Query psy10277
Match_columns 305
No_of_seqs 164 out of 713
Neff 4.4
Searched_HMMs 29240
Date Fri Aug 16 22:20:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10277.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10277hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1pp9_D Cytochrome C-1, cytochr 100.0 1.6E-94 5.6E-99 664.0 18.5 240 27-302 2-241 (241)
2 3cx5_D Cytochrome C1, heme pro 100.0 9.2E-95 3.1E-99 667.9 16.5 243 27-304 5-247 (248)
3 2qjy_B Cytochrome C1; cytochro 100.0 1.1E-80 3.9E-85 579.0 15.0 219 29-298 3-262 (269)
4 1zrt_D Cytochrome C1; cytochro 100.0 1.6E-79 5.4E-84 568.9 20.3 215 30-295 2-257 (258)
5 2yiu_B Cytochrome C1, heme pro 100.0 4.7E-80 1.6E-84 573.5 15.9 224 23-297 19-262 (263)
6 3o0r_C Nitric oxide reductase 98.2 2.9E-06 9.9E-11 69.4 6.7 23 47-69 45-68 (146)
7 1ycc_A Cytochrome C; electron 98.1 2.6E-06 8.8E-11 66.2 4.7 23 48-70 5-27 (108)
8 1w2l_A Cytochrome oxidase subu 98.1 6.3E-06 2.2E-10 62.2 6.2 21 49-69 4-25 (99)
9 2w9k_A Cytochrome C, cytochrom 98.0 3.7E-06 1.2E-10 66.2 4.4 24 47-70 10-33 (114)
10 2l4d_A SCO1/SENC family protei 98.0 2.7E-06 9.1E-11 65.5 3.1 20 50-69 2-21 (110)
11 1hro_A Cytochrome C2; electron 97.9 7.5E-06 2.6E-10 63.4 4.6 22 49-70 6-27 (106)
12 2c1d_B SOXX; sulfur oxidation, 97.9 8.1E-06 2.8E-10 66.5 4.5 21 49-69 24-48 (137)
13 2zxy_A Cytochrome C552, cytoch 97.9 2.2E-05 7.4E-10 57.6 6.4 16 53-68 2-18 (87)
14 3mk7_B Cytochrome C oxidase, C 97.9 4.4E-05 1.5E-09 68.8 8.9 25 131-157 102-126 (203)
15 1h32_B Cytochrome C, SOXX; ele 97.8 1.4E-05 4.7E-10 65.0 4.6 22 48-69 24-49 (138)
16 3ph2_B Cytochrome C6; photosyn 97.8 1.4E-05 4.8E-10 58.7 3.7 20 49-68 2-21 (86)
17 1ccr_A Cytochrome C; electron 97.7 4.4E-05 1.5E-09 59.6 6.0 22 49-70 10-31 (112)
18 1c75_A Cytochrome C-553; heme, 97.7 3.8E-05 1.3E-09 55.4 4.5 16 53-68 2-17 (71)
19 1co6_A Protein (cytochrome C2) 97.7 5.9E-05 2E-09 58.5 5.7 20 50-70 2-21 (107)
20 1cch_A Cytochrome C551; electr 97.6 8.6E-05 2.9E-09 54.2 5.7 18 52-69 1-19 (82)
21 1qn2_A Cytochrome CH; electron 97.6 3.4E-05 1.2E-09 59.2 3.2 19 50-69 3-21 (100)
22 2blf_B SORB, sulfite\:cytochro 97.6 3.3E-05 1.1E-09 58.8 3.1 23 52-74 19-41 (81)
23 2exv_A Cytochrome C-551; alpha 97.5 0.00016 5.6E-09 52.8 6.0 17 53-69 2-19 (82)
24 155c_A Cytochrome C550; electr 97.5 5.1E-05 1.7E-09 63.2 3.3 20 50-70 5-24 (135)
25 3cp5_A Cytochrome C; electron 97.5 0.00013 4.5E-09 57.5 5.4 24 45-68 28-51 (124)
26 1w5c_T Cytochrome C-550; photo 97.4 1.8E-05 6.1E-10 66.5 -1.0 37 33-69 34-70 (163)
27 1ls9_A Cytochrome C6; omega lo 97.4 6.7E-05 2.3E-09 56.1 2.2 23 46-68 1-23 (91)
28 1f1c_A Cytochrome C549; dimeri 97.2 8.6E-05 2.9E-09 58.8 1.3 34 35-68 8-41 (129)
29 3m97_X Cytochrome C-552, cytoc 97.1 0.00045 1.5E-08 58.2 4.8 20 48-68 41-60 (140)
30 1wve_C 4-cresol dehydrogenase 97.1 0.00023 7.9E-09 52.7 2.6 40 50-89 3-42 (80)
31 1gdv_A Cytochrome C6; RED ALGA 97.0 0.00014 4.9E-09 53.0 1.0 20 50-69 2-21 (85)
32 3dr0_A Cytochrome C6; photosyn 97.0 0.00011 3.7E-09 54.3 0.3 20 50-69 2-21 (93)
33 3a9f_A Cytochrome C; alpha hel 96.9 0.00071 2.4E-08 53.6 4.2 22 51-72 27-48 (92)
34 1a56_A C-551, ferricytochrome 96.9 0.00099 3.4E-08 48.8 4.8 16 54-69 1-17 (81)
35 1f1f_A Cytochrome C6; heme, pr 96.9 0.00019 6.6E-09 52.9 0.8 20 50-69 2-21 (89)
36 3dmi_A Cytochrome C6; electron 96.9 0.00016 5.5E-09 53.2 0.1 19 50-68 2-20 (88)
37 1i54_A Cytochrome C; zinc-porp 96.9 0.00024 8.3E-09 54.2 1.1 21 50-70 2-22 (103)
38 1nir_A Nitrite reductase; hemo 96.9 0.0011 3.8E-08 64.9 6.0 24 45-68 30-53 (543)
39 1mz4_A Cytochrome C550; PSII a 96.9 0.00039 1.3E-08 56.3 2.2 25 45-69 20-44 (137)
40 2ce0_A Cytochrome C6; chloropl 96.8 0.00029 9.9E-09 53.6 1.0 22 49-70 3-24 (105)
41 3cu4_A Cytochrome C family pro 96.8 0.00039 1.3E-08 51.3 1.4 21 49-69 3-23 (85)
42 1cyi_A Cytochrome C6, cytochro 96.8 0.00024 8.1E-09 52.8 0.3 19 50-68 2-20 (90)
43 1c6r_A Cytochrome C6; electron 96.7 0.00027 9.2E-09 52.3 0.3 19 50-68 3-21 (89)
44 3dp5_A OMCF, cytochrome C fami 96.7 0.00024 8.1E-09 55.0 -0.1 25 45-69 13-37 (99)
45 1qks_A Cytochrome CD1 nitrite 96.7 0.0029 1E-07 63.2 7.5 25 45-69 48-72 (567)
46 1e29_A Cytochrome C549; electr 96.6 0.00067 2.3E-08 55.7 1.7 29 39-67 14-42 (135)
47 2zon_G Cytochrome C551; nitrit 96.5 0.00031 1E-08 52.1 -0.6 21 49-69 7-27 (87)
48 3mk7_C Cytochrome C oxidase, C 96.5 0.0013 4.3E-08 61.2 3.2 22 48-69 219-240 (311)
49 1kx2_A Mono-heme C-type cytoch 96.3 0.00044 1.5E-08 51.3 -0.9 20 50-69 2-21 (81)
50 2gc4_D Cytochrome C-L; electro 96.3 0.00087 3E-08 55.2 0.8 23 47-69 42-64 (147)
51 1jdl_A C552, cytochrome C2, IS 96.2 0.00096 3.3E-08 52.6 0.3 20 50-70 4-23 (121)
52 2yev_B Cytochrome C oxidase su 95.0 0.001 3.5E-08 63.0 0.0 19 52-70 237-255 (337)
53 3oa8_B SOXX; cytochrome, sulfu 96.0 0.012 4.2E-07 52.7 6.7 17 222-238 190-206 (208)
54 2c8s_A Cytochrome C-L; HAEM, h 95.9 0.0027 9.2E-08 54.3 2.1 24 46-69 49-72 (172)
55 1cno_A Cytochrome C552; electr 95.8 0.0011 3.6E-08 49.4 -0.7 19 50-69 3-21 (87)
56 2d0w_A Cytochrome CL; electron 95.8 0.0022 7.6E-08 54.4 1.1 23 47-69 44-66 (170)
57 1cc5_A Cytochrome C5; electron 95.8 0.00087 3E-08 50.4 -1.4 18 51-68 4-21 (83)
58 3c2c_A Cytochrome C2; electron 95.8 0.0026 8.8E-08 49.6 1.3 20 50-70 3-22 (112)
59 2bh4_X Cytochrome C-550; C-typ 95.8 0.0022 7.4E-08 53.0 0.8 20 50-70 4-23 (134)
60 1c53_A Cytochrome C553; electr 95.7 0.003 1E-07 46.1 1.3 16 53-69 2-17 (79)
61 1ayg_A Cytochrome C-552; elect 95.7 0.01 3.5E-07 43.2 4.1 14 56-69 3-17 (80)
62 2zzs_A Cytochrome C554; C-type 95.4 0.0018 6.2E-08 49.3 -1.0 19 50-69 23-41 (103)
63 3mk7_C Cytochrome C oxidase, C 95.2 0.0066 2.3E-07 56.3 2.1 43 46-88 127-176 (311)
64 1vyd_A Cytochrome C2; electron 95.2 0.0048 1.6E-07 49.8 0.9 20 50-70 2-21 (116)
65 2xts_B Cytochrome; oxidoreduct 95.1 0.0032 1.1E-07 55.6 -0.3 25 46-70 30-54 (205)
66 1cxc_A Cytochrome C2; electron 95.1 0.0061 2.1E-07 49.5 1.4 20 50-70 4-23 (124)
67 1kb0_A Quinohemoprotein alcoho 95.1 0.014 4.8E-07 59.0 4.2 35 36-72 580-614 (677)
68 1c2n_A Cytochrome C2; electron 95.1 0.0084 2.9E-07 49.1 2.1 20 50-70 23-42 (137)
69 2zoo_A Probable nitrite reduct 94.9 0.0073 2.5E-07 57.9 1.5 25 46-70 334-358 (442)
70 1pby_A Quinohemoprotein amine 94.8 0.021 7.3E-07 57.1 4.4 18 53-70 2-19 (489)
71 1m70_A Cytochrome C4; electron 94.7 0.01 3.4E-07 49.6 1.7 24 47-70 96-127 (190)
72 1kv9_A Type II quinohemoprotei 94.5 0.014 4.7E-07 58.9 2.3 26 45-70 574-599 (668)
73 1yiq_A Quinohemoprotein alcoho 94.5 0.013 4.5E-07 59.3 2.1 26 45-70 589-614 (689)
74 1i8o_A Cytochrome C2; electron 94.4 0.014 5E-07 45.8 1.9 16 51-67 3-18 (114)
75 1h1o_A Cytochrome C-552; elect 94.2 0.0088 3E-07 49.7 0.2 25 46-70 95-127 (183)
76 1c52_A Cytochrome-C552; electr 94.2 0.0087 3E-07 48.2 0.1 17 53-70 3-19 (131)
77 1h1o_A Cytochrome C-552; elect 94.0 0.0067 2.3E-07 50.4 -1.0 21 49-70 4-24 (183)
78 1jmx_A Amine dehydrogenase; ox 93.7 0.032 1.1E-06 56.0 3.1 19 52-70 2-20 (494)
79 1gks_A Cytochrome C551; haloph 93.6 0.015 5E-07 42.6 0.3 18 53-70 1-22 (78)
80 2d0s_A Cytochrome C, cytochrom 93.5 0.022 7.5E-07 41.2 1.1 16 54-69 1-17 (79)
81 3vrd_A FCCA subunit, flavocyto 93.1 0.055 1.9E-06 45.8 3.2 24 46-69 85-108 (174)
82 2c1d_A SOXA; sulfur oxidation, 92.2 0.036 1.2E-06 50.5 0.9 24 46-69 157-187 (264)
83 1zzh_A Cytochrome C peroxidase 92.1 0.062 2.1E-06 50.7 2.5 22 49-70 186-208 (328)
84 2vhd_A Cytochrome C551 peroxid 92.1 0.063 2.2E-06 50.6 2.5 22 49-70 183-205 (323)
85 2c1v_A DI-HAEM cytochrome C pe 92.0 0.064 2.2E-06 51.0 2.5 22 49-70 197-219 (338)
86 1iqc_A DI-heme peroxidase; pro 92.0 0.066 2.3E-06 50.0 2.5 22 48-69 168-190 (308)
87 1nml_A DI-HAEM cytochrome C pe 91.5 0.08 2.7E-06 49.9 2.5 22 49-70 183-205 (326)
88 1h32_A SOXA, diheme cytochrome 91.4 0.041 1.4E-06 50.0 0.4 24 46-69 154-184 (261)
89 3o5c_A Cytochrome C551 peroxid 90.7 0.11 3.7E-06 49.3 2.5 23 48-70 176-199 (320)
90 3hq9_A Cytochrome C551 peroxid 89.9 0.14 4.6E-06 49.2 2.5 20 49-68 205-225 (345)
91 4aan_A Cytochrome C551 peroxid 88.5 0.21 7.2E-06 47.7 2.6 22 49-70 200-222 (341)
92 1m70_A Cytochrome C4; electron 86.4 0.11 3.8E-06 43.2 -0.6 21 50-71 3-23 (190)
93 1e8e_A Cytochrome C''; oxidore 85.3 0.036 1.2E-06 46.4 -4.0 26 45-70 22-57 (124)
94 1dw0_A Cytochrome C; asparagin 85.3 0.17 5.9E-06 41.5 0.1 21 50-70 21-51 (112)
95 2c1d_A SOXA; sulfur oxidation, 84.5 0.28 9.7E-06 44.5 1.2 22 48-69 59-87 (264)
96 1jmx_A Amine dehydrogenase; ox 84.3 0.2 7E-06 50.2 0.1 26 51-76 89-115 (494)
97 3sjl_A Methylamine utilization 83.7 0.51 1.7E-05 45.7 2.6 21 49-69 187-208 (373)
98 1h32_A SOXA, diheme cytochrome 82.3 0.31 1E-05 44.2 0.5 22 48-69 55-83 (261)
99 3oa8_A SOXA; cytochrome, sulfu 81.8 0.28 9.6E-06 45.3 -0.0 24 46-69 160-190 (275)
100 3vrd_A FCCA subunit, flavocyto 81.4 0.37 1.3E-05 40.6 0.6 37 55-93 4-44 (174)
101 1nml_A DI-HAEM cytochrome C pe 80.6 0.9 3.1E-05 42.7 3.0 25 46-70 26-59 (326)
102 2c1v_A DI-HAEM cytochrome C pe 77.1 0.87 3E-05 43.2 1.7 26 45-70 39-73 (338)
103 1zzh_A Cytochrome C peroxidase 76.4 0.91 3.1E-05 42.7 1.7 25 46-70 29-62 (328)
104 2vhd_A Cytochrome C551 peroxid 75.8 0.87 3E-05 42.8 1.4 25 46-70 26-59 (323)
105 3oa8_A SOXA; cytochrome, sulfu 75.8 0.81 2.8E-05 42.2 1.1 20 49-68 51-77 (275)
106 1iqc_A DI-heme peroxidase; pro 74.5 1.9 6.6E-05 40.1 3.3 26 45-70 13-47 (308)
107 3hq9_A Cytochrome C551 peroxid 71.4 2.2 7.7E-05 40.8 3.0 26 45-70 47-81 (345)
108 2ykz_A Cytochrome C'; electron 69.8 1.9 6.5E-05 34.9 1.9 22 47-68 101-122 (127)
109 2j8w_A Cytochrome C'; heme, ir 69.7 1.9 6.6E-05 35.0 1.9 22 47-68 104-125 (129)
110 1mqv_A Cytochrome C'; four-hel 69.5 2 6.7E-05 34.8 1.9 22 47-68 98-119 (125)
111 1cpq_A Cytochrome C'; electron 69.2 2 6.8E-05 35.0 1.9 22 47-68 103-124 (129)
112 3vrc_A Cytochrome C'; C-type c 64.8 2.7 9.4E-05 34.6 1.9 21 47-67 106-126 (131)
113 2fw5_A DHC, diheme cytochrome 64.2 2.4 8.1E-05 35.9 1.4 17 54-70 16-32 (139)
114 2fwt_A DHC, diheme cytochrome 63.8 2.4 8.3E-05 35.2 1.4 17 54-70 5-21 (125)
115 2ccy_A Cytochrome C; electron 61.6 2.6 8.8E-05 34.3 1.1 20 49-68 105-124 (128)
116 3o5c_A Cytochrome C551 peroxid 60.9 4.8 0.00016 38.0 3.0 25 45-69 21-54 (320)
117 1pby_A Quinohemoprotein amine 55.2 2.7 9.3E-05 42.2 0.2 25 52-76 90-115 (489)
118 3de8_A Soluble cytochrome B562 54.0 4.6 0.00016 31.6 1.3 21 47-67 83-103 (106)
119 1s05_A Cytochrome C-556, C556; 51.7 2.4 8.1E-05 34.6 -0.7 22 47-68 102-123 (129)
120 1gqa_A Cytochrome C'; electron 48.6 7.2 0.00025 31.7 1.7 21 48-68 105-125 (130)
121 4aan_A Cytochrome C551 peroxid 46.0 11 0.00039 35.7 2.9 24 46-69 43-75 (341)
122 3u99_A Diheme cytochrome C; cy 44.1 7.4 0.00025 33.1 1.2 13 56-68 13-25 (148)
123 3h2y_A GTPase family protein; 43.1 7.7 0.00026 36.4 1.3 34 59-94 34-67 (368)
124 1b9u_A Protein (ATP synthase); 40.0 13 0.00045 23.4 1.6 19 274-292 12-30 (34)
125 3ec1_A YQEH GTPase; atnos1, at 35.8 10 0.00035 35.5 0.9 33 59-93 36-68 (369)
126 2gqb_A Conserved hypothetical 35.7 4.7 0.00016 33.9 -1.3 60 70-139 63-129 (130)
127 2l2t_A Receptor tyrosine-prote 35.5 21 0.00073 24.6 2.2 15 272-286 23-37 (44)
128 3ayf_A Nitric oxide reductase; 32.6 17 0.00058 38.4 2.0 52 12-68 35-87 (800)
129 2ks1_B Epidermal growth factor 31.8 26 0.0009 24.1 2.2 13 274-286 26-38 (44)
130 2juz_A UPF0352 protein HI0840; 30.7 13 0.00044 28.9 0.5 21 132-157 26-46 (80)
131 1ci3_M Protein (cytochrome F); 29.8 15 0.00051 33.7 0.9 10 61-70 20-29 (249)
132 1hcz_A Cytochrome F; electron 29.6 15 0.00052 33.8 0.9 10 61-70 20-29 (252)
133 1e2w_A Cytochrome F; electron 29.6 15 0.00052 33.7 0.9 10 61-70 20-29 (251)
134 2jr2_A UPF0352 protein CPS_261 26.4 13 0.00044 28.6 -0.2 12 132-143 26-37 (76)
135 2juw_A UPF0352 protein SO_2176 26.3 13 0.00044 28.9 -0.2 21 132-157 26-46 (80)
136 1ogy_B Diheme cytochrome C NAP 26.2 17 0.00058 30.5 0.5 11 60-70 56-66 (130)
137 1vf5_C Cytochrome F; photosynt 26.1 19 0.00065 33.7 0.9 23 269-291 260-282 (289)
138 2jpq_A UPF0352 protein VP2129; 25.5 14 0.00046 28.9 -0.2 21 132-157 26-46 (83)
139 2jxm_B Cytochrome F; copper, e 24.8 15 0.00052 33.7 -0.1 10 61-70 20-29 (249)
140 2jrx_A UPF0352 protein YEJL; h 24.7 14 0.00049 28.8 -0.2 21 132-157 26-46 (83)
141 3b42_A GSU0935, methyl-accepti 21.9 24 0.00082 28.3 0.6 9 60-68 104-112 (135)
142 2jwa_A Receptor tyrosine-prote 20.8 53 0.0018 22.7 2.1 17 271-287 23-39 (44)
143 3mp7_B Preprotein translocase 20.5 66 0.0023 23.4 2.7 30 220-249 8-37 (61)
No 1
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3 f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D* 1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D* 1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D* 3bcc_D* ...
Probab=100.00 E-value=1.6e-94 Score=664.04 Aligned_cols=240 Identities=66% Similarity=1.162 Sum_probs=234.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHHHHHHhcccCCCCcCCCCc
Q psy10277 27 DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMF 106 (305)
Q Consensus 27 ~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~~v~dgp~~~g~~~ 106 (305)
+...||++++|+|+|+++++|++|||||+|||+|||++|||++|++||+|.|+|+||+|+|++|++++|.|+|||+|+||
T Consensus 2 ~~~~~~~~~~w~~~g~~~~~D~~slqRG~qvy~~~CaaCHSl~y~~~r~l~~~g~te~evk~~a~~~~v~d~p~~~g~~f 81 (241)
T 1pp9_D 2 DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEAKALAEEVEVQDGPNEDGEMF 81 (241)
T ss_dssp CCCCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHHTSEEEECCCTTSCCE
T ss_pred CCCCCCCCCCCCCCCCCCCcchHHHhhhHHHHHHhhhhccCccccccccccccCCCHHHHHHHHHhcccCCCcccccccc
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcCCCCCCCcchhhcccccCCCCCCcccCC
Q psy10277 107 KRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIRE 186 (305)
Q Consensus 107 ~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f~~~~~~~~v~~~l~GY~dpP~G~~~~~ 186 (305)
+|+++++|+|++||+|++|||++|||+.|||||+|+|||++|+|||||||| ||.|||.|+++++
T Consensus 82 ~r~~k~~D~~~~p~~n~~Aa~~an~Ga~PPDLSliaraR~gG~dyIyslL~----------------Gy~dpp~G~~~~~ 145 (241)
T 1pp9_D 82 MRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARHGGEDYVFSLLT----------------GYCEPPTGVSLRE 145 (241)
T ss_dssp EEECCTTSBCCCSSSSHHHHHHHTTTCCCCCCSSTTTSSTTHHHHHHHHHT----------------CCCCCCTTCCCCT
T ss_pred cCCccHhhhcccCCChHHHHHHHhCCCCCCchHHHHHHhcCCHHHHHHHHh----------------CCCCCCCccccCC
Confidence 999999999999999999999999999999999999999999999999999 5668999999999
Q ss_pred CcccCCCCCCCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHH
Q psy10277 187 GLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYA 266 (305)
Q Consensus 187 g~~yN~~fpg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~ 266 (305)
|+|||+||||+.|+||+||++++|+|+||||+|++|+++||||||+|+|||++++||+||++|
T Consensus 146 G~~~N~~Fpg~~iaMP~~L~~~~v~y~dGtp~~~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~v----------------- 208 (241)
T 1pp9_D 146 GLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLKM----------------- 208 (241)
T ss_dssp TCEECTTSTTSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH-----------------
T ss_pred cccccccCCCCcccccccccccceecCCCCccchHHHHHHHHHHHHHhcCchHHHHHHHHHHH-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCcceeEecCCC
Q psy10277 267 LQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSS 302 (305)
Q Consensus 267 ~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~~~~~~ 302 (305)
|+||+||++++|++||++||+||+|||+|+|++
T Consensus 209 ---l~fL~il~~l~y~~kr~~W~~vk~~~~~~~~~~ 241 (241)
T 1pp9_D 209 ---LLMMGLLLPLVYAMKRHKWSVLKSRKLAYRPPK 241 (241)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHTCEEEECCCC
T ss_pred ---HHHHHHHHHHHHHHHHHHhhhcccCceecCCCC
Confidence 999999999999999999999999999999863
No 2
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D* 3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Probab=100.00 E-value=9.2e-95 Score=667.87 Aligned_cols=243 Identities=56% Similarity=1.013 Sum_probs=236.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHHHHHHhcccCCCCcCCCCc
Q psy10277 27 DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMF 106 (305)
Q Consensus 27 ~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~~v~dgp~~~g~~~ 106 (305)
+...||++++|+|+|+++++|++|||||+|||+|||++|||++|+|||||.|+|+||+|+|++|++++|.|+|||+|+||
T Consensus 5 ~~~~~~~~~~w~~~g~~~~~D~aslqRG~qvy~~~CaaCHsl~~v~yr~l~~~g~te~evk~~a~~~~v~d~~~~~g~~~ 84 (248)
T 3cx5_D 5 EHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHTNEEVRNMAEEFEYDDEPDEQGNPK 84 (248)
T ss_dssp HHCCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGBTTTBCHHHHHHHHTTSEEECCCCTTCCCC
T ss_pred ccCCCCCCCCCCCCCCCCCcchHhHhhhHHHHHHhhhhccCcccccccccccCCCCHHHHHHHHHhhccCCCcccccCcc
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhcCCchhHHHhhhcCCCCCCCcchhhcccccCCCCCCcccCC
Q psy10277 107 KRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIRE 186 (305)
Q Consensus 107 ~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~~G~dyIYs~L~~f~~~~~~~~v~~~l~GY~dpP~G~~~~~ 186 (305)
+|+++++|.|++||+|++||+++|||+.|||||+|+|||++|+|||||||+|| |.|||.|+++++
T Consensus 85 ~r~g~~~D~~~~p~~n~~Aa~aan~Ga~PPDLSliaraR~gG~dyIyslL~Gy---------------~~dpp~g~~~~~ 149 (248)
T 3cx5_D 85 KRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIVKARHGGCDYIFSLLTGY---------------PDEPPAGVALPP 149 (248)
T ss_dssp EEECCTTSBCCCSCSSHHHHHHTTTTCCCCCCSSTTTSSTTHHHHHHHHHHCC---------------CSSCCTTCCCCT
T ss_pred cCCCchhhccccCCChHHHHHHHhCCCCCCchHHHHHHHcCChHHHHHHHhcc---------------ccCCccccccCC
Confidence 99999999999999999999999999999999999999999999999999965 456899999999
Q ss_pred CcccCCCCCCCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHH
Q psy10277 187 GLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYA 266 (305)
Q Consensus 187 g~~yN~~fpg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~ 266 (305)
|.+||+||||+.|+||+||++++|+|+||||+|++|+++||||||+|+|||++++||+||+||
T Consensus 150 G~~yN~~fpg~~iaMP~~L~~~~v~~~dGtpa~~~q~a~Dvv~FL~w~aEP~~~~Rk~~G~~v----------------- 212 (248)
T 3cx5_D 150 GSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLKT----------------- 212 (248)
T ss_dssp TCEECTTSTTSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHHHHHHHHH-----------------
T ss_pred CccccccCCCCCcCCCccccccceecCCCCccchHHHHHHHHHHHHHHcCchHHHHHHHHHHH-----------------
Confidence 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcccCCcceeEecCCCCC
Q psy10277 267 LQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSKD 304 (305)
Q Consensus 267 ~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~~~~~~~~ 304 (305)
|+||+||++++|++||++||+||+|||+|+|++.+
T Consensus 213 ---l~fL~il~~l~y~~kr~~W~~vk~~k~~~~~~~~~ 247 (248)
T 3cx5_D 213 ---VIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPKPR 247 (248)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHTCEEEECCCCSC
T ss_pred ---HHHHHHHHHHHHHHHHHhhhhcccCceeccCCCCC
Confidence 99999999999999999999999999999987654
No 3
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B* 2qjk_B*
Probab=100.00 E-value=1.1e-80 Score=578.97 Aligned_cols=219 Identities=34% Similarity=0.647 Sum_probs=203.0
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCC---CCHHHHHHHHHHhcccCCCCcCCCC
Q psy10277 29 ELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS---HTEAEAKREAEEIMVEDGPNEKGEM 105 (305)
Q Consensus 29 ~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g---~t~~evk~~a~~~~v~dgp~~~g~~ 105 (305)
..||++++|||+|+|+++|++|||||+|||+|||++|||++|+|||||.|+| +||+|+|++|++++|.| + ++|+
T Consensus 3 ~~~~~~~~wsf~g~f~~~D~asLqRG~qVy~evCaaCHsl~~v~yr~L~d~ggp~~te~evka~a~~~~v~d-~-~~G~- 79 (269)
T 2qjy_B 3 GGHVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQVRAYATQFTVTD-E-ETGE- 79 (269)
T ss_dssp CCCCCCCCCTTCSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGTSTTTTCCCHHHHHHHGGGSEEEC-T-TTCS-
T ss_pred CCCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhhcCCchhhhHHHHHhccCccCCHHHHHHHHhhccccC-C-Cccc-
Confidence 4689999999999999999999999999999999999999999999999888 99999999999999998 3 4788
Q ss_pred ccCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhc-----------------CCchhHHHhhhcCCCCCCCcch
Q psy10277 106 FKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARH-----------------GAEDYVFHLLTGYMDPPAGDYV 168 (305)
Q Consensus 106 ~~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~-----------------~G~dyIYs~L~~f~~~~~~~~v 168 (305)
+|+++++|.+|+ |||+.|||||||+|||+ +|+||||||||
T Consensus 80 -~r~~~~~D~~p~-----------n~Ga~PPDLSliaraR~g~~g~~~~~~~~~~~~~gG~dYIyslLt----------- 136 (269)
T 2qjy_B 80 -DREGKPTDHFPH-----------SALENAPDLSLMAKARAGFHGPMGTGISQLFNGIGGPEYIYSVLT----------- 136 (269)
T ss_dssp -EEECCTTSBCCC-----------CSSTTSCCCSSTTTSCCCCCCSTTCSHHHHHHCCCHHHHHHHHHH-----------
T ss_pred -ccCCCChhhhhh-----------hcCCCCCCccHHHHHhcccccccccccchhcccCCcHHHHHHHHh-----------
Confidence 799999999986 99999999999999996 58899999999
Q ss_pred hhccccc-CCCCCCcc--cCCCcccCCCC------------------CCCccchhhcccccccccCCCChhhHhhhHHHH
Q psy10277 169 FHLLTGY-MDPPAGVQ--IREGLYFNPYF------------------LGGAIGMAQALYNEIIEYEDGTPATQSQLAKDV 227 (305)
Q Consensus 169 ~~~l~GY-~dpP~G~~--~~~g~~yN~~f------------------pg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DV 227 (305)
|| .+||.++. +++|++||+|| ||+.|+||+||++++|+|+||||+|++|+++||
T Consensus 137 -----Gy~~~~p~~~~g~~~~G~~~N~~f~n~~mP~~l~~~qg~~~~~G~~i~M~~pL~d~~v~y~dgtpat~~q~a~DV 211 (269)
T 2qjy_B 137 -----GFPEEPPKCAEGHEPDGFYYNRAFQNGSVPDTCKDANGVKTTAGSWIAMPPPLMDDLVEYADGHDASVHAMAEDV 211 (269)
T ss_dssp -----CCCSSCCGGGTTCCCTTCEEESSCCSSBCCGGGBCTTSCBCSSSEEESSCCCCCTTSSCCTTCCCCCHHHHHHHH
T ss_pred -----cCCCCCCcccccccCCcccccccccCCCCCcchhcccCCccCCCcccccccccccccccCCCCCHHHHHHHHHHH
Confidence 78 78888876 89999999998 688899999999999999999999999999999
Q ss_pred HHHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeEe
Q psy10277 228 STFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISY 298 (305)
Q Consensus 228 vaFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~~ 298 (305)
||||+|+|||++++||+||++| |+||+||++++|++||++||+||+|||+-
T Consensus 212 vaFL~waaEP~~~~Rk~lG~~V--------------------l~fL~il~~l~y~~kr~~W~~vk~~~~~~ 262 (269)
T 2qjy_B 212 SAFLMWAAEPKLMARKQAGFTA--------------------VMFLTVLSVLLYLTNKRLWAGVKGKKKTN 262 (269)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHcCccHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHhhhccccceec
Confidence 9999999999999999999999 99999999999999999999999999874
No 4
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein, rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A {Rhodobacter capsulatus}
Probab=100.00 E-value=1.6e-79 Score=568.93 Aligned_cols=215 Identities=33% Similarity=0.631 Sum_probs=203.8
Q ss_pred CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCC---CCHHHHHHHHHHh-cccCCCCcCCCC
Q psy10277 30 LHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS---HTEAEAKREAEEI-MVEDGPNEKGEM 105 (305)
Q Consensus 30 ~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g---~t~~evk~~a~~~-~v~dgp~~~g~~ 105 (305)
.||++++|||+|+|+++|++|||||+|||+|||++|||++|+|||||.|+| +||+|+|++|+++ +|.| + ++|+
T Consensus 2 ~~~~~~~wsf~G~~~~~D~asLqRG~qvy~evCa~CHsl~~v~yr~L~d~gg~~~te~evk~~a~~~~~v~d-~-~~G~- 78 (258)
T 1zrt_D 2 SNVPDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVREYAAGLDTIID-K-DSGE- 78 (258)
T ss_dssp CCSCSCCCSSSSSSCCCCHHHHHHHHHHHHHTTTTTCCCTTCBGGGSSSSSSCCCCHHHHHHHHHHSCCCCC-S-SSCS-
T ss_pred CCCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHhhcCCchhhhHHHHhhcCCCCCCHHHHHHHHHhhccccC-C-cccc-
Confidence 489999999999999999999999999999999999999999999999888 9999999999999 9988 3 4788
Q ss_pred ccCCCCCCCCCCCCCCcHHHHHHHhCCCC-CCCchhHHhhhc-----------------CCchhHHHhhhcCCCCCCCcc
Q psy10277 106 FKRPGKLSDTFPSPYPNEEAARAANNGAY-PPDLSYITMARH-----------------GAEDYVFHLLTGYMDPPAGDY 167 (305)
Q Consensus 106 ~~r~~~~~D~~~sp~~n~~aA~~an~Ga~-PPDLSliaraR~-----------------~G~dyIYs~L~~f~~~~~~~~ 167 (305)
+|+++++|.+++ |||+. |||||||+|||+ +|+||||||||
T Consensus 79 -~r~~~~~d~~p~-----------~~Ga~~PPDLSliaraR~g~~g~~~~~~~~~~~~~~G~dyIyslLt---------- 136 (258)
T 1zrt_D 79 -ERDRKETDMFPT-----------RVGDGMGPDLSVMAKARAGFSGPAGSGMNQLFKGMGGPEYIYNYVI---------- 136 (258)
T ss_dssp -CCCCCTTSBCCC-----------CCSSSCCCCCTTTGGGCCCCCCSCCTTSCCCCCCCCSHHHHHHHHS----------
T ss_pred -ccCCCChhhhhh-----------hcCCCCCCCchHHHHHhcccccccccccchhcccCCcHHHHHHHHh----------
Confidence 799999999986 99999 999999999996 58999999999
Q ss_pred hhhcccccCCCCCCcc-cCCCcccCCCC------------------CCCccchhhcccccccccCCCChhhHhhhHHHHH
Q psy10277 168 VFHLLTGYMDPPAGVQ-IREGLYFNPYF------------------LGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVS 228 (305)
Q Consensus 168 v~~~l~GY~dpP~G~~-~~~g~~yN~~f------------------pg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVv 228 (305)
||.++|.+.. +++|++||+|| ||+.|+||++|.+++|+|+||||+|++|+++|||
T Consensus 137 ------gy~~~p~~~~g~~~g~~~N~~f~n~~mP~~l~~~qg~~~~~G~~iaM~~~L~~~~v~y~dgtpat~~q~a~DVv 210 (258)
T 1zrt_D 137 ------GFEENPECAPEGIDGYYYNKTFQIGGVPDTCKDAAGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVS 210 (258)
T ss_dssp ------CCCCCCTTCSSCCSSCCCCSSCCSC--CCSCC---SSSCSSCCCCSCCCSCSSCSSCCTTCCCCCHHHHHHHHH
T ss_pred ------cCCCCCcccccCCccccccccccCCCCCcchhcccCccCCCCcccccccccccccccCCCCCHHHHHHHHHHHH
Confidence 6667777765 89999999997 7999999999999999999999999999999999
Q ss_pred HHHhhhCCCcHHHHHhhceeEeccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcce
Q psy10277 229 TFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRK 295 (305)
Q Consensus 229 aFL~w~aeP~~~~Rk~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~ 295 (305)
|||+|+|||++++||+||++| |+||+||++++|++||++||+||+||
T Consensus 211 ~FL~waaEP~~~~Rk~~G~~v--------------------l~fL~il~~l~y~~kr~~W~~vk~~~ 257 (258)
T 1zrt_D 211 AFLMWAAEPKLVARKQMGLVA--------------------MVMLGLLSVMLYLTNKRLWAPYKGHK 257 (258)
T ss_dssp HHHHHHHCTTHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHSTTSSSC
T ss_pred HHHHHHcCccHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHhhhccccC
Confidence 999999999999999999999 99999999999999999999999987
No 5
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC; 2.70A {Paracoccus denitrificans}
Probab=100.00 E-value=4.7e-80 Score=573.53 Aligned_cols=224 Identities=32% Similarity=0.576 Sum_probs=194.2
Q ss_pred cccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccccccccCCC---CCHHHHHHHHHHhcccCCC
Q psy10277 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS---HTEAEAKREAEEIMVEDGP 99 (305)
Q Consensus 23 ~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~y~~l~~~g---~t~~evk~~a~~~~v~dgp 99 (305)
+.+++...||++++|||+|+|+++|++|||||+|||+|||++|||++|+|||||.|.| +||+|+|++|++++|.| +
T Consensus 19 ~~~s~~~~~~~~~~w~f~g~f~~~D~aslqRG~qVy~evCaaCHsl~~v~yr~L~d~Ggp~~te~evka~a~~~~v~d-~ 97 (263)
T 2yiu_B 19 AGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLRYVPLRTLADEGGPQLPEDQVRAYAANFDITD-P 97 (263)
T ss_dssp -----------CCCCTTSSTTCCCCHHHHHHHHHHHHHTGGGTCCCTTCBGGGGGSTTSCCCCHHHHHHHHTTSEEEC-S
T ss_pred ccCcccCCCCCCCCCCCCCccCccchHHHHHHHHHHHHHhhccCCcccchhHhhhhccCCCCCHHHHHHHHhhccccC-C
Confidence 4456677899999999999999999999999999999999999999999999999887 99999999999999998 4
Q ss_pred CcCCCCccCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCchhHHhhhc-----------------CCchhHHHhhhcCCCC
Q psy10277 100 NEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARH-----------------GAEDYVFHLLTGYMDP 162 (305)
Q Consensus 100 ~~~g~~~~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLSliaraR~-----------------~G~dyIYs~L~~f~~~ 162 (305)
+ +|+ +|+++++|.+|+ +|+|+.|||||+|+|+|+ +|+||||+|||
T Consensus 98 ~-~G~--~r~~~~~D~~p~----------an~Ga~PPDLSliakaR~g~~g~~~~~f~~~~~~~gG~dYIyslLt----- 159 (263)
T 2yiu_B 98 E-TEE--DRPRVPTDHFPT----------VSGEGMGPDLSLMAKARAGFHGPYGTGLSQLFNGIGGPEYIHAVLT----- 159 (263)
T ss_dssp S-SSS--EEECCTTSBCCC----------CCSTTCCCCCTTHHHHC-----------------CCHHHHHHHHHT-----
T ss_pred c-ccc--ccCCCChHHhHH----------hhCCCCCCChHHHHHHhcccccccccccchhhcccCcHHHHHHHHh-----
Confidence 4 675 799999999988 499999999999999996 47899999999
Q ss_pred CCCcchhhcccccCCCCCCcccCCCcccCCCCCCCccchhhcccccccccCCCChhhHhhhHHHHHHHHhhhCCCcHHHH
Q psy10277 163 PAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTR 242 (305)
Q Consensus 163 ~~~~~v~~~l~GY~dpP~G~~~~~g~~yN~~fpg~~i~MP~pL~~~~v~y~dGTpat~~Q~a~DVvaFL~w~aeP~~~~R 242 (305)
||.+||.+.. .+|.|||+||||+.|+||+||++++|+|+||||+|++|+++||||||+|++||++++|
T Consensus 160 -----------GY~~~p~~~~-g~~~~~N~~mPg~~iaMp~~L~d~~V~y~DGtpat~~q~a~DVvaFL~waaEP~~~~R 227 (263)
T 2yiu_B 160 -----------GYDGEEKEEA-GAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKMMDR 227 (263)
T ss_dssp -----------CBCSCCC------CCEEBSSSSSSEESSCCCCCTTSSCCTTCCCCCHHHHHHHHHHHHHHHHCTTHHHH
T ss_pred -----------CCCCCcccCC-CCccccCCCCCCccccccccccccccccCCCCccchhHHHHHHHHHHHHhcCccHHHH
Confidence 7778888776 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhceeEeccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcccCCcceeE
Q psy10277 243 KRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKIS 297 (305)
Q Consensus 243 k~~G~~v~~~~~~~~~~~~~~~~~~~~l~fl~il~~l~y~lkr~~W~~i~~~~~~ 297 (305)
|+||+|| |+||+||++++|++||++||+||+||..
T Consensus 228 k~lG~~v--------------------l~fL~il~~l~y~~kr~~W~~vk~~~~~ 262 (263)
T 2yiu_B 228 KQVGFVS--------------------VIFLIVLAALLYLTNKKLWQPIKHPRKP 262 (263)
T ss_dssp HHHHHHH--------------------HHHHHHHHHHHHHHHHHHHTTTC-----
T ss_pred HHHHHHH--------------------HHHHHHHHHHHHHHHHHHhhhcccccCC
Confidence 9999999 9999999999999999999999998853
No 6
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron transport, heme, iron, membrane, CY membrane; HET: HEM HEC; 2.70A {Pseudomonas aeruginosa}
Probab=98.18 E-value=2.9e-06 Score=69.39 Aligned_cols=23 Identities=35% Similarity=0.664 Sum_probs=19.4
Q ss_pred CHHHHHHHHHHHH-Hhhccccccc
Q psy10277 47 DHASIRRGYEVYK-NVCAACHSAR 69 (305)
Q Consensus 47 D~asLqRG~qVf~-~vCaaCHSlk 69 (305)
..++++||.++|. +.|++||+..
T Consensus 45 ~~~~~~~G~~l~~~~~C~~CH~~~ 68 (146)
T 3o0r_C 45 MSAAVVRGKLVWEQNNCVGCHTLL 68 (146)
T ss_dssp CCHHHHHHHHHHHHHTGGGTSEET
T ss_pred CchHHHHHHHHHHhCCCcccCCCc
Confidence 3468999999999 5699999974
No 7
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM; 1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB: 1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B* 2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A* 2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Probab=98.10 E-value=2.6e-06 Score=66.17 Aligned_cols=23 Identities=26% Similarity=0.663 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhcccccccc
Q psy10277 48 HASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 48 ~asLqRG~qVf~~vCaaCHSlky 70 (305)
.+++.+|.++|.+.|++||+..-
T Consensus 5 ~~~~~~G~~lf~~~C~~CH~~~g 27 (108)
T 1ycc_A 5 AGSAKKGATLFKTRCLQCHTVEK 27 (108)
T ss_dssp CCCHHHHHHHHHHHTTTTCCCST
T ss_pred cccHHHHHHHHHhhCcccCCCCC
Confidence 35689999999999999999864
No 8
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain, oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Probab=98.07 E-value=6.3e-06 Score=62.22 Aligned_cols=21 Identities=29% Similarity=0.648 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHh-hccccccc
Q psy10277 49 ASIRRGYEVYKNV-CAACHSAR 69 (305)
Q Consensus 49 asLqRG~qVf~~v-CaaCHSlk 69 (305)
+++++|.++|.+. |++||+..
T Consensus 4 ~~~~~G~~l~~~~~C~~CHg~~ 25 (99)
T 1w2l_A 4 PLAELGARLYREKACFSCHSID 25 (99)
T ss_dssp CHHHHHHHHHHHTSGGGTCCSS
T ss_pred ccHHHHHHHHhhCChhhcCCCC
Confidence 5789999999999 99999974
No 9
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane space, metal-binding, thioether bond, respiratory chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia fasciculata} PDB: 2yk3_A* 4dy9_A*
Probab=98.03 E-value=3.7e-06 Score=66.19 Aligned_cols=24 Identities=29% Similarity=0.527 Sum_probs=20.3
Q ss_pred CHHHHHHHHHHHHHhhcccccccc
Q psy10277 47 DHASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 47 D~asLqRG~qVf~~vCaaCHSlky 70 (305)
+.+.+++|.++|.+.|++||+..-
T Consensus 10 ~~~~~~~G~~lf~~~C~~CH~~~g 33 (114)
T 2w9k_A 10 PPGDAARGEKLFKGRAAQCHTANQ 33 (114)
T ss_dssp CCCCHHHHHHHHHHHTTTTCCCST
T ss_pred CCccHHHHHHHHHhhchhhCCCCC
Confidence 345689999999999999999863
No 10
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=98.01 E-value=2.7e-06 Score=65.52 Aligned_cols=20 Identities=25% Similarity=0.826 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHhhccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlk 69 (305)
++++|.++|.+.|++||+..
T Consensus 2 d~~~G~~lf~~~C~~CH~~~ 21 (110)
T 2l4d_A 2 SFTSGEQIFRTRCSSCHTVG 21 (110)
T ss_dssp ---CHHHHHHHHTTTTCCSS
T ss_pred CHHHHHHHHHHhhHHhcCCC
Confidence 57899999999999999964
No 11
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET: HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Probab=97.94 E-value=7.5e-06 Score=63.45 Aligned_cols=22 Identities=18% Similarity=0.563 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSlky 70 (305)
+.++||.++|.+.|++||+..-
T Consensus 6 ~~~~~G~~lf~~~C~~CH~~~g 27 (106)
T 1hro_A 6 GDPVEGKHLFHTICITCHTDIK 27 (106)
T ss_dssp CCHHHHHHHHTTTGGGTCCSST
T ss_pred ccHHHHHHHHHcchhhhCCCCC
Confidence 3589999999999999999864
No 12
>2c1d_B SOXX; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus pantotrophus}
Probab=97.91 E-value=8.1e-06 Score=66.45 Aligned_cols=21 Identities=24% Similarity=0.581 Sum_probs=18.4
Q ss_pred HHHHHHHHHHH----Hhhccccccc
Q psy10277 49 ASIRRGYEVYK----NVCAACHSAR 69 (305)
Q Consensus 49 asLqRG~qVf~----~vCaaCHSlk 69 (305)
+.++||.++|. +.|++||+..
T Consensus 24 ~~~~~G~~lf~~~~~~~C~~CH~~~ 48 (137)
T 2c1d_B 24 GNPEEGVRIMTTNALGNCVACHQIG 48 (137)
T ss_dssp CCHHHHHHHHTCTTTTCGGGTBCCT
T ss_pred CCHHHHHHHHhcccccChhhhcCCC
Confidence 45899999998 8999999974
No 13
>2zxy_A Cytochrome C552, cytochrome C555; heme protein, oxygen binding, transport protein; HET: HEC; 1.15A {Aquifex aeolicus}
Probab=97.91 E-value=2.2e-05 Score=57.58 Aligned_cols=16 Identities=31% Similarity=0.926 Sum_probs=14.8
Q ss_pred HHHHHHHH-hhcccccc
Q psy10277 53 RGYEVYKN-VCAACHSA 68 (305)
Q Consensus 53 RG~qVf~~-vCaaCHSl 68 (305)
||.++|.+ .|++||+.
T Consensus 2 ~G~~l~~~~~C~~CHg~ 18 (87)
T 2zxy_A 2 DGKAIFQQKGCGSCHQA 18 (87)
T ss_dssp CHHHHHHHTTGGGTCCS
T ss_pred ChHHHHhcCCchhhcCC
Confidence 79999998 89999996
No 14
>3mk7_B Cytochrome C oxidase, CBB3-type, subunit O; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=97.87 E-value=4.4e-05 Score=68.78 Aligned_cols=25 Identities=20% Similarity=0.191 Sum_probs=20.7
Q ss_pred CCCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277 131 NGAYPPDLSYITMARHGAEDYVFHLLT 157 (305)
Q Consensus 131 ~Ga~PPDLSliaraR~~G~dyIYs~L~ 157 (305)
.|.+.|||+.+..-+ ..+|++.+|.
T Consensus 102 sgr~GPDLt~vG~R~--s~~wl~~~I~ 126 (203)
T 3mk7_B 102 SKRTGPDLARVGGRY--SDDWHRAHLY 126 (203)
T ss_dssp SBCSSCCCTTCTTTS--CHHHHHHHHH
T ss_pred CCCCCcChhhhhccC--CHHHHHHHHh
Confidence 478899999997533 6799999888
No 15
>1h32_B Cytochrome C, SOXX; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.1 PDB: 1h31_B* 1h33_B* 2oz1_B*
Probab=97.84 E-value=1.4e-05 Score=65.03 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHH----hhccccccc
Q psy10277 48 HASIRRGYEVYKN----VCAACHSAR 69 (305)
Q Consensus 48 ~asLqRG~qVf~~----vCaaCHSlk 69 (305)
.+.+.+|.++|.+ .|++||+..
T Consensus 24 ~~~~~~G~~lf~~~~~~~C~~CH~~~ 49 (138)
T 1h32_B 24 PGDPVEGRRLMTDRSVGNCIACHEVT 49 (138)
T ss_dssp CCCHHHHHHHHHCTTTTCGGGTCCCT
T ss_pred CCCHHHHHHHHhhccCCChhhccCCC
Confidence 3578999999997 899999974
No 16
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid; HET: HEM; 1.40A {Phormidium laminosum} SCOP: a.3.1.1 PDB: 2v08_A* 1c6s_A*
Probab=97.80 E-value=1.4e-05 Score=58.66 Aligned_cols=20 Identities=40% Similarity=0.866 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHhhcccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSl 68 (305)
+++++|.++|.+.|++||+.
T Consensus 2 ~~~~~G~~l~~~~C~~CHg~ 21 (86)
T 3ph2_B 2 ADLATGAKVFSANCAACHAG 21 (86)
T ss_dssp CCHHHHHHHHHHHTHHHHCS
T ss_pred ccHHHHHHHHHHHhHHhCCC
Confidence 35799999999999999984
No 17
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A {Oryza sativa} SCOP: a.3.1.1
Probab=97.74 E-value=4.4e-05 Score=59.61 Aligned_cols=22 Identities=27% Similarity=0.688 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSlky 70 (305)
+.+++|.++|.++|++||+..-
T Consensus 10 ~~~~~G~~lf~~~C~~CHg~~g 31 (112)
T 1ccr_A 10 GNPKAGEKIFKTKCAQCHTVDK 31 (112)
T ss_dssp CCHHHHHHHHHHHTTTTCCCST
T ss_pred ccHHHHHHHHHhhcHHhCCCCC
Confidence 4579999999999999999754
No 18
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM resolution, electron transport; HET: HEM; 0.97A {Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A* 1k3g_A* 1k3h_A* 1n9c_A*
Probab=97.69 E-value=3.8e-05 Score=55.43 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcccccc
Q psy10277 53 RGYEVYKNVCAACHSA 68 (305)
Q Consensus 53 RG~qVf~~vCaaCHSl 68 (305)
+|.++|.+.|++||+.
T Consensus 2 ~G~~l~~~~C~~CHg~ 17 (71)
T 1c75_A 2 DAEAVVQQKCISCHGG 17 (71)
T ss_dssp CHHHHHHHHTHHHHCT
T ss_pred cHHHHHHHHHHHHcCC
Confidence 6999999999999996
No 19
>1co6_A Protein (cytochrome C2); electron transport(heme protein); HET: HEM; 1.60A {Blastochloris viridis} SCOP: a.3.1.1 PDB: 1cry_A* 1io3_A*
Probab=97.67 E-value=5.9e-05 Score=58.55 Aligned_cols=20 Identities=35% Similarity=0.690 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhcccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky 70 (305)
++.+|.++|.+ |++||+..-
T Consensus 2 d~~~G~~lf~~-C~~CH~~~g 21 (107)
T 1co6_A 2 DAASGEQVFKQ-CLVCHSIGP 21 (107)
T ss_dssp CHHHHHHHHHH-HHTTCCCST
T ss_pred CHHHHHHHHHH-hHhhCCCCC
Confidence 36899999999 999999754
No 20
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=97.62 E-value=8.6e-05 Score=54.16 Aligned_cols=18 Identities=44% Similarity=0.927 Sum_probs=15.7
Q ss_pred HHHHHHHHH-hhccccccc
Q psy10277 52 RRGYEVYKN-VCAACHSAR 69 (305)
Q Consensus 52 qRG~qVf~~-vCaaCHSlk 69 (305)
|+|.++|.+ .|++||+..
T Consensus 1 ~~G~~l~~~~~C~~CHg~~ 19 (82)
T 1cch_A 1 QDGEALFKSKPCAACHSVD 19 (82)
T ss_dssp CCSHHHHHHSTHHHHSCSS
T ss_pred CcHHHHHHhCCChhhcCCC
Confidence 589999997 799999964
No 21
>1qn2_A Cytochrome CH; electron transport; HET: HEC; 2.01A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=97.59 E-value=3.4e-05 Score=59.21 Aligned_cols=19 Identities=26% Similarity=0.658 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHhhccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlk 69 (305)
.+.||.++|.+ |++||+..
T Consensus 3 d~~~G~~l~~~-C~~CH~~~ 21 (100)
T 1qn2_A 3 DAAAGEKAFAP-CKACHNFE 21 (100)
T ss_dssp CHHHHHHHTGG-GGGTCCSS
T ss_pred cHHHHHHHHHH-HHHhcCCC
Confidence 47899999975 99999986
No 22
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite oxidase, molybdopterin, C-type cytochrome, heme, electron transport; HET: MSS HEC; 1.8A {Starkeya novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Probab=97.58 E-value=3.3e-05 Score=58.79 Aligned_cols=23 Identities=43% Similarity=0.863 Sum_probs=20.0
Q ss_pred HHHHHHHHHhhcccccccccccc
Q psy10277 52 RRGYEVYKNVCAACHSARFICYR 74 (305)
Q Consensus 52 qRG~qVf~~vCaaCHSlky~~y~ 74 (305)
.+|.++|.++|++||++.++...
T Consensus 19 ~~G~~l~~~~C~~CH~~~~i~~~ 41 (81)
T 2blf_B 19 QPGFEAAQNNCAACHSVDYINTQ 41 (81)
T ss_dssp STHHHHHHHHTTSSSCTHHHHTS
T ss_pred cchHHHHHHHHHHhcCCcccccC
Confidence 57999999999999999876653
No 23
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=97.52 E-value=0.00016 Score=52.80 Aligned_cols=17 Identities=29% Similarity=0.497 Sum_probs=15.0
Q ss_pred HHHHHHH-Hhhccccccc
Q psy10277 53 RGYEVYK-NVCAACHSAR 69 (305)
Q Consensus 53 RG~qVf~-~vCaaCHSlk 69 (305)
+|.++|. +.|++||+..
T Consensus 2 ~G~~l~~~~~C~~CHg~~ 19 (82)
T 2exv_A 2 DPEVLAKNKGCVACHAID 19 (82)
T ss_dssp CHHHHHHHTTGGGTCCSS
T ss_pred cHHHHHHhCCchhhcCCC
Confidence 7999998 6899999964
No 24
>155c_A Cytochrome C550; electron transport; HET: HEM; 2.50A {Paracoccus denitrificans} SCOP: a.3.1.1
Probab=97.50 E-value=5.1e-05 Score=63.16 Aligned_cols=20 Identities=25% Similarity=0.662 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhcccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky 70 (305)
.+.+|.++|++ |++||++.-
T Consensus 5 d~~~G~~lF~~-CaaCH~~~~ 24 (135)
T 155c_A 5 DAAKGEKEFNK-CKACHMIQA 24 (135)
T ss_dssp CSHHHHHHHTT-TTTTEECCC
T ss_pred CHHHHHHHHHH-HHHhcCCCC
Confidence 46899999998 999999864
No 25
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET: HEC; 1.24A {Rhodothermus marinus}
Probab=97.48 E-value=0.00013 Score=57.49 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHhhcccccc
Q psy10277 45 SFDHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 45 ~~D~asLqRG~qVf~~vCaaCHSl 68 (305)
..+.+.+++|.++|.+.|++||+.
T Consensus 28 ~~~~~~~~~G~~l~~~~C~~CH~~ 51 (124)
T 3cp5_A 28 QIDAALAQQGEQLFNTYCTACHRL 51 (124)
T ss_dssp SCCHHHHHHHHHHHHHHTTTTCCS
T ss_pred cCChHHHHHHHHHHHHhhHHhCCC
Confidence 478999999999999999999996
No 26
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem, membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A {Thermosynechococcus elongatus} SCOP: i.5.1.1
Probab=97.37 E-value=1.8e-05 Score=66.48 Aligned_cols=37 Identities=16% Similarity=0.383 Sum_probs=28.9
Q ss_pred CCCCCCCCCCCCCCCHHHHHHHHHHHHHhhccccccc
Q psy10277 33 PHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 33 ~~~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlk 69 (305)
...+++..+..-.++.+++++|.++|.+.|++||+..
T Consensus 34 ~~~~~~~~~~~~~~~~~~~~~G~~lf~~~Ca~CHg~~ 70 (163)
T 1w5c_T 34 LTVPLNSEGKTITLTEKQYLEGKRLFQYACASCHVGG 70 (163)
T ss_dssp HEEESSTTSCEEECCHHHHHHHHHHHHHHTHHHHGGG
T ss_pred eEEecCCCCCcccCCHHHHHHHHHHHHHhhHHhCCCC
Confidence 3445555554456889999999999999999999853
No 27
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin IX containing Fe, heme, HAEM, electron transport; HET: HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Probab=97.36 E-value=6.7e-05 Score=56.09 Aligned_cols=23 Identities=35% Similarity=0.696 Sum_probs=21.3
Q ss_pred CCHHHHHHHHHHHHHhhcccccc
Q psy10277 46 FDHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 46 ~D~asLqRG~qVf~~vCaaCHSl 68 (305)
+|.+++++|.++|.+.|++||+.
T Consensus 1 ~~~~~~~~G~~l~~~~C~~CHg~ 23 (91)
T 1ls9_A 1 VDAELLADGKKVFAGNCAACHLG 23 (91)
T ss_dssp CCHHHHHHHHHHHHHHTHHHHGG
T ss_pred CCHHHHHHHHHHHHHHhHHhCCC
Confidence 47889999999999999999996
No 28
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET: HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Probab=97.20 E-value=8.6e-05 Score=58.79 Aligned_cols=34 Identities=24% Similarity=0.555 Sum_probs=27.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHhhcccccc
Q psy10277 35 LKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 35 ~~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSl 68 (305)
.++...|..-.++.+.+.+|.++|.+.|++||+.
T Consensus 8 ~~l~~~g~~~~~~~~~~~~G~~lf~~~Ca~CHg~ 41 (129)
T 1f1c_A 8 FPINAQGDTAVLSLKEIKKGQQVFNAACAQCHAL 41 (129)
T ss_dssp EECSTTCCEEECCHHHHHHHHHHHHHHTHHHHGG
T ss_pred eecccccceeccCcccHHHHHHHHHhhhHHhcCC
Confidence 3444445445678899999999999999999995
No 29
>3m97_X Cytochrome C-552, cytochrome C552; electron transport chain (cytochrome), electron transfer, P. denitrificans, electron donor; HET: HEC; 1.33A {Paracoccus denitrificans} PDB: 1c7m_A* 1i6d_A* 1i6e_A* 1ql3_A* 1ql4_A*
Probab=97.10 E-value=0.00045 Score=58.24 Aligned_cols=20 Identities=35% Similarity=0.685 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHhhcccccc
Q psy10277 48 HASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 48 ~asLqRG~qVf~~vCaaCHSl 68 (305)
.+++.||.++| +.|++||+.
T Consensus 41 ~~d~~~G~~lf-~~C~~CH~~ 60 (140)
T 3m97_X 41 SADPAAGEKVF-GKCKACHKL 60 (140)
T ss_dssp TCCHHHHHHHG-GGTTTTCCS
T ss_pred ccCHHHHHHHH-HhhhhhcCC
Confidence 34578999999 899999998
No 30
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit; flavocytochrome, electron-transfer, FAD, heme, oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida} SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Probab=97.09 E-value=0.00023 Score=52.72 Aligned_cols=40 Identities=28% Similarity=0.359 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhcccccccccccccccCCCCCHHHHHHH
Q psy10277 50 SIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKRE 89 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky~~y~~l~~~g~t~~evk~~ 89 (305)
++.+|.++|.+.|++||+..--..-+|.+.+++++.+.+.
T Consensus 3 ~~~~G~~l~~~~C~~CHg~~gg~~P~L~~~~~~~~~l~~~ 42 (80)
T 1wve_C 3 QWGSGKNLYDKVCGHCHKPEVGVGPVLEGRGLPEAYIKDI 42 (80)
T ss_dssp CSSSHHHHHHHTTHHHHSTTTCSSCCCTTSCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHH
Confidence 3578999999999999997633344555545677777664
No 31
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A {Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Probab=97.04 E-value=0.00014 Score=53.04 Aligned_cols=20 Identities=35% Similarity=0.815 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhhccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlk 69 (305)
++++|.++|.++|++||+..
T Consensus 2 ~~~~G~~l~~~~C~~CHg~~ 21 (85)
T 1gdv_A 2 DLDNGEKVFSANCAACHAGG 21 (85)
T ss_dssp HHHHHHHHHHHHTHHHHGGG
T ss_pred cHHHHHHHHHHhhHhhCCCC
Confidence 68999999999999999864
No 32
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer electron transport, heme, iron, metal-binding, thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Probab=97.02 E-value=0.00011 Score=54.25 Aligned_cols=20 Identities=35% Similarity=0.743 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHhhccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlk 69 (305)
++++|.++|.++|++||+..
T Consensus 2 d~~~G~~l~~~~C~~CHg~~ 21 (93)
T 3dr0_A 2 DAAAGAQVFAANCAACHAGG 21 (93)
T ss_dssp CHHHHHHHHHHHTHHHHGGG
T ss_pred cHHHHHHHHHHHhHHhcCCC
Confidence 47899999999999999863
No 33
>3a9f_A Cytochrome C; alpha helix, mono heme, electron transport; HET: HEC P33 PGE PG4; 1.30A {Chlorobaculum tepidum}
Probab=96.93 E-value=0.00071 Score=53.59 Aligned_cols=22 Identities=14% Similarity=0.392 Sum_probs=19.7
Q ss_pred HHHHHHHHHHhhcccccccccc
Q psy10277 51 IRRGYEVYKNVCAACHSARFIC 72 (305)
Q Consensus 51 LqRG~qVf~~vCaaCHSlky~~ 72 (305)
.+.|.++|.+.|.+|||..++.
T Consensus 27 ~~~g~~l~~~kC~~CHs~d~v~ 48 (92)
T 3a9f_A 27 FDAAKKLVDVRCNKCHTLDSVA 48 (92)
T ss_dssp HHHHHHHHHHHSSSSSCSGGGH
T ss_pred hHhHHHHHHhHHHHhcCCcccc
Confidence 4789999999999999999863
No 34
>1a56_A C-551, ferricytochrome C-552; hemoprotein, prokaryotic electron transport; HET: HEC; NMR {Nitrosomonas europaea} SCOP: a.3.1.1 PDB: 1a8c_A*
Probab=96.93 E-value=0.00099 Score=48.79 Aligned_cols=16 Identities=38% Similarity=0.756 Sum_probs=13.2
Q ss_pred HHHHHH-Hhhccccccc
Q psy10277 54 GYEVYK-NVCAACHSAR 69 (305)
Q Consensus 54 G~qVf~-~vCaaCHSlk 69 (305)
|.++|. +.|++||+..
T Consensus 1 ~~~l~~~~~C~~CHg~~ 17 (81)
T 1a56_A 1 DADLAKKNNCIACHQVE 17 (81)
T ss_dssp CHHHHHHHSHHHHBCSS
T ss_pred CHhHHhccCchhhCCCC
Confidence 568997 7899999964
No 35
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria, photosynthesis, electron transport; HET: HEM; 2.70A {Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Probab=96.92 E-value=0.00019 Score=52.90 Aligned_cols=20 Identities=35% Similarity=0.750 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhhccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlk 69 (305)
++++|.++|.+.|++||+..
T Consensus 2 ~~~~G~~l~~~~C~~CHg~~ 21 (89)
T 1f1f_A 2 DVAAGASVFSANCAACHMGG 21 (89)
T ss_dssp CHHHHHHHHHHHTHHHHGGG
T ss_pred cHHHHHHHHHHHhHHhCCCC
Confidence 57899999999999999975
No 36
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM; 1.50A {Phaeodactylum tricornutum} SCOP: a.3.1.1
Probab=96.88 E-value=0.00016 Score=53.21 Aligned_cols=19 Identities=32% Similarity=0.868 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhcccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSl 68 (305)
+++||.++|.++|++||+.
T Consensus 2 d~~~G~~l~~~~C~~CHg~ 20 (88)
T 3dmi_A 2 DVGAGEQIFNANCAACHAG 20 (88)
T ss_dssp CHHHHHHHHHHHTHHHHGG
T ss_pred cHHHHHHHHHHHHHHhCCC
Confidence 4789999999999999993
No 37
>1i54_A Cytochrome C; zinc-porphyrin, mixed-metal, electron transport; HET: HEM ZNH; 1.50A {Thunnus thynnus} SCOP: a.3.1.1 PDB: 1i55_A* 1lfm_A* 5cyt_R* 3cyt_O* 1cyc_A* 2aiu_A* 2b4z_A* 2ybb_Y* 1akk_A* 1fi7_A* 1fi9_A* 1giw_A* 1i5t_A* 1lc1_A* 1lc2_A* 1m60_A* 1ocd_A* 1u75_B* 2frc_A* 2giw_A* ...
Probab=96.87 E-value=0.00024 Score=54.15 Aligned_cols=21 Identities=24% Similarity=0.697 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhcccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky 70 (305)
++++|.++|.+.|++||+..-
T Consensus 2 d~~~G~~lf~~~C~~CH~~~g 22 (103)
T 1i54_A 2 DVAKGKKTFVQKCAQCHTVEN 22 (103)
T ss_dssp CHHHHHHHHHHHTTTTCCCST
T ss_pred cHHHHHHHHHHhhHHhCCCCC
Confidence 478999999999999999864
No 38
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=96.87 E-value=0.0011 Score=64.95 Aligned_cols=24 Identities=21% Similarity=0.623 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHHHHHHhhcccccc
Q psy10277 45 SFDHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 45 ~~D~asLqRG~qVf~~vCaaCHSl 68 (305)
..+.+.+++|.++|.+.|++||+.
T Consensus 30 ~~~~~~~~~G~~l~~~~Ca~CHg~ 53 (543)
T 1nir_A 30 DMSESEFNEAKQIYFQRCAGCHGV 53 (543)
T ss_dssp CCCHHHHHHHHHHHHHHTHHHHTT
T ss_pred CCChhHHHHHHHHHhhhhHhhCCC
Confidence 458899999999999999999996
No 39
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport; HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP: a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V* 3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Probab=96.85 E-value=0.00039 Score=56.27 Aligned_cols=25 Identities=20% Similarity=0.590 Sum_probs=22.4
Q ss_pred CCCHHHHHHHHHHHHHhhccccccc
Q psy10277 45 SFDHASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 45 ~~D~asLqRG~qVf~~vCaaCHSlk 69 (305)
.++.+++++|.++|.++|++||+..
T Consensus 20 ~~~~~~~~~G~~ly~~~Ca~CHg~~ 44 (137)
T 1mz4_A 20 TLTEKQYLEGKRLFQYACASCHVGG 44 (137)
T ss_dssp ECCHHHHHHHHHHHHHHTHHHHGGG
T ss_pred cCChHHHHHHHHHHHhhhHHhcCCC
Confidence 4678899999999999999999964
No 40
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron, thylakoid, photosynthesis, metal-binding, electron transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB: 2ce1_A* 2dge_A* 2v07_A*
Probab=96.80 E-value=0.00029 Score=53.63 Aligned_cols=22 Identities=36% Similarity=0.767 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSlky 70 (305)
+++.+|.++|.++|++||+..-
T Consensus 3 ~~~~~G~~l~~~~Ca~CHg~~g 24 (105)
T 2ce0_A 3 LDIQRGATLFNRACAACHDTGG 24 (105)
T ss_dssp CCHHHHHHHHHHHTTTTSGGGC
T ss_pred hhHHHHHHHHHHHHHHhCCCCC
Confidence 3578999999999999999753
No 41
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Probab=96.77 E-value=0.00039 Score=51.32 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHhhccccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSlk 69 (305)
+.+++|.++|.+.|++||+..
T Consensus 3 g~~~~G~~ly~~~Ca~CHg~~ 23 (85)
T 3cu4_A 3 GSGAGGGELFATHCAGCHPQG 23 (85)
T ss_dssp ----CHHHHHHHHTTTTSGGG
T ss_pred ccHHHHHHHHHHHhHHhCCCC
Confidence 468899999999999999973
No 42
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Probab=96.77 E-value=0.00024 Score=52.79 Aligned_cols=19 Identities=37% Similarity=0.824 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhcccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSl 68 (305)
++.+|.++|.+.|++||+.
T Consensus 2 ~~~~G~~l~~~~C~~CHg~ 20 (90)
T 1cyi_A 2 DLALGAQVFNGNCAACHMG 20 (90)
T ss_dssp CHHHHHHHHHHHTHHHHGG
T ss_pred cHHHHHHHHHHHHHHhCCC
Confidence 4789999999999999996
No 43
>1c6r_A Cytochrome C6; electron transport protein, reduced state, photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus} SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Probab=96.72 E-value=0.00027 Score=52.26 Aligned_cols=19 Identities=32% Similarity=0.805 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhcccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSl 68 (305)
++.+|.++|.+.|++||+.
T Consensus 3 ~~~~G~~l~~~~C~~CHg~ 21 (89)
T 1c6r_A 3 DLALGKQTFEANCAACHAG 21 (89)
T ss_dssp CHHHHHHHHHHHTHHHHGG
T ss_pred cHHHHHHHHHHHHHHHcCC
Confidence 5789999999999999996
No 44
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD phasing, dissimilatory metal reduction, electron transport; HET: HEM; 1.86A {Geobacter sulfurreducens} SCOP: a.3.1.0
Probab=96.72 E-value=0.00024 Score=55.05 Aligned_cols=25 Identities=24% Similarity=0.470 Sum_probs=21.2
Q ss_pred CCCHHHHHHHHHHHHHhhccccccc
Q psy10277 45 SFDHASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 45 ~~D~asLqRG~qVf~~vCaaCHSlk 69 (305)
..|.+.+.+|.++|.++|++||+..
T Consensus 13 ~~~~~~~~~G~~ly~~~Ca~CHg~~ 37 (99)
T 3dp5_A 13 AETAVPNSGGGELFATHCAGCHPQG 37 (99)
T ss_dssp GGGCCCCCCHHHHHHHHTTTTSGGG
T ss_pred CCCcccHHHHHHHHHHHHHHhCCCC
Confidence 3466678999999999999999963
No 45
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=96.68 E-value=0.0029 Score=63.15 Aligned_cols=25 Identities=24% Similarity=0.582 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHHHHHHhhccccccc
Q psy10277 45 SFDHASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 45 ~~D~asLqRG~qVf~~vCaaCHSlk 69 (305)
..+.+.+++|.++|.+.|++||+..
T Consensus 48 ~~~~~~~~~G~~ly~~~Ca~CHg~~ 72 (567)
T 1qks_A 48 ALSDAQYNEANKIYFERCAGCHGVL 72 (567)
T ss_dssp CCCHHHHHHHHHHHHHHTHHHHCTT
T ss_pred CCCHHHHHHHHHHHhhhhHhhCCCC
Confidence 3678899999999999999999963
No 46
>1e29_A Cytochrome C549; electron transport, PSII associated cytochrome, low potential, BIS_histidinyl, PSII modulator; HET: HEC; 1.21A {Synechocystis SP} SCOP: a.3.1.1
Probab=96.57 E-value=0.00067 Score=55.71 Aligned_cols=29 Identities=17% Similarity=0.551 Sum_probs=23.6
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhccccc
Q psy10277 39 HSGLLDSFDHASIRRGYEVYKNVCAACHS 67 (305)
Q Consensus 39 ~~g~~~~~D~asLqRG~qVf~~vCaaCHS 67 (305)
..|-.-.++.+.+.+|.++|.+.|++||+
T Consensus 14 ~~g~~~~~~~~d~~~G~~lf~~~Ca~CH~ 42 (135)
T 1e29_A 14 EAGGTTTLTARQFTNGQKIFVDTCTQCHL 42 (135)
T ss_dssp SSSCEEECCHHHHHHHHHHHHHHTHHHHG
T ss_pred CCCCccCCCcccHHHHHHHHHhHHHHhcC
Confidence 33432357889999999999999999999
No 47
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification, oxidoreductase/electron transport complex; HET: HEM; 1.70A {Achromobacter xylosoxidans}
Probab=96.52 E-value=0.00031 Score=52.12 Aligned_cols=21 Identities=24% Similarity=0.654 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhhccccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSlk 69 (305)
+++++|.++|.++|++||+..
T Consensus 7 ~~~~~G~~l~~~~C~~CHg~~ 27 (87)
T 2zon_G 7 QLDPAGEKLYRSACVVCHASG 27 (87)
T ss_dssp CCCHHHHHHHHHTTHHHHTTT
T ss_pred hhhhHHHHHHHHHhHHHcCCC
Confidence 346899999999999999975
No 48
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=96.50 E-value=0.0013 Score=61.19 Aligned_cols=22 Identities=36% Similarity=0.801 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhccccccc
Q psy10277 48 HASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 48 ~asLqRG~qVf~~vCaaCHSlk 69 (305)
.+.+++|.++|.+.|++||+..
T Consensus 219 ~~~~~~G~~lf~~~Ca~CHg~~ 240 (311)
T 3mk7_C 219 DADLSAGKNVYAQTCAVCHGQG 240 (311)
T ss_dssp CCCHHHHHHHHHHTTHHHHCTT
T ss_pred cccchhhHHHHhhhHHhcCCCC
Confidence 3568999999999999999963
No 49
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome, electron transport, GRAM negative, bacteria; HET: HEC; NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB: 1kx7_A*
Probab=96.30 E-value=0.00044 Score=51.31 Aligned_cols=20 Identities=25% Similarity=0.752 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHhhccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlk 69 (305)
++++|.++|.+.|++||+..
T Consensus 2 ~~~~G~~ly~~~Ca~CHg~~ 21 (81)
T 1kx2_A 2 DLQDAEAIYNKACTVCHSMG 21 (81)
T ss_dssp CCSCHHHHHHHSTTSSTTTT
T ss_pred ccccHHHHHHHHHHHHcCCC
Confidence 35689999999999999963
No 50
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase, blue copper protein, oxidoreductase, electron transport; HET: TRQ HEM; 1.90A {Paracoccus denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C* 1mg2_D* 1mg3_D*
Probab=96.30 E-value=0.00087 Score=55.16 Aligned_cols=23 Identities=26% Similarity=0.654 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHhhccccccc
Q psy10277 47 DHASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 47 D~asLqRG~qVf~~vCaaCHSlk 69 (305)
|.+.+.+|.++|.+.|++||+..
T Consensus 42 ~~~~~~~G~~l~~~~Ca~CHg~~ 64 (147)
T 2gc4_D 42 DPEILPEAEELYAGMCSGCHGHY 64 (147)
T ss_dssp CTTTHHHHHHHHHHHTHHHHCTT
T ss_pred CHHHHHHHHHHHHhhcHHhCCCC
Confidence 45678999999999999999964
No 51
>1jdl_A C552, cytochrome C2, ISO-2; alpha helix, electron transport; HET: HEM; 1.70A {Rhodospirillum centenum} SCOP: a.3.1.1
Probab=96.15 E-value=0.00096 Score=52.57 Aligned_cols=20 Identities=30% Similarity=0.622 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhhcccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky 70 (305)
++.||.++| +.|++||++.-
T Consensus 4 d~~~G~~lf-~~C~~CH~~~~ 23 (121)
T 1jdl_A 4 DPAKGEAVF-KKCMACHRVGP 23 (121)
T ss_dssp CHHHHHHHG-GGTTTTCCCST
T ss_pred CHHHHHHHH-hhhhhhCCCCC
Confidence 578999999 79999999863
No 52
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=95.04 E-value=0.001 Score=63.00 Aligned_cols=19 Identities=42% Similarity=0.889 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhcccccccc
Q psy10277 52 RRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 52 qRG~qVf~~vCaaCHSlky 70 (305)
++|.++|.+.|++||+..-
T Consensus 237 ~~G~~lf~~~Ca~CHg~~g 255 (337)
T 2yev_B 237 ERGQQVFQQNCAACHGVAR 255 (337)
Confidence 8999999999999999743
No 53
>3oa8_B SOXX; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_B*
Probab=95.97 E-value=0.012 Score=52.71 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=13.5
Q ss_pred hhHHHHHHHHhhhCCCc
Q psy10277 222 QLAKDVSTFLKWCGEPE 238 (305)
Q Consensus 222 Q~a~DVvaFL~w~aeP~ 238 (305)
+.++||++||.-...|.
T Consensus 190 eEIaaLaaYL~s~~sPv 206 (208)
T 3oa8_B 190 QQIKDVVAYLFDPESPV 206 (208)
T ss_dssp HHHHHHHHHHHCTTSGG
T ss_pred HHHHHHHHHHHccCCCC
Confidence 44899999998877763
No 54
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding; HET: HEM; 1.6A {Methylobacterium extorquens} SCOP: a.3.1.1
Probab=95.94 E-value=0.0027 Score=54.27 Aligned_cols=24 Identities=25% Similarity=0.666 Sum_probs=21.7
Q ss_pred CCHHHHHHHHHHHHHhhccccccc
Q psy10277 46 FDHASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 46 ~D~asLqRG~qVf~~vCaaCHSlk 69 (305)
.|.+.+.+|.++|.+.|++||+..
T Consensus 49 ~~~~~~~~G~~lf~~~Ca~CHg~~ 72 (172)
T 2c8s_A 49 DDKSCLRNGESLFATSCSGCHGHL 72 (172)
T ss_dssp TCHHHHHHHHHHHHHHTHHHHCTT
T ss_pred CCHHHHHHHHHHHHhhhHHhCCCC
Confidence 477899999999999999999974
No 55
>1cno_A Cytochrome C552; electron transport, pseudomonas nautica, X RAY structure, multiwavelength anomalous dispersion, heme; HET: HEC; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.1
Probab=95.85 E-value=0.0011 Score=49.37 Aligned_cols=19 Identities=42% Similarity=0.740 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlk 69 (305)
++.+|.++|. .|++||+..
T Consensus 3 ~~~~G~~ly~-~C~~CHg~~ 21 (87)
T 1cno_A 3 DIEAGKAKAA-VCAACHGQN 21 (87)
T ss_dssp CHHHHHHHGG-GTHHHHCTT
T ss_pred cHHHHHHHHH-HHHhhcCCC
Confidence 4789999999 999999964
No 56
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM; 1.98A {Hyphomicrobium denitrificans}
Probab=95.84 E-value=0.0022 Score=54.44 Aligned_cols=23 Identities=26% Similarity=0.660 Sum_probs=20.7
Q ss_pred CHHHHHHHHHHHHHhhccccccc
Q psy10277 47 DHASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 47 D~asLqRG~qVf~~vCaaCHSlk 69 (305)
|.+.+++|.++|.++|++||+..
T Consensus 44 ~~~~~~~G~~lf~~~Ca~CHg~~ 66 (170)
T 2d0w_A 44 VAGCLPKGEEIYLESCSGCHGHI 66 (170)
T ss_dssp CGGGHHHHHHHHHHHTHHHHCTT
T ss_pred CHHHHHHHHHHHHhhhHHhCCCC
Confidence 56789999999999999999974
No 57
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A {Azotobacter vinelandii} SCOP: a.3.1.1
Probab=95.80 E-value=0.00087 Score=50.43 Aligned_cols=18 Identities=39% Similarity=0.813 Sum_probs=16.4
Q ss_pred HHHHHHHHHHhhcccccc
Q psy10277 51 IRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 51 LqRG~qVf~~vCaaCHSl 68 (305)
+++|.++|.++|++||+.
T Consensus 4 ~~~G~~ly~~~Ca~CHg~ 21 (83)
T 1cc5_A 4 ARSGDDVVAKYCNACHGT 21 (83)
T ss_dssp SSCSHHHHHHTTHHHHTT
T ss_pred hHHHHHHHHHHHHHHCcC
Confidence 468999999999999996
No 58
>3c2c_A Cytochrome C2; electron transport protein (cytochrome); HET: HEM; 1.68A {Rhodospirillum rubrum} SCOP: a.3.1.1 PDB: 2c2c_A*
Probab=95.80 E-value=0.0026 Score=49.64 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhcccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky 70 (305)
.+.+|.++|. .|++||+..-
T Consensus 3 d~~~G~~lf~-~Ca~CH~~~g 22 (112)
T 3c2c_A 3 DAAAGEKVSK-KCLACHTFDQ 22 (112)
T ss_dssp CHHHHHHHGG-GGTTTCCCST
T ss_pred cHHHHHHHHH-hHHhhCCCCC
Confidence 4689999998 9999999863
No 59
>2bh4_X Cytochrome C-550; C-type cytochrome, heme, electron transfer, axial ligand, pyrrolidone carboxylic acid; HET: HEC; 1.55A {Paracoccus versutus} PDB: 2bh5_X* 2bgv_X* 1cot_A*
Probab=95.77 E-value=0.0022 Score=53.00 Aligned_cols=20 Identities=25% Similarity=0.677 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHhhcccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky 70 (305)
.+.||.++|.+ |++||++..
T Consensus 4 d~~~G~~lF~~-C~~CH~v~~ 23 (134)
T 2bh4_X 4 DAAKGEKEFNK-CKACHMVQA 23 (134)
T ss_dssp CHHHHHHHGGG-TTTTCCEEC
T ss_pred cHHHHHHHHHH-hHhhcCCcC
Confidence 47899999998 999999875
No 60
>1c53_A Cytochrome C553; electron transport; HET: HEM; 1.80A {Desulfovibrio vulgaris str} SCOP: a.3.1.1 PDB: 1dvh_A* 1dwl_B* 1e08_E* 2dvh_A*
Probab=95.69 E-value=0.003 Score=46.13 Aligned_cols=16 Identities=44% Similarity=1.039 Sum_probs=14.4
Q ss_pred HHHHHHHHhhccccccc
Q psy10277 53 RGYEVYKNVCAACHSAR 69 (305)
Q Consensus 53 RG~qVf~~vCaaCHSlk 69 (305)
+|.++|.+ |++||+..
T Consensus 2 ~G~~ly~~-Ca~CHg~~ 17 (79)
T 1c53_A 2 DGAALYKS-CVGCHGAD 17 (79)
T ss_pred cHHHHHHH-HHhccCCC
Confidence 79999998 99999964
No 61
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=95.68 E-value=0.01 Score=43.22 Aligned_cols=14 Identities=36% Similarity=0.826 Sum_probs=10.5
Q ss_pred HHHH-Hhhccccccc
Q psy10277 56 EVYK-NVCAACHSAR 69 (305)
Q Consensus 56 qVf~-~vCaaCHSlk 69 (305)
++|. +.|++||+..
T Consensus 3 ~l~~~~~C~~CHg~~ 17 (80)
T 1ayg_A 3 QLAKQKGCMACHDLK 17 (80)
T ss_dssp TTTTSSSSGGGCCSS
T ss_pred hhHhhCCchhhcCCC
Confidence 4565 5799999964
No 62
>2zzs_A Cytochrome C554; C-type cytochrome, electron transport; HET: HEC; 1.80A {Vibrio parahaemolyticus}
Probab=95.36 E-value=0.0018 Score=49.35 Aligned_cols=19 Identities=42% Similarity=0.681 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhhccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlk 69 (305)
++++|.++|. .|++||+..
T Consensus 23 ~~~~G~~l~~-~C~~CHg~~ 41 (103)
T 2zzs_A 23 DAAAGQAKAA-VCAACHGAD 41 (103)
T ss_dssp CHHHHHHHTT-TTHHHHCTT
T ss_pred CHHHHHHHHH-HHHhhcCCC
Confidence 5789999999 999999864
No 63
>3mk7_C Cytochrome C oxidase, CBB3-type, subunit P; TM helices, oxidoreductase; HET: HEM HEC FC6; 3.20A {Pseudomonas stutzeri}
Probab=95.23 E-value=0.0066 Score=56.30 Aligned_cols=43 Identities=23% Similarity=0.455 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHHHHhhcccccccccc---cccccCC----CCCHHHHHH
Q psy10277 46 FDHASIRRGYEVYKNVCAACHSARFIC---YRNLVGV----SHTEAEAKR 88 (305)
Q Consensus 46 ~D~asLqRG~qVf~~vCaaCHSlky~~---y~~l~~~----g~t~~evk~ 88 (305)
.|.+.+++|.++|.++|++||+..-.. +-+|.+. |-+.+++.+
T Consensus 127 ~~~~~~~~G~~lf~~~Ca~CHg~~g~g~~g~P~L~~~~~~~g~~~~~l~~ 176 (311)
T 3mk7_C 127 QDPQAVKMGARLFANYCSICHGSDAKGSLGFPNLADQDWRWGGDAASIKT 176 (311)
T ss_dssp TCHHHHHHHHHHHHHHTHHHHCTTSCCBTTBCCSSSSCCSSCCSHHHHHH
T ss_pred CCHHHHHHHHHHHhhhHHHhCCCCCCCCCCCCCCCCcccccCCCHHHHHH
Confidence 356678999999999999999975432 4556543 235555544
No 64
>1vyd_A Cytochrome C2; electron transport, redox, mutant; HET: HEM; 2.3A {Rhodobacter capsulatus} SCOP: a.3.1.1 PDB: 1c2r_A*
Probab=95.17 E-value=0.0048 Score=49.78 Aligned_cols=20 Identities=25% Similarity=0.585 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhhcccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky 70 (305)
.+.||.++|. .|++||++.-
T Consensus 2 d~~~G~~~F~-~C~~CH~v~~ 21 (116)
T 1vyd_A 2 DAAKGEKEFN-KCKTCHSIIA 21 (116)
T ss_dssp CHHHHHHHGG-GTTTTCCEEC
T ss_pred CHHHHHHHHH-cchhhCCCCC
Confidence 3689999998 7999999864
No 65
>2xts_B Cytochrome; oxidoreductase-electron transport complex, SOX system, sulfa oxidation, molybdenum cofactor, heme, electron transfer; HET: MTE HEC; 1.33A {Paracoccus pantotrophus}
Probab=95.13 E-value=0.0032 Score=55.57 Aligned_cols=25 Identities=20% Similarity=0.491 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHhhcccccccc
Q psy10277 46 FDHASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 46 ~D~asLqRG~qVf~~vCaaCHSlky 70 (305)
.+.+++++|.++|.+.|++||+..-
T Consensus 30 ~~~~~~~~G~~Ly~~~Ca~CHG~~G 54 (205)
T 2xts_B 30 PGSGDVATGDALFADNCASCHGDFA 54 (205)
T ss_dssp SCEEEHHHHHHHHHHHTHHHHCTTS
T ss_pred CChhhHHHHHHHHHhhhHHhCCCCC
Confidence 4556799999999999999999765
No 66
>1cxc_A Cytochrome C2; electron transport (cytochrome); HET: HEM; 1.60A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1cxa_A* 1l9b_C* 1l9j_C* 2cxb_A*
Probab=95.13 E-value=0.0061 Score=49.48 Aligned_cols=20 Identities=20% Similarity=0.483 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHhhcccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky 70 (305)
.+.||.++|+ .|++||++..
T Consensus 4 d~~~G~~~F~-~C~~CH~v~~ 23 (124)
T 1cxc_A 4 DPEAGAKAFN-QCQTCHVIVD 23 (124)
T ss_dssp CHHHHHHHGG-GGGGTCCEEC
T ss_pred CHHHHHHHHH-hhhhhcCCCC
Confidence 4689999995 7999999864
No 67
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=95.10 E-value=0.014 Score=59.01 Aligned_cols=35 Identities=23% Similarity=0.422 Sum_probs=27.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhhcccccccccc
Q psy10277 36 KWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFIC 72 (305)
Q Consensus 36 ~w~~~g~~~~~D~asLqRG~qVf~~vCaaCHSlky~~ 72 (305)
+|.-... ..+.+.+++|.++|.++|++||+..-..
T Consensus 580 ~~~~~~~--~~~~~~~~~G~~l~~~~C~~CHg~~g~g 614 (677)
T 1kb0_A 580 GQLLQGV--KYDPAKVEAGTMLYVANCVFCHGVPGVD 614 (677)
T ss_dssp CCCCCCC--CCCGGGHHHHHHHHHHHTHHHHCSTTTS
T ss_pred CCCCCCC--CCChhhHHHHHHHHhhhhhhhCCCCCcC
Confidence 4554442 4678899999999999999999987643
No 68
>1c2n_A Cytochrome C2; electron transport; HET: HEC; NMR {Rhodobacter capsulatus} SCOP: a.3.1.1
Probab=95.08 E-value=0.0084 Score=49.11 Aligned_cols=20 Identities=25% Similarity=0.585 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHhhcccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky 70 (305)
.+.||.++|. .|++||+..-
T Consensus 23 ~~~~G~~lf~-~C~~CH~~~~ 42 (137)
T 1c2n_A 23 DAAKGEKEFN-KCKTCHSIIA 42 (137)
T ss_dssp CHHHHHHHHH-HHTTTCCBCC
T ss_pred ChHHHHHHHH-hHHhhCCCCC
Confidence 3689999999 8999999864
No 69
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=94.94 E-value=0.0073 Score=57.94 Aligned_cols=25 Identities=40% Similarity=0.628 Sum_probs=22.0
Q ss_pred CCHHHHHHHHHHHHHhhcccccccc
Q psy10277 46 FDHASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 46 ~D~asLqRG~qVf~~vCaaCHSlky 70 (305)
.+.+++++|.++|.++|++||+..-
T Consensus 334 ~~~~~~~~G~~ly~~~Ca~CHg~~g 358 (442)
T 2zoo_A 334 NKDEQIRFGQRVYEANCMACHQANG 358 (442)
T ss_dssp SHHHHHHHHHHHHHHHTHHHHCTTS
T ss_pred ccchhhHHHHHHHHhhhHHhCCCCC
Confidence 4678899999999999999999743
No 70
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=94.78 E-value=0.021 Score=57.08 Aligned_cols=18 Identities=50% Similarity=0.840 Sum_probs=16.7
Q ss_pred HHHHHHHHhhcccccccc
Q psy10277 53 RGYEVYKNVCAACHSARF 70 (305)
Q Consensus 53 RG~qVf~~vCaaCHSlky 70 (305)
.|.++|.++|++|||..+
T Consensus 2 ~GkeLv~anCasCHsad~ 19 (489)
T 1pby_A 2 TGEEVLQNACAACHVQHE 19 (489)
T ss_dssp CHHHHHHHTGGGTSCBCT
T ss_pred ChHHHHHhhhHhhcCCCc
Confidence 489999999999999977
No 71
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=94.73 E-value=0.01 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.682 Sum_probs=21.5
Q ss_pred CHHHHHHHHHHHHH--------hhcccccccc
Q psy10277 47 DHASIRRGYEVYKN--------VCAACHSARF 70 (305)
Q Consensus 47 D~asLqRG~qVf~~--------vCaaCHSlky 70 (305)
|.+.+.+|.++|.+ .|++||+..-
T Consensus 96 ~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g 127 (190)
T 1m70_A 96 DPALAKQGEKLFRGGKLDQGMPACTGCHAPNG 127 (190)
T ss_dssp CHHHHHHHHHHHHHCBGGGTBCCSHHHHCTTS
T ss_pred cccchhhHHHHHhCCCcccCCcchhhcCCCCC
Confidence 67899999999999 9999999743
No 72
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=94.48 E-value=0.014 Score=58.86 Aligned_cols=26 Identities=19% Similarity=0.567 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccc
Q psy10277 45 SFDHASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 45 ~~D~asLqRG~qVf~~vCaaCHSlky 70 (305)
..|.+.+++|.++|.++|++||+..-
T Consensus 574 ~~~~~~~~~G~~l~~~~Ca~CHg~~g 599 (668)
T 1kv9_A 574 TAAPEQVQAGKQLYGQFCSVCHGMGT 599 (668)
T ss_dssp CCCHHHHHHHHHHHHHHTHHHHCGGG
T ss_pred CCCHHHHHHHHHHHhhhhHhhCcCCC
Confidence 46899999999999999999999744
No 73
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=94.45 E-value=0.013 Score=59.34 Aligned_cols=26 Identities=38% Similarity=0.701 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHHHHHHhhcccccccc
Q psy10277 45 SFDHASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 45 ~~D~asLqRG~qVf~~vCaaCHSlky 70 (305)
..|.+.+++|.++|.++|++||+..-
T Consensus 589 ~~~~~~~~~G~~ly~~~Ca~CHg~~g 614 (689)
T 1yiq_A 589 SNDTASIEAGAKLYDGYCSQCHGIHA 614 (689)
T ss_dssp CSCHHHHHHHHHHHHHHTHHHHCGGG
T ss_pred CCCHHHHHHHHHHHhhhhhhhCCCCC
Confidence 36889999999999999999999753
No 74
>1i8o_A Cytochrome C2; electron transport, heme, ammonia, oxidized; HET: HEC; 1.15A {Rhodopseudomonas palustris} SCOP: a.3.1.1 PDB: 1fj0_A* 1hh7_A* 1i8p_A*
Probab=94.44 E-value=0.014 Score=45.85 Aligned_cols=16 Identities=38% Similarity=0.918 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhccccc
Q psy10277 51 IRRGYEVYKNVCAACHS 67 (305)
Q Consensus 51 LqRG~qVf~~vCaaCHS 67 (305)
+.+|.++|. .|++||+
T Consensus 3 ~~~G~~lf~-~C~~CH~ 18 (114)
T 1i8o_A 3 AKAGEAVFK-QCMTCHR 18 (114)
T ss_dssp HHHHHHHHH-HHTTTCC
T ss_pred HHHHHHHHH-hHHhhCC
Confidence 679999996 8999999
No 75
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=94.23 E-value=0.0088 Score=49.68 Aligned_cols=25 Identities=24% Similarity=0.683 Sum_probs=21.0
Q ss_pred CCHHHHHHHHHHHHH--------hhcccccccc
Q psy10277 46 FDHASIRRGYEVYKN--------VCAACHSARF 70 (305)
Q Consensus 46 ~D~asLqRG~qVf~~--------vCaaCHSlky 70 (305)
.|.+.+.+|.++|.+ .|++||+..-
T Consensus 95 ~~~~~~~~G~~l~~~~~~~~~~~~C~~CHg~~g 127 (183)
T 1h1o_A 95 IKHAGAKEGKAIFNQGVTNEQIPACMECHGSDG 127 (183)
T ss_dssp CCCTTHHHHHHHHHHCBGGGTBCCTHHHHCTTS
T ss_pred CchhhHHhHHHHHHcCCcccCCCcchhhCCCCC
Confidence 356678999999999 9999999643
No 76
>1c52_A Cytochrome-C552; electron transport protein, MAD, thermostability; HET: HEM; 1.28A {Thermus thermophilus} SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A* 1dt1_A*
Probab=94.19 E-value=0.0087 Score=48.16 Aligned_cols=17 Identities=35% Similarity=0.852 Sum_probs=15.0
Q ss_pred HHHHHHHHhhcccccccc
Q psy10277 53 RGYEVYKNVCAACHSARF 70 (305)
Q Consensus 53 RG~qVf~~vCaaCHSlky 70 (305)
+|.++|.+ |++||+..-
T Consensus 3 ~G~~ly~~-Ca~CHg~~g 19 (131)
T 1c52_A 3 DGAKIYAQ-CAGCHQQNG 19 (131)
T ss_dssp CHHHHTHH-HHHHHCTTS
T ss_pred cHHHHHHH-HHHhcCCCC
Confidence 79999999 999999643
No 77
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=94.01 E-value=0.0067 Score=50.43 Aligned_cols=21 Identities=29% Similarity=0.468 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHhhcccccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSlky 70 (305)
+++.||.++| +.|++||+..-
T Consensus 4 ~~~~~G~~l~-~~Ca~CHg~~g 24 (183)
T 1h1o_A 4 ADAPAPYRVS-SDCMVCHGMTG 24 (183)
T ss_dssp --------CG-GGTHHHHCBTT
T ss_pred ccHHHHHHHH-hHHHHhcCCCC
Confidence 5688999999 99999998764
No 78
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=93.68 E-value=0.032 Score=55.97 Aligned_cols=19 Identities=26% Similarity=0.588 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhcccccccc
Q psy10277 52 RRGYEVYKNVCAACHSARF 70 (305)
Q Consensus 52 qRG~qVf~~vCaaCHSlky 70 (305)
+.|.++|.++|++|||..+
T Consensus 2 a~Gk~LF~~NCAaCHGaga 20 (494)
T 1jmx_A 2 EQGPSLLQNKCMGCHIPEG 20 (494)
T ss_dssp CCHHHHHHHHHBTTBCEEE
T ss_pred chhhHHHhhhhhhhcCCCc
Confidence 4699999999999999755
No 79
>1gks_A Cytochrome C551; halophilic purple phototrophic bacterium, electron transport; HET: HEM; NMR {Halorhodospira halophila} SCOP: a.3.1.1
Probab=93.56 E-value=0.015 Score=42.62 Aligned_cols=18 Identities=33% Similarity=0.863 Sum_probs=15.1
Q ss_pred HHHHHHHH----hhcccccccc
Q psy10277 53 RGYEVYKN----VCAACHSARF 70 (305)
Q Consensus 53 RG~qVf~~----vCaaCHSlky 70 (305)
.|.++|.+ .|++||+..-
T Consensus 1 ~G~~ly~~g~~~~C~~CHg~~g 22 (78)
T 1gks_A 1 DGESIYINGTAPTCSSCHDRGV 22 (78)
T ss_dssp CHHHHHHTSSSSCSHHHHTTTG
T ss_pred CHHHHHhhccccchhhhCCCCC
Confidence 38899997 9999999743
No 80
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=93.48 E-value=0.022 Score=41.24 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.2
Q ss_pred HHHHHH-Hhhccccccc
Q psy10277 54 GYEVYK-NVCAACHSAR 69 (305)
Q Consensus 54 G~qVf~-~vCaaCHSlk 69 (305)
|.++|. +.|++||+..
T Consensus 1 ~~~l~~~~~C~~CHg~~ 17 (79)
T 2d0s_A 1 DEALAKAKGCMACHAID 17 (79)
T ss_dssp CHHHHHHTTGGGTCCSS
T ss_pred CHhHHhcCCChhhcCCC
Confidence 578996 5899999974
No 81
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=93.08 E-value=0.055 Score=45.75 Aligned_cols=24 Identities=29% Similarity=0.707 Sum_probs=21.2
Q ss_pred CCHHHHHHHHHHHHHhhccccccc
Q psy10277 46 FDHASIRRGYEVYKNVCAACHSAR 69 (305)
Q Consensus 46 ~D~asLqRG~qVf~~vCaaCHSlk 69 (305)
.|.+.+.+|.++|...|++||+..
T Consensus 85 ~~~~~~~~g~~~~~~~Ca~CHg~~ 108 (174)
T 3vrd_A 85 FDKALVAKGTKLHDKYCEKCHVES 108 (174)
T ss_dssp CCGGGHHHHHHHHHHHTTTTSGGG
T ss_pred cchhhhccchhhhcchhHhhcCcC
Confidence 567789999999999999999863
No 82
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=92.18 E-value=0.036 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.548 Sum_probs=20.9
Q ss_pred CCHHHHHHHHHHHHHh-------hccccccc
Q psy10277 46 FDHASIRRGYEVYKNV-------CAACHSAR 69 (305)
Q Consensus 46 ~D~asLqRG~qVf~~v-------CaaCHSlk 69 (305)
-+.+..+||.++|... |++||+..
T Consensus 157 ~~~~~~~~G~~lF~~~~G~~~~aCa~CHg~~ 187 (264)
T 2c1d_A 157 PAAPYWEHGKEIYYTRYGQLEMSCANCHEDN 187 (264)
T ss_dssp GGHHHHHHHHHHHHCCBTTTTBCHHHHHTTS
T ss_pred cccHHHHHHHHHHHhhcCCCCCcccccCCCC
Confidence 4568899999999986 99999964
No 83
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=92.11 E-value=0.062 Score=50.74 Aligned_cols=22 Identities=32% Similarity=0.659 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHH-hhcccccccc
Q psy10277 49 ASIRRGYEVYKN-VCAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~-vCaaCHSlky 70 (305)
++.+||+++|.. .|++||+...
T Consensus 186 ~~~~~G~~lF~~~~Ca~CH~~~~ 208 (328)
T 1zzh_A 186 ADEKAGLKLFIDTGCAACHNGIN 208 (328)
T ss_dssp HHHHHHHHHHHHHTGGGTSCBTT
T ss_pred HHHHHHHHHHhcCCccccCCCcc
Confidence 578999999998 8999999654
No 84
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=92.08 E-value=0.063 Score=50.60 Aligned_cols=22 Identities=27% Similarity=0.682 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHH-hhcccccccc
Q psy10277 49 ASIRRGYEVYKN-VCAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~-vCaaCHSlky 70 (305)
++.+||+++|.+ .|++||+...
T Consensus 183 ~~~~~G~~lF~~~~Ca~CH~~~~ 205 (323)
T 2vhd_A 183 AQQKKGLKAFMDSGCSACHNGIN 205 (323)
T ss_dssp HHHHHHHHHHHHTTGGGTSCBTT
T ss_pred HHHHHHHHHHhcCCccccCCCcc
Confidence 577999999999 8999999654
No 85
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=92.03 E-value=0.064 Score=51.02 Aligned_cols=22 Identities=27% Similarity=0.603 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHH-hhcccccccc
Q psy10277 49 ASIRRGYEVYKN-VCAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~-vCaaCHSlky 70 (305)
++.+||+++|.+ .|++||+...
T Consensus 197 ~~~~~G~~lF~~~~Ca~CH~~~~ 219 (338)
T 2c1v_A 197 DQEKRGLQAFMETGCTACHYGVN 219 (338)
T ss_dssp HHHHHHHHHHHHHTGGGTSCBTT
T ss_pred HHHHHHHHHHhCCCccccCCCcc
Confidence 577999999998 8999999653
No 86
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=91.99 E-value=0.066 Score=50.02 Aligned_cols=22 Identities=27% Similarity=0.741 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHH-hhccccccc
Q psy10277 48 HASIRRGYEVYKN-VCAACHSAR 69 (305)
Q Consensus 48 ~asLqRG~qVf~~-vCaaCHSlk 69 (305)
.++.+||+++|.. .|++||+..
T Consensus 168 t~~~~~G~~LF~~~gCa~CH~~~ 190 (308)
T 1iqc_A 168 NQDELEGYNLFKGSGCVQCHNGP 190 (308)
T ss_dssp CHHHHHHHHHHHHHTGGGTSCTT
T ss_pred CHHHHHHHHHHcCCChhhcCCCc
Confidence 3678999999998 799999864
No 87
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=91.49 E-value=0.08 Score=49.89 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHH-hhcccccccc
Q psy10277 49 ASIRRGYEVYKN-VCAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~-vCaaCHSlky 70 (305)
++.+||+++|.+ .|++||+...
T Consensus 183 ~~~~~G~~lF~~~gCa~CH~~~~ 205 (326)
T 1nml_A 183 ESEKEGLALFMDRGCTACHSGVN 205 (326)
T ss_dssp HHHHHHHHHHHHTTGGGTSCBTT
T ss_pred HHHHHHHHHHccCCccccCCCCC
Confidence 677999999997 6999999643
No 88
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=91.40 E-value=0.041 Score=50.00 Aligned_cols=24 Identities=29% Similarity=0.672 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHHHHH-------hhccccccc
Q psy10277 46 FDHASIRRGYEVYKN-------VCAACHSAR 69 (305)
Q Consensus 46 ~D~asLqRG~qVf~~-------vCaaCHSlk 69 (305)
-+.+..+||.++|.. .|++||+-.
T Consensus 154 ~~~~~~~~G~~lF~~~~g~~~~~Ca~CHg~~ 184 (261)
T 1h32_A 154 PAQSTWEKGREIYYTRYGQLDLSCASCHEQY 184 (261)
T ss_dssp GGHHHHHHHHHHHTCCBTTTTBCHHHHHTTS
T ss_pred cccHHHHHHHHHHHHhcCCCCCcccccCCCC
Confidence 457889999999998 599999963
No 89
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=90.67 E-value=0.11 Score=49.34 Aligned_cols=23 Identities=26% Similarity=0.829 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHh-hcccccccc
Q psy10277 48 HASIRRGYEVYKNV-CAACHSARF 70 (305)
Q Consensus 48 ~asLqRG~qVf~~v-CaaCHSlky 70 (305)
.++.+||+++|.+. |++||+-..
T Consensus 176 t~~e~~G~~LF~~~gCa~CH~g~~ 199 (320)
T 3o5c_A 176 SGDAKAGYQLFKDKGCVSCHNGPA 199 (320)
T ss_dssp CHHHHHHHHHHHHTTGGGTSCTTT
T ss_pred CHHHHHHHHHHccCCcccccCCcc
Confidence 45789999999887 999999644
No 90
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=89.89 E-value=0.14 Score=49.19 Aligned_cols=20 Identities=25% Similarity=0.723 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHh-hcccccc
Q psy10277 49 ASIRRGYEVYKNV-CAACHSA 68 (305)
Q Consensus 49 asLqRG~qVf~~v-CaaCHSl 68 (305)
++-+||+++|... |++||+-
T Consensus 205 ~~e~rG~~LF~~~~Ca~CH~g 225 (345)
T 3hq9_A 205 GKQTAGLKLFLDKGCVACHGG 225 (345)
T ss_dssp HHHHHHHHHHHHTTGGGTSCT
T ss_pred HHHHHHHHHHccCCcccccCC
Confidence 4678999999876 9999995
No 91
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=88.46 E-value=0.21 Score=47.70 Aligned_cols=22 Identities=32% Similarity=0.712 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHh-hcccccccc
Q psy10277 49 ASIRRGYEVYKNV-CAACHSARF 70 (305)
Q Consensus 49 asLqRG~qVf~~v-CaaCHSlky 70 (305)
++-+||+++|... |++||+-..
T Consensus 200 ~~e~rG~~LF~~~gC~~CH~g~~ 222 (341)
T 4aan_A 200 STAEQGLALFLDKGCAACHSGVN 222 (341)
T ss_dssp HHHHHHHHHHHHHTGGGTSCBTT
T ss_pred HHHHHHHHhcCcccCCCCCCCcc
Confidence 5678999999875 999998643
No 92
>1m70_A Cytochrome C4; electron transport, diheme protein; HET: HEC; 1.25A {Pseudomonas stutzeri} SCOP: a.3.1.4 a.3.1.4 PDB: 1etp_A* 1m6z_A*
Probab=86.40 E-value=0.11 Score=43.22 Aligned_cols=21 Identities=29% Similarity=0.436 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHhhccccccccc
Q psy10277 50 SIRRGYEVYKNVCAACHSARFI 71 (305)
Q Consensus 50 sLqRG~qVf~~vCaaCHSlky~ 71 (305)
++.+|.++ .++|++||+..-.
T Consensus 3 ~~~~G~~l-~~~C~~CHg~~g~ 23 (190)
T 1m70_A 3 DAEAGQGK-VAVCGACHGVDGN 23 (190)
T ss_dssp CHHHHHTT-CGGGHHHHCTTSC
T ss_pred chhHHHHH-HhHHHhhcCCCCC
Confidence 47899999 7899999987653
No 93
>1e8e_A Cytochrome C''; oxidoreductase(cytochrome), ligand detachment, redox-BOHR effect, paramagnetic; HET: HEC; NMR {Methylophilus methylotrophus} SCOP: a.3.1.1 PDB: 1gu2_A* 1oae_A*
Probab=85.31 E-value=0.036 Score=46.41 Aligned_cols=26 Identities=27% Similarity=0.634 Sum_probs=20.3
Q ss_pred CCCHHHHHHHHHHHH----------Hhhcccccccc
Q psy10277 45 SFDHASIRRGYEVYK----------NVCAACHSARF 70 (305)
Q Consensus 45 ~~D~asLqRG~qVf~----------~vCaaCHSlky 70 (305)
.|+.++++||.++|. -.|++||+...
T Consensus 22 ~F~~~~A~rGkalf~~~~~~~~g~~~sCaSCH~~~~ 57 (124)
T 1e8e_A 22 MYEAPSITDGKIFFNRKFKTPSGKEAACASCHTNNP 57 (124)
T ss_dssp TCCCCCSSSTTGGGTCCEEETTTEEECTTTTSCSCT
T ss_pred CcchhhHHHHHHHHhccccccCCCCCcccccCCCCC
Confidence 355567899999994 47999999644
No 94
>1dw0_A Cytochrome C; asparagine ligation, oxygen binding, disulfide bridge, oxygen storage/transport complex; HET: HEM; 1.82A {Rhodobacter sphaeroides} SCOP: a.3.1.1 PDB: 1dw1_A* 1dw2_A* 1dw3_A*
Probab=85.30 E-value=0.17 Score=41.54 Aligned_cols=21 Identities=29% Similarity=0.748 Sum_probs=17.6
Q ss_pred HHHHHHHHHHH----------hhcccccccc
Q psy10277 50 SIRRGYEVYKN----------VCAACHSARF 70 (305)
Q Consensus 50 sLqRG~qVf~~----------vCaaCHSlky 70 (305)
++.||.++|.+ .|++||+...
T Consensus 21 ~a~RG~alf~~~~~~~~g~~pSCaSCHg~~p 51 (112)
T 1dw0_A 21 DAERGRALFLSTQTGGKPDTPSCTTCHGADV 51 (112)
T ss_dssp CHHHHHHHHHCCCSSSCTTCCSTHHHHCSST
T ss_pred cHHHHHHHHhhhcccCCCCCCcccccCCCCc
Confidence 68899999943 7999999755
No 95
>2c1d_A SOXA; sulfur oxidation, cytochrome-C-type, oxidoreductase; HET: HEC; 1.92A {Paracoccus denitrificans}
Probab=84.49 E-value=0.28 Score=44.49 Aligned_cols=22 Identities=27% Similarity=0.712 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHH-------hhccccccc
Q psy10277 48 HASIRRGYEVYKN-------VCAACHSAR 69 (305)
Q Consensus 48 ~asLqRG~qVf~~-------vCaaCHSlk 69 (305)
...++.|.++|.+ .|++||+..
T Consensus 59 ~~~v~~G~~LF~~~~~~~~~sCasCHG~~ 87 (264)
T 2c1d_A 59 MVFVDRGLDKWNAAMGVNGESCASCHQGP 87 (264)
T ss_dssp HHHHHHHHHHHHSCCSTTSCCHHHHHCSG
T ss_pred HHHHHHHHHHHcCCCCCCCcChhhcCCCC
Confidence 3468999999999 999999874
No 96
>1jmx_A Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jmz_A*
Probab=84.32 E-value=0.2 Score=50.24 Aligned_cols=26 Identities=19% Similarity=0.345 Sum_probs=20.0
Q ss_pred HHHHHHHHHHhhccccccccc-ccccc
Q psy10277 51 IRRGYEVYKNVCAACHSARFI-CYRNL 76 (305)
Q Consensus 51 LqRG~qVf~~vCaaCHSlky~-~y~~l 76 (305)
+.+|.++|.++|++||+..-. .+||+
T Consensus 89 va~G~eLF~~NCAaCHG~dGkG~qRr~ 115 (494)
T 1jmx_A 89 VEQFDTQLSETCGRCHSGARVALQRRP 115 (494)
T ss_dssp CCCCCHHHHHHHSSSSCSHHHHTEECC
T ss_pred hhhHHHHHhhhhhhcCCcccCccccCC
Confidence 568999999999999998652 33444
No 97
>3sjl_A Methylamine utilization protein MAUG; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 3sle_A* 3svw_A* 3sxt_A* 3l4o_A* 3pxs_A* 3pxt_A* 3pxw_A* 3l4m_A* 3sws_A* 3orv_A* 3rmz_A* 3rlm_A* 3rn0_A* 3rn1_A*
Probab=83.69 E-value=0.51 Score=45.67 Aligned_cols=21 Identities=33% Similarity=0.667 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHH-hhccccccc
Q psy10277 49 ASIRRGYEVYKN-VCAACHSAR 69 (305)
Q Consensus 49 asLqRG~qVf~~-vCaaCHSlk 69 (305)
++-+||+++|.. .|++||+..
T Consensus 187 ~~e~rG~~LF~~~~C~~CH~g~ 208 (373)
T 3sjl_A 187 PLEEFGYTVFITWNCRLCHMQR 208 (373)
T ss_dssp HHHHHHHHHHHHSGGGGTSSSC
T ss_pred HHHHHHHHHHCcCCCccccCCc
Confidence 456899999977 799999953
No 98
>1h32_A SOXA, diheme cytochrome C; electron transfer, sulfur cycle, soxax complex, thiosulfate oxidation, cysteine persulfide heme ligand; HET: HEC; 1.5A {Rhodovulum sulfidophilum} SCOP: a.3.1.8 a.3.1.8 PDB: 1h31_A* 1h33_A* 2oz1_A*
Probab=82.33 E-value=0.31 Score=44.22 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHH-------hhccccccc
Q psy10277 48 HASIRRGYEVYKN-------VCAACHSAR 69 (305)
Q Consensus 48 ~asLqRG~qVf~~-------vCaaCHSlk 69 (305)
...++.|.++|.+ .|++||+..
T Consensus 55 ~~~v~~G~~LF~~~~~~~~~sCasCHg~~ 83 (261)
T 1h32_A 55 MVFVEEARAVWDRPEGTEGKACADCHGAV 83 (261)
T ss_dssp HHHHHHHHHHHTSCCSTTCCCHHHHHCSH
T ss_pred HHHHHHHHHHHcCCCCCCCcChhHhCcCC
Confidence 3578999999999 999999863
No 99
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=81.79 E-value=0.28 Score=45.28 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=20.0
Q ss_pred CCHHHHHHHHHHHH-------Hhhccccccc
Q psy10277 46 FDHASIRRGYEVYK-------NVCAACHSAR 69 (305)
Q Consensus 46 ~D~asLqRG~qVf~-------~vCaaCHSlk 69 (305)
.|++.+.+|.++|. ..|++||+..
T Consensus 160 ~~~~~~~~G~~lf~~r~G~~~~~Ca~CHg~~ 190 (275)
T 3oa8_A 160 QEKEMYAIGEALFFRRSSINDFSCSTCHGAA 190 (275)
T ss_dssp HHHHHHHHHHHHHHCCBTTTTBCHHHHHSSS
T ss_pred ccHHHHHHHHHHHHhccCCCCCchHhhCCCc
Confidence 46788999999993 4799999964
No 100
>3vrd_A FCCA subunit, flavocytochrome C heme subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_C*
Probab=81.35 E-value=0.37 Score=40.56 Aligned_cols=37 Identities=24% Similarity=0.310 Sum_probs=22.9
Q ss_pred HHHHHHhhccccccccc----ccccccCCCCCHHHHHHHHHHh
Q psy10277 55 YEVYKNVCAACHSARFI----CYRNLVGVSHTEAEAKREAEEI 93 (305)
Q Consensus 55 ~qVf~~vCaaCHSlky~----~y~~l~~~g~t~~evk~~a~~~ 93 (305)
.++|.++|++||+..-. .|-+|. |.+++.+.+...++
T Consensus 4 g~~~a~~C~~CHg~~G~~~~~~~P~La--G~~~~~i~~~l~~~ 44 (174)
T 3vrd_A 4 AEMLANNCAGCHGTRGNSAGPASPSIA--QMDPAVFVEVMEQF 44 (174)
T ss_dssp HHHHHGGGHHHHCGGGCCCCSSSCCCT--TCCHHHHHHHHHHH
T ss_pred HHHHHhhHHHhCCCcCCCCCCCCCCcC--CCCHHHHHHHHHHh
Confidence 46788999999987532 233442 45666665544444
No 101
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron transport; HET: HEM CIT; 2.20A {Marinobacter hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB: 1rz5_A* 1rz6_A*
Probab=80.64 E-value=0.9 Score=42.72 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHH---------hhcccccccc
Q psy10277 46 FDHASIRRGYEVYKN---------VCAACHSARF 70 (305)
Q Consensus 46 ~D~asLqRG~qVf~~---------vCaaCHSlky 70 (305)
.+.+.++.|.++|-. .|++||....
T Consensus 26 ~~~~~v~lGk~LF~D~~LS~~~~~sCasCH~~~~ 59 (326)
T 1nml_A 26 LTQAKVELGKMEFFEPRLSSSHLISCNTCHNVGL 59 (326)
T ss_dssp CCHHHHHHHHHHHTCGGGSTTSCCCHHHHSCTTT
T ss_pred CCHHHHHHHHHHhcCcccccCCCccchhcCCccc
Confidence 789999999999987 5999999754
No 102
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme, oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus pantotrophus} PDB: 2c1u_A*
Probab=77.08 E-value=0.87 Score=43.20 Aligned_cols=26 Identities=19% Similarity=0.548 Sum_probs=22.6
Q ss_pred CCCHHHHHHHHHHHHH---------hhcccccccc
Q psy10277 45 SFDHASIRRGYEVYKN---------VCAACHSARF 70 (305)
Q Consensus 45 ~~D~asLqRG~qVf~~---------vCaaCHSlky 70 (305)
-.+.+.++.|.++|-. .|++||....
T Consensus 39 ~~~~~~v~lGk~LF~D~~LS~~~~~SCasCH~~~~ 73 (338)
T 2c1v_A 39 PLTAEKIELGKVLFFDPRMSSSGLISCQTCHNVGL 73 (338)
T ss_dssp ECCHHHHHHHHHHHTCGGGSTTSSCCHHHHSBTTT
T ss_pred CCCHHHHHHHHHHhcCcccccCCCcchhhcCCccc
Confidence 3688999999999987 6999999754
No 103
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC; 2.70A {Rhodobacter capsulatus}
Probab=76.38 E-value=0.91 Score=42.74 Aligned_cols=25 Identities=20% Similarity=0.538 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHHh---------hcccccccc
Q psy10277 46 FDHASIRRGYEVYKNV---------CAACHSARF 70 (305)
Q Consensus 46 ~D~asLqRG~qVf~~v---------CaaCHSlky 70 (305)
.+.+.++.|.++|-.- |++||....
T Consensus 29 ~~~~~v~lGk~LF~D~~LS~~~~~SCasCH~~~~ 62 (328)
T 1zzh_A 29 VTRDKIDLGAMLFFDPRMSKSGVFSCQSCHNVGL 62 (328)
T ss_dssp CTTHHHHHHHHHHHCGGGSTTSSCCHHHHSBTTT
T ss_pred CCHHHHHHHHHHhCCcccccCCCcchhhcCCccc
Confidence 6788999999999766 999999754
No 104
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding, oxidoreduc electron transport; HET: HEC; 2.3A {Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB: 1eb7_A*
Probab=75.82 E-value=0.87 Score=42.79 Aligned_cols=25 Identities=16% Similarity=0.461 Sum_probs=22.1
Q ss_pred CCHHHHHHHHHHHHHh---------hcccccccc
Q psy10277 46 FDHASIRRGYEVYKNV---------CAACHSARF 70 (305)
Q Consensus 46 ~D~asLqRG~qVf~~v---------CaaCHSlky 70 (305)
.+.+.++.|.++|-.- |++||....
T Consensus 26 ~~~~~v~lGk~LF~d~~LS~~~~~sCasCH~~~~ 59 (323)
T 2vhd_A 26 ISEQQRELGKKLFFDPRLSRSHVLSCNTCHNVGT 59 (323)
T ss_dssp CCHHHHHHHHHHHTCGGGSSSSCCCHHHHSCGGG
T ss_pred CCHHHHHHHHHHhcCccccCCCCcchhhcCCCcc
Confidence 6889999999999877 999999754
No 105
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=75.77 E-value=0.81 Score=42.17 Aligned_cols=20 Identities=15% Similarity=0.409 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHH-------hhcccccc
Q psy10277 49 ASIRRGYEVYKN-------VCAACHSA 68 (305)
Q Consensus 49 asLqRG~qVf~~-------vCaaCHSl 68 (305)
-.+.+|.++|.+ .|++||+.
T Consensus 51 ~~v~~G~~lf~~~~g~n~~~Ca~CHg~ 77 (275)
T 3oa8_A 51 LNVDRGEVLWSEPRGTRNVSLETCDLG 77 (275)
T ss_dssp HHHHHHHHHHTCCBTTTTBCSTTCBSS
T ss_pred HHHHHHHHHHcCcCCCCCCcccccCCc
Confidence 579999999997 79999973
No 106
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision, ammonia-oxidizing bacteria, oxidoreductase; HET: HEM; 1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Probab=74.47 E-value=1.9 Score=40.08 Aligned_cols=26 Identities=15% Similarity=0.345 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHHHH---------Hhhcccccccc
Q psy10277 45 SFDHASIRRGYEVYK---------NVCAACHSARF 70 (305)
Q Consensus 45 ~~D~asLqRG~qVf~---------~vCaaCHSlky 70 (305)
..+.+.++.|.++|- ..|++||....
T Consensus 13 ~~~~~~v~lGk~LF~D~~LS~~~~~SCasCH~~~~ 47 (308)
T 1iqc_A 13 PENADMAELGKMLFFDPRLSKSGFISCNSCHNLSM 47 (308)
T ss_dssp CSSHHHHHHHHHHHTCGGGSSSSCCCHHHHSBTTT
T ss_pred CCCHHHHHHHHHHhcCccccCCCCCCccccCCccc
Confidence 368999999999996 45999999754
No 107
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A {Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Probab=71.43 E-value=2.2 Score=40.76 Aligned_cols=26 Identities=19% Similarity=0.517 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHH---------hhcccccccc
Q psy10277 45 SFDHASIRRGYEVYKN---------VCAACHSARF 70 (305)
Q Consensus 45 ~~D~asLqRG~qVf~~---------vCaaCHSlky 70 (305)
..+.+.++.|.++|-. .|++||....
T Consensus 47 ~~~~~~v~lG~~LF~d~rLS~~~~~sCasCH~~~~ 81 (345)
T 3hq9_A 47 PASPVKVELGKMLYFDPRLSASHLISCNTCHNVGL 81 (345)
T ss_dssp CCCHHHHHHHHHHHHCGGGSTTSCCCHHHHSBTTT
T ss_pred CCCHHHHHHHHHHhCCcccCCCCCCchhhcCChhh
Confidence 3789999999999986 7999999864
No 108
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=69.85 E-value=1.9 Score=34.90 Aligned_cols=22 Identities=32% Similarity=0.634 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHhhcccccc
Q psy10277 47 DHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 47 D~asLqRG~qVf~~vCaaCHSl 68 (305)
|..+++..+.--.+.|.+||..
T Consensus 101 D~~~~~~a~~~v~~sCkaCH~~ 122 (127)
T 2ykz_A 101 DLDKLRAAFGDVGASCKACHDA 122 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888889999999973
No 109
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=69.69 E-value=1.9 Score=34.96 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHhhcccccc
Q psy10277 47 DHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 47 D~asLqRG~qVf~~vCaaCHSl 68 (305)
|.++++..+.--.+.|.+||..
T Consensus 104 D~~~~~~a~~~v~~sCkaCH~~ 125 (129)
T 2j8w_A 104 DFAQIKAAVGETGGACKGCHDK 125 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888889999999973
No 110
>1mqv_A Cytochrome C'; four-helix bundle, electron transport; HET: HEM; 1.78A {Rhodopseudomonas palustris} SCOP: a.24.3.2 PDB: 1a7v_A*
Probab=69.54 E-value=2 Score=34.77 Aligned_cols=22 Identities=27% Similarity=0.533 Sum_probs=20.2
Q ss_pred CHHHHHHHHHHHHHhhcccccc
Q psy10277 47 DHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 47 D~asLqRG~qVf~~vCaaCHSl 68 (305)
|.++++..+.--.+.|.+||..
T Consensus 98 d~~~~~~a~~~v~~sCkaCH~~ 119 (125)
T 1mqv_A 98 DEASLKANIGGVLGNCKSCHDD 119 (125)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhHHHHHHHH
Confidence 8889999999999999999974
No 111
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=69.16 E-value=2 Score=34.98 Aligned_cols=22 Identities=27% Similarity=0.564 Sum_probs=18.6
Q ss_pred CHHHHHHHHHHHHHhhcccccc
Q psy10277 47 DHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 47 D~asLqRG~qVf~~vCaaCHSl 68 (305)
|.++++..+.--.+.|.+||..
T Consensus 103 D~~~~~~a~~~v~~~CkaCH~~ 124 (129)
T 1cpq_A 103 DGAAFGAALQKLGGTCKACHDD 124 (129)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhHHHHHHHH
Confidence 5777888888888999999973
No 112
>3vrc_A Cytochrome C'; C-type cytpchrome, electron transport; HET: HEC PG4; 1.00A {Thermochromatium tepidum} PDB: 1bbh_A*
Probab=64.77 E-value=2.7 Score=34.56 Aligned_cols=21 Identities=19% Similarity=0.632 Sum_probs=18.8
Q ss_pred CHHHHHHHHHHHHHhhccccc
Q psy10277 47 DHASIRRGYEVYKNVCAACHS 67 (305)
Q Consensus 47 D~asLqRG~qVf~~vCaaCHS 67 (305)
|.++++..+.--.+.|-+||.
T Consensus 106 d~~~~~~a~~~vg~tCkaCH~ 126 (131)
T 3vrc_A 106 EANAVKSAFADVGAACKACHQ 126 (131)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHH
Confidence 678899999999999999996
No 113
>2fw5_A DHC, diheme cytochrome C; electron transfer, electron transport; HET: HEM; 2.00A {Rhodobacter sphaeroides}
Probab=64.23 E-value=2.4 Score=35.92 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=14.0
Q ss_pred HHHHHHHhhcccccccc
Q psy10277 54 GYEVYKNVCAACHSARF 70 (305)
Q Consensus 54 G~qVf~~vCaaCHSlky 70 (305)
+.++|.+.|++||.+-.
T Consensus 16 ~~~~y~~~C~~CH~a~p 32 (139)
T 2fw5_A 16 TDPLTRTECSACHMAYP 32 (139)
T ss_dssp CCHHHHHHTTSSSCCCC
T ss_pred cHHHHHHHHHhccCCCC
Confidence 46799999999998743
No 114
>2fwt_A DHC, diheme cytochrome C; diheme protein, electron transfer, sphaeroides heme protein, oxygen-binding, electron transpor; HET: HEM; 1.85A {Rhodobacter sphaeroides}
Probab=63.82 E-value=2.4 Score=35.16 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=13.7
Q ss_pred HHHHHHHhhcccccccc
Q psy10277 54 GYEVYKNVCAACHSARF 70 (305)
Q Consensus 54 G~qVf~~vCaaCHSlky 70 (305)
..++|.+.|++||.+-.
T Consensus 5 ~~~~y~~~C~~CH~a~p 21 (125)
T 2fwt_A 5 TDPLTRTECSACHMAYP 21 (125)
T ss_dssp CCHHHHHHTSSSSCCCC
T ss_pred cHHHHHHHHHhccCCCC
Confidence 35689999999998743
No 115
>2ccy_A Cytochrome C; electron transport (heme protein); HET: HEM; 1.67A {Phaeospirillum molischianum} SCOP: a.24.3.2
Probab=61.60 E-value=2.6 Score=34.26 Aligned_cols=20 Identities=25% Similarity=0.584 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHhhcccccc
Q psy10277 49 ASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 49 asLqRG~qVf~~vCaaCHSl 68 (305)
++++..+.--.+.|.+||..
T Consensus 105 ~~~~~a~~~v~~~CkaCH~~ 124 (128)
T 2ccy_A 105 DALKAQAAATGKVCKACHEE 124 (128)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHH
Confidence 67788888888999999973
No 116
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide, oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Probab=60.91 E-value=4.8 Score=38.01 Aligned_cols=25 Identities=16% Similarity=0.458 Sum_probs=21.5
Q ss_pred CCCHHHHHHHHHHHHH---------hhccccccc
Q psy10277 45 SFDHASIRRGYEVYKN---------VCAACHSAR 69 (305)
Q Consensus 45 ~~D~asLqRG~qVf~~---------vCaaCHSlk 69 (305)
..+.+.++-|.++|-. .|++||...
T Consensus 21 ~~~~~kv~LGk~LFfD~rLS~~~~~SCasCH~p~ 54 (320)
T 3o5c_A 21 ITEPEKVELGKMLFFEPRLSKSGFISCNSCHNLS 54 (320)
T ss_dssp CSCHHHHHHHHHHHTCGGGSTTSCCCHHHHSCTT
T ss_pred CCCHHHHHHHHHHhCCcccCCCCCCCccccCCcc
Confidence 4789999999999976 499999764
No 117
>1pby_A Quinohemoprotein amine dehydrogenase 60 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: a.3.1.7 a.3.1.7 b.1.18.14 b.1.18.14 b.61.4.1 PDB: 1jju_A*
Probab=55.16 E-value=2.7 Score=42.16 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=18.1
Q ss_pred HHHHHHHHHhhccccccccc-ccccc
Q psy10277 52 RRGYEVYKNVCAACHSARFI-CYRNL 76 (305)
Q Consensus 52 qRG~qVf~~vCaaCHSlky~-~y~~l 76 (305)
.+|-++|.+.|+.||+.--+ -|||+
T Consensus 90 ~~ggelfr~nCA~CHn~A~~~~qRR~ 115 (489)
T 1pby_A 90 EGPDTSMTQTCGRCHSYARVALQRRT 115 (489)
T ss_dssp CCSSHHHHHHHSSSSCTHHHHTEEEC
T ss_pred cCchhhHHhhHhhhCCchhhhhccCC
Confidence 44667999999999997543 34554
No 118
>3de8_A Soluble cytochrome B562; Cu-stabilized dimeric superstructure, electron transport, heme, iron, metal-binding, periplasm, transport; HET: HEM; 1.72A {Escherichia coli} SCOP: a.24.3.1 PDB: 2qla_A* 3de9_A* 3c62_A* 3c63_A* 2bc5_A* 3l1m_A* 1qq3_A* 1apc_A 1qpu_A* 256b_A* 3foo_A* 3fop_A* 3nmi_A* 3nmj_A* 3nmk_A* 1lm3_B* 1m6t_A 1yyj_A 1yyx_A 3hnk_A* ...
Probab=54.02 E-value=4.6 Score=31.59 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=18.7
Q ss_pred CHHHHHHHHHHHHHhhccccc
Q psy10277 47 DHASIRRGYEVYKNVCAACHS 67 (305)
Q Consensus 47 D~asLqRG~qVf~~vCaaCHS 67 (305)
|..+++..++-....|-+||.
T Consensus 83 d~~~~k~a~~~v~~~Ck~CH~ 103 (106)
T 3de8_A 83 KVKEAQAAAEQLKTTCNACHQ 103 (106)
T ss_dssp CHHHHHHHHHHTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 667889999999999999995
No 119
>1s05_A Cytochrome C-556, C556; THis is A model obtained by -restrained modeling and minimization., electron transport; HET: HEM; NMR {Rhodopseudomonas palustris} SCOP: a.24.3.2
Probab=51.66 E-value=2.4 Score=34.65 Aligned_cols=22 Identities=18% Similarity=0.564 Sum_probs=18.9
Q ss_pred CHHHHHHHHHHHHHhhcccccc
Q psy10277 47 DHASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 47 D~asLqRG~qVf~~vCaaCHSl 68 (305)
|.++++..+.--.+.|.+||..
T Consensus 102 d~~~~~~a~~~v~~~CkaCH~~ 123 (129)
T 1s05_A 102 DVDTLKAAMQPIGKACGNCHEN 123 (129)
T ss_dssp SHHHHHHHTTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhHHHHHHHH
Confidence 7788888888888999999974
No 120
>1gqa_A Cytochrome C'; electron transport, heme; HET: HEC; 1.8A {Rhodobacter sphaeroides} SCOP: a.24.3.2
Probab=48.58 E-value=7.2 Score=31.66 Aligned_cols=21 Identities=14% Similarity=0.439 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHhhcccccc
Q psy10277 48 HASIRRGYEVYKNVCAACHSA 68 (305)
Q Consensus 48 ~asLqRG~qVf~~vCaaCHSl 68 (305)
.++++..+.--.+.|.+||..
T Consensus 105 ~~~~~~a~~~v~~sCkaCH~~ 125 (130)
T 1gqa_A 105 QKELAAAVGKVGGTCKSCHDD 125 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHH
Confidence 566788888888999999973
No 121
>4aan_A Cytochrome C551 peroxidase; oxidoreductase, multiheme cytochromes, conformational rearra; HET: HEC; 1.22A {Geobacter sulfurreducens} PDB: 4aam_A* 4aal_A* 4aao_A*
Probab=46.04 E-value=11 Score=35.71 Aligned_cols=24 Identities=17% Similarity=0.434 Sum_probs=20.2
Q ss_pred CCHHHHHHHHHHHH---------Hhhccccccc
Q psy10277 46 FDHASIRRGYEVYK---------NVCAACHSAR 69 (305)
Q Consensus 46 ~D~asLqRG~qVf~---------~vCaaCHSlk 69 (305)
.+.+.++-|.++|- ..|++||...
T Consensus 43 ~t~~kv~LGr~LFfD~~LS~~~~~SCASCH~~~ 75 (341)
T 4aan_A 43 ASPSRVELGRMLFFDPRLSASHLISCNTCHNVG 75 (341)
T ss_dssp CCHHHHHHHHHHHHCGGGSTTSCCCHHHHSBGG
T ss_pred CCHHHHHHHHHHhcCcccCCCcCCCccccCCcc
Confidence 67899999999996 3699999754
No 122
>3u99_A Diheme cytochrome C; cytochrome C fold, electron transfer protein, electron trans diheme protein, bacterium shewanella baltica OS155; HET: HEC; 1.15A {Shewanella baltica}
Probab=44.09 E-value=7.4 Score=33.14 Aligned_cols=13 Identities=38% Similarity=0.907 Sum_probs=11.0
Q ss_pred HHHHHhhcccccc
Q psy10277 56 EVYKNVCAACHSA 68 (305)
Q Consensus 56 qVf~~vCaaCHSl 68 (305)
..|++-|++||-.
T Consensus 13 ~~Y~~eCgsCH~A 25 (148)
T 3u99_A 13 AEYTAECGSCHMA 25 (148)
T ss_dssp HHHHHHHSSSSCC
T ss_pred HHHHHHHHhCCcc
Confidence 3699999999964
No 123
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=43.15 E-value=7.7 Score=36.43 Aligned_cols=34 Identities=24% Similarity=0.436 Sum_probs=9.2
Q ss_pred HHhhcccccccccccccccCCCCCHHHHHHHHHHhc
Q psy10277 59 KNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIM 94 (305)
Q Consensus 59 ~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~~ 94 (305)
.-+|..||.+++ |+.+.+..++.+..+++..++.
T Consensus 34 ~~~C~Rc~~l~h--y~~~~~v~~~~e~f~~~l~~i~ 67 (368)
T 3h2y_A 34 QVICQRCFRLKH--YNEIQDVSLTDDDFLRILNGIG 67 (368)
T ss_dssp ------------------------CHHHHHHHHHHH
T ss_pred CcEEhhhhhhhc--cCccccCCCCHHHHHHHHHHHh
Confidence 568999999988 8888888888888888777663
No 124
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=39.95 E-value=13 Score=23.42 Aligned_cols=19 Identities=11% Similarity=0.333 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHhhcccCC
Q psy10277 274 TILTAALFYLKRYKFSSLK 292 (305)
Q Consensus 274 ~il~~l~y~lkr~~W~~i~ 292 (305)
+.|.++.++++|..|+.+.
T Consensus 12 i~Flil~~~l~kf~~~Pi~ 30 (34)
T 1b9u_A 12 IAFVLFVLFCMKYVWPPLM 30 (34)
T ss_dssp HHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566677889999998763
No 125
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=35.76 E-value=10 Score=35.50 Aligned_cols=33 Identities=15% Similarity=0.393 Sum_probs=7.4
Q ss_pred HHhhcccccccccccccccCCCCCHHHHHHHHHHh
Q psy10277 59 KNVCAACHSARFICYRNLVGVSHTEAEAKREAEEI 93 (305)
Q Consensus 59 ~~vCaaCHSlky~~y~~l~~~g~t~~evk~~a~~~ 93 (305)
.-+|..||.+++ |+.+.+..++++..+++..++
T Consensus 36 ~~~C~RC~~l~h--y~~~~~v~~~~e~f~~~L~~~ 68 (369)
T 3ec1_A 36 EVICQRCFRLKH--YNEVQDVPLDDDDFLSMLHRI 68 (369)
T ss_dssp -------------------------CHHHHHHHHH
T ss_pred CEEchhHHHhhc--cccccCCcCCHHHHHHHHHHh
Confidence 358999999988 888888888888887777665
No 126
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=35.68 E-value=4.7 Score=33.86 Aligned_cols=60 Identities=18% Similarity=0.264 Sum_probs=36.7
Q ss_pred ccccccc-------cCCCCCHHHHHHHHHHhcccCCCCcCCCCccCCCCCCCCCCCCCCcHHHHHHHhCCCCCCCch
Q psy10277 70 FICYRNL-------VGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLS 139 (305)
Q Consensus 70 y~~y~~l-------~~~g~t~~evk~~a~~~~v~dgp~~~g~~~~r~~~~~D~~~sp~~n~~aA~~an~Ga~PPDLS 139 (305)
-+-||+= .++.-+-+.=|++|+|..+..+.+|.-.|... +.. .....-++|+|.+||||-
T Consensus 63 ~lnWrtSIVDLmKlLglDsSl~~RkeLA~eL~~~~~~~dSA~mNiw-------LHk---~vm~kLa~NGGkvP~~l~ 129 (130)
T 2gqb_A 63 KLEWRTSIVDLMKALDIDSSLSARKELAKELGYSGDMNDSASMNIW-------LHK---QVMSKLVANGGKLPPEIK 129 (130)
T ss_dssp CCCTTTCHHHHHHHTCCCCSHHHHHHHHHHHTCCCSSCHHHHHHHH-------HHH---HHHHHHGGGSEECCTTCC
T ss_pred CCccHHHHHHHHHHhCCCccHHHHHHHHHHhCCCCCCCccHHHHHH-------HHH---HHHHHHHHhCCCCChhhc
Confidence 4566653 35566888899999999887655544333210 000 012233469999999983
No 127
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=35.48 E-value=21 Score=24.61 Aligned_cols=15 Identities=20% Similarity=0.324 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHh
Q psy10277 272 LMTILTAALFYLKRY 286 (305)
Q Consensus 272 fl~il~~l~y~lkr~ 286 (305)
++++..+..++++|+
T Consensus 23 v~ii~~~~~~~~RRR 37 (44)
T 2l2t_A 23 LVIVGLTFAVYVRRK 37 (44)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhhh
Confidence 334444445555553
No 128
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=32.60 E-value=17 Score=38.43 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=33.1
Q ss_pred hHHhhhccccccccCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-hhcccccc
Q psy10277 12 GALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKN-VCAACHSA 68 (305)
Q Consensus 12 ~~~~~~~~~~~~~a~~~~~~~~~~~w~~~g~~~~~D~asLqRG~qVf~~-vCaaCHSl 68 (305)
+.+.+.+...+.++. ..|+.==+.+|- -.+.++++++|.++|+. .|+.|||+
T Consensus 35 ~vL~~~~~~~y~~~P----PiP~~vv~~~G~-~l~T~~dI~~Gq~~~q~~g~m~~GSi 87 (800)
T 3ayf_A 35 TVLLVGGYWIFKEMA----PRPKEVRSESGE-VLMTKETIIGGQAVFQKYGLMDYGTV 87 (800)
T ss_dssp HHHHHHHHHHHHHSC----CCCSEEECTTCC-EEEEHHHHHHHHHHHHHTTGGGTSEE
T ss_pred HHHHHHHHHHHhhCC----CCCceeECCCCC-EEecHHHHHHhHHHHHHcCCcccCcc
Confidence 445555555555432 112221222342 25899999999999988 59999997
No 129
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=31.78 E-value=26 Score=24.08 Aligned_cols=13 Identities=8% Similarity=0.294 Sum_probs=6.1
Q ss_pred HHHHHHHHHHHHh
Q psy10277 274 TILTAALFYLKRY 286 (305)
Q Consensus 274 ~il~~l~y~lkr~ 286 (305)
++..++.++++|+
T Consensus 26 ii~~~~~~~~RRr 38 (44)
T 2ks1_B 26 VVALGIGLFMRRR 38 (44)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHhhhh
Confidence 3444444555553
No 130
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics, PSI-2, protein structure initiative; NMR {Haemophilus influenzae} SCOP: a.284.1.1
Probab=30.72 E-value=13 Score=28.89 Aligned_cols=21 Identities=38% Similarity=0.502 Sum_probs=14.9
Q ss_pred CCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277 132 GAYPPDLSYITMARHGAEDYVFHLLT 157 (305)
Q Consensus 132 Ga~PPDLSliaraR~~G~dyIYs~L~ 157 (305)
-..|+|||||+.. +-+-++|+
T Consensus 26 H~Ap~DLSLMvLG-----N~vTnlln 46 (80)
T 2juz_A 26 HKAPVDLSLIALG-----NMASNLLT 46 (80)
T ss_dssp HTCCSHHHHHHHH-----HHHHHHHT
T ss_pred cCCCccHHHHHHH-----HHHHHHHh
Confidence 4579999999863 45555555
No 131
>1ci3_M Protein (cytochrome F); electron transfer protein, complex subunit, electron transpo; HET: HEM; 1.90A {Phormidium laminosum} SCOP: b.2.6.1 b.84.2.2 PDB: 1tu2_B*
Probab=29.81 E-value=15 Score=33.74 Aligned_cols=10 Identities=60% Similarity=1.029 Sum_probs=8.7
Q ss_pred hhcccccccc
Q psy10277 61 VCAACHSARF 70 (305)
Q Consensus 61 vCaaCHSlky 70 (305)
+|++||-.+.
T Consensus 20 VCANCHLa~K 29 (249)
T 1ci3_M 20 VCANCHLAAK 29 (249)
T ss_dssp GGGGTCCSBC
T ss_pred EeeccccccC
Confidence 7999998865
No 132
>1hcz_A Cytochrome F; electron transport, photosynthesis, cytochrome B6F complex, chloroplast transmembrane; HET: HEM; 1.96A {Brassica rapa} SCOP: b.2.6.1 b.84.2.2 PDB: 1tkw_B* 1ctm_A* 2pcf_B*
Probab=29.65 E-value=15 Score=33.76 Aligned_cols=10 Identities=60% Similarity=1.042 Sum_probs=8.7
Q ss_pred hhcccccccc
Q psy10277 61 VCAACHSARF 70 (305)
Q Consensus 61 vCaaCHSlky 70 (305)
+|++||-.+.
T Consensus 20 VCANCHLA~K 29 (252)
T 1hcz_A 20 VCANCHLASK 29 (252)
T ss_dssp GGGGTCCSBC
T ss_pred EeeccccccC
Confidence 7999998765
No 133
>1e2w_A Cytochrome F; electron transport proteins, internal water chain, photosynthetic function impaired; HET: HEC; 1.6A {Chlamydomonas reinhardtii} SCOP: b.2.6.1 b.84.2.2 PDB: 1cfm_A* 1ewh_A* 1e2v_A* 1e2z_A*
Probab=29.62 E-value=15 Score=33.74 Aligned_cols=10 Identities=60% Similarity=1.099 Sum_probs=8.7
Q ss_pred hhcccccccc
Q psy10277 61 VCAACHSARF 70 (305)
Q Consensus 61 vCaaCHSlky 70 (305)
+|++||-.+.
T Consensus 20 VCANCHLA~K 29 (251)
T 1e2w_A 20 VCANCHLAQK 29 (251)
T ss_dssp GGGGTCCSBC
T ss_pred EeeccccccC
Confidence 7999998765
No 134
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer, structural genomics, PSI, structure initiative; NMR {Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Probab=26.35 E-value=13 Score=28.62 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=10.1
Q ss_pred CCCCCCchhHHh
Q psy10277 132 GAYPPDLSYITM 143 (305)
Q Consensus 132 Ga~PPDLSliar 143 (305)
-..|+|||||+.
T Consensus 26 H~Ap~DLSLMvL 37 (76)
T 2jr2_A 26 EEVTPDLALMCL 37 (76)
T ss_dssp HTCCHHHHHHHH
T ss_pred cCCCccHHHHHH
Confidence 457999999986
No 135
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha, northeast structural GEN consortium, NESG, structural genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1 PDB: 2qti_A
Probab=26.31 E-value=13 Score=28.87 Aligned_cols=21 Identities=38% Similarity=0.600 Sum_probs=14.9
Q ss_pred CCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277 132 GAYPPDLSYITMARHGAEDYVFHLLT 157 (305)
Q Consensus 132 Ga~PPDLSliaraR~~G~dyIYs~L~ 157 (305)
-..|+|||||+.. +-+-++|+
T Consensus 26 H~Ap~DLSLMvLG-----N~vTnlln 46 (80)
T 2juw_A 26 HKAPTDLSLMALG-----NCVTHLLE 46 (80)
T ss_dssp TTCCHHHHHHHHH-----HHHHHHHH
T ss_pred cCCCccHHHHHHH-----HHHHHHHh
Confidence 5679999999863 44555555
No 136
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=26.15 E-value=17 Score=30.52 Aligned_cols=11 Identities=36% Similarity=1.072 Sum_probs=9.4
Q ss_pred Hhhcccccccc
Q psy10277 60 NVCAACHSARF 70 (305)
Q Consensus 60 ~vCaaCHSlky 70 (305)
|-|.+||+.+.
T Consensus 56 N~ClsCH~~~~ 66 (130)
T 1ogy_B 56 NRCLECHRRQY 66 (130)
T ss_dssp BGGGGTSCCCC
T ss_pred CcCcccCCccc
Confidence 67999999765
No 137
>1vf5_C Cytochrome F; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.2.6.1 b.84.2.2 f.23.23.1 PDB: 2d2c_C* 2e74_C* 2e75_C* 2e76_C* 2zt9_C*
Probab=26.09 E-value=19 Score=33.66 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHhhcccC
Q psy10277 269 AVGLMTILTAALFYLKRYKFSSL 291 (305)
Q Consensus 269 ~l~fl~il~~l~y~lkr~~W~~i 291 (305)
+..+.++++=++..|||+-+..+
T Consensus 260 ~F~~~v~laQi~LVLKKKQ~EKV 282 (289)
T 1vf5_C 260 AFICLVMLAQLMLILKKKQVEKV 282 (289)
T ss_dssp HHHHHHHHHHHHHHHHTGGGCTT
T ss_pred HHHHHHHHHHHhheeehhhhhhh
Confidence 34555667777888888877665
No 138
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural genomics, PSI-2, protein structure initiative; NMR {Vibrio parahaemolyticus} SCOP: a.284.1.1
Probab=25.50 E-value=14 Score=28.90 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=15.2
Q ss_pred CCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277 132 GAYPPDLSYITMARHGAEDYVFHLLT 157 (305)
Q Consensus 132 Ga~PPDLSliaraR~~G~dyIYs~L~ 157 (305)
-..|+|||||+.. +-+-++|+
T Consensus 26 H~Ap~DLSLMvLG-----NmvTNlln 46 (83)
T 2jpq_A 26 HAASPELTLMIAG-----NIATNVLN 46 (83)
T ss_dssp TTCCHHHHHHHHH-----HHHHHHHH
T ss_pred cCCCccHHHHHHH-----HHHHHHHh
Confidence 5679999999863 45555555
No 139
>2jxm_B Cytochrome F; copper, electron transport, metal-binding, transport; HET: HEC; NMR {Prochlorothrix hollandica} SCOP: i.4.1.1
Probab=24.81 E-value=15 Score=33.68 Aligned_cols=10 Identities=60% Similarity=1.139 Sum_probs=8.7
Q ss_pred hhcccccccc
Q psy10277 61 VCAACHSARF 70 (305)
Q Consensus 61 vCaaCHSlky 70 (305)
+|++||-.+.
T Consensus 20 VCANCHLa~K 29 (249)
T 2jxm_B 20 VCANCHLAKK 29 (249)
T ss_dssp THHHHCCSBC
T ss_pred EeeccccccC
Confidence 7999998865
No 140
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics, PSI-2, protein initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Probab=24.74 E-value=14 Score=28.78 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=15.3
Q ss_pred CCCCCCchhHHhhhcCCchhHHHhhh
Q psy10277 132 GAYPPDLSYITMARHGAEDYVFHLLT 157 (305)
Q Consensus 132 Ga~PPDLSliaraR~~G~dyIYs~L~ 157 (305)
-..|+|||||+.. +-+-++|+
T Consensus 26 H~Ap~DLSLMvLG-----NmvTNlln 46 (83)
T 2jrx_A 26 HKAPTDLSLMVLG-----NMVTNLIN 46 (83)
T ss_dssp HTCCHHHHHHHHH-----HHHHHHHH
T ss_pred cCCCccHHHHHHH-----HHHHHHHh
Confidence 4579999999863 55656665
No 141
>3b42_A GSU0935, methyl-accepting chemotaxis protein, putative; PAS domain, C-type heme containing sensor, unknown function, signaling protein; HET: HEM; 1.90A {Geobacter sulfurreducens}
Probab=21.88 E-value=24 Score=28.34 Aligned_cols=9 Identities=44% Similarity=1.165 Sum_probs=7.4
Q ss_pred Hhhcccccc
Q psy10277 60 NVCAACHSA 68 (305)
Q Consensus 60 ~vCaaCHSl 68 (305)
+.|.+||..
T Consensus 104 ~~Cl~CH~~ 112 (135)
T 3b42_A 104 QRCQSCHDA 112 (135)
T ss_dssp GGGGGTSCT
T ss_pred cChHhhcCC
Confidence 579999954
No 142
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=20.80 E-value=53 Score=22.66 Aligned_cols=17 Identities=12% Similarity=0.045 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy10277 271 GLMTILTAALFYLKRYK 287 (305)
Q Consensus 271 ~fl~il~~l~y~lkr~~ 287 (305)
+++++.+++..++||+.
T Consensus 23 l~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 23 LVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhheehhh
Confidence 55556666666777653
No 143
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=20.48 E-value=66 Score=23.40 Aligned_cols=30 Identities=20% Similarity=0.109 Sum_probs=26.1
Q ss_pred HhhhHHHHHHHHhhhCCCcHHHHHhhceeE
Q psy10277 220 QSQLAKDVSTFLKWCGEPEHDTRKRMAIKC 249 (305)
Q Consensus 220 ~~Q~a~DVvaFL~w~aeP~~~~Rk~~G~~v 249 (305)
..+..+|-..||.=+.-|.++|=+++..-+
T Consensus 8 ~~~f~kd~~rvlk~~~KPd~~Ef~~iak~~ 37 (61)
T 3mp7_B 8 IRHFWKESRRAFLVTKKPNWATYKRAAKIT 37 (61)
T ss_dssp CTTHHHHHTHHHHHSCCCCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 457799999999999999999988887666
Done!