 SLMAKARAG-----FHGPYGTGLSQLFNGIGGP---EYIHAVLTGY----DGEEKEEAGA 358
Query: 188 -LYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMA 246
LY N F G I MA L ++ + YEDGTPAT Q+A DV+ FL W EP+ RK++
Sbjct: 359 VLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDRKQVG 418
Query: 247 IKCMTTLGVLAGGAGALLY 265
+ L VLA ALLY
Sbjct: 419 FVSVIFLIVLA----ALLY 433
>sp|Q02760|CY1_RHOSH Cytochrome c1 OS=Rhodobacter sphaeroides GN=petC PE=1 SV=1
Length = 285
Score = 93.2 bits (230), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 80/257 (31%), Positives = 115/257 (44%), Gaps = 49/257 (19%)
Query: 31 HPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLV---GVSHTEAEAK 87
H + +S G +FD ++RG +VY VCAACH +F+ R+L G E + +
Sbjct: 27 HVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVR 86
Query: 88 REAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHG 147
A + V D E GE R GK +D FP A N A DLS + AR G
Sbjct: 87 AYATQFTVTD--EETGE--DREGKPTDHFPH--------SALENAA---DLSLMAKARAG 131
Query: 148 AE----DYVFHLLTGYMDPPAGDYVFHLLTGY-MDPPAGVQIRE--GLYFNPYFLGGA-- 198
+ L G P +Y++ +LTG+ +PP + E G Y+N F G+
Sbjct: 132 FHGPMGTGISQLFNGIGGP---EYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVP 188
Query: 199 ----------------IGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTR 242
I M L ++++EY DG A+ +A+DVS FL W EP+ R
Sbjct: 189 DTCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMAR 248
Query: 243 KR---MAIKCMTTLGVL 256
K+ A+ +T L VL
Sbjct: 249 KQAGFTAVMFLTVLSVL 265
>sp|O31216|CY1_ALLVD Cytochrome c1 OS=Allochromatium vinosum (strain ATCC 17899 / DSM
180 / NBRC 103801 / D) GN=petC PE=4 SV=1
Length = 244
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 95/214 (44%), Gaps = 28/214 (13%)
Query: 39 HSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDG 98
S +D D AS++RG + + N C CHS +++ Y L A+++ +++
Sbjct: 27 ESANIDLRDQASLQRGAKYFMNYCTGCHSLQYMRYNRL-------------AKDLGIDEI 73
Query: 99 PNEKGEMF--KRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVF-HL 155
+ +F +PG D +++A + G PPDL+ +T R + D+V+ +L
Sbjct: 74 ALRQNLLFGDAKPG---DLITKAMTDDDALKWF--GVVPPDLTLVTRWR--SPDWVYTYL 126
Query: 156 LTGYMD---PPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEY 212
+ Y+D P + V L G +Q R+ P G + + +++E
Sbjct: 127 KSFYLDDTRPYGVNNVLFPLVGMPHVLGDLQGRQEAVMEPSHEPGGEPTIKGV--KLVEE 184
Query: 213 EDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMA 246
+P + +D++ FL + GEP R+R+
Sbjct: 185 GGLSPQEYDTMVRDITNFLTYAGEPFQLERERIG 218
>sp|O67706|Y1854_AQUAE Uncharacterized protein aq_1854 OS=Aquifex aeolicus (strain VF5)
GN=aq_1854 PE=4 SV=1
Length = 152
Score = 35.8 bits (81), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 45 SFDHASIRRGYEVYKNVCAACHSAR 69
+ DH +++GYEVYK C+ACH R
Sbjct: 16 AVDHNLLQKGYEVYKKHCSACHIER 40
>sp|Q5HPS7|DPO3_STAEQ DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=polC PE=3 SV=2
Length = 1438
Score = 32.0 bits (71), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 5 GVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAA 64
G L G G++ + ++ + ++ PPH SH + FD S+ G+++ C
Sbjct: 879 GYLVGSRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSVGSGFDLPDKKCPT 938
Query: 65 C 65
C
Sbjct: 939 C 939
>sp|Q8CPG6|DPO3_STAES DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=polC PE=3 SV=1
Length = 1442
Score = 32.0 bits (71), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 5 GVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAA 64
G L G G++ + ++ + ++ PPH SH + FD S+ G+++ C
Sbjct: 883 GYLVGSRGSVGSSFVATMTEITEVNPLPPHYICSHCKTSEFFDDGSVGSGFDLPDKKCPT 942
Query: 65 C 65
C
Sbjct: 943 C 943
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 123,510,135
Number of Sequences: 539616
Number of extensions: 5363394
Number of successful extensions: 12305
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 12247
Number of HSP's gapped (non-prelim): 27
length of query: 305
length of database: 191,569,459
effective HSP length: 117
effective length of query: 188
effective length of database: 128,434,387
effective search space: 24145664756
effective search space used: 24145664756
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)