Query psy10277
Match_columns 305
No_of_seqs 164 out of 713
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 22:20:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10277.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10277hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3052|consensus 100.0 1.6E-98 3E-103 692.6 18.5 258 9-303 54-311 (311)
2 PF02167 Cytochrom_C1: Cytochr 100.0 1.4E-87 3.1E-92 612.1 12.2 218 37-291 1-219 (219)
3 COG2857 CYT1 Cytochrome c1 [En 100.0 1.8E-51 3.8E-56 380.8 11.6 220 36-292 28-250 (250)
4 TIGR03045 PS_II_C550 cytochrom 98.0 2.2E-05 4.8E-10 69.5 8.0 45 23-67 23-67 (159)
5 PRK14486 putative bifunctional 97.6 0.0004 8.7E-09 66.7 9.5 24 132-157 101-124 (294)
6 PTZ00405 cytochrome c; Provisi 97.5 9.4E-05 2E-09 61.9 4.1 22 48-69 11-32 (114)
7 TIGR02603 CxxCH_TIGR02603 puta 97.4 0.00013 2.9E-09 61.7 3.9 20 50-69 2-21 (133)
8 PRK13622 psbV cytochrome c-550 97.3 0.00044 9.5E-09 62.6 6.1 51 12-68 29-79 (180)
9 CHL00133 psbV photosystem II c 97.2 0.0003 6.4E-09 62.7 3.4 45 23-67 24-68 (163)
10 PF13442 Cytochrome_CBB3: Cyto 97.2 0.00051 1.1E-08 50.7 4.0 21 49-69 1-21 (67)
11 PF00034 Cytochrom_C: Cytochro 97.1 0.00025 5.3E-09 52.4 2.1 20 51-70 1-20 (91)
12 PRK13619 psbV cytochrome c-550 97.1 0.00039 8.4E-09 61.8 3.5 46 23-68 23-68 (160)
13 PRK13617 psbV cytochrome c-550 97.1 0.00043 9.4E-09 62.1 3.5 46 23-68 31-76 (170)
14 PRK13618 psbV cytochrome c-550 97.0 0.0007 1.5E-08 60.3 3.7 45 23-67 24-68 (163)
15 TIGR03872 cytochrome_MoxG cyto 96.9 0.00064 1.4E-08 58.3 2.4 25 46-70 39-63 (133)
16 PRK13621 psbV cytochrome c-550 96.7 0.0008 1.7E-08 60.4 2.0 39 30-68 45-83 (170)
17 TIGR03874 4cys_cytochr c-type 96.7 0.0022 4.7E-08 56.1 4.4 26 44-70 27-52 (143)
18 PRK14487 cbb3-type cytochrome 96.6 0.0074 1.6E-07 56.1 7.4 24 132-157 101-124 (217)
19 TIGR03046 PS_II_psbV2 photosys 96.5 0.0013 2.7E-08 58.3 2.0 39 30-68 34-72 (155)
20 TIGR00782 ccoP cytochrome c ox 96.5 0.01 2.2E-07 56.2 7.8 21 49-69 105-125 (285)
21 PTZ00048 cytochrome c; Provisi 96.3 0.0018 3.8E-08 54.1 1.3 22 49-70 13-34 (115)
22 PRK13620 psbV cytochrome c-550 96.1 0.0052 1.1E-07 56.9 3.5 45 23-67 76-120 (215)
23 COG2857 CYT1 Cytochrome c1 [En 96.1 0.0051 1.1E-07 57.8 3.5 51 105-159 83-133 (250)
24 CHL00183 petJ cytochrome c553; 95.9 0.0035 7.6E-08 50.7 1.2 19 50-68 25-43 (108)
25 TIGR00781 ccoO cytochrome c ox 95.6 0.038 8.2E-07 51.9 7.0 25 131-157 99-123 (232)
26 COG2010 CccA Cytochrome c, mon 95.1 0.0099 2.1E-07 49.5 1.4 24 46-69 46-69 (150)
27 PRK13697 cytochrome c6; Provis 95.1 0.0089 1.9E-07 48.1 1.0 18 51-68 28-45 (111)
28 PF14495 Cytochrom_C550: Cytoc 95.0 0.0093 2E-07 51.8 0.8 36 33-68 7-42 (135)
29 PF09098 Dehyd-heme_bind: Quin 94.5 0.021 4.5E-07 51.3 1.9 25 52-76 1-26 (167)
30 COG2863 Cytochrome c553 [Energ 94.4 0.045 9.7E-07 46.9 3.5 46 48-93 21-68 (121)
31 PRK14486 putative bifunctional 94.1 0.031 6.8E-07 53.8 2.4 25 46-70 210-234 (294)
32 TIGR00782 ccoP cytochrome c ox 93.5 0.036 7.7E-07 52.5 1.6 25 46-70 198-222 (285)
33 COG3474 Cytochrome c2 [Energy 91.6 0.08 1.7E-06 46.1 1.1 21 49-70 29-49 (135)
34 COG3258 Cytochrome c [Energy p 89.7 0.12 2.6E-06 49.7 0.6 22 49-70 160-181 (293)
35 COG4654 Cytochrome c551/c552 [ 88.1 1.1 2.4E-05 37.8 5.1 19 50-68 22-41 (110)
36 PF06537 DUF1111: Protein of u 85.3 0.54 1.2E-05 48.7 2.3 27 46-72 358-385 (499)
37 PF02433 FixO: Cytochrome C ox 83.6 1.5 3.3E-05 41.2 4.3 21 49-69 48-69 (226)
38 TIGR03791 TTQ_mauG tryptophan 82.6 0.56 1.2E-05 45.2 1.1 23 48-70 156-180 (291)
39 PRK14485 putative bifunctional 77.0 6 0.00013 42.9 6.6 19 51-69 537-556 (712)
40 PF01322 Cytochrom_C_2: Cytoch 76.5 1.6 3.4E-05 36.0 1.7 21 47-67 99-119 (122)
41 PRK13454 F0F1 ATP synthase sub 72.5 2.9 6.3E-05 37.4 2.5 27 265-291 30-56 (181)
42 PF09086 DUF1924: Domain of un 70.4 2 4.3E-05 35.8 0.9 24 47-70 7-39 (98)
43 PF10643 Cytochrome-c551: Phot 66.1 3.6 7.8E-05 38.7 1.7 41 46-89 167-209 (233)
44 COG3488 Predicted thiol oxidor 65.6 3.1 6.7E-05 41.8 1.3 31 48-78 348-379 (481)
45 PF03150 CCP_MauG: Di-haem cyt 61.9 4.3 9.4E-05 35.7 1.4 23 48-70 2-33 (159)
46 TIGR02162 torC trimethylamine- 61.3 4.7 0.0001 40.7 1.7 23 48-70 318-340 (386)
47 KOG3453|consensus 60.1 2.4 5.3E-05 35.9 -0.5 27 50-76 8-34 (110)
48 CHL00019 atpF ATP synthase CF0 59.1 5.1 0.00011 35.6 1.4 33 263-295 25-57 (184)
49 PRK13453 F0F1 ATP synthase sub 57.9 7.7 0.00017 34.2 2.3 31 265-295 21-51 (173)
50 COG3245 CycB Cytochrome c5 [En 57.1 3.9 8.4E-05 35.3 0.3 19 52-70 48-66 (126)
51 PRK15032 trimethylamine N-oxid 56.7 5.2 0.00011 40.4 1.1 21 50-70 317-337 (390)
52 COG1858 MauG Cytochrome c pero 54.6 6.5 0.00014 39.5 1.4 26 49-74 218-245 (364)
53 TIGR03597 GTPase_YqeH ribosome 53.0 8.7 0.00019 37.6 2.0 33 59-93 28-60 (360)
54 PRK09174 F0F1 ATP synthase sub 52.2 8.8 0.00019 35.2 1.7 25 267-291 54-78 (204)
55 PRK13796 GTPase YqeH; Provisio 51.1 10 0.00022 37.3 2.2 32 60-93 35-66 (365)
56 PF09626 DHC: Dihaem cytochrom 47.4 8.1 0.00018 33.0 0.7 24 58-89 1-25 (120)
57 PF09098 Dehyd-heme_bind: Quin 45.1 11 0.00024 34.1 1.2 33 53-90 91-123 (167)
58 PF03492 Methyltransf_7: SAM d 42.5 25 0.00055 34.3 3.3 69 185-257 94-188 (334)
59 CHL00118 atpG ATP synthase CF0 40.6 20 0.00044 31.0 2.1 23 269-291 25-47 (156)
60 PF07635 PSCyt1: Planctomycete 38.5 12 0.00025 27.6 0.2 9 62-70 1-9 (59)
61 COG3183 Predicted restriction 37.3 14 0.00031 35.7 0.7 28 58-89 240-267 (272)
62 PF07208 DUF1414: Protein of u 36.9 9.1 0.0002 27.6 -0.5 10 134-143 3-12 (44)
63 PRK06231 F0F1 ATP synthase sub 36.1 32 0.0007 31.4 2.8 13 226-238 20-32 (205)
64 PF13703 PepSY_TM_2: PepSY-ass 33.5 91 0.002 24.3 4.6 39 257-295 11-50 (88)
65 PRK07352 F0F1 ATP synthase sub 32.8 29 0.00063 30.5 1.9 32 264-295 21-52 (174)
66 COG1858 MauG Cytochrome c pero 32.6 23 0.00051 35.6 1.4 106 45-161 56-174 (364)
67 PF12669 P12: Virus attachment 32.5 32 0.00069 25.7 1.8 24 270-293 3-26 (58)
68 PHA03171 UL37 tegument protein 32.2 19 0.00041 37.0 0.7 58 219-292 422-480 (499)
69 PF11688 DUF3285: Protein of u 31.9 61 0.0013 23.5 3.0 26 258-283 19-44 (45)
70 PRK13689 hypothetical protein; 31.7 23 0.00049 28.3 0.9 21 132-157 26-46 (75)
71 PF11845 DUF3365: Protein of u 29.7 18 0.00039 31.4 0.0 9 59-67 146-154 (188)
72 PF12271 Chs3p: Chitin synthas 28.7 78 0.0017 31.1 4.2 36 212-249 143-190 (293)
73 TIGR03791 TTQ_mauG tryptophan 28.3 32 0.00068 33.3 1.4 23 48-70 3-34 (291)
74 COG3619 Predicted membrane pro 28.1 66 0.0014 30.3 3.5 69 219-290 148-223 (226)
75 PF12273 RCR: Chitin synthesis 27.9 75 0.0016 26.7 3.5 20 270-289 10-29 (130)
76 PF10577 UPF0560: Uncharacteri 27.3 44 0.00095 36.9 2.4 29 270-298 284-313 (807)
77 PRK15358 pathogenicity island 27.1 1.5E+02 0.0034 27.8 5.6 63 216-281 26-88 (239)
78 COG3082 Uncharacterized protei 27.0 32 0.00069 27.2 1.0 22 131-157 25-46 (74)
79 PRK09400 secE preprotein trans 26.9 1.6E+02 0.0035 22.3 4.8 32 218-249 8-39 (61)
80 PRK13460 F0F1 ATP synthase sub 26.6 43 0.00094 29.4 1.9 11 269-279 23-33 (173)
81 PHA02650 hypothetical protein; 26.4 1.1E+02 0.0025 24.7 4.0 26 270-295 56-81 (81)
82 PF12459 DUF3687: D-Ala-teicho 25.6 1.2E+02 0.0025 21.8 3.5 34 262-298 7-40 (42)
83 PRK09174 F0F1 ATP synthase sub 25.4 44 0.00096 30.6 1.8 29 267-295 58-86 (204)
84 COG3748 Predicted membrane pro 25.0 87 0.0019 31.7 3.8 39 56-95 329-372 (407)
85 PF14376 Haem_bd: Haem-binding 24.8 31 0.00067 29.6 0.6 22 55-76 37-60 (137)
86 PF06040 Adeno_E3: Adenovirus 24.7 33 0.00071 29.7 0.7 27 250-276 89-117 (127)
87 KOG2927|consensus 24.7 92 0.002 31.6 3.9 29 257-285 223-251 (372)
88 PRK14472 F0F1 ATP synthase sub 23.9 52 0.0011 28.9 1.9 17 267-283 23-39 (175)
89 PF03967 PRCH: Photosynthetic 23.9 1.1E+02 0.0024 27.0 3.8 20 270-289 18-37 (136)
90 TIGR02162 torC trimethylamine- 23.8 30 0.00065 35.0 0.4 11 60-70 45-55 (386)
91 PRK08475 F0F1 ATP synthase sub 23.6 32 0.0007 30.3 0.5 23 265-291 25-47 (167)
92 PF04478 Mid2: Mid2 like cell 22.6 32 0.0007 30.8 0.3 12 253-264 52-63 (154)
93 PF03908 Sec20: Sec20; InterP 21.9 99 0.0021 24.5 3.0 18 270-287 75-92 (92)
94 PRK08476 F0F1 ATP synthase sub 21.5 64 0.0014 27.6 1.9 7 267-273 12-18 (141)
95 PHA03290 envelope glycoprotein 21.3 86 0.0019 31.6 3.0 24 52-76 97-121 (357)
96 PRK13455 F0F1 ATP synthase sub 21.2 44 0.00096 29.6 0.9 16 267-282 31-46 (184)
97 TIGR03153 cytochr_NrfH cytochr 21.1 35 0.00077 29.1 0.3 16 53-68 96-111 (135)
98 PRK02693 apocytochrome f; Revi 21.0 32 0.00069 33.8 -0.0 22 270-291 284-305 (312)
99 PRK15032 trimethylamine N-oxid 20.8 38 0.00082 34.3 0.5 11 60-70 46-56 (390)
100 PF04718 ATP-synt_G: Mitochond 20.7 1.4E+02 0.0031 24.6 3.8 53 216-275 34-89 (103)
101 TIGR03806 chp_HNE_0200 conserv 20.5 56 0.0012 32.2 1.5 18 52-69 214-231 (317)
102 CHL00037 petA cytochrome f 20.3 33 0.00072 33.9 -0.1 22 270-291 292-313 (320)
103 PF07859 Abhydrolase_3: alpha/ 20.2 81 0.0017 27.0 2.3 55 210-266 35-89 (211)
104 PF02899 Phage_int_SAM_1: Phag 20.2 78 0.0017 23.2 2.0 21 216-236 15-35 (84)
No 1
>KOG3052|consensus
Probab=100.00 E-value=1.6e-98 Score=692.57 Aligned_cols=258 Identities=67% Similarity=1.135 Sum_probs=250.6
Q ss_pred hhhhHHhhhccccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHH
Q psy10277 9 GGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKR 88 (305)
Q Consensus 9 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~ 88 (305)
.++++++|+++.+ +.|+++..|+|+++|+|+|+|++||++|+|||+|||+|||++||||+++.||+|+++-+||||+|+
T Consensus 54 g~~~ll~yal~~s-vsAs~~~lh~~~~~W~h~g~lss~DhaSiRRGyqVYkqVCaaCHSm~~iayR~lVgv~~Te~EaKa 132 (311)
T KOG3052|consen 54 GIGGLLVYALETS-VSASEHGLHPPAYPWPHSGLLSSFDHASIRRGYQVYKQVCAACHSMDLIAYRHLVGVCYTEEEAKA 132 (311)
T ss_pred hhhHHHHHHhhcc-cccccCCcCCccCCCCCCCccccccHHHHhhhHHHHHHHHHHhhhhHHHHHHhhhhhhccHHHHHH
Confidence 3335577788887 888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcccCCCCcCCCCccCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcCCCCCCCcch
Q psy10277 89 EAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYV 168 (305)
Q Consensus 89 ~a~~~~v~dgp~~~g~~~~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f~~~~~~~~v 168 (305)
+|+|++|.|||||+|+||+||||++|.||+||||++|||++|+|++|||||+|++||+||.|||||+||
T Consensus 133 ~A~eiev~Dgpdd~G~~~~RPGkLsD~~P~PYpNeeAAraANnGA~PPDLS~iv~aRhgG~DYvfSLLT----------- 201 (311)
T KOG3052|consen 133 MAAEIEVVDGPDDEGEMFTRPGKLSDYFPSPYPNEEAARAANNGAYPPDLSLIVKARHGGEDYVFSLLT----------- 201 (311)
T ss_pred hhhheeeccCCCCCCCcccCCccccccCCCCCCCHHHHHHhcCCCCCCCchhhhhhhcCCcceeeehhh-----------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccccCCCCCCcccCCCcccCCCCCCCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHHHhhcee
Q psy10277 169 FHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIK 248 (305)
Q Consensus 169 ~~~l~GY~dpP~G~~~~~g~~yN~~fpg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~ 248 (305)
||+|||+|+.+++|+||||||||+.|+||++|.|+.||||||||+|.+||||||++||.|++||++|+||+||+|
T Consensus 202 -----GY~epPAGv~l~~G~~fNPyFpGgaIaMa~~l~de~vEyeDgtPAT~sQ~aKDV~~FL~WasEPehD~RK~~g~K 276 (311)
T KOG3052|consen 202 -----GYCEPPAGVSLREGLYFNPYFPGGAIAMAKVLFDEVVEYEDGTPATMSQMAKDVVTFLHWASEPEHDERKLMGLK 276 (311)
T ss_pred -----CCCCCCCCcccCCCcccCCCCCCcccccchhhcccceeecCCCchhHHHHHHHHHHHHHhccCcchhHHHHhhhH
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeEecCCCC
Q psy10277 249 CMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSK 303 (305)
Q Consensus 249 v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~~~~~~~ 303 (305)
| ++.|.++++++|+.||.+|+.+|+|||.|+|+++
T Consensus 277 ~--------------------i~il~~l~~~s~y~KR~kWs~lKsrK~~f~~~~~ 311 (311)
T KOG3052|consen 277 V--------------------IFILSFLTLLSYYIKRHKWSVLKSRKLVFDPPKK 311 (311)
T ss_pred H--------------------HHHHHHHHHHHHHHHHhhccccccceEEecCCCC
Confidence 9 9999999999999999999999999999999764
No 2
>PF02167 Cytochrom_C1: Cytochrome C1 family; InterPro: IPR002326 Cytochrome bc1 complex (ubiquinol:ferricytochrome c oxidoreductase) is found in mitochondria, photosynthetic bacteria and other prokaryotes. It is minimally composed of three subunits: cytochrome b, carrying a low- and a high-potential haem group; cytochrome c1 (cyt c1); and a high-potential Rieske iron-sulphur protein. The general function of the complex is electron transfer between two mobile redox carriers, ubiquinol and cytochrome c; the electron transfer is coupled with proton translocation across the membrane, thus generating proton-motive force in the form of an electrochemical potential that can drive ATP synthesis. In its structure and functions, the cytochrome bc1 complex bears extensive analogy to the cytochrome b6f complex of chloroplasts and cyanobacteria; cyt c1 plays an analogous role to cytochrome f, in spite of their different structures [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1P84_D 2IBZ_D 1EZV_D 3CX5_O 3CXH_O 1KB9_D 1KYO_D 1ZRT_Q 2CA4_B 2C9X_B ....
Probab=100.00 E-value=1.4e-87 Score=612.11 Aligned_cols=218 Identities=56% Similarity=0.987 Sum_probs=197.4
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccC-CCCCHHHHHHHHHHhcccCCCCcCCCCccCCCCCCCC
Q psy10277 37 WSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVG-VSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDT 115 (305)
Q Consensus 37 w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~-~g~t~~evk~~a~~~~v~dgp~~~g~~~~r~~~~~D~ 115 (305)
|+|+|+++++|++|||||+|||+|||++||||+|+|||||.+ +++||+|||+++++++|.| |||+|+||+|+++++|.
T Consensus 1 w~~~g~~~~~D~aslqRG~qvy~~~C~~CHsl~~~~y~~L~~d~~~~e~~vk~~a~~~~v~d-~~d~g~~~~r~~~~~D~ 79 (219)
T PF02167_consen 1 WSFAGPFGSFDKASLQRGAQVYMEVCASCHSLKYVRYRRLADDLGLTEDEVKAIAAEYQVPD-PDDEGEMFERPAKPSDY 79 (219)
T ss_dssp -TTSSTT----HHHHHHHHHHHHHTGGGTSBCTTCBGGGGTTSTSSHHHHHHHHHHTSEEEE-TTTTSSTEEEEHHTTSB
T ss_pred CCCCCCCCcccHHHHHHHHHHHHHHHhhccccccccHHHHhhccCCCHHHHHHHHHhcccCC-cccCCccccccchhhcc
Confidence 999999999999999999999999999999999999999976 9999999999999999999 99999999999999999
Q ss_pred CCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcCCCCCCCcchhhcccccCCCCCCcccCCCcccCCCCC
Q psy10277 116 FPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFL 195 (305)
Q Consensus 116 ~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f~~~~~~~~v~~~l~GY~dpP~G~~~~~g~~yN~~fp 195 (305)
|++||+|++||+++|+|++|||||||+|+|++|+|||||||| ||.+||.|+.+++|.+||+|||
T Consensus 80 ~~~p~~~~~aa~~~n~Ga~PPDLSli~raR~~G~dyiys~L~----------------gy~~~p~~~~~~~~~~~N~~fp 143 (219)
T PF02167_consen 80 FPSPYPNEDAARAANNGAVPPDLSLIARARHGGADYIYSLLT----------------GYYEDPAGVSVRPGGYYNPYFP 143 (219)
T ss_dssp E--SSSSHHHHHHTTTTTTS-BCTTTTTSSTTHHHHHHHHHC----------------TBSS--TTGTTSTTSEEETTST
T ss_pred cCCCCCCHHHHHHHhCCCCCCchHHHHHHhcCchHHHHHHHh----------------ccCCCcccccCCCCCccccccC
Confidence 999999999999999999999999999999999999999999 6778899999999999999999
Q ss_pred CCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHHHHHHHHHHH
Q psy10277 196 GGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTI 275 (305)
Q Consensus 196 g~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~i 275 (305)
|+.|+||+||++++|+|+||||+|++|||+||||||+|+|||++++||+||+|| |+||+|
T Consensus 144 g~~iaMP~~L~~~~v~y~dGt~at~~q~a~DVv~FL~w~aeP~~~~R~~~G~~v--------------------l~fL~i 203 (219)
T PF02167_consen 144 GGAIAMPPPLSDGQVEYDDGTPATVDQMAKDVVNFLAWAAEPEKDERKRMGLKV--------------------LGFLLI 203 (219)
T ss_dssp TSEESS--TSSTTSS-BTTTB---HHHHHHHHHHHHHHHH-TTHHHHHHHHHHH--------------------HHHHHH
T ss_pred CCcccchhhhhhhcccccCCCcchHHHHHHHHHHHHHHHcCchHHHHHHHHHHH--------------------HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHhhcccC
Q psy10277 276 LTAALFYLKRYKFSSL 291 (305)
Q Consensus 276 l~~l~y~lkr~~W~~i 291 (305)
|++++|++||++||+|
T Consensus 204 l~~l~y~~kk~~W~dV 219 (219)
T PF02167_consen 204 LTVLAYLLKKEYWSDV 219 (219)
T ss_dssp HHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHccCC
Confidence 9999999999999986
No 3
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=100.00 E-value=1.8e-51 Score=380.85 Aligned_cols=220 Identities=40% Similarity=0.693 Sum_probs=212.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHHHHHHhcccCCCCcCCCCccCCCCCCCC
Q psy10277 36 KWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDT 115 (305)
Q Consensus 36 ~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~~v~dgp~~~g~~~~r~~~~~D~ 115 (305)
.|.+.++++.+|++++|||+|+|+++|.+|||+++++|+++.++|+++++ +.++.++.+.|++++.++||.|++..+|.
T Consensus 28 ~~~~~~~~~~~d~~~lq~g~~~~~~~c~~chs~~~~~~~~~~d~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (250)
T COG2857 28 VWLFKGPFDLFDKGSLQRGAQLYKEYCSACHSLKLQRYRRLKDLGLPDDE-KFLALEFTVEDKPGDTGHMFMRPADAADW 106 (250)
T ss_pred cccccccchhhhhHHhhhceeeeecCChhhcccccccccccccccCCchh-ccccccccccCCCccccccccCccchhhh
Confidence 99999999999999999999999999999999999999999999999999 89999999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHhCCCCCCCchhHHhhh-cCCchhHHHhhhcCCCCCCCcchhhcccccCC-CCCCcccCCCcccCCC
Q psy10277 116 FPSPYPNEEAARAANNGAYPPDLSYITMAR-HGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMD-PPAGVQIREGLYFNPY 193 (305)
Q Consensus 116 ~~sp~~n~~aA~~an~Ga~PPDLSliaraR-~~G~dyIYs~L~~f~~~~~~~~v~~~l~GY~d-pP~G~~~~~g~~yN~~ 193 (305)
|+.|++++++++.+++|+.|||++...++| +++++++++.++ ||.| +|.|..+.+|..+|++
T Consensus 107 ~~a~~pd~~~~a~a~~~a~~~~~~~~~~~~ch~~~~~~~~~~t----------------~~~~l~p~g~~~~~g~~~~~~ 170 (250)
T COG2857 107 FGAPPPDLTLAARANGGAAPYDLLRQFYARCHGVPDYINSLLT----------------GYVDLPPAGLRTPQGTSYNPY 170 (250)
T ss_pred cCCCCCchhhhhhhhcccchHHHHHHHHhhcccCCCCcCeeec----------------CCCCCCCcccccCCccccccc
Confidence 999999999999999999999999999999 888899988888 7877 8999999999999999
Q ss_pred CCC-CccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHHHHHHHH
Q psy10277 194 FLG-GAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGL 272 (305)
Q Consensus 194 fpg-~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~f 272 (305)
|+| ..+.|++|+.+..+++.+|+|++.||+++||||||+|++||++++||+||++| |+|
T Consensus 171 ~~~~~~~~i~~p~~~k~~~~m~~~~~~tdq~~~dlvaYL~~~~ep~~~~rk~~g~~v--------------------~~f 230 (250)
T COG2857 171 FEGELGIFIADPLKDKPGTYMPGNPALTDQEVKDLVAYLKWAAEPEKEERKRLGFKV--------------------MIF 230 (250)
T ss_pred chhhHhhhccCccccCCcCCCCCChhhHHHHHHHHHHHHHHccCccHHHhhcCCeee--------------------hhH
Confidence 998 88999999999999999999999999999999999999999999999999999 999
Q ss_pred HHHHHHHHHHHHHhhcccCC
Q psy10277 273 MTILTAALFYLKRYKFSSLK 292 (305)
Q Consensus 273 l~il~~l~y~lkr~~W~~i~ 292 (305)
|+||++|+|++||++|+++|
T Consensus 231 l~~~~~l~~~~k~~~w~~~~ 250 (250)
T COG2857 231 LVVFTILAYLLKKEYWSDVH 250 (250)
T ss_pred HHHHHHHHHHHHHHHhhcCC
Confidence 99999999999999999997
No 4
>TIGR03045 PS_II_C550 cytochrome c-550. Members of this protein family are cytochrome c-550, the PsbV extrinsic protein of photosystem II, from both Cyanobacteria and chloroplasts. A paralog to this protein, PsbV2, is found in some species in addition to PsbV itself.
Probab=98.01 E-value=2.2e-05 Score=69.53 Aligned_cols=45 Identities=20% Similarity=0.525 Sum_probs=39.7
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhccccc
Q psy10277 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHS 67 (305)
Q Consensus 23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHS 67 (305)
+.|.+-...+...+++..|-.-++..+++.+|.++|.+.|++||.
T Consensus 23 ~~a~~~~~~~~t~~~~~~g~~~~~~~~~~~~Gk~lF~~~Ca~CH~ 67 (159)
T TIGR03045 23 AQAAELDEETRTVPLNSTGETVTLTEEQVKRGKRLFNTACGTCHV 67 (159)
T ss_pred HHHHhcccccceeeecCCCCeEEeChHhHHHHHHHHHHHHHHhCC
Confidence 556666667888999999988889999999999999999999996
No 5
>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
Probab=97.57 E-value=0.0004 Score=66.69 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=19.7
Q ss_pred CCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277 132 GAYPPDLSYITMARHGAEDYVFHLLT 157 (305)
Q Consensus 132 Ga~PPDLSliaraR~~G~dyIYs~L~ 157 (305)
+..=|||+.+..-| ..+|++.+|.
T Consensus 101 ~r~GPDL~~vG~r~--~~~w~~~~l~ 124 (294)
T PRK14486 101 KRTGPDLARIGGKY--PDAWHYAHFE 124 (294)
T ss_pred CCCCCchhhhcccC--CHHHHHHHHh
Confidence 55679999998655 5899999988
No 6
>PTZ00405 cytochrome c; Provisional
Probab=97.53 E-value=9.4e-05 Score=61.86 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHhhccccccc
Q psy10277 48 HASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 48 ~asLqRG~qVf~~vCaaCHSlk 69 (305)
.+...||.++|.+.|++||++.
T Consensus 11 ~gd~~~G~~lF~~~C~aCH~~~ 32 (114)
T PTZ00405 11 PGDAERGEKLFKGRAAQCHTAT 32 (114)
T ss_pred ccCHHHHHHHHHhhhHhhCCCC
Confidence 3467899999998999999964
No 7
>TIGR02603 CxxCH_TIGR02603 putative heme-binding domain, Pirellula/Verrucomicrobium type. This model represents a domain limited to very few species but expanded into large paralogous families in some species that conain it. We find it in over 20 copies each in Pirellula sp. strain 1 (phylum Planctomycetes) and Verrucomicrobium spinosum DSM 4136 (phylum Verrucomicrobia), and no matches above trusted cutoff an any other species so far. This domain, about 140 amino acids long, contains an absolutely conserved motif CxxCH, the cytochrome c family heme-binding site signature (PS00190).
Probab=97.44 E-value=0.00013 Score=61.70 Aligned_cols=20 Identities=30% Similarity=0.695 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlk 69 (305)
.+++|.++|.+.|++||+..
T Consensus 2 d~~~G~~~f~~~C~~CH~~~ 21 (133)
T TIGR02603 2 DAEKGKAVYAQRCYVCHRIG 21 (133)
T ss_pred CHHHHHHHHHhHHHHhCCCC
Confidence 46899999999999999974
No 8
>PRK13622 psbV cytochrome c-550; Provisional
Probab=97.33 E-value=0.00044 Score=62.55 Aligned_cols=51 Identities=20% Similarity=0.359 Sum_probs=32.9
Q ss_pred hHHhhhccccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277 12 GALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 12 ~~~~~~~~~~~~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl 68 (305)
+|+.|++.++ ||.....-.+ -+.. -+..+-.+++++|.|+|.++|++||+.
T Consensus 29 ~~~~~~~~~~--Ha~m~~rvva---l~p~-e~~~~s~~~~~~G~~lF~~~Ca~CH~~ 79 (180)
T PRK13622 29 AGFAWGLAPA--FAARDIPAVA---LSPT-ESITFTEAQLAKGKKLFNRACAQCHVG 79 (180)
T ss_pred hhhhccCCch--hhccccceec---cCcc-ccccCCHHHHHHHHHHHHhhhHHhccC
Confidence 5666766655 5443222111 1111 134567888999999999999999975
No 9
>CHL00133 psbV photosystem II cytochrome c550; Validated
Probab=97.19 E-value=0.0003 Score=62.69 Aligned_cols=45 Identities=22% Similarity=0.417 Sum_probs=39.9
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhccccc
Q psy10277 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHS 67 (305)
Q Consensus 23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHS 67 (305)
+.|.+-.......+++..|-.-++..+++.+|.++|.+.|++||.
T Consensus 24 ~~a~~~~~~~~~v~~~~~g~~~~~t~~~~~~Gk~lF~~~CaaCH~ 68 (163)
T CHL00133 24 ALAIELDEATRTVVLDSSGKTVVLTPEQVKRGKRLFNASCGACHV 68 (163)
T ss_pred hhHhhccccceeeeeCCCCCeEeeCHHHHHHHHHHHHhhHHHhCC
Confidence 666777778888999999887889999999999999999999996
No 10
>PF13442 Cytochrome_CBB3: Cytochrome C oxidase, cbb3-type, subunit III ; PDB: 1KB0_A 2DGE_D 2CE1_A 2CE0_A 2V07_A 1W2L_A 2ZOO_A 2ZBO_G 1DVV_A 2EXV_A ....
Probab=97.18 E-value=0.00051 Score=50.67 Aligned_cols=21 Identities=33% Similarity=0.797 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhccccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSlk 69 (305)
|++++|.++|.++|++||+..
T Consensus 1 a~~~~G~~ly~~~C~~CH~~~ 21 (67)
T PF13442_consen 1 ADAAKGKALYEQNCASCHGPG 21 (67)
T ss_dssp -HHHHHHHHHHHHTHHHHGTG
T ss_pred CcHHHHHHHHHhHhHHhcCCC
Confidence 578999999999999999943
No 11
>PF00034 Cytochrom_C: Cytochrome c; InterPro: IPR003088 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class I includes the low-spin soluble cytC of mitochondria and bacteria, with the haem-attachment site towards the N terminus, and the sixth ligand provided by a methionine residue about 40 residues further on towards the C terminus. On the basis of sequence similarity, class I cytC were further subdivided into five classes, IA to IE. Class IB includes the eukaryotic mitochondrial cytC and prokaryotic 'short' cyt c2 exemplified by Rhodopila globiformis cyt c2; class IA includes 'long' cyt c2, such as Rhodospirillum rubrum cyt c2 and Aquaspirillum itersonii cyt c-550, which have several extra loops by comparison with class IB cytC.; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding; PDB: 1YNR_B 2AI5_A 1AYG_A 3O5C_C 1YEA_A 3CXH_W 1YTC_A 1YEB_A 2YBB_Y 2B4Z_A ....
Probab=97.14 E-value=0.00025 Score=52.45 Aligned_cols=20 Identities=45% Similarity=0.806 Sum_probs=17.6
Q ss_pred HHHHHHHHHHhhcccccccc
Q psy10277 51 IRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 51 LqRG~qVf~~vCaaCHSlky 70 (305)
.+||.+||.+.|++||++.-
T Consensus 1 a~~G~~l~~~~C~~CH~~~~ 20 (91)
T PF00034_consen 1 AARGKELFQANCAACHGADG 20 (91)
T ss_dssp HHHHHHHHHHHTTTTHBTST
T ss_pred ChhHHHHHhCcChhcCCCCC
Confidence 47999999889999999754
No 12
>PRK13619 psbV cytochrome c-550; Provisional
Probab=97.13 E-value=0.00039 Score=61.79 Aligned_cols=46 Identities=17% Similarity=0.389 Sum_probs=41.6
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl 68 (305)
+.|.+-...+...+++..|-.-++..+++.+|.|+|.+.|++||..
T Consensus 23 a~a~eld~~~~tv~~~~~G~t~~~s~~d~~~GkklF~~~Ca~CH~g 68 (160)
T PRK13619 23 ANALELDEATRTIPLNEAGETTTLTSKQITNGQRLFVQECTQCHLQ 68 (160)
T ss_pred hhHhhccccceeeeeCCCCCeEEeCHHHHHHHHHHHHHHHHHcccC
Confidence 6677777788889999999888899999999999999999999996
No 13
>PRK13617 psbV cytochrome c-550; Provisional
Probab=97.09 E-value=0.00043 Score=62.09 Aligned_cols=46 Identities=24% Similarity=0.492 Sum_probs=40.1
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl 68 (305)
|.|.+-...+...+++..|-.-++..+++.+|.++|.+.|++||..
T Consensus 31 A~A~~ld~~~~tv~~~~~g~~~~~s~~~~~~G~~~F~~~C~~CH~~ 76 (170)
T PRK13617 31 AQAAQWDAETLTVPADPSGSQVTFSESEIKAGRKVFNTSCGTCHAG 76 (170)
T ss_pred hhhhhccccceeeecCCCCCeEEeCHHHHHHHHHHHHcchhhhccC
Confidence 5566666777889999999888899999999999999999999964
No 14
>PRK13618 psbV cytochrome c-550; Provisional
Probab=96.97 E-value=0.0007 Score=60.32 Aligned_cols=45 Identities=18% Similarity=0.449 Sum_probs=34.5
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhccccc
Q psy10277 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHS 67 (305)
Q Consensus 23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHS 67 (305)
+.|.+-.......+.+..|-.-++..+++++|.++|.+.|++||.
T Consensus 24 a~A~~~d~~t~Tv~~~~~g~tv~~s~~~~~~G~~lF~~~Ca~CH~ 68 (163)
T PRK13618 24 ATAAELDEATRTVPLNAQGKTVTLSLKQVKEGKRLFNYACAQCHA 68 (163)
T ss_pred HHHhhcccccceeccCCCCCeeecChhhHHHHHHHHHHHHHHhcC
Confidence 334433344456778777766678999999999999999999995
No 15
>TIGR03872 cytochrome_MoxG cytochrome c(L), periplasmic. This model describes a periplasmic c-type cytochrome that serves as the primary electron acceptor for the quinoprotein methanol dehydrogenase, a PQQ enzyme. The member from Paracoccus denitrificans is also characterized as an electron acceptor for methylamine dehydrogenase, a tryptophan tryptophylquinone enzyme. This protein is called cytochrome c(L) in methylotrophic bacteria such Methylobacterium extorquens, but c551i in Paracoccus denitrificans.
Probab=96.86 E-value=0.00064 Score=58.34 Aligned_cols=25 Identities=20% Similarity=0.616 Sum_probs=22.3
Q ss_pred CCHHHHHHHHHHHHHhhcccccccc
Q psy10277 46 FDHASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 46 ~D~asLqRG~qVf~~vCaaCHSlky 70 (305)
-|.+++++|.++|.++|++||+.+-
T Consensus 39 ~~~~~~a~G~~ly~~~CAaCHG~~g 63 (133)
T TIGR03872 39 EDAEALKKGESLFATACSGCHGHLA 63 (133)
T ss_pred CCHHHHHHHHHHHHHhhHHhCCCCC
Confidence 4788999999999999999999744
No 16
>PRK13621 psbV cytochrome c-550; Provisional
Probab=96.71 E-value=0.0008 Score=60.37 Aligned_cols=39 Identities=21% Similarity=0.530 Sum_probs=34.9
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277 30 LHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 30 ~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl 68 (305)
..+...+++..|-.-+|..+++.+|.|+|.++|++||-.
T Consensus 45 ~~~~~v~~~~~g~~~~~s~~d~~~G~~lF~~~Ca~CH~g 83 (170)
T PRK13621 45 TEPVELPLDAAGETQTFSPEQLTDGKQLFDSNCLNCHVG 83 (170)
T ss_pred CCceEeeeCCCCCeEEeCHHHHHhHHHHHHHHHHHhccC
Confidence 457778899998888899999999999999999999954
No 17
>TIGR03874 4cys_cytochr c-type cytochrome, methanol metabolism-related. This family represents a c-type cytochrome related to (but excluding) cytochrome c-555 of Methylococcus capsulatus. Members contain four invariant Cys residues, including two from a heme-binding motif shared with c-555, and two others.
Probab=96.68 E-value=0.0022 Score=56.15 Aligned_cols=26 Identities=27% Similarity=0.611 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcccccccc
Q psy10277 44 DSFDHASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 44 ~~~D~asLqRG~qVf~~vCaaCHSlky 70 (305)
+..|..++. |+++|..+|++||+..-
T Consensus 27 ~~~d~~~~~-G~~lY~~~CAaCHG~dG 52 (143)
T TIGR03874 27 GTVDWFTYS-GYRRYHSECHVCHGPDG 52 (143)
T ss_pred Ccccccccc-HHHHHHHHHHHhCCCCC
Confidence 356777776 99999999999999643
No 18
>PRK14487 cbb3-type cytochrome c oxidase subunit II; Provisional
Probab=96.59 E-value=0.0074 Score=56.14 Aligned_cols=24 Identities=17% Similarity=0.205 Sum_probs=19.5
Q ss_pred CCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277 132 GAYPPDLSYITMARHGAEDYVFHLLT 157 (305)
Q Consensus 132 Ga~PPDLSliaraR~~G~dyIYs~L~ 157 (305)
+..=|||+.+..-+ ..+|++..|.
T Consensus 101 ~RtGPDLt~vG~R~--s~~w~~~hl~ 124 (217)
T PRK14487 101 KRTGPDLARVGGRY--SDEWHRNHLI 124 (217)
T ss_pred CCCCcchhhhhccC--CHHHHHHHHh
Confidence 56779999998533 6799999998
No 19
>TIGR03046 PS_II_psbV2 photosystem II cytochrome PsbV2. Members of this protein family are PsbV2, a protein closely related cytochrome c-550 (PsbV), a protein important to the water-splitting and oxygen-evolving activity of photosystem II. Mutant studies in Thermosynechococcus elongatus showed PsbV2 can partially replace PsbV, from which it appears to have arisen first by duplication, then by intergenic recombination with a different gene.
Probab=96.54 E-value=0.0013 Score=58.34 Aligned_cols=39 Identities=23% Similarity=0.543 Sum_probs=34.7
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277 30 LHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 30 ~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl 68 (305)
..|-..+++..|-.-+|..+++.+|.++|.++|++||..
T Consensus 34 ~~~~~~~~~~~g~~~~~s~~d~~~G~~lF~~~Ca~CH~g 72 (155)
T TIGR03046 34 TGPVELPLDAQGELKTFTPEQLTDGKNLFESNCLNCHVG 72 (155)
T ss_pred CCceEeecCCCCCeEEeCHHHHHhHHHHHHHHHHHhccC
Confidence 356678899999888899999999999999999999974
No 20
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=96.47 E-value=0.01 Score=56.18 Aligned_cols=21 Identities=24% Similarity=0.653 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHhhccccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSlk 69 (305)
..+++|.++|.++|++||+..
T Consensus 105 ~a~~~G~~lf~~~Ca~CHG~~ 125 (285)
T TIGR00782 105 YARNAGAAIFRTWCAQCHGSG 125 (285)
T ss_pred HHHHHHHHHHHHHhHHhCCCC
Confidence 356899999999999999963
No 21
>PTZ00048 cytochrome c; Provisional
Probab=96.27 E-value=0.0018 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.730 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSlky 70 (305)
+.++||.++|++.|++||++.-
T Consensus 13 ~~~~~G~~~f~~~C~~CH~~~~ 34 (115)
T PTZ00048 13 GDAKKGAKLFKAKCAQCHTINK 34 (115)
T ss_pred ccHHHHHHHHHhhhhhcCCCcC
Confidence 3577999999999999999753
No 22
>PRK13620 psbV cytochrome c-550; Provisional
Probab=96.10 E-value=0.0052 Score=56.88 Aligned_cols=45 Identities=20% Similarity=0.415 Sum_probs=39.0
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhccccc
Q psy10277 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHS 67 (305)
Q Consensus 23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHS 67 (305)
|.|.+-...+...+.+..|-.-++..+++.+|.++|.+.|++||.
T Consensus 76 a~A~~ld~~trtv~ln~~G~tvtfS~eq~~~GkqLF~~~Ca~CHV 120 (215)
T PRK13620 76 AQAAELTAETRTVKLNPQGDNVTLSLKQVAEGKQLFAYACGQCHV 120 (215)
T ss_pred hhHHHhhccceeeeeCCCCCeecCCHHHHHHHHHHHHhhhhhccC
Confidence 556666677788899999887789999999999999999999994
No 23
>COG2857 CYT1 Cytochrome c1 [Energy production and conversion]
Probab=96.08 E-value=0.0051 Score=57.82 Aligned_cols=51 Identities=29% Similarity=0.283 Sum_probs=43.5
Q ss_pred CccCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcC
Q psy10277 105 MFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGY 159 (305)
Q Consensus 105 ~~~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f 159 (305)
.++-..+++|.+...++.+..++ |+++.|||+++++++| |.+|.|+||+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~--~~~a~~pd~~~~a~a~--~~a~~~~~~~~~ 133 (250)
T COG2857 83 EFTVEDKPGDTGHMFMRPADAAD--WFGAPPPDLTLAARAN--GGAAPYDLLRQF 133 (250)
T ss_pred cccccCCCccccccccCccchhh--hcCCCCCchhhhhhhh--cccchHHHHHHH
Confidence 34445788888888888888865 9999999999999998 889999999976
No 24
>CHL00183 petJ cytochrome c553; Provisional
Probab=95.86 E-value=0.0035 Score=50.73 Aligned_cols=19 Identities=32% Similarity=0.878 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhcccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSl 68 (305)
.+.+|.++|.++|++||+.
T Consensus 25 ~~~~G~~ly~~~Ca~CHg~ 43 (108)
T CHL00183 25 DLDNGEQIFSANCAACHAG 43 (108)
T ss_pred cHHHHHHHHHHHHHHHCCC
Confidence 3678999999999999984
No 25
>TIGR00781 ccoO cytochrome c oxidase, cbb3-type, subunit II. This model describes the monoheme subunit of the cbb3-type cytochrome oxidase, found in a subset of Proteobacterial species. Species having this protein also have CcoN (subunit I, containing copper and two heme groups), CcoP (subunit III, containing two hemes), and CcoQ (essential for incorporation of the prosthetic groups).
Probab=95.60 E-value=0.038 Score=51.95 Aligned_cols=25 Identities=16% Similarity=0.223 Sum_probs=19.9
Q ss_pred CCCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277 131 NGAYPPDLSYITMARHGAEDYVFHLLT 157 (305)
Q Consensus 131 ~Ga~PPDLSliaraR~~G~dyIYs~L~ 157 (305)
-+..=|||+.+..-+ ..+|++..|.
T Consensus 99 s~RtGPDLt~vG~R~--s~~wh~~hl~ 123 (232)
T TIGR00781 99 SKRTGPDLARVGGRY--SDEWHVKHLF 123 (232)
T ss_pred CCCcCcCcccccccC--CHHHHHHHHh
Confidence 367789999998644 4699999888
No 26
>COG2010 CccA Cytochrome c, mono- and diheme variants [Energy production and conversion]
Probab=95.10 E-value=0.0099 Score=49.47 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHHhhccccccc
Q psy10277 46 FDHASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 46 ~D~asLqRG~qVf~~vCaaCHSlk 69 (305)
.+.....+|.++|.++|++||+..
T Consensus 46 ~~~~~~~~G~~~f~~~C~~CHg~~ 69 (150)
T COG2010 46 APAAARGAGLALFLGNCAACHGPN 69 (150)
T ss_pred cHHHHHHHHHHHhcccchhccCCC
Confidence 455689999999999999999986
No 27
>PRK13697 cytochrome c6; Provisional
Probab=95.10 E-value=0.0089 Score=48.13 Aligned_cols=18 Identities=33% Similarity=0.827 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhhcccccc
Q psy10277 51 IRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 51 LqRG~qVf~~vCaaCHSl 68 (305)
.++|.++|.++|++||+.
T Consensus 28 ~~~G~~ly~~~C~~CHg~ 45 (111)
T PRK13697 28 AANGEQVFSANCASCHAG 45 (111)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 468999999999999984
No 28
>PF14495 Cytochrom_C550: Cytochrome c-550 domain; PDB: 3ARC_V 1IZL 3A0H_V 3A0B_v 1E29_A 1F1C_B 1S5L_V 4FBY_i 3PRR_V 3PRQ_V ....
Probab=94.95 E-value=0.0093 Score=51.77 Aligned_cols=36 Identities=22% Similarity=0.563 Sum_probs=27.6
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277 33 PHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 33 ~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl 68 (305)
-..+++..|-.-++...++.||.++|.+.|+.||--
T Consensus 7 rtv~ln~~G~t~~~s~~q~~~GkrLF~~~C~~CH~G 42 (135)
T PF14495_consen 7 RTVPLNEQGETVTFSPEQLKRGKRLFNASCAQCHVG 42 (135)
T ss_dssp TEEESSTTS-EEE--HHHHHHHHHHHHHHTHHHHGG
T ss_pred eeeeeCCCCCEEEECHHHHHHHHHHHHHHHHhhccC
Confidence 345566667667789999999999999999999974
No 29
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=94.51 E-value=0.021 Score=51.25 Aligned_cols=25 Identities=28% Similarity=0.655 Sum_probs=17.7
Q ss_pred HHHHHHHHHhhccccccccc-ccccc
Q psy10277 52 RRGYEVYKNVCAACHSARFI-CYRNL 76 (305)
Q Consensus 52 qRG~qVf~~vCaaCHSlky~-~y~~l 76 (305)
|.|.++..+.|++|||..+. .|.|+
T Consensus 1 q~G~~Lv~~kC~~CHs~~~~g~~sRI 26 (167)
T PF09098_consen 1 QDGEQLVQEKCAGCHSADYDGALSRI 26 (167)
T ss_dssp --HHHHHHHCHCCTC-EECTTEETTG
T ss_pred CcHHHHHHHHHHHhcCccccCccccc
Confidence 67999999999999998762 35543
No 30
>COG2863 Cytochrome c553 [Energy production and conversion]
Probab=94.36 E-value=0.045 Score=46.85 Aligned_cols=46 Identities=22% Similarity=0.190 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHhhccccccccccccccc--CCCCCHHHHHHHHHHh
Q psy10277 48 HASIRRGYEVYKNVCAACHSARFICYRNLV--GVSHTEAEAKREAEEI 93 (305)
Q Consensus 48 ~asLqRG~qVf~~vCaaCHSlky~~y~~l~--~~g~t~~evk~~a~~~ 93 (305)
.+++++|.+.|.+.|++||+..-.+...-. =.|.+++++..-..+|
T Consensus 21 ~~~a~~G~~~~~~~Ca~CHG~~g~~~~~~~P~Lagq~~~yl~~~L~a~ 68 (121)
T COG2863 21 AADAALGKALAAQSCAACHGADGNSPAPGYPKLAGQSEAYLEKQLKAY 68 (121)
T ss_pred hhhHHHHHHhhcchhhhccCCCCCCccCCCCCcCCCCHHHHHHHHHHH
Confidence 457899999999999999999876622221 1377888876655555
No 31
>PRK14486 putative bifunctional cbb3-type cytochrome c oxidase subunit II/cytochrome c; Provisional
Probab=94.10 E-value=0.031 Score=53.84 Aligned_cols=25 Identities=40% Similarity=0.723 Sum_probs=21.8
Q ss_pred CCHHHHHHHHHHHHHhhcccccccc
Q psy10277 46 FDHASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 46 ~D~asLqRG~qVf~~vCaaCHSlky 70 (305)
.|.+++.||.++|.+.|++||+..-
T Consensus 210 ~~~~~~~~G~~ly~~~Ca~CHg~~g 234 (294)
T PRK14486 210 TDVAAIAKGKALYDANCAACHGDEA 234 (294)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 4678899999999999999999643
No 32
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=93.51 E-value=0.036 Score=52.52 Aligned_cols=25 Identities=28% Similarity=0.580 Sum_probs=21.1
Q ss_pred CCHHHHHHHHHHHHHhhcccccccc
Q psy10277 46 FDHASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 46 ~D~asLqRG~qVf~~vCaaCHSlky 70 (305)
.|.+.++||.++|.+.|++||+..-
T Consensus 198 ~~~~~~~~G~~lf~~~Ca~CHG~~G 222 (285)
T TIGR00782 198 KDEALAAKGQELFADNCTTCHGEDG 222 (285)
T ss_pred cchhHHHHHHHHHhccchhhCCCCC
Confidence 4566789999999999999999643
No 33
>COG3474 Cytochrome c2 [Energy production and conversion]
Probab=91.59 E-value=0.08 Score=46.12 Aligned_cols=21 Identities=38% Similarity=0.735 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSlky 70 (305)
+.+..|.+||.. |.+||++.-
T Consensus 29 ~da~~G~~vFkk-C~~CH~i~~ 49 (135)
T COG3474 29 GDAAAGEKVFKK-CQACHSIEK 49 (135)
T ss_pred ccHHHhHHHHHH-HHHhhcccc
Confidence 568899999999 999999865
No 34
>COG3258 Cytochrome c [Energy production and conversion]
Probab=89.70 E-value=0.12 Score=49.72 Aligned_cols=22 Identities=45% Similarity=0.733 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSlky 70 (305)
++..||.++|++.|+.||+..-
T Consensus 160 adp~rG~kly~eqCa~CHg~~G 181 (293)
T COG3258 160 ADPVRGKKLYAEQCAACHGADG 181 (293)
T ss_pred CCchhHHHHHHHHHHHhcCCCC
Confidence 5678999999999999999754
No 35
>COG4654 Cytochrome c551/c552 [Energy production and conversion]
Probab=88.14 E-value=1.1 Score=37.77 Aligned_cols=19 Identities=26% Similarity=0.765 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHh-hcccccc
Q psy10277 50 SIRRGYEVYKNV-CAACHSA 68 (305)
Q Consensus 50 sLqRG~qVf~~v-CaaCHSl 68 (305)
+.++|..+|.|+ |.+||-.
T Consensus 22 ~a~~~~aif~qkgC~~CHq~ 41 (110)
T COG4654 22 DAEDGKAIFSQKGCVACHQP 41 (110)
T ss_pred chhhhHHHHHhccchhhccc
Confidence 457889999886 9999985
No 36
>PF06537 DUF1111: Protein of unknown function (DUF1111); InterPro: IPR010538 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=85.31 E-value=0.54 Score=48.71 Aligned_cols=27 Identities=26% Similarity=0.778 Sum_probs=23.2
Q ss_pred CCHHHHHHHHHHHHHh-hcccccccccc
Q psy10277 46 FDHASIRRGYEVYKNV-CAACHSARFIC 72 (305)
Q Consensus 46 ~D~asLqRG~qVf~~v-CaaCHSlky~~ 72 (305)
.|..+++||.++|.+. |++||.-++..
T Consensus 358 ~~~~~v~~G~~lF~~~GCa~CH~p~~~T 385 (499)
T PF06537_consen 358 LDDPQVLRGKQLFYQIGCASCHTPSLTT 385 (499)
T ss_pred CCcHHHHHHHHHHHhcCCcccCCCccCC
Confidence 4678899999999985 99999988744
No 37
>PF02433 FixO: Cytochrome C oxidase, mono-heme subunit/FixO; InterPro: IPR003468 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO) []. Cytochrome cbb3 oxidases are required both to support symbiotic nitrogen fixation, whilst ensuring that the oxygen-labile nitrogenase is not compromised. Cytochrome cbb3 oxidases consist of four subunits: FixN (or CcoN), FixO (or CcoO), FixP (or CcoP) and FixQ (or CcoQ). The catalytic core is comprised of subunits FixN, FixO and FixP, where FixN acts as the catalytic subunit, and Fix O and FixP are membrane-bound mono- and di-haem cytochromes c, respectively. The FixQ subunit protects the core complex in the presence of oxygen from proteolytic degradation []. This entry represents the mono-haem FixO subunit.
Probab=83.64 E-value=1.5 Score=41.23 Aligned_cols=21 Identities=29% Similarity=0.491 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHH-hhccccccc
Q psy10277 49 ASIRRGYEVYKN-VCAACHSAR 69 (305)
Q Consensus 49 asLqRG~qVf~~-vCaaCHSlk 69 (305)
+...+|.++|.. -|..|||-.
T Consensus 48 ~lel~GR~iYi~eGC~~CHSQ~ 69 (226)
T PF02433_consen 48 PLELAGRDIYIREGCYYCHSQM 69 (226)
T ss_pred HHHHhHHHHHHHcCchhccccc
Confidence 356799999966 699999953
No 38
>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG. Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.
Probab=82.65 E-value=0.56 Score=45.18 Aligned_cols=23 Identities=43% Similarity=0.849 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHH--Hhhcccccccc
Q psy10277 48 HASIRRGYEVYK--NVCAACHSARF 70 (305)
Q Consensus 48 ~asLqRG~qVf~--~vCaaCHSlky 70 (305)
.++-+||+++|. ..|++||+-..
T Consensus 156 s~~e~~G~~LF~~k~~C~~CH~g~~ 180 (291)
T TIGR03791 156 GADAKRGFALFKGKAGCAACHSSWR 180 (291)
T ss_pred CHHHHHHHHHhcCCCCCCCCCCCCC
Confidence 467899999997 46999998643
No 39
>PRK14485 putative bifunctional cbb3-type cytochrome c oxidase subunit I/II; Provisional
Probab=76.99 E-value=6 Score=42.86 Aligned_cols=19 Identities=32% Similarity=0.602 Sum_probs=15.7
Q ss_pred HHHHHHHHHH-hhccccccc
Q psy10277 51 IRRGYEVYKN-VCAACHSAR 69 (305)
Q Consensus 51 LqRG~qVf~~-vCaaCHSlk 69 (305)
-.+|.++|.. =|..|||-.
T Consensus 537 ~~~Gr~iyi~egC~~CHsq~ 556 (712)
T PRK14485 537 ELEGRDLYIREGCYNCHSQM 556 (712)
T ss_pred HHhhHHHHHHcCcccccccc
Confidence 4699999966 699999954
No 40
>PF01322 Cytochrom_C_2: Cytochrome C'; InterPro: IPR002321 Cytochromes c (cytC) can be defined as electron-transfer proteins having one or several haem c groups, bound to the protein by one or, more generally, two thioether bonds involving sulphydryl groups of cysteine residues. The fifth haem iron ligand is always provided by a histidine residue. CytC possess a wide range of properties and function in a large number of different redox processes. Ambler [] recognised four classes of cytC. Class II includes the high-spin cytC' and a number of low-spin cytochromes, e.g. cyt c-556. The haem-attachment site is close to the C terminus. The cytC' are capable of binding such ligands as CO, NO or CN(-), albeit with rate and equilibrium constants 100 to 1,000,000-fold smaller than other high-spin haemoproteins []. This, coupled with its relatively low redox potential, makes it unlikely that cytC' is a terminal oxidase. Thus cytC' probably functions as an electron transfer protein []. The 3D structures of a number of cytC' have been determined. The molecule usually exists as a dimer, each monomer folding as a four-alpha-helix bundle incorporating a covalently-bound haem group at the core []. The Chromatium vinosum cytC' exhibits dimer dissociation upon ligand binding [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0020037 heme binding, 0005746 mitochondrial respiratory chain; PDB: 1BBH_A 2J9B_B 2J8W_A 1JAF_B 3ZTM_A 2XLD_A 2XL6_A 1E86_A 2YLD_A 2YKZ_A ....
Probab=76.53 E-value=1.6 Score=36.01 Aligned_cols=21 Identities=33% Similarity=0.705 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHhhccccc
Q psy10277 47 DHASIRRGYEVYKNVCAACHS 67 (305)
Q Consensus 47 D~asLqRG~qVf~~vCaaCHS 67 (305)
|..++++.+.-....|.+||+
T Consensus 99 d~~~~~~a~~~v~~~C~aCH~ 119 (122)
T PF01322_consen 99 DLAAIKAAFGEVGKSCKACHD 119 (122)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 667899999999999999997
No 41
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=72.46 E-value=2.9 Score=37.36 Aligned_cols=27 Identities=26% Similarity=0.376 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Q psy10277 265 YALQAVGLMTILTAALFYLKRYKFSSL 291 (305)
Q Consensus 265 ~~~~~l~fl~il~~l~y~lkr~~W~~i 291 (305)
|..|.+.+++.|++|.|+++|..|+.|
T Consensus 30 ~~~q~~~~lI~F~iL~~ll~k~l~~PI 56 (181)
T PRK13454 30 FPNQIFWLLVTLVAIYFVLTRVALPRI 56 (181)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778889999999999999999987
No 42
>PF09086 DUF1924: Domain of unknown function (DUF1924); InterPro: IPR015170 This entry is found in a set of bacterial proteins, including Cytochrome c-type protein. It is functionally uncharacterised. ; PDB: 1DW2_C 1DW1_A 1DW3_C 1DW0_A 1OAE_A 1GU2_B 1E8E_A.
Probab=70.44 E-value=2 Score=35.76 Aligned_cols=24 Identities=33% Similarity=0.582 Sum_probs=16.3
Q ss_pred CHHHHHHHHHHHHH-h--------hcccccccc
Q psy10277 47 DHASIRRGYEVYKN-V--------CAACHSARF 70 (305)
Q Consensus 47 D~asLqRG~qVf~~-v--------CaaCHSlky 70 (305)
-..|..||.++|.. . |++||+...
T Consensus 7 ~~~sa~rG~~~f~~~~~~~g~~~sCasCH~~~p 39 (98)
T PF09086_consen 7 AGFSAARGEAFFTSKHTGNGKEWSCASCHTADP 39 (98)
T ss_dssp SS--HHHHHHHHH--ECCTTCECSCHHHH-SST
T ss_pred CCCCHHHHHHHHHccCCCCCCCCCcccccCCCc
Confidence 34578999999965 3 999999754
No 43
>PF10643 Cytochrome-c551: Photosystem P840 reaction-centre cytochrome c-551; InterPro: IPR019604 A photosynthetic reaction-centre complex is found in certain green sulphur bacteria such as Chlorobium vibrioforme, which are anaerobic photo-auto-trophic organisms. The primary electron donor is P840, a probable B-Chl a dimer, and the primary electron acceptor is a B-Chl monomer. Also on the donor side c-type cytochromes are known to function as electron donors to photo-oxidised P840. This family is thus the secondary endogenous donor of the photosynthetic reaction-centre complex and is a membrane-bound cytochrome containing a single haem group. ; PDB: 3A9F_A.
Probab=66.12 E-value=3.6 Score=38.69 Aligned_cols=41 Identities=22% Similarity=0.467 Sum_probs=24.9
Q ss_pred CCHHHHHHHHHHHHHhhccccccccc--ccccccCCCCCHHHHHHH
Q psy10277 46 FDHASIRRGYEVYKNVCAACHSARFI--CYRNLVGVSHTEAEAKRE 89 (305)
Q Consensus 46 ~D~asLqRG~qVf~~vCaaCHSlky~--~y~~l~~~g~t~~evk~~ 89 (305)
+|.++. .++|...|..||+++++ ++|.....|-.+.-|+.+
T Consensus 167 fdf~AA---k~L~~~KCNkCHTl~SVed~lrkYkKkGkid~iVkrM 209 (233)
T PF10643_consen 167 FDFAAA---KALFDRKCNKCHTLKSVEDALRKYKKKGKIDKIVKRM 209 (233)
T ss_dssp --HHHH---HHHHHHHTTSSS-SHHHHHHHHHTTTTT-HHHHHHHH
T ss_pred hhHHHH---HHHHHhhccccccHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 555544 36999999999999985 345445555555555554
No 44
>COG3488 Predicted thiol oxidoreductase [Energy production and conversion]
Probab=65.63 E-value=3.1 Score=41.83 Aligned_cols=31 Identities=23% Similarity=0.629 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHH-hhcccccccccccccccC
Q psy10277 48 HASIRRGYEVYKN-VCAACHSARFICYRNLVG 78 (305)
Q Consensus 48 ~asLqRG~qVf~~-vCaaCHSlky~~y~~l~~ 78 (305)
-.++++|.|+|.+ -|.+||.-|++.=|+-.+
T Consensus 348 dp~vl~GkkLF~~agC~aCH~pkfvTrrdA~~ 379 (481)
T COG3488 348 DPQVLAGKKLFAQAGCVACHTPKFVTRRDAED 379 (481)
T ss_pred ChhhhhhhHHHHhcCchhccCCceeccccCCC
Confidence 3589999999988 699999999987665543
No 45
>PF03150 CCP_MauG: Di-haem cytochrome c peroxidase; InterPro: IPR004852 This is a group of distinct cytochrome c peroxidases (CCPs) that contain two haem groups. Similar to other cytochrome c peroxidases, they reduce hydrogen peroxide to water using c-type haem as an oxidizable substrate. However, since they possess two, instead of one, haem prosthetic groups, bacterial CCPs reduce hydrogen peroxide without the need to generate semi-stable free radicals. The two haem groups have significantly different redox potentials. The high potential (+320 mV) haem feeds electrons from electron shuttle proteins to the low potential (-330 mV) haem, where peroxide is reduced (indeed, the low potential site is known as the peroxidatic site) []. The CCP protein itself is structured into two domains, each containing one c-type haem group, with a calcium-binding site at the domain interface. This family also includes MauG proteins, whose similarity to di-haem CCP was previously recognised [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IQC_A 2VHD_B 1EB7_A 3RN0_A 3SVW_B 3RMZ_A 3SJL_B 3PXW_A 3SLE_B 3PXS_A ....
Probab=61.90 E-value=4.3 Score=35.71 Aligned_cols=23 Identities=26% Similarity=0.608 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHH---------hhcccccccc
Q psy10277 48 HASIRRGYEVYKN---------VCAACHSARF 70 (305)
Q Consensus 48 ~asLqRG~qVf~~---------vCaaCHSlky 70 (305)
++.++-|.++|-. .|++||....
T Consensus 2 ~~~~~LGk~LF~D~~LS~~~~~SCasCH~~~~ 33 (159)
T PF03150_consen 2 PAKAALGKKLFFDPRLSGDGTVSCASCHDPEH 33 (159)
T ss_dssp HHHHHHHHHHHT-GGGSTTSS--HHHHS-TTT
T ss_pred HHHHHHHHHHhCCCccCCCcCcCchhhCCCcc
Confidence 3567889999976 7999999764
No 46
>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC. This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.
Probab=61.26 E-value=4.7 Score=40.65 Aligned_cols=23 Identities=17% Similarity=0.413 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHhhcccccccc
Q psy10277 48 HASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 48 ~asLqRG~qVf~~vCaaCHSlky 70 (305)
++-.+.|.++|.+.|+.||++.-
T Consensus 318 ~~lw~~a~~ly~~~Cs~CH~~~~ 340 (386)
T TIGR02162 318 KPVWAYAKSMYNGACSMCHVQPE 340 (386)
T ss_pred HHHHHHHHHHHhcchhhhcCCCC
Confidence 34468999999999999999855
No 47
>KOG3453|consensus
Probab=60.12 E-value=2.4 Score=35.90 Aligned_cols=27 Identities=19% Similarity=0.584 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhhcccccccccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARFICYRNL 76 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky~~y~~l 76 (305)
..++|.++|.+-|..||+.+-..++..
T Consensus 8 d~~~g~~~f~~rc~qch~~~~~~~~k~ 34 (110)
T KOG3453|consen 8 DVEKGKKIFPQRCAQCHTVEKGGFHKT 34 (110)
T ss_pred ccccccccceeeccccccccCCccccc
Confidence 468899999999999999998777666
No 48
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=59.11 E-value=5.1 Score=35.57 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q psy10277 263 LLYALQAVGLMTILTAALFYLKRYKFSSLKTRK 295 (305)
Q Consensus 263 ~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~ 295 (305)
-+.+.|.+-|++++.+|.|++++-+=+-+..|+
T Consensus 25 ~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~ 57 (184)
T CHL00019 25 DILETNLINLSVVLGVLIYFGKGVLSDLLDNRK 57 (184)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 466667787777777777777665554444444
No 49
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=57.92 E-value=7.7 Score=34.24 Aligned_cols=31 Identities=6% Similarity=0.051 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q psy10277 265 YALQAVGLMTILTAALFYLKRYKFSSLKTRK 295 (305)
Q Consensus 265 ~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~ 295 (305)
..+|++.|++++.+|.+++.+-+.+-+..|+
T Consensus 21 ~~~~iInFliL~~lL~~~l~~pi~~~l~~R~ 51 (173)
T PRK13453 21 VIVTVLTFIVLLALLKKFAWGPLKDVMDKRE 51 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666655555555554444443
No 50
>COG3245 CycB Cytochrome c5 [Energy production and conversion]
Probab=57.09 E-value=3.9 Score=35.32 Aligned_cols=19 Identities=42% Similarity=0.889 Sum_probs=16.1
Q ss_pred HHHHHHHHHhhcccccccc
Q psy10277 52 RRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 52 qRG~qVf~~vCaaCHSlky 70 (305)
-+|.+||...|..||+...
T Consensus 48 ~~Gk~vy~~tC~~CHa~~~ 66 (126)
T COG3245 48 PEGKKVYGATCQACHAAGL 66 (126)
T ss_pred CccchhHhhhhhHhccCCC
Confidence 3489999999999999744
No 51
>PRK15032 trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional
Probab=56.74 E-value=5.2 Score=40.38 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhhcccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky 70 (305)
--+.|.++|..+|+.||++--
T Consensus 317 lw~ya~~ly~~~Cs~CHa~~~ 337 (390)
T PRK15032 317 IWAYADSLYNGTCNQCHGAPE 337 (390)
T ss_pred HHHHHHHHHhccchhhcCCCC
Confidence 358899999999999999854
No 52
>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]
Probab=54.63 E-value=6.5 Score=39.47 Aligned_cols=26 Identities=31% Similarity=0.589 Sum_probs=20.5
Q ss_pred HHHHHHHHHHH--Hhhcccccccccccc
Q psy10277 49 ASIRRGYEVYK--NVCAACHSARFICYR 74 (305)
Q Consensus 49 asLqRG~qVf~--~vCaaCHSlky~~y~ 74 (305)
.+=+||.++|. ..|++||...-++.+
T Consensus 218 ~~e~rGl~LF~~k~~C~aCH~g~~~gg~ 245 (364)
T COG1858 218 EQEKRGLALFKGKANCAACHNGINLGGN 245 (364)
T ss_pred HHHHHHHHHHccCCCchhhccCccCCCC
Confidence 45689999998 489999998765443
No 53
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=53.02 E-value=8.7 Score=37.64 Aligned_cols=33 Identities=12% Similarity=0.352 Sum_probs=27.9
Q ss_pred HHhhcccccccccccccccCCCCCHHHHHHHHHHh
Q psy10277 59 KNVCAACHSARFICYRNLVGVSHTEAEAKREAEEI 93 (305)
Q Consensus 59 ~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~ 93 (305)
..+|..||.+++ |+.+.+..+++++..++..++
T Consensus 28 ~~~C~RC~~l~h--y~~~~~~~~~~e~f~~~l~~~ 60 (360)
T TIGR03597 28 EVYCQRCFRLKH--YNEIQDVELNDDDFLNLLNSL 60 (360)
T ss_pred Ceeecchhhhhc--cCccccCCCCHHHHHHHHhhc
Confidence 358999999987 898888889999998887766
No 54
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=52.20 E-value=8.8 Score=35.21 Aligned_cols=25 Identities=12% Similarity=0.178 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccC
Q psy10277 267 LQAVGLMTILTAALFYLKRYKFSSL 291 (305)
Q Consensus 267 ~~~l~fl~il~~l~y~lkr~~W~~i 291 (305)
-|.+..++.|++|.++++|..|+.|
T Consensus 54 ~~l~w~~I~FliL~~lL~k~~~~pI 78 (204)
T PRK09174 54 SQLLWLAITFGLFYLFMSRVILPRI 78 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446667777777788888888776
No 55
>PRK13796 GTPase YqeH; Provisional
Probab=51.05 E-value=10 Score=37.27 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=26.3
Q ss_pred HhhcccccccccccccccCCCCCHHHHHHHHHHh
Q psy10277 60 NVCAACHSARFICYRNLVGVSHTEAEAKREAEEI 93 (305)
Q Consensus 60 ~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~ 93 (305)
-+|..||.+++ |+.+.+..+++++.+++-++.
T Consensus 35 ~~C~RC~~l~h--y~~~~~~~~~~~~~~~~l~~i 66 (365)
T PRK13796 35 VYCQRCFRLKH--YNEIQDVSLTDDDFLKLLNGI 66 (365)
T ss_pred eEchhhhhhhc--cCcccCCCCCHHHHHHHHHhh
Confidence 47999999987 999988889999887765543
No 56
>PF09626 DHC: Dihaem cytochrome c; InterPro: IPR018588 Dihaem cytochrome c (DHC) is a soluble c-type cytochrome that folds into two distinct domains, each binding a single haem group and connected by a small linker region. Despite little sequence similarity, the N-terminal domain (residues 12-75) is a class I type cytochrome c, that binds one of the haems, but the domain surrounding the other haem is structurally unique. DHC binds electrostatically to an oxygen-binding protein, sphaeroides haem protein (SHP), as a component of a conserved electron transfer pathway. DHC acts as the physiological electron donor for SHP during phototrophic growth []. In certain species DHC is found upstream of IPR011577 from INTERPRO. ; PDB: 2FWT_A 2FW5_A.
Probab=47.42 E-value=8.1 Score=32.95 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=13.0
Q ss_pred HHHhhcccccccccccccccCCC-CCHHHHHHH
Q psy10277 58 YKNVCAACHSARFICYRNLVGVS-HTEAEAKRE 89 (305)
Q Consensus 58 f~~vCaaCHSlky~~y~~l~~~g-~t~~evk~~ 89 (305)
|.+.|++||-.-. .+ ++.+..+.|
T Consensus 1 Y~~eCgsCH~ayp--------P~~Lpa~sW~~i 25 (120)
T PF09626_consen 1 YKEECGSCHMAYP--------PGLLPAESWQKI 25 (120)
T ss_dssp -HHHTTSSS------------GGGS-HHHHHHH
T ss_pred CccchhhccCcCC--------cccCCHHHHHHH
Confidence 6889999997522 22 566666665
No 57
>PF09098 Dehyd-heme_bind: Quinohemoprotein amine dehydrogenase A, alpha subunit, haem binding; InterPro: IPR015182 Quinohemoprotein amine dehydrogenases (QHNDH) 1.4.99 from EC) are enzymes produced in the periplasmic space of certain Gram-negative bacteria, such as Paracoccus denitrificans and Pseudomonas putida, in response to primary amines, including n-butylamine and benzylamine. QHNDH catalyses the oxidative deamination of a wide range of aliphatic and aromatic amines through formation of a Schiff-base intermediate involving one of the quinone O atoms []. Catalysis requires the presence of a novel redox cofactor, cysteine tryptophylquinone (CTQ). CTQ is derived from the post-translational modification of specific residues, which involves the oxidation of the indole ring of a tryptophan residue to form tryptophylquinone, followed by covalent cross-linking with a cysteine residue []. There is one CTQ per subunit in QHNDH. In addition to CTQ, two haem c cofactors are present in QHNDH that mediate the transfer of the substrate-derived electrons from CTQ to an external electron acceptor, cytochrome c-550 [, ]. QHNDH is a heterotrimer of alpha, beta and gamma subunits. The alpha and beta subunits contain signal peptides necessary for the translocation of QHNDH to the periplasm. The alpha subunit is composed of four domains - domain 1 forming a dihaem cytochrome, and domains 2-4 forming antiparallel beta-barrel structures; the beta subunit is a 7-bladed beta-propeller that provides part of the active site; and the small, catalytic gamma subunit contains the novel cross-linked CTQ cofactor, in addition to additional thioester cross-links between Cys and Asp/Glu residues that encage CTQ. The gamma subunit assumes a globular secondary structure with two short alpha-helices having many turns and bends []. This entry represents the dihaem cytochrome c domain of the QHNDH alpha subunit. The domain contain two cysteine residues that are involved in thioether linkages to haem []. ; PDB: 1PBY_A 1JJU_A 1JMZ_A 1JMX_A.
Probab=45.06 E-value=11 Score=34.15 Aligned_cols=33 Identities=24% Similarity=0.371 Sum_probs=20.3
Q ss_pred HHHHHHHHhhcccccccccccccccCCCCCHHHHHHHH
Q psy10277 53 RGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREA 90 (305)
Q Consensus 53 RG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a 90 (305)
-+-+.+.+-|+.|||.-.+.-.| =|++|.+.+.
T Consensus 91 ~~~e~~~~~C~rCHs~aR~~lQr-----Rt~~eW~~lv 123 (167)
T PF09098_consen 91 FPNEEITQMCARCHSGARVALQR-----RTAEEWEKLV 123 (167)
T ss_dssp -SCHHHHHHHSSSS-THHHHTEE-----E-HHHHHHHH
T ss_pred ccchHHHHHHHHhhhhhHHHHhh-----CCHHHHHHHH
Confidence 35568999999999975533222 2677777653
No 58
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=42.48 E-value=25 Score=34.34 Aligned_cols=69 Identities=23% Similarity=0.275 Sum_probs=35.4
Q ss_pred CCCcccCCCCCCCccch-------------hhcccc--------cccccCCCChh-----hHhhhHHHHHHHHhhhCCCc
Q psy10277 185 REGLYFNPYFLGGAIGM-------------AQALYN--------EIIEYEDGTPA-----TQSQLAKDVSTFLKWCGEPE 238 (305)
Q Consensus 185 ~~g~~yN~~fpg~~i~M-------------P~pL~~--------~~v~y~dGTpa-----t~~Q~a~DVvaFL~w~aeP~ 238 (305)
.+|.+||..||...+-. |..+.+ +.|-+..++|. -.+|..+|+.+||.-=|+
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~-- 171 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAE-- 171 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred cCchhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhh--
Confidence 36888999998644322 555554 12333334443 356999999999986331
Q ss_pred HHHHHhhceeEeccccccc
Q psy10277 239 HDTRKRMAIKCMTTLGVLA 257 (305)
Q Consensus 239 ~~~Rk~~G~~v~~~~~~~~ 257 (305)
|=+.=|.-|++.+|-=-
T Consensus 172 --ELv~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 172 --ELVPGGRMVLTFLGRDE 188 (334)
T ss_dssp --HEEEEEEEEEEEEE-ST
T ss_pred --eeccCcEEEEEEeeccc
Confidence 22223666666666543
No 59
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=40.56 E-value=20 Score=30.98 Aligned_cols=23 Identities=9% Similarity=0.030 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC
Q psy10277 269 AVGLMTILTAALFYLKRYKFSSL 291 (305)
Q Consensus 269 ~l~fl~il~~l~y~lkr~~W~~i 291 (305)
.+..++.|.+++|+|+|.+|++|
T Consensus 25 ~~~~~inFliL~~lL~k~l~~Pi 47 (156)
T CHL00118 25 LPLMALQFLLLMVLLNIILYKPL 47 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666777788888999999887
No 60
>PF07635 PSCyt1: Planctomycete cytochrome C; InterPro: IPR011429 These proteins share a region of homology at their N terminus that contains the C-{CPWHF}-{CPWR}-C-H-{CFYW} motif typical of cytochrome c.
Probab=38.46 E-value=12 Score=27.63 Aligned_cols=9 Identities=33% Similarity=0.921 Sum_probs=7.8
Q ss_pred hcccccccc
Q psy10277 62 CAACHSARF 70 (305)
Q Consensus 62 CaaCHSlky 70 (305)
|.+||+-+-
T Consensus 1 C~~CHg~~~ 9 (59)
T PF07635_consen 1 CFSCHGPDK 9 (59)
T ss_pred CcCCCCCCC
Confidence 999999765
No 61
>COG3183 Predicted restriction endonuclease [Defense mechanisms]
Probab=37.26 E-value=14 Score=35.72 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=20.3
Q ss_pred HHHhhcccccccccccccccCCCCCHHHHHHH
Q psy10277 58 YKNVCAACHSARFICYRNLVGVSHTEAEAKRE 89 (305)
Q Consensus 58 f~~vCaaCHSlky~~y~~l~~~g~t~~evk~~ 89 (305)
+.-+|++||.|-+.|=++ .+|-+|.|.+
T Consensus 240 L~plCpNCH~mvHrr~~~----~lS~~elk~l 267 (272)
T COG3183 240 LAPLCPNCHKMVHRRRDR----NLSVEELKIL 267 (272)
T ss_pred hhhcCccHHHHHhccCCc----CCCHHHHHHH
Confidence 457899999997754433 4778887765
No 62
>PF07208 DUF1414: Protein of unknown function (DUF1414); InterPro: IPR009857 This family consists of several hypothetical bacterial proteins of around 70 residues in length. Members of this family are often referred to as YejL. The function of this family is unknown.; PDB: 2JPQ_A 2JUZ_B 2JUW_B 2QTI_A 2OTA_A 2JR2_A 2JRX_A.
Probab=36.87 E-value=9.1 Score=27.63 Aligned_cols=10 Identities=40% Similarity=0.723 Sum_probs=7.3
Q ss_pred CCCCchhHHh
Q psy10277 134 YPPDLSYITM 143 (305)
Q Consensus 134 ~PPDLSliar 143 (305)
.|+|||||+.
T Consensus 3 Ap~DLsLMvL 12 (44)
T PF07208_consen 3 APTDLSLMVL 12 (44)
T ss_dssp --HHHHHHHH
T ss_pred CCchhHHHHH
Confidence 6999999986
No 63
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=36.07 E-value=32 Score=31.42 Aligned_cols=13 Identities=38% Similarity=0.447 Sum_probs=10.1
Q ss_pred HHHHHHhhhCCCc
Q psy10277 226 DVSTFLKWCGEPE 238 (305)
Q Consensus 226 DVvaFL~w~aeP~ 238 (305)
=++.||..|.+|-
T Consensus 20 ~~~~~~~~~~~~~ 32 (205)
T PRK06231 20 IISLFLVSCTENV 32 (205)
T ss_pred HHHHHHHHccCCh
Confidence 3678889998883
No 64
>PF13703 PepSY_TM_2: PepSY-associated TM helix
Probab=33.46 E-value=91 Score=24.32 Aligned_cols=39 Identities=18% Similarity=0.344 Sum_probs=21.1
Q ss_pred ccch-hhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q psy10277 257 AGGA-GALLYALQAVGLMTILTAALFYLKRYKFSSLKTRK 295 (305)
Q Consensus 257 ~~~~-~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~ 295 (305)
.|.. |-.+-++-+++++++...=+|+.-++.||...+-|
T Consensus 11 lg~~~G~~iv~~~al~~l~~~isGl~l~~p~~~~~~~~~r 50 (88)
T PF13703_consen 11 LGGTWGRWIVGILALLLLLLLISGLYLWWPRRWRWFFSLR 50 (88)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhHHhcCcccccc
Confidence 4555 66666666666655544444544445555554333
No 65
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=32.77 E-value=29 Score=30.45 Aligned_cols=32 Identities=13% Similarity=0.282 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q psy10277 264 LYALQAVGLMTILTAALFYLKRYKFSSLKTRK 295 (305)
Q Consensus 264 ~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~ 295 (305)
++..|++-|+++|.+|.|+++|-+=+-+..|+
T Consensus 21 ~~~~~iinflIl~~lL~~fl~kpI~~~l~~R~ 52 (174)
T PRK07352 21 LLETNLINLAIVIGLLYYFGRGFLGKILEERR 52 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 46678888888888888888776655444443
No 66
>COG1858 MauG Cytochrome c peroxidase [Inorganic ion transport and metabolism]
Probab=32.56 E-value=23 Score=35.61 Aligned_cols=106 Identities=21% Similarity=0.255 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHH---------hhcccccccccccccc-cCCCCCHHHHH-HHHHHhcccCCCCcCCCCc--cCCCC
Q psy10277 45 SFDHASIRRGYEVYKN---------VCAACHSARFICYRNL-VGVSHTEAEAK-REAEEIMVEDGPNEKGEMF--KRPGK 111 (305)
Q Consensus 45 ~~D~asLqRG~qVf~~---------vCaaCHSlky~~y~~l-~~~g~t~~evk-~~a~~~~v~dgp~~~g~~~--~r~~~ 111 (305)
..|++.++=|.++|-. .|++||.+..--=.++ ..+|.....-. ..+- .+.. +.-.|.-| -|...
T Consensus 56 ~~~~~~~aLGk~LffDprLS~sg~~SC~sCH~~~~g~~d~~~~siG~~~~~~~~rnaP--t~~n-~~F~ggqFWDGRA~~ 132 (364)
T COG1858 56 PTDPAKAALGKKLFFDPRLSASGTISCATCHNLARGGVDGLPTSIGVGWAPGPYRNAP--TVFN-SVFNGGQFWDGRADS 132 (364)
T ss_pred CCchHHHHHHHHhhcCcccCCCCCcCchhhcCccccCCcccccccCCCCCcCcccCCc--hhcc-ccccccccCCCCccc
Confidence 3688999999999964 5999999987444444 33443322221 1000 0000 00011111 25566
Q ss_pred CCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcCCC
Q psy10277 112 LSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMD 161 (305)
Q Consensus 112 ~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f~~ 161 (305)
+.|.+..|.-|...- | .+|+.-+...-+ .++|.-.|..-|..
T Consensus 133 l~~QA~gP~~np~EM-----a-~~~~~~v~~l~~--~p~y~~~F~~vfg~ 174 (364)
T COG1858 133 LEEQAGGPLLNPVEM-----A-NSPERAVTKLNS--DPDYVDAFRAVFGA 174 (364)
T ss_pred HHHHhcCCCCChhhh-----C-CCHHHHHHHHhc--ChHHHHHHHHHcCc
Confidence 777777777776542 1 456666665544 77888888887754
No 67
>PF12669 P12: Virus attachment protein p12 family
Probab=32.48 E-value=32 Score=25.73 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCc
Q psy10277 270 VGLMTILTAALFYLKRYKFSSLKT 293 (305)
Q Consensus 270 l~fl~il~~l~y~lkr~~W~~i~~ 293 (305)
|+.++|+.+++|.+-|++||+-|+
T Consensus 3 II~~Ii~~~~~~v~~r~~~k~~K~ 26 (58)
T PF12669_consen 3 IIGIIILAAVAYVAIRKFIKDKKK 26 (58)
T ss_pred eHHHHHHHHHHHHHHHHHHHHhhc
Confidence 455666666667677888887543
No 68
>PHA03171 UL37 tegument protein; Provisional
Probab=32.23 E-value=19 Score=36.99 Aligned_cols=58 Identities=19% Similarity=0.333 Sum_probs=42.6
Q ss_pred hHhhhHH-HHHHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy10277 219 TQSQLAK-DVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLK 292 (305)
Q Consensus 219 t~~Q~a~-DVvaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~ 292 (305)
++++|.+ -.++||.- .++.+|-|-|+.|-.||+|+ ++.|.+|.++++.++|.+-+|..
T Consensus 422 k~seMw~nRr~afLra-------~sraLGhwaLlsifsVaaGs---------iaLLsLFCilli~~RRdLleDfR 480 (499)
T PHA03171 422 KLSIMWKNRRSAFLRA-------KSRALGHWALISICSAAAGS---------IAILSLFCILLFGLRRDLIEDFR 480 (499)
T ss_pred HHHHHHhcchHHhhhc-------chhhccchHHHHHHHHHHhH---------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555554 23455543 45788888877777777665 77888999999999999999873
No 69
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=31.88 E-value=61 Score=23.52 Aligned_cols=26 Identities=31% Similarity=0.612 Sum_probs=20.4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHH
Q psy10277 258 GGAGALLYALQAVGLMTILTAALFYL 283 (305)
Q Consensus 258 ~~~~~~~~~~~~l~fl~il~~l~y~l 283 (305)
|+-...-+.|-++++|.++.+++|+-
T Consensus 19 g~~SL~HF~LT~~gll~~lv~la~l~ 44 (45)
T PF11688_consen 19 GGTSLFHFGLTAVGLLGFLVGLAYLT 44 (45)
T ss_pred cCcchhHHHHHHHHHHHHHHHHHHhc
Confidence 34445567888899999999999874
No 70
>PRK13689 hypothetical protein; Provisional
Probab=31.73 E-value=23 Score=28.29 Aligned_cols=21 Identities=33% Similarity=0.529 Sum_probs=14.6
Q ss_pred CCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277 132 GAYPPDLSYITMARHGAEDYVFHLLT 157 (305)
Q Consensus 132 Ga~PPDLSliaraR~~G~dyIYs~L~ 157 (305)
-..|+|||||+.. +-+-++|.
T Consensus 26 H~Ap~DLSLMvLG-----N~vTnlln 46 (75)
T PRK13689 26 HKAPTDLSLMVLG-----NMVTNLLN 46 (75)
T ss_pred cCCCccHHHHHHH-----HHHHHHHh
Confidence 5679999999852 44545554
No 71
>PF11845 DUF3365: Protein of unknown function (DUF3365); InterPro: IPR021796 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 198 to 657 amino acids in length.
Probab=29.71 E-value=18 Score=31.41 Aligned_cols=9 Identities=33% Similarity=1.125 Sum_probs=8.0
Q ss_pred HHhhccccc
Q psy10277 59 KNVCAACHS 67 (305)
Q Consensus 59 ~~vCaaCHS 67 (305)
.+.|..||+
T Consensus 146 ~~~CL~CHg 154 (188)
T PF11845_consen 146 EESCLSCHG 154 (188)
T ss_pred chHHHHccC
Confidence 568999999
No 72
>PF12271 Chs3p: Chitin synthase III catalytic subunit; InterPro: IPR022057 This family of proteins is found in eukaryotes. Proteins in this family are typically between 288 and 332 amino acids in length. This family is the catalytic domain of chitin synthase III. Chitin is a major component of fungal cell walls and this enzyme is responsible for its formation.
Probab=28.68 E-value=78 Score=31.09 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=25.4
Q ss_pred cCCCChhhHh-----hh-------HHHHHHHHhhhCCCcHHHHHhhceeE
Q psy10277 212 YEDGTPATQS-----QL-------AKDVSTFLKWCGEPEHDTRKRMAIKC 249 (305)
Q Consensus 212 y~dGTpat~~-----Q~-------a~DVvaFL~w~aeP~~~~Rk~~G~~v 249 (305)
+|||||.++- -. .--+.+|..|++. .+.++.+|++|
T Consensus 143 ~eDGT~~Sl~ll~~ss~~~f~~t~~isl~Tf~~w~~~--~~~~~~~~Lfv 190 (293)
T PF12271_consen 143 WEDGTPLSLWLLRGSSLILFIGTFYISLDTFKSWTGY--LSPTNTIALFV 190 (293)
T ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC--CCCCCcchhHH
Confidence 5899987543 11 2245577899987 66778899888
No 73
>TIGR03791 TTQ_mauG tryptophan tryptophylquinone biosynthesis enzyme MauG. Members of this protein family are the tryptophan tryptophylquinone biosynthesis (TTQ) enzyme MauG, as found in Methylobacterium extorquens and related species. This protein is required to complete the maturation of the TTQ cofactor in the methylamine dehydrogenase light (beta) chain.
Probab=28.28 E-value=32 Score=33.32 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHH---------Hhhcccccccc
Q psy10277 48 HASIRRGYEVYK---------NVCAACHSARF 70 (305)
Q Consensus 48 ~asLqRG~qVf~---------~vCaaCHSlky 70 (305)
.+.++=|.++|- ..|++||....
T Consensus 3 ~~k~~LGk~LFfD~~LS~~~~~SCasCH~p~~ 34 (291)
T TIGR03791 3 IEKAALGKALFFDPRLSRDGSMSCATCHNPGL 34 (291)
T ss_pred HHHHHHHHHHhcCcccCCCCCcCchhcCCccc
Confidence 445666777773 47999999875
No 74
>COG3619 Predicted membrane protein [Function unknown]
Probab=28.15 E-value=66 Score=30.29 Aligned_cols=69 Identities=14% Similarity=0.237 Sum_probs=37.5
Q ss_pred hHhhhHHHHHHHHhhhCCCcHHHHHhhceeEeccc----cccccchhhHHHHHHHHHH---HHHHHHHHHHHHHhhccc
Q psy10277 219 TQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTL----GVLAGGAGALLYALQAVGL---MTILTAALFYLKRYKFSS 290 (305)
Q Consensus 219 t~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v~~~~----~~~~~~~~~~~~~~~~l~f---l~il~~l~y~lkr~~W~~ 290 (305)
+..|+..|+..+|..-. ++.+++........+ |.+.|+.....+..-++.. +++...+++....+.||+
T Consensus 148 nl~~~~~~l~~~l~~k~---~~~~~~~~~~~~~il~f~~GAi~g~ll~~~~g~~al~~~~~~i~~~~~~~~~~~~~~k~ 223 (226)
T COG3619 148 NLKSAGRGLGRYLSGKD---KEKLRDWLIYLSLILSFIVGAICGALLTLFFGLKALWVVAALILAVYLLALFDLRRWKS 223 (226)
T ss_pred hHHHHHHHHHHHHhccc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 56788999999987644 344444444443444 4455555555554444444 444444444444444544
No 75
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=27.88 E-value=75 Score=26.69 Aligned_cols=20 Identities=15% Similarity=0.109 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy10277 270 VGLMTILTAALFYLKRYKFS 289 (305)
Q Consensus 270 l~fl~il~~l~y~lkr~~W~ 289 (305)
+++|++|++++..-||+.=|
T Consensus 10 ~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 10 VAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHhhc
Confidence 44444444444445555554
No 76
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=27.32 E-value=44 Score=36.94 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHhhcccC-CcceeEe
Q psy10277 270 VGLMTILTAALFYLKRYKFSSL-KTRKISY 298 (305)
Q Consensus 270 l~fl~il~~l~y~lkr~~W~~i-~~~~~~~ 298 (305)
++.+++|++|+|+.+|+-|+.- |.||+..
T Consensus 284 livl~lL~vLl~yCrrkc~~~r~~~~~~~l 313 (807)
T PF10577_consen 284 LIVLILLCVLLCYCRRKCLKPRQRHRKLTL 313 (807)
T ss_pred HHHHHHHHHHHHhhhcccCCcccccccccc
Confidence 5566788899999999999988 5777765
No 77
>PRK15358 pathogenicity island 2 effector protein SseF; Provisional
Probab=27.10 E-value=1.5e+02 Score=27.85 Aligned_cols=63 Identities=19% Similarity=0.250 Sum_probs=46.7
Q ss_pred ChhhHhhhHHHHHHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHHHHHHHHHHHHHHHHH
Q psy10277 216 TPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALF 281 (305)
Q Consensus 216 Tpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y 281 (305)
||+.+.|+-.=-..|+.|+- +.----+|+-|-..+-++.||+|+-+-++--+.|.+-+.=+.-
T Consensus 26 tpeqi~qqrdya~hf~qyti---ral~AgV~FgvSIaatV~SGGAg~PLlilAGv~l~LAVaD~aC 88 (239)
T PRK15358 26 TPEQIRQQRDYAIHFMQYTI---RALGATVVFGLSVAAAVISGGAGLPIAILAGAALVIAIGDACC 88 (239)
T ss_pred CHHHHHHHHHHHHHHHHHHH---HHHHhhhheeeeeeeeeecCCccchHHHHhhhHHHHHHHHHHH
Confidence 89998888666678998863 2222335666767888899999999999988888877665443
No 78
>COG3082 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.03 E-value=32 Score=27.19 Aligned_cols=22 Identities=27% Similarity=0.499 Sum_probs=15.2
Q ss_pred CCCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277 131 NGAYPPDLSYITMARHGAEDYVFHLLT 157 (305)
Q Consensus 131 ~Ga~PPDLSliaraR~~G~dyIYs~L~ 157 (305)
--..|+|||||+.. +-+-++|+
T Consensus 25 KH~ap~dLsLmvlG-----NmvtNlin 46 (74)
T COG3082 25 KHKAPTDLSLMVLG-----NMVTNLIN 46 (74)
T ss_pred hcCCCcchhHHHHH-----HHHHHHHH
Confidence 45679999999863 44445555
No 79
>PRK09400 secE preprotein translocase subunit SecE; Reviewed
Probab=26.90 E-value=1.6e+02 Score=22.31 Aligned_cols=32 Identities=16% Similarity=0.144 Sum_probs=27.7
Q ss_pred hhHhhhHHHHHHHHhhhCCCcHHHHHhhceeE
Q psy10277 218 ATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKC 249 (305)
Q Consensus 218 at~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v 249 (305)
+...+..+|-..+|.=+.-|..+|=+++..-+
T Consensus 8 e~~~~f~~d~~rvl~~~~KPd~~Ef~~ia~~~ 39 (61)
T PRK09400 8 ENVKNFLEDYKRVLKVARKPTREEFLLVAKVT 39 (61)
T ss_pred HhHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 34677899999999999999999999988766
No 80
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=26.64 E-value=43 Score=29.38 Aligned_cols=11 Identities=9% Similarity=0.256 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy10277 269 AVGLMTILTAA 279 (305)
Q Consensus 269 ~l~fl~il~~l 279 (305)
++.|++++.++
T Consensus 23 ~i~Flil~~iL 33 (173)
T PRK13460 23 LVTFLVVVLVL 33 (173)
T ss_pred HHHHHHHHHHH
Confidence 34444444333
No 81
>PHA02650 hypothetical protein; Provisional
Probab=26.44 E-value=1.1e+02 Score=24.70 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHhhcccCCcce
Q psy10277 270 VGLMTILTAALFYLKRYKFSSLKTRK 295 (305)
Q Consensus 270 l~fl~il~~l~y~lkr~~W~~i~~~~ 295 (305)
+.+.++++++.++.-|-+|+.+..||
T Consensus 56 i~~v~i~~l~~flYLK~~~r~~~~~~ 81 (81)
T PHA02650 56 IFSLIIVALFSFFVFKGYTRNLNGRK 81 (81)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCC
Confidence 45555666677777789999988776
No 82
>PF12459 DUF3687: D-Ala-teichoic acid biosynthesis protein; InterPro: IPR021008 Proteins in this family are bacterial proteins of approximately 50 amino acids in length. There are two completely conserved residues (L and Y) that may be functionally important. A number of entries are annotated as D-Ala-teichoic acid biosynthesis protein; however there is no direct evidence to support this annotation.
Probab=25.57 E-value=1.2e+02 Score=21.77 Aligned_cols=34 Identities=18% Similarity=0.252 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeEe
Q psy10277 262 ALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISY 298 (305)
Q Consensus 262 ~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~~ 298 (305)
+.-+.++.+.|++||.+|.|+.-. +++-..++.|
T Consensus 7 ~~~fi~~T~fYf~Ill~L~ylYgy---~g~~~~~FIY 40 (42)
T PF12459_consen 7 AVKFIGKTLFYFAILLALIYLYGY---SGIGQGPFIY 40 (42)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc---CCCCCCCeec
Confidence 345677889999999999988643 4444444443
No 83
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=25.44 E-value=44 Score=30.64 Aligned_cols=29 Identities=10% Similarity=-0.080 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCcce
Q psy10277 267 LQAVGLMTILTAALFYLKRYKFSSLKTRK 295 (305)
Q Consensus 267 ~~~l~fl~il~~l~y~lkr~~W~~i~~~~ 295 (305)
.|+|.|++++.++..++.+.+.+-|..|+
T Consensus 58 w~~I~FliL~~lL~k~~~~pI~~vLe~R~ 86 (204)
T PRK09174 58 WLAITFGLFYLFMSRVILPRIGGIIETRR 86 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44599999999998888888988887665
No 84
>COG3748 Predicted membrane protein [Function unknown]
Probab=25.03 E-value=87 Score=31.69 Aligned_cols=39 Identities=23% Similarity=0.475 Sum_probs=28.0
Q ss_pred HHHHHhhccccccccccccccc--CCC---CCHHHHHHHHHHhcc
Q psy10277 56 EVYKNVCAACHSARFICYRNLV--GVS---HTEAEAKREAEEIMV 95 (305)
Q Consensus 56 qVf~~vCaaCHSlky~~y~~l~--~~g---~t~~evk~~a~~~~v 95 (305)
.+...-|+-||+.+-. |.-+. -.| -|++|+++.|.|...
T Consensus 329 ~~v~~rCs~CHaa~P~-~e~~~~~p~gv~ldt~~~iaa~A~~Iy~ 372 (407)
T COG3748 329 DVVQGRCSMCHAAEPT-WEGISAPPKGVMLDTDEQIAAHAREIYL 372 (407)
T ss_pred HHHHhhhhhhhcCCCc-ccccccCCCceeecCHHHHHHHHHHHHH
Confidence 4778899999999873 33332 122 378999999998754
No 85
>PF14376 Haem_bd: Haem-binding domain
Probab=24.77 E-value=31 Score=29.61 Aligned_cols=22 Identities=36% Similarity=0.621 Sum_probs=15.5
Q ss_pred HHHHHHhhcccccccc--cccccc
Q psy10277 55 YEVYKNVCAACHSARF--ICYRNL 76 (305)
Q Consensus 55 ~qVf~~vCaaCHSlky--~~y~~l 76 (305)
..++++-|.-|||-+- =-|.++
T Consensus 37 ~~il~~~CydCHSn~T~~PwYa~i 60 (137)
T PF14376_consen 37 KIILKNSCYDCHSNNTRYPWYANI 60 (137)
T ss_pred HHHHHccccccCCCCCCCccceec
Confidence 4578889999999753 344444
No 86
>PF06040 Adeno_E3: Adenovirus E3 protein; InterPro: IPR009266 This family consists of several Adenovirus E3 proteins. The E3 protein does not seem to be essential for virus replication in cultured cells suggesting that the protein may function in virus-host interactions [].
Probab=24.73 E-value=33 Score=29.67 Aligned_cols=27 Identities=41% Similarity=0.530 Sum_probs=16.7
Q ss_pred eccccccccchhhHH-H-HHHHHHHHHHH
Q psy10277 250 MTTLGVLAGGAGALL-Y-ALQAVGLMTIL 276 (305)
Q Consensus 250 ~~~~~~~~~~~~~~~-~-~~~~l~fl~il 276 (305)
+.+||||+||.-+.| | -+-...||.||
T Consensus 89 ~l~LGvV~GG~i~vLcylylPC~~~l~v~ 117 (127)
T PF06040_consen 89 YLILGVVAGGLIAVLCYLYLPCWVELVVL 117 (127)
T ss_pred hhhHHHHhccHHHHHHHHhccHHHhhhhh
Confidence 356999999986655 2 34444454443
No 87
>KOG2927|consensus
Probab=24.66 E-value=92 Score=31.56 Aligned_cols=29 Identities=24% Similarity=0.279 Sum_probs=18.0
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy10277 257 AGGAGALLYALQAVGLMTILTAALFYLKR 285 (305)
Q Consensus 257 ~~~~~~~~~~~~~l~fl~il~~l~y~lkr 285 (305)
+|+.|-|.+.|-..+.=+||++++|++.+
T Consensus 223 ig~~gfl~~IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 223 IGAGGFLAFILVLAIVRLILFGITWILTG 251 (372)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 45666666555545555677777777765
No 88
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=23.95 E-value=52 Score=28.89 Aligned_cols=17 Identities=18% Similarity=0.071 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10277 267 LQAVGLMTILTAALFYL 283 (305)
Q Consensus 267 ~~~l~fl~il~~l~y~l 283 (305)
.|++.|++++.++.+++
T Consensus 23 ~~~i~Flil~~lL~~~l 39 (175)
T PRK14472 23 WTAVTFVIVLLILKKIA 39 (175)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34455554444433333
No 89
>PF03967 PRCH: Photosynthetic reaction centre, H-chain N-terminal region; InterPro: IPR015810 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry represents the N-terminal domain of the photosynthetic reaction centre H subunit, which includes the transmembrane domain and part of the cytoplasmic domain [].; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0019684 photosynthesis, light reaction, 0030077 plasma membrane light-harvesting complex; PDB: 1RZZ_H 1PST_H 2J8D_H 3DUQ_H 1FNP_H 1KBY_H 1E14_H 2HG3_H 1UMX_H 1YST_H ....
Probab=23.88 E-value=1.1e+02 Score=27.04 Aligned_cols=20 Identities=15% Similarity=0.403 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q psy10277 270 VGLMTILTAALFYLKRYKFS 289 (305)
Q Consensus 270 l~fl~il~~l~y~lkr~~W~ 289 (305)
-+|-++|++|+|+|+||==|
T Consensus 18 yaFwiFFagLi~YLrrEdkR 37 (136)
T PF03967_consen 18 YAFWIFFAGLIYYLRREDKR 37 (136)
T ss_dssp HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHhccccc
Confidence 45778999999999998543
No 90
>TIGR02162 torC trimethylamine-N-oxide reductase c-type cytochrome TorC. This family includes consists of TorC, a pentahemic c-type cytochrome subunit of periplasmic reductases for trimethylamine-N-oxide (TMAO). The N-terminal half is closely related to tetrahemic NapC (or NirT) subunits of periplasmic nitrate (or nitrite) reductases; some species have both TMAO and nitrate reductase complexes.
Probab=23.81 E-value=30 Score=34.99 Aligned_cols=11 Identities=36% Similarity=0.915 Sum_probs=9.4
Q ss_pred Hhhcccccccc
Q psy10277 60 NVCAACHSARF 70 (305)
Q Consensus 60 ~vCaaCHSlky 70 (305)
+.|.+||+|+.
T Consensus 45 eFC~sCH~M~~ 55 (386)
T TIGR02162 45 EFCISCHSMQN 55 (386)
T ss_pred hhhHhccCCcH
Confidence 56999999975
No 91
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=23.57 E-value=32 Score=30.28 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcccC
Q psy10277 265 YALQAVGLMTILTAALFYLKRYKFSSL 291 (305)
Q Consensus 265 ~~~~~l~fl~il~~l~y~lkr~~W~~i 291 (305)
...|++-|++++ ++|++..|++|
T Consensus 25 ~~~~~inflil~----~lL~~fl~kPi 47 (167)
T PRK08475 25 IIERTINFLIFV----GILWYFAAKPL 47 (167)
T ss_pred HHHHHHHHHHHH----HHHHHHHHHHH
Confidence 344555555544 44555556555
No 92
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=22.56 E-value=32 Score=30.81 Aligned_cols=12 Identities=42% Similarity=0.894 Sum_probs=7.3
Q ss_pred ccccccchhhHH
Q psy10277 253 LGVLAGGAGALL 264 (305)
Q Consensus 253 ~~~~~~~~~~~~ 264 (305)
+|++.|..|++|
T Consensus 52 IGvVVGVGg~il 63 (154)
T PF04478_consen 52 IGVVVGVGGPIL 63 (154)
T ss_pred EEEEecccHHHH
Confidence 466667666554
No 93
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=21.90 E-value=99 Score=24.47 Aligned_cols=18 Identities=22% Similarity=0.313 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhh
Q psy10277 270 VGLMTILTAALFYLKRYK 287 (305)
Q Consensus 270 l~fl~il~~l~y~lkr~~ 287 (305)
++|++++++++|.++|++
T Consensus 75 ~~~~~f~~~v~yI~~rRl 92 (92)
T PF03908_consen 75 FAFLFFLLVVLYILWRRL 92 (92)
T ss_pred HHHHHHHHHHHHHhhhcC
Confidence 667888888899888864
No 94
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=21.50 E-value=64 Score=27.64 Aligned_cols=7 Identities=14% Similarity=0.069 Sum_probs=2.7
Q ss_pred HHHHHHH
Q psy10277 267 LQAVGLM 273 (305)
Q Consensus 267 ~~~l~fl 273 (305)
.|++.|+
T Consensus 12 ~qli~Fl 18 (141)
T PRK08476 12 ATFVVFL 18 (141)
T ss_pred HHHHHHH
Confidence 3334333
No 95
>PHA03290 envelope glycoprotein I; Provisional
Probab=21.28 E-value=86 Score=31.57 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=16.5
Q ss_pred HHHHHHHHHhhcccccccccc-cccc
Q psy10277 52 RRGYEVYKNVCAACHSARFIC-YRNL 76 (305)
Q Consensus 52 qRG~qVf~~vCaaCHSlky~~-y~~l 76 (305)
||+..+|.- |-.=||..|-. ++|+
T Consensus 97 R~~a~AFr~-CR~k~s~hy~~~~~Ri 121 (357)
T PHA03290 97 RIRTGAFIA-CRVKHSWHYENATDRI 121 (357)
T ss_pred Ccccchhhh-hhhccccccCCccccc
Confidence 667777754 88778877764 6655
No 96
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=21.22 E-value=44 Score=29.58 Aligned_cols=16 Identities=0% Similarity=0.405 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHH
Q psy10277 267 LQAVGLMTILTAALFY 282 (305)
Q Consensus 267 ~~~l~fl~il~~l~y~ 282 (305)
+|++-|++++.++.|+
T Consensus 31 ~~~inflil~~iL~~f 46 (184)
T PRK13455 31 VVTLAFLLFIGILVYF 46 (184)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778788777777666
No 97
>TIGR03153 cytochr_NrfH cytochrome c nitrate reductase, small subunit. Members of this protein family are NrfH, a tetraheme cytochrome c. NrfH is the cytochrome c nitrate reductase small subunit, and forms a heterodimer with NrfA, the catalytic subunit. While NrfA can act as a monomer, NrfH can bind to and anchor NrfA in the membrane and enables electron transfer to NrfA from quinones.
Probab=21.06 E-value=35 Score=29.10 Aligned_cols=16 Identities=25% Similarity=0.688 Sum_probs=13.0
Q ss_pred HHHHHHHHhhcccccc
Q psy10277 53 RGYEVYKNVCAACHSA 68 (305)
Q Consensus 53 RG~qVf~~vCaaCHSl 68 (305)
++.++..+.|.+||+.
T Consensus 96 ~~~~~~~~nC~~CH~~ 111 (135)
T TIGR03153 96 HSRKVVQENCVRCHAG 111 (135)
T ss_pred HHhHhhhcchHHHHhH
Confidence 3467888899999995
No 98
>PRK02693 apocytochrome f; Reviewed
Probab=20.96 E-value=32 Score=33.81 Aligned_cols=22 Identities=18% Similarity=0.236 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHhhcccC
Q psy10277 270 VGLMTILTAALFYLKRYKFSSL 291 (305)
Q Consensus 270 l~fl~il~~l~y~lkr~~W~~i 291 (305)
..+.++|+=++..|||+-+..+
T Consensus 284 F~~~v~laQi~LVLKKKQ~EKV 305 (312)
T PRK02693 284 FFAAVMLAQILLVLKKKQVEKV 305 (312)
T ss_pred HHHHHHHHHHHhhhhhhhhhhh
Confidence 4455666777788888776654
No 99
>PRK15032 trimethylamine N-oxide reductase cytochrome c-type subunit; Provisional
Probab=20.81 E-value=38 Score=34.33 Aligned_cols=11 Identities=36% Similarity=0.921 Sum_probs=9.3
Q ss_pred Hhhcccccccc
Q psy10277 60 NVCAACHSARF 70 (305)
Q Consensus 60 ~vCaaCHSlky 70 (305)
+.|.+||+|+.
T Consensus 46 eFC~sCH~M~~ 56 (390)
T PRK15032 46 EFCVSCHSMQP 56 (390)
T ss_pred hHhHhcCCCch
Confidence 56999999974
No 100
>PF04718 ATP-synt_G: Mitochondrial ATP synthase g subunit; InterPro: IPR006808 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents the G subunit found in the F0 complex of F-ATPases in mitochondria. The function of subunit G is currently unknown. There is no counterpart in chloroplast or bacterial F-ATPases identified so far []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=20.74 E-value=1.4e+02 Score=24.58 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=31.3
Q ss_pred ChhhHhhhHHHHHHHHh---hhCCCcHHHHHhhceeEeccccccccchhhHHHHHHHHHHHHH
Q psy10277 216 TPATQSQLAKDVSTFLK---WCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTI 275 (305)
Q Consensus 216 Tpat~~Q~a~DVvaFL~---w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~i 275 (305)
|++++.+.-+++..-.. ..++|...-++..-+.+ .-.+-.-++++|.++|+.+
T Consensus 34 t~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~-------~e~~~~~l~~~Ev~~wF~v 89 (103)
T PF04718_consen 34 TPAEFQSVYQQLFKTVKSAKSGSSPKSKLKQWKNLTV-------KEAAKNGLVGAEVYGWFFV 89 (103)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHhhcCCH-------HHHHHHHHHHHHHHHHHhh
Confidence 88888888888877777 44444444332222222 1122344678888777654
No 101
>TIGR03806 chp_HNE_0200 conserved hypothetical protein, HNE_0200 family. The model TIGR03805 describes an uncharacterized protein family that contains repeats associated with the formation of a right-handed helical stack of parallel beta strands, homologous to those found in a number of carbohydrate-binding proteins and sugar hydrolases. This model describes another uncharacterized protein family, found in the same species as TIGR03805 member proteins, usually as the adjacent gene or in a fusion protein. An example is HNE_0200 from Hyphomonas neptunium ATCC 15444. Sometimes two members of this family are with a single member of TIGR03805. The function is unknown.
Probab=20.52 E-value=56 Score=32.15 Aligned_cols=18 Identities=28% Similarity=0.569 Sum_probs=12.9
Q ss_pred HHHHHHHHHhhccccccc
Q psy10277 52 RRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 52 qRG~qVf~~vCaaCHSlk 69 (305)
+|=.-++..+|+.||+-.
T Consensus 214 ~rarpyL~~NC~~CH~p~ 231 (317)
T TIGR03806 214 QRARAYLDVNCAHCHNPG 231 (317)
T ss_pred HHHHHHHHhHHHhcCCCC
Confidence 344446677999999965
No 102
>CHL00037 petA cytochrome f
Probab=20.32 E-value=33 Score=33.89 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHhhcccC
Q psy10277 270 VGLMTILTAALFYLKRYKFSSL 291 (305)
Q Consensus 270 l~fl~il~~l~y~lkr~~W~~i 291 (305)
..+.++++=++..|||+-+..+
T Consensus 292 F~~~v~laQI~LVLKKKQ~EKV 313 (320)
T CHL00037 292 FLASVILAQIFLVLKKKQFEKV 313 (320)
T ss_pred HHHHHHHHHHHheeehhhhhhe
Confidence 4444566666777887766443
No 103
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=20.25 E-value=81 Score=27.00 Aligned_cols=55 Identities=24% Similarity=0.299 Sum_probs=34.1
Q ss_pred cccCCCChhhHhhhHHHHHHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHH
Q psy10277 210 IEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYA 266 (305)
Q Consensus 210 v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~ 266 (305)
++|.-....++.+...|+.+.+.|+.+-.. +..+...=++.+|--|||-=|+..+
T Consensus 35 ~~Yrl~p~~~~p~~~~D~~~a~~~l~~~~~--~~~~d~~~i~l~G~SAGg~la~~~~ 89 (211)
T PF07859_consen 35 IDYRLAPEAPFPAALEDVKAAYRWLLKNAD--KLGIDPERIVLIGDSAGGHLALSLA 89 (211)
T ss_dssp EE---TTTSSTTHHHHHHHHHHHHHHHTHH--HHTEEEEEEEEEEETHHHHHHHHHH
T ss_pred eeccccccccccccccccccceeeeccccc--cccccccceEEeecccccchhhhhh
Confidence 345545556778889999999999987653 3333333345677777776555444
No 104
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=20.24 E-value=78 Score=23.21 Aligned_cols=21 Identities=29% Similarity=0.724 Sum_probs=18.9
Q ss_pred ChhhHhhhHHHHHHHHhhhCC
Q psy10277 216 TPATQSQLAKDVSTFLKWCGE 236 (305)
Q Consensus 216 Tpat~~Q~a~DVvaFL~w~ae 236 (305)
+|.|+.....||..|+.|+.+
T Consensus 15 s~~T~~~Y~~~l~~f~~~~~~ 35 (84)
T PF02899_consen 15 SPNTIRSYRRDLRRFIRWLEE 35 (84)
T ss_dssp -HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHhhhh
Confidence 799999999999999999988
Done!