RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10277
(305 letters)
>3cx5_D Cytochrome C1, heme protein, mitochondrial; complex III, electron
transfer complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ
HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: a.3.1.3 f.23.11.1 PDB: 1kyo_D* 2ibz_D*
3cxh_D* 1kb9_D* 1p84_D* 1ezv_D*
Length = 248
Score = 261 bits (668), Expect = 1e-87
Identities = 138/281 (49%), Positives = 178/281 (63%), Gaps = 35/281 (12%)
Query: 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
+ A + LH P WSH+G ++FDHASIRRGY+VY+ VCAACHS + +R LVGVSHT
Sbjct: 1 MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60
Query: 83 EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYIT 142
E + AEE +D P+E+G KRPGKLSD P PYPNE+AARAAN GA PPDLS I
Sbjct: 61 NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120
Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
ARHG DY+F LLTGY D +PPAGV + G +NPYF GG+I MA
Sbjct: 121 KARHGGCDYIFSLLTGYPD---------------EPPAGVALPPGSNYNPYFPGGSIAMA 165
Query: 203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGA 262
+ L+++++EYEDGTPAT SQ+AKDV+TFL WC EPEHD RKR+ +K
Sbjct: 166 RVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAEPEHDERKRLGLK-------------- 211
Query: 263 LLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKPSSK 303
V +++ L ++K++K++ +KTRK + P
Sbjct: 212 ------TVIILSSLYLLSIWVKKFKWAGIKTRKFVFNPPKP 246
>1pp9_D Cytochrome C-1, cytochrome C1, heme protein, mitochondrial;
cytochrome BC1, membrane protein, heme protein, rieske
iron protein, cytochrome B, complex III; HET: BHG HEM
HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: a.3.1.3
f.23.11.1 PDB: 1bgy_D* 1be3_D* 1l0n_D* 1ntk_D* 1ntm_D*
1ntz_D* 1nu1_D* 1l0l_D* 1ppj_D* 1sqb_D* 1sqp_D* 1sqq_D*
1sqv_D* 1sqx_D* 2a06_D* 2fyu_D* 2ybb_D* 1bcc_D* 2bcc_D*
3bcc_D* ...
Length = 241
Score = 249 bits (636), Expect = 7e-83
Identities = 159/274 (58%), Positives = 191/274 (69%), Gaps = 36/274 (13%)
Query: 27 DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEA 86
DLELHPP WSH GLL S DH SIRRG++VYK VC++CHS ++ YR+LVGV +TE EA
Sbjct: 2 DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEA 61
Query: 87 KREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARH 146
K AEE+ V+DGPNE GEMF RPGKLSD FP PYPN EAARAANNGA PPDLSYI ARH
Sbjct: 62 KALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARH 121
Query: 147 GAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALY 206
G E DYVF LLTGY +PP GV +REGLYFNPYF G AIGMA +Y
Sbjct: 122 GGE----------------DYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIY 165
Query: 207 NEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYA 266
NE++E++DGTPAT SQ+AKDV TFL+W EPEHD RKRM +K
Sbjct: 166 NEVLEFDDGTPATMSQVAKDVCTFLRWAAEPEHDHRKRMGLK------------------ 207
Query: 267 LQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
+ +M +L ++ +KR+K+S LK+RK++Y+P
Sbjct: 208 --MLLMMGLLLPLVYAMKRHKWSVLKSRKLAYRP 239
>1zrt_D Cytochrome C1; cytochrome BC1, membrane protein, heme protein,
rieske iron sulfur protein; HET: HEM SMA HEC; 3.50A
{Rhodobacter capsulatus}
Length = 258
Score = 234 bits (599), Expect = 5e-77
Identities = 65/291 (22%), Positives = 112/291 (38%), Gaps = 62/291 (21%)
Query: 31 HPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREA 90
+ P +S G+ +D A +RRG++VY VC+ACH +F+ R L + +
Sbjct: 3 NVPDHAFSFEGIFGKYDQAQLRRGFQVYNEVCSACHGMKFVPIRTLADDGGPQLDPTFVR 62
Query: 91 EEIMVEDGPNEKGEMFKRPGKLSDT--------FPSPYPNEEAARAANNGAYPPDLSYIT 142
E D +K +R K +D ARA +G ++ +
Sbjct: 63 EYAAGLDTIIDKDSGEERDRKETDMFPTRVGDGMGPDLSVMAKARAGFSGPAGSGMNQLF 122
Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYF-------- 194
G +Y+++ + G+ + +P + +G Y+N F
Sbjct: 123 KGMGGP-EYIYNYVIGFEE---------------NPECAPEGIDGYYYNKTFQIGGVPDT 166
Query: 195 ----------LGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKR 244
G M L ++ + YEDGTPAT Q+A+DVS FL W EP+ RK+
Sbjct: 167 CKDAAGVKITHGSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQ 226
Query: 245 MAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRK 295
M + A+ ++ +L+ L+ + ++ K K
Sbjct: 227 MGLV--------------------AMVMLGLLSVMLYLTNKRLWAPYKGHK 257
>2qjy_B Cytochrome C1; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM
TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2;
2.40A {Rhodobacter sphaeroides} PDB: 2fyn_B* 2qjp_B*
2qjk_B*
Length = 269
Score = 233 bits (595), Expect = 3e-76
Identities = 64/282 (22%), Positives = 109/282 (38%), Gaps = 32/282 (11%)
Query: 30 LHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLV---GVSHTEAEA 86
H + +S G +FD ++RG +VY VCAACH +F+ R+L G E +
Sbjct: 4 GHVEDVPFSFEGPFGTFDQHQLQRGLQVYTEVCAACHGMKFVPIRSLSEPGGPELPEDQV 63
Query: 87 KREAEEIMVEDGPNE---KGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITM 143
+ A + V D +G+ + ARA +G +S +
Sbjct: 64 RAYATQFTVTDEETGEDREGKPTDHFPHSALENAPDLSLMAKARAGFHGPMGTGISQLFN 123
Query: 144 ARHGAEDYVFHLLTGYMDPPAGDYVFHLLTG-----YMDPPAGVQIREGLYFNPYFLGGA 198
G +Y++ +LTG+ + P H G + + G
Sbjct: 124 GIGGP-EYIYSVLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVPDTCKDANGVKTTAGSW 182
Query: 199 IGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAG 258
I M L ++++EY DG A+ +A+DVS FL W EP+ RK+
Sbjct: 183 IAMPPPLMDDLVEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFT---------- 232
Query: 259 GAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKISYKP 300
AV +T+L+ L+ + ++ +K +K +
Sbjct: 233 ----------AVMFLTVLSVLLYLTNKRLWAGVKGKKKTNVH 264
>2yiu_B Cytochrome C1, heme protein; oxidoreductase; HET: HEM SMA HEC;
2.70A {Paracoccus denitrificans}
Length = 263
Score = 217 bits (553), Expect = 5e-70
Identities = 76/296 (25%), Positives = 112/296 (37%), Gaps = 53/296 (17%)
Query: 11 AGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARF 70
G A + H + +S G FD ++RG +VY VC+ACH R+
Sbjct: 7 PGTTAPAGAAQEAGDSHAAAHIEDISFSFEGPFGKFDQHQLQRGLQVYTEVCSACHGLRY 66
Query: 71 ICYRNLV---GVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFP--------SP 119
+ R L G E + + A + D E+ RP +D FP
Sbjct: 67 VPLRTLADEGGPQLPEDQVRAYAANFDITDPETEED----RPRVPTDHFPTVSGEGMGPD 122
Query: 120 YPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPP 179
ARA +G Y LS + G +Y+ +LTGY D
Sbjct: 123 LSLMAKARAGFHGPYGTGLSQLFNGIGGP-EYIHAVLTGY-----------------DGE 164
Query: 180 AGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGEPEH 239
+ LY N F G I MA L ++ + YEDGTPAT Q+A DV+ FL W EP+
Sbjct: 165 EKEEAGAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAFLMWTAEPKM 224
Query: 240 DTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRK 295
RK++ +V + +L A L+ + + +K +
Sbjct: 225 MDRKQVGFV--------------------SVIFLIVLAALLYLTNKKLWQPIKHPR 260
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 48.3 bits (114), Expect = 2e-06
Identities = 41/274 (14%), Positives = 75/274 (27%), Gaps = 89/274 (32%)
Query: 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
+ DL P + + S SIR G + N ++ H
Sbjct: 313 CRPQDL----PREVLTTNPRRLSIIAESIRDGLATWDN------------WK------HV 350
Query: 83 EAEAKREAEEIMVED-GPNEKGEMFKRPGKLSDTFP----------------SPYPNEE- 124
+ E + P E +MF +LS FP +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFD---RLS-VFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 125 ----------AARAANNGAYP-PDLSYITMARHGAEDYVFH--LLTGY----------MD 161
+ P + Y+ + +Y H ++ Y +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSI-YLELKVKLENEYALHRSIVDHYNIPKTFDSDDLI 465
Query: 162 PPAGD-YVFHLLTGY----MDPPAGVQIREGLYFNPYFLGGAI----------GMAQALY 206
PP D Y + + G+ ++ P + + ++ + FL I G
Sbjct: 466 PPYLDQYFYSHI-GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTL 524
Query: 207 NEIIEYE----DGTPATQSQLAKDVSTFLKWCGE 236
++ Y+ D P +L + FL E
Sbjct: 525 QQLKFYKPYICDNDP-KYERLVNAILDFLPKIEE 557
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 40.8 bits (95), Expect = 5e-04
Identities = 59/337 (17%), Positives = 93/337 (27%), Gaps = 117/337 (34%)
Query: 15 LYALESSYVQAGDLELHPPHLKWSHSGLL------------------DSFDHASIRRGYE 56
+ L V A L P L+ G +SF
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF---------- 292
Query: 57 VYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTF 116
+ +V A FI R + EA ++ED E E
Sbjct: 293 -FVSVRKAITVLFFIGVR-----CY-EAYPNTSLPPSILED-SLENNE----------GV 334
Query: 117 PSP------YPN---EEAARAANNGAYPPDLSYITMARH-GAEDYVFHLLTGYMDPPAGD 166
PSP ++ N ++ P + ++ GA++ V ++G PP
Sbjct: 335 PSPMLSISNLTQEQVQDYVNKTN--SHLPAGKQVEISLVNGAKNLV---VSG---PPQSL 386
Query: 167 YVFHL-LTGYMDPPAGVQIR-----EGLYFNPYFLGGAIG-------MAQALYNEIIE-- 211
Y +L L P Q R L F+ FL + + A +++I
Sbjct: 387 YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFL--PVASPFHSHLLVPA--SDLINKD 442
Query: 212 -YEDGTPATQSQLAKDV-STFLKWCGEPEHDTRK------RMAIKCMTTLGVL------- 256
++ + V TF G D R + C+ L V
Sbjct: 443 LVKNNVSFNAKDIQIPVYDTF---DGS---DLRVLSGSISERIVDCIIRLPVKWETTTQF 496
Query: 257 ------------AGGAGALLYA-LQAVGLMTILTAAL 280
A G G L + G+ I+ L
Sbjct: 497 KATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAGTL 533
Score = 33.9 bits (77), Expect = 0.066
Identities = 49/293 (16%), Positives = 88/293 (30%), Gaps = 67/293 (22%)
Query: 13 ALLYALESSYVQAGDLELHPPHLKWSHS--GLLDSFDHASIRRGYEVYKNVCAACHSARF 70
L E+ Y++ D+ H+ L + ++ + E+ KN A A+
Sbjct: 86 LCLTEFENCYLEGNDI----------HALAAKLLQENDTTLVKTKELIKNYITARIMAK- 134
Query: 71 ICYRNLVGVSHT---EAEAKREAEEIMVE---DGPNEKGEMFK--RPGKLSDTFPSPYPN 122
R S++ A +++ G + + F+ R L T+
Sbjct: 135 ---RPFDKKSNSALFRA-VGEGNAQLVAIFGGQGNTD--DYFEELR--DLYQTYH-VLVG 185
Query: 123 EEAARAANNGAYPPDLSYITMARHGAEDY------VFHLLTGYMDPPAGDYVFHLLTGYM 176
+ +A LS + AE + L + P DY LL+
Sbjct: 186 DLIKFSAET------LSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDY---LLSI-- 234
Query: 177 DPPAGVQIREGLY-------------FNP----YFLGGAIGMAQALYNEIIEYEDGTPAT 219
P + I G+ F P +L GA G +Q L + E + +
Sbjct: 235 -PISCPLI--GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWES 291
Query: 220 QSQLAKDVSTFLKWCGEPEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGL 272
+ T L + G ++ ++ L G L L
Sbjct: 292 FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL 344
Score = 28.9 bits (64), Expect = 2.5
Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 37/117 (31%)
Query: 48 HASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFK 107
H +G + +N Y ++ T + K + E+I E + F+
Sbjct: 1675 HFGGEKGKRIREN------------YSAMIF--ETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 108 RP-GKLSDT-FPSPYPNEEA----ARAA-----NNGAYPPDLSYITMARH--GAEDY 151
G LS T F P A +AA + G P D T A H G E Y
Sbjct: 1721 SEKGLLSATQFTQP-----ALTLMEKAAFEDLKSKGLIPAD---ATFAGHSLG-E-Y 1767
>1gdv_A Cytochrome C6; RED ALGA, electron transport; HET: HEM; 1.57A
{Porphyra yezoensis} SCOP: a.3.1.1 PDB: 2zbo_A*
Length = 85
Score = 34.1 bits (78), Expect = 0.009
Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 1/68 (1%)
Query: 49 ASIRRGYEVYKNVCAACHSA-RFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFK 107
A + G +V+ CAACH+ + + + N K M
Sbjct: 1 ADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMPA 60
Query: 108 RPGKLSDT 115
G+L D
Sbjct: 61 FGGRLVDE 68
>3dr0_A Cytochrome C6; photosynthesis, cyanobacteria, electron transfer
electron transport, heme, iron, metal-binding,
thylakoid; HET: HEM; 1.23A {Synechococcus SP}
Length = 93
Score = 33.4 bits (76), Expect = 0.017
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 8/75 (10%)
Query: 49 ASIRRGYEVYKNVCAACHSA--------RFICYRNLVGVSHTEAEAKREAEEIMVEDGPN 100
A G +V+ CAACH+ + + L + + EE + N
Sbjct: 1 ADAAAGAQVFAANCAACHAGGNNAVMPTKTLKADALKTYLAGYKDGSKSLEEAVAYQVTN 60
Query: 101 EKGEMFKRPGKLSDT 115
+G M G+LSD
Sbjct: 61 GQGAMPAFGGRLSDA 75
>1kx2_A Mono-heme C-type cytochrome SCYA; HAEM protein, ferrocytochrome,
electron transport, GRAM negative, bacteria; HET: HEC;
NMR {Shewanella putrefaciens} SCOP: a.3.1.1 PDB:
1kx7_A*
Length = 81
Score = 33.1 bits (75), Expect = 0.018
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 49 ASIRRGYEVYKNVCAACHSA 68
A ++ +Y C CHS
Sbjct: 1 ADLQDAEAIYNKACTVCHSM 20
>1f1f_A Cytochrome C6; heme, protein structure, cyanobacteria,
photosynthesis, electron transport; HET: HEM; 2.70A
{Arthrospira maxima} SCOP: a.3.1.1 PDB: 1kib_A*
Length = 89
Score = 33.0 bits (75), Expect = 0.020
Identities = 15/72 (20%), Positives = 23/72 (31%), Gaps = 5/72 (6%)
Query: 49 ASIRRGYEVYKNVCAACHSA---RFICYRNLVGVSHTEA--EAKREAEEIMVEDGPNEKG 103
+ G V+ CAACH + + L + +A + N K
Sbjct: 1 GDVAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFDDDAVAAVAYQVTNGKN 60
Query: 104 EMFKRPGKLSDT 115
M G+LS
Sbjct: 61 AMPGFNGRLSPL 72
>3ph2_B Cytochrome C6; photosynthesis, cytochrome F, photosys thylakoid;
HET: HEM; 1.40A {Phormidium laminosum} PDB: 2v08_A*
1c6s_A*
Length = 86
Score = 32.2 bits (73), Expect = 0.031
Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 9/72 (12%)
Query: 49 ASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREA-----EEIMVEDGPNEKG 103
A + G +V+ CAACH+ NLV T + E + N K
Sbjct: 2 ADLATGAKVFSANCAACHAG----GINLVNAEKTLKKEALEKFGMNSIVAITTVVTNGKA 57
Query: 104 EMFKRPGKLSDT 115
M G+L+D
Sbjct: 58 GMPAFKGRLTDD 69
>1ego_A Glutaredoxin; electron transport; NMR {Escherichia coli} SCOP:
c.47.1.1 PDB: 1egr_A 1grx_A* 1qfn_A
Length = 85
Score = 31.8 bits (73), Expect = 0.053
Identities = 8/63 (12%), Positives = 24/63 (38%), Gaps = 7/63 (11%)
Query: 56 EVY-KNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSD 114
++ ++ C C A+ + + + + + + K ++ ++ GK +
Sbjct: 4 VIFGRSGCPYCVRAKDLA------EKLSNERDDFQYQYVDIRAEGITKEDLQQKAGKPVE 57
Query: 115 TFP 117
T P
Sbjct: 58 TVP 60
>2ce0_A Cytochrome C6; chloroplast, electron transport, heme, iron,
thylakoid, photosynthesis, metal-binding, electron
transfer; HET: HEC; 1.24A {Arabidopsis thaliana} PDB:
2ce1_A* 2dge_A* 2v07_A*
Length = 105
Score = 31.9 bits (72), Expect = 0.062
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 49 ASIRRGYEVYKNVCAACHSA 68
I+RG ++ CAACH
Sbjct: 3 LDIQRGATLFNRACAACHDT 22
>1cyi_A Cytochrome C6, cytochrome C553; photosynthesis, electron transport
protein (cytochrome); HET: HEM; 1.90A {Chlamydomonas
reinhardtii} SCOP: a.3.1.1 PDB: 1cyj_A*
Length = 90
Score = 31.8 bits (72), Expect = 0.064
Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 9/73 (12%)
Query: 49 ASIRRGYEVYKNVCAACHSA------RFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEK 102
A + G +V+ CAACH + + K E+ VE+G K
Sbjct: 1 ADLALGAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENG---K 57
Query: 103 GEMFKRPGKLSDT 115
G M +LS+
Sbjct: 58 GAMPAWADRLSEE 70
>3cp5_A Cytochrome C; electron transfer protein, electron transport; HET:
HEC; 1.24A {Rhodothermus marinus}
Length = 124
Score = 32.4 bits (73), Expect = 0.069
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 44 DSFDHASIRRGYEVYKNVCAACHSA 68
+ D A ++G +++ C ACH
Sbjct: 27 EQIDAALAQQGEQLFNTYCTACHRL 51
>1wve_C 4-cresol dehydrogenase [hydroxylating] cytochrome C subunit;
flavocytochrome, electron-transfer, FAD, heme,
oxidoreductase; HET: FAD HEM; 1.85A {Pseudomonas putida}
SCOP: a.3.1.1 PDB: 1diq_C* 1dii_C*
Length = 80
Score = 31.4 bits (71), Expect = 0.070
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 11/68 (16%)
Query: 49 ASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEM--F 106
+ G +Y VC CH L G EA K +V +G M F
Sbjct: 2 SQWGSGKNLYDKVCGHCHKPEVGVGPVLEGRGLPEAYIKD-----IVRNG---FRAMPAF 53
Query: 107 KRPGKLSD 114
+ D
Sbjct: 54 -PASYVDD 60
>3dmi_A Cytochrome C6; electron transport, transit peptide; HET: HEM;
1.50A {Phaeodactylum tricornutum}
Length = 88
Score = 31.0 bits (70), Expect = 0.10
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 49 ASIRRGYEVYKNVCAACHSA 68
+ G +++ CAACH+
Sbjct: 1 GDVGAGEQIFNANCAACHAG 20
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Length = 689
Score = 33.0 bits (75), Expect = 0.13
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 45 SFDHASIRRGYEVYKNVCAACHSARFI---CYRNLVGVSHTEAEAKREAEEIMVEDGPNE 101
S D ASI G ++Y C+ CH + +L ++ K + ++ G
Sbjct: 589 SNDTASIEAGAKLYDGYCSQCHGIHAVSGGVLPDLRKLT----PEKHQMFLGILFGGRVP 644
Query: 102 KG 103
G
Sbjct: 645 DG 646
>3dp5_A OMCF, cytochrome C family protein; C-type cytochrome, Fe SAD
phasing, dissimilatory metal reduction, electron
transport; HET: HEM; 1.86A {Geobacter sulfurreducens}
Length = 99
Score = 30.7 bits (69), Expect = 0.15
Identities = 6/18 (33%), Positives = 8/18 (44%)
Query: 49 ASIRRGYEVYKNVCAACH 66
G E++ CA CH
Sbjct: 17 VPNSGGGELFATHCAGCH 34
>1c6r_A Cytochrome C6; electron transport protein, reduced state,
photosynthesis; HET: HEM; 1.90A {Scenedesmus obliquus}
SCOP: a.3.1.1 PDB: 1c6o_A* 1a2s_A* 1ced_A* 1ctj_A*
Length = 89
Score = 30.6 bits (69), Expect = 0.16
Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 49 ASIRRGYEVYKNVCAACHSA------RFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEK 102
A + G + ++ CAACH+ R + EA VE+G K
Sbjct: 2 ADLALGKQTFEANCAACHAGGNNSVIPDHTLRKAAMEQFLQGGFNLEAITYQVENG---K 58
Query: 103 GEMFKRPGKLSDT 115
G M G L D
Sbjct: 59 GAMPAWSGTLDDD 71
>1ls9_A Cytochrome C6; omega loop, antiparallel beta-sheet, protoporphyrin
IX containing Fe, heme, HAEM, electron transport; HET:
HEM; 1.30A {Cladophora glomerata} SCOP: a.3.1.1
Length = 91
Score = 30.6 bits (69), Expect = 0.16
Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 47 DHASIRRGYEVYKNVCAACHSA---RFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKG 103
D + G +V+ CAACH + + L + + E + N KG
Sbjct: 2 DAELLADGKKVFAGNCAACHLGGNNSVLADKTLKKDAIEKYLEGGLTLEAIKYQVNNGKG 61
Query: 104 EM--FKRPGKLSDT 115
M + +L +
Sbjct: 62 AMPAWA--DRLDED 73
>3cu4_A Cytochrome C family protein; monoheme cytochrome, electron
transport; HET: HEM; 1.30A {Geobacter sulfurreducens}
Length = 85
Score = 30.3 bits (68), Expect = 0.18
Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 12/74 (16%)
Query: 49 ASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREA-----EEIMVEDGPNEKG 103
S G E++ CA CH N V T A A+REA + N
Sbjct: 3 GSGAGGGELFATHCAGCHPQG----GNTVHPEKTLARARREANGIRTVRDVAAYIRNPGP 58
Query: 104 EM--FKRPGKLSDT 115
M F +
Sbjct: 59 GMPAFG-EAMIPPA 71
>1c75_A Cytochrome C-553; heme, bacillus pasteurii, AB initio, ATOM
resolution, electron transport; HET: HEM; 0.97A
{Sporosarcina pasteurii} SCOP: a.3.1.1 PDB: 1b7v_A*
1k3g_A* 1k3h_A* 1n9c_A*
Length = 71
Score = 29.8 bits (67), Expect = 0.19
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 54 GYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEI--MVEDGPNEKGEM 105
V + C +CH + +A A EEI ++ +G +G M
Sbjct: 3 AEAVVQQKCISCHGGD---LTGASAPAIDKAGANYSEEEILDIILNG---QGGM 50
>1cc5_A Cytochrome C5; electron transport (heme protein); HET: HEM; 2.50A
{Azotobacter vinelandii} SCOP: a.3.1.1
Length = 83
Score = 30.0 bits (67), Expect = 0.24
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 49 ASIRRGYEVYKNVCAACHSA 68
R G +V C ACH
Sbjct: 2 GGARSGDDVVAKYCNACHGT 21
>2zon_G Cytochrome C551; nitrite, electron transfer, denitrification,
oxidoreductase/electron transport complex; HET: HEM;
1.70A {Achromobacter xylosoxidans}
Length = 87
Score = 30.0 bits (67), Expect = 0.25
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 49 ASIRRGYEVYKNVCAACHSA 68
G ++Y++ C CH++
Sbjct: 7 QLDPAGEKLYRSACVVCHAS 26
>1w5c_T Cytochrome C-550; photosynthesis, water oxidation, photosystem,
membrane protein; HET: CL1 CLA PHO HEM HEC BCR; 3.2A
{Thermosynechococcus elongatus} SCOP: i.5.1.1
Length = 163
Score = 30.2 bits (67), Expect = 0.47
Identities = 11/60 (18%), Positives = 20/60 (33%)
Query: 7 LAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACH 66
LA L+ A +L + + G + G +++ CA+CH
Sbjct: 8 LAVALCLCLWQFTMGTALAAELTPEVLTVPLNSEGKTITLTEKQYLEGKRLFQYACASCH 67
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold,
cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A
{Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Length = 677
Score = 31.1 bits (70), Expect = 0.48
Identities = 15/74 (20%), Positives = 23/74 (31%), Gaps = 11/74 (14%)
Query: 4 LGVLAGGAGALLYALESSYVQAGDL--------ELHPPHLKWSHSGLL---DSFDHASIR 52
+ V G G A ++ Q + P +G L +D A +
Sbjct: 535 VSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKARMPEFVAQRTGQLLQGVKYDPAKVE 594
Query: 53 RGYEVYKNVCAACH 66
G +Y C CH
Sbjct: 595 AGTMLYVANCVFCH 608
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer,
oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas
putida} SCOP: a.3.1.6 b.70.1.1
Length = 668
Score = 30.7 bits (69), Expect = 0.72
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 45 SFDHASIRRGYEVYKNVCAACH 66
+ ++ G ++Y C+ CH
Sbjct: 574 TAAPEQVQAGKQLYGQFCSVCH 595
>2gc4_D Cytochrome C-L; electron transfer, methylamine dehydrogenase,
blue copper protein, oxidoreductase, electron
transport; HET: TRQ HEM; 1.90A {Paracoccus
denitrificans} SCOP: a.3.1.1 PDB: 2gc7_D* 2mta_C*
1mg2_D* 1mg3_D*
Length = 147
Score = 29.2 bits (65), Expect = 0.89
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 47 DHASIRRGYEVYKNVCAACH 66
D + E+Y +C+ CH
Sbjct: 42 DPEILPEAEELYAGMCSGCH 61
>2blf_B SORB, sulfite\:cytochrome C oxidoreductase subunit B; sulfite
oxidase, molybdopterin, C-type cytochrome, heme,
electron transport; HET: MSS HEC; 1.8A {Starkeya
novella} PDB: 2bpb_B* 2c9x_B* 2ca3_B* 2ca4_B*
Length = 81
Score = 28.1 bits (62), Expect = 0.93
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 54 GYEVYKNVCAACHSARFI 71
G+E +N CAACHS +I
Sbjct: 21 GFEAAQNNCAACHSVDYI 38
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL
HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Length = 337
Score = 30.1 bits (68), Expect = 0.97
Identities = 8/17 (47%), Positives = 11/17 (64%)
Query: 53 RGYEVYKNVCAACHSAR 69
RG +V++ CAACH
Sbjct: 238 RGQQVFQQNCAACHGVA 254
>2d0w_A Cytochrome CL; electron transfer, electron transport; HET: HEM;
1.98A {Hyphomicrobium denitrificans}
Length = 170
Score = 29.2 bits (65), Expect = 0.99
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 47 DHASIRRGYEVYKNVCAACH 66
+ +G E+Y C+ CH
Sbjct: 44 VAGCLPKGEEIYLESCSGCH 63
>2c8s_A Cytochrome C-L; HAEM, heme, electron transport, metal-binding;
HET: HEM; 1.6A {Methylobacterium extorquens} SCOP:
a.3.1.1
Length = 172
Score = 29.2 bits (65), Expect = 1.0
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 47 DHASIRRGYEVYKNVCAACH 66
D + +R G ++ C+ CH
Sbjct: 50 DKSCLRNGESLFATSCSGCH 69
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer,
electron transport; HET: HEC; NMR {Pseudomonas putida}
Length = 110
Score = 28.5 bits (63), Expect = 1.1
Identities = 5/19 (26%), Positives = 12/19 (63%)
Query: 49 ASIRRGYEVYKNVCAACHS 67
S G ++++ C++CH+
Sbjct: 1 GSFTSGEQIFRTRCSSCHT 19
>3o0r_C Nitric oxide reductase subunit C; oxidoreductase, electron
transport, heme, iron, membrane, CY membrane; HET: HEM
HEC; 2.70A {Pseudomonas aeruginosa}
Length = 146
Score = 28.1 bits (62), Expect = 2.3
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 49 ASIRRGYEVY-KNVCAACHS 67
A++ RG V+ +N C CH+
Sbjct: 47 AAVVRGKLVWEQNNCVGCHT 66
>1fov_A Glutaredoxin 3, GRX3; active site disulfide, CIS Pro 53, electron
transport; NMR {Escherichia coli} SCOP: c.47.1.1 PDB:
3grx_A*
Length = 82
Score = 26.7 bits (60), Expect = 2.7
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 14/63 (22%)
Query: 56 EVY-KNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSD 114
E+Y K C CH A+ + GVS +E+ ++ ++ EM KR G+
Sbjct: 4 EIYTKETCPYCHRAKALLSSK--GVSF---------QELPIDGNAAKREEMIKRSGR--T 50
Query: 115 TFP 117
T P
Sbjct: 51 TVP 53
>1w2l_A Cytochrome oxidase subunit II; cytochrome C domain,
oxidoreductase; HET: HEM; 1.3A {Rhodothermus marinus}
Length = 99
Score = 27.2 bits (60), Expect = 2.7
Identities = 6/23 (26%), Positives = 9/23 (39%), Gaps = 1/23 (4%)
Query: 47 DHASIRRGYEVY-KNVCAACHSA 68
G +Y + C +CHS
Sbjct: 2 TMPLAELGARLYREKACFSCHSI 24
>1ycc_A Cytochrome C; electron transport (cytochrome); HET: M3L HEM;
1.23A {Saccharomyces cerevisiae} SCOP: a.3.1.1 PDB:
1kyo_W* 3cx5_W* 2gb8_B* 2pcc_B* 2b12_B* 2jti_B* 2b11_B*
2b0z_B* 2bcn_B* 1u74_B* 2b10_B* 1yfc_A* 1yic_A* 1nmi_A*
2hv4_A* 2orl_A* 3tyi_A* 1crh_A* 2ycc_A* 1csw_A* ...
Length = 108
Score = 26.8 bits (60), Expect = 3.4
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 49 ASIRRGYEVYKNVCAACHS 67
S ++G ++K C CH+
Sbjct: 6 GSAKKGATLFKTRCLQCHT 24
>2w9k_A Cytochrome C, cytochrome C555; electron transport, intermembrane
space, metal-binding, thioether bond, respiratory
chain, trypanosome; HET: M3L HEC; 1.55A {Crithidia
fasciculata} PDB: 2yk3_A* 4dy9_A*
Length = 114
Score = 27.2 bits (61), Expect = 3.5
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 49 ASIRRGYEVYKNVCAACHS 67
RG +++K A CH+
Sbjct: 12 GDAARGEKLFKGRAAQCHT 30
>1ccr_A Cytochrome C; electron transport(cytochrome); HET: M3L HEM; 1.50A
{Oryza sativa} SCOP: a.3.1.1
Length = 112
Score = 26.8 bits (60), Expect = 4.4
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 49 ASIRRGYEVYKNVCAACHS 67
+ + G +++K CA CH+
Sbjct: 10 GNPKAGEKIFKTKCAQCHT 28
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Length = 495
Score = 27.9 bits (62), Expect = 4.5
Identities = 14/111 (12%), Positives = 29/111 (26%), Gaps = 17/111 (15%)
Query: 120 YPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTG----- 174
+ A NG + +Y+ + + + + D D V + G
Sbjct: 16 FGKTGDAEKVLNGGW----NYLMETFNSYANPGYGAMLRANDAMGSDVVLNSKYGFRTHN 71
Query: 175 -YMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLA 224
+ + Y I N +++ D TQ+
Sbjct: 72 EFSAIYGKGGTNTLSWLLAY---RVINDC----NGVLDNIDAAEGTQADRN 115
>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding
protein; periplasmic binding protein, cellulose,
thermophilic proteins; HET: CBI; 1.50A {Thermotoga
maritima} PDB: 2o7j_A* 3i5o_A*
Length = 592
Score = 27.8 bits (62), Expect = 5.0
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 13/61 (21%)
Query: 190 FNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVS-------TF-----LKWC-GE 236
+N Y G Q +Y +Y+ G A +A+ +W G
Sbjct: 24 WNLYAPQSTWGTDQFMYLPAFQYDLGRDAWIPVIAERYEFVDDKTLRIYIRPEARWSDGV 83
Query: 237 P 237
P
Sbjct: 84 P 84
>1hro_A Cytochrome C2; electron transport, photosynthesis, heme; HET:
HEM; 2.20A {Rhodopila globiformis} SCOP: a.3.1.1
Length = 106
Score = 26.4 bits (59), Expect = 5.3
Identities = 4/19 (21%), Positives = 8/19 (42%)
Query: 49 ASIRRGYEVYKNVCAACHS 67
G ++ +C CH+
Sbjct: 6 GDPVEGKHLFHTICITCHT 24
>1mz4_A Cytochrome C550; PSII associated cytochrome, electron transport;
HET: HEM; 1.80A {Thermosynechococcus elongatus} SCOP:
a.3.1.1 PDB: 1izl_V* 1s5l_V* 2axt_V* 3a0b_V* 3a0h_V*
3arc_V* 3bz1_V* 3bz2_V* 3kzi_V* 3prq_V* 3prr_V*
Length = 137
Score = 27.0 bits (59), Expect = 5.4
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 40 SGLLDSFDHASIRRGYEVYKNVCAACHS 67
G + G +++ CA+CH
Sbjct: 15 EGKTITLTEKQYLEGKRLFQYACASCHV 42
>1f1c_A Cytochrome C549; dimeric cytochrome, electron transport; HET:
HEM; 2.30A {Arthrospira maxima} SCOP: a.3.1.1
Length = 129
Score = 26.7 bits (58), Expect = 5.8
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 40 SGLLDSFDHASIRRGYEVYKNVCAACHS 67
G I++G +V+ CA CH+
Sbjct: 13 QGDTAVLSLKEIKKGQQVFNAACAQCHA 40
>4f53_A SUSD homolog; TPR-like protein, mucin O-glycan binding, structural
genomic center for structural genomics, JCSG; 2.25A
{Bacteroides ovatus}
Length = 520
Score = 27.6 bits (60), Expect = 6.7
Identities = 13/123 (10%), Positives = 29/123 (23%), Gaps = 9/123 (7%)
Query: 112 LSDTFPSPYPNEEAARAANNGAYPPDLSYITMA---RHGAEDYVFHLLTGYMDPPAGDYV 168
+ + + A ++ T + + + + D +
Sbjct: 208 TCYVAGFNVNGKTSQQLAEEAVAAGVMTAATDGAYRKVADHNPWQRFMVLWSDARISADL 267
Query: 169 FHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALYNEIIEYEDGTPATQSQLAKDVS 228
+ Y DP Y++ G G A + G Q S
Sbjct: 268 TCYMNAYNDPRREA------YYDKSTFGTVSGNAYTGEESYVGLRRGILQGQYNSWSQGS 321
Query: 229 TFL 231
+ +
Sbjct: 322 SCM 324
>1c52_A Cytochrome-C552; electron transport protein, MAD,
thermostability; HET: HEM; 1.28A {Thermus thermophilus}
SCOP: a.3.1.1 PDB: 1qyz_A* 1r0q_A* 2fwl_A* 1foc_A*
1dt1_A*
Length = 131
Score = 26.3 bits (58), Expect = 7.0
Identities = 6/16 (37%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 53 RGYEVYKNVCAACHSA 68
G ++Y CA CH
Sbjct: 3 DGAKIYAQ-CAGCHQQ 17
>1fgj_A Hydroxylamine oxidoreductase; nitrification; HET: HEM HEC; 2.80A
{Nitrosomonas europaea} SCOP: a.138.1.3
Length = 546
Score = 27.5 bits (59), Expect = 7.6
Identities = 14/105 (13%), Positives = 29/105 (27%), Gaps = 5/105 (4%)
Query: 39 HSGLLDSFDHASIRRGYEVYKNVCAACHSARFI--CYRNLVGVSHTEAEAKREAEEIMVE 96
G+ ++ + + C CHS RF + + +EA I+
Sbjct: 337 VPGIAENITSDWSEARLDSWVLTCTQCHSERFARSYLDLMDKGTLEGLAKYQEANAIV-- 394
Query: 97 DGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYI 141
E G + + P P + + + +
Sbjct: 395 HKMYEDGTLTGQKTN-RPNPPEPEKPGFGIFTQLFWSKGNNPASL 438
>1fcd_C Flavocytochrome C sulfide dehydrogenase (cytochrome subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: a.3.1.4 a.3.1.4
Length = 174
Score = 26.4 bits (58), Expect = 8.8
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 46 FDHASIRRGYEVYKNVCAACHSAR 69
FD A G +++ C CH
Sbjct: 85 FDTALADTGAKLHDKYCEKCHVEG 108
>2khp_A Glutaredoxin; thioredoxin type domain, ssgcid, electron TRAN
structural genomics, seattle structural genomics center
for infectious disease; NMR {Brucella melitensis}
Length = 92
Score = 25.6 bits (57), Expect = 8.9
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 91 EEIMVEDGPNEKGEMFKRPGKLSDTFP 117
EI P + EM +R G+ +TFP
Sbjct: 34 NEIDASATPELRAEMQERSGR--NTFP 58
>1w79_A D-alanyl-D-alanine carboxypeptidase; penicillin-binding,
peptidoglycan, transpeptidase, antibiotic resistance,
hydrolase; 1.8A {Actinomadura SP} SCOP: e.3.1.3 PDB:
1w8q_A 1w8y_A* 2vgj_A* 2vgk_A* 2xln_A* 2y5o_A* 2xdm_A*
2xk1_A* 2y4a_A* 2y55_A* 2y59_A* 2wke_A* 2y5r_A* 3zvt_A*
3zvw_A*
Length = 489
Score = 27.1 bits (59), Expect = 9.3
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 156 LTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGL 188
L+GY+ P G+ F ++ PA + +++ +
Sbjct: 420 LSGYVPGPEGELAFSIVNNGHSGPAPLAVQDAI 452
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0460 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,937,717
Number of extensions: 313220
Number of successful extensions: 983
Number of sequences better than 10.0: 1
Number of HSP's gapped: 963
Number of HSP's successfully gapped: 65
Length of query: 305
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 212
Effective length of database: 4,105,140
Effective search space: 870289680
Effective search space used: 870289680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.4 bits)