RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10277
(305 letters)
>d1ppjd1 a.3.1.3 (D:1-195) Cytochrome bc1 domain {Cow (Bos taurus)
[TaxId: 9913]}
Length = 195
Score = 231 bits (591), Expect = 3e-77
Identities = 138/210 (65%), Positives = 157/210 (74%), Gaps = 16/210 (7%)
Query: 27 DLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEA 86
DLELHPP WSH GLL S DH SIRRG++VYK VC++CHS ++ YR+LVGV +TE EA
Sbjct: 2 DLELHPPSYPWSHRGLLSSLDHTSIRRGFQVYKQVCSSCHSMDYVAYRHLVGVCYTEDEA 61
Query: 87 KREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYITMARH 146
K AEE+ V+DGPNE GEMF RPGKLSD FP PYPN EAARAANNGA PPDLSYI ARH
Sbjct: 62 KALAEEVEVQDGPNEDGEMFMRPGKLSDYFPKPYPNPEAARAANNGALPPDLSYIVRARH 121
Query: 147 GAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMAQALY 206
G E DYVF LLTGY +PP GV +REGLYFNPYF G AIGMA +Y
Sbjct: 122 GGE----------------DYVFSLLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIY 165
Query: 207 NEIIEYEDGTPATQSQLAKDVSTFLKWCGE 236
NE++E++DGTPAT SQ+AKDV TFL+W E
Sbjct: 166 NEVLEFDDGTPATMSQVAKDVCTFLRWAAE 195
>d3cx5d1 a.3.1.3 (D:62-260) Cytochrome bc1 domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 199
Score = 225 bits (574), Expect = 1e-74
Identities = 121/214 (56%), Positives = 148/214 (69%), Gaps = 15/214 (7%)
Query: 23 VQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHT 82
+ A + LH P WSH+G ++FDHASIRRGY+VY+ VCAACHS + +R LVGVSHT
Sbjct: 1 MTAAEHGLHAPAYAWSHNGPFETFDHASIRRGYQVYREVCAACHSLDRVAWRTLVGVSHT 60
Query: 83 EAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSYIT 142
E + AEE +D P+E+G KRPGKLSD P PYPNE+AARAAN GA PPDLS I
Sbjct: 61 NEEVRNMAEEFEYDDEPDEQGNPKKRPGKLSDYIPGPYPNEQAARAANQGALPPDLSLIV 120
Query: 143 MARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGLYFNPYFLGGAIGMA 202
ARHG DY+F LLTGY D +PPAGV + G +NPYF GG+I MA
Sbjct: 121 KARHGGCDYIFSLLTGYPD---------------EPPAGVALPPGSNYNPYFPGGSIAMA 165
Query: 203 QALYNEIIEYEDGTPATQSQLAKDVSTFLKWCGE 236
+ L+++++EYEDGTPAT SQ+AKDV+TFL WC E
Sbjct: 166 RVLFDDMVEYEDGTPATTSQMAKDVTTFLNWCAE 199
>d3cx5d2 f.23.11.1 (D:261-307) Cytochrome c1 subunit of cytochrome
bc1 complex (Ubiquinol-cytochrome c reductase),
transmembrane anchor {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 47
Score = 61.6 bits (150), Expect = 2e-13
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 20/64 (31%)
Query: 237 PEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKI 296
PEHD RKR+ +K + +++ L ++K++K++ +KTRK
Sbjct: 1 PEHDERKRLGLKTV--------------------IILSSLYLLSIWVKKFKWAGIKTRKF 40
Query: 297 SYKP 300
+ P
Sbjct: 41 VFNP 44
>d1ppjd2 f.23.11.1 (D:196-241) Cytochrome c1 subunit of cytochrome
bc1 complex (Ubiquinol-cytochrome c reductase),
transmembrane anchor {Cow (Bos taurus) [TaxId: 9913]}
Length = 46
Score = 60.1 bits (146), Expect = 6e-13
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 20/64 (31%)
Query: 237 PEHDTRKRMAIKCMTTLGVLAGGAGALLYALQAVGLMTILTAALFYLKRYKFSSLKTRKI 296
PEHD RKRM +K + +M +L ++ +KR+K+S LK+RK+
Sbjct: 1 PEHDHRKRMGLKML--------------------LMMGLLLPLVYAMKRHKWSVLKSRKL 40
Query: 297 SYKP 300
+Y+P
Sbjct: 41 AYRP 44
>gi|226495805|ref|NP_001141284.1|(252-280:326) hypothetical protein
LOC100273373 [Zea mays] gi|149066116|gb|EDM15989.1|
cytochrome c-1 (predicted), isoform CRA_c [Rattus
norvegicus] gi|194703754|gb|ACF85961.1| unknown [Zea
mays] gi|12833077|dbj|BAB22380.1| unnamed protein
product [Mus musculus] gi|13385006|ref|NP_079843.1|
cytochrome c-1 [Mus musculus]
gi|21759079|sp|Q9D0M3.1|CY1_MOUSE RecName:
Full=Cytochrome c1, heme protein, mitochondrial;
AltName: Full=Ubiquinol-cytochrome-c reductase complex
cytochrome c1 subunit; Short=Cytochrome c-1; AltName:
Full=Cytochrome b-c1 complex subunit 4; AltName:
Full=Complex III subunit 4; AltName: Full=Complex III
subunit IV; Flags: Precursor
gi|12847311|dbj|BAB27518.1| unnamed protein product [Mus
musculus] gi|13542841|gb|AAH05620.1| Cytochrome c-1
[Mus musculus] gi|74191403|dbj|BAE30282.1| unnamed
protein product [Mus musculus]
gi|148697605|gb|EDL29552.1| cytochrome c-1, isoform
CRA_c [Mus musculus] gi|119602566|gb|EAW82160.1|
cytochrome c-1 [Homo sapiens]
gi|109087720|ref|XP_001089782.1| PREDICTED: similar to
Cytochrome c1, heme protein, mitochondrial precursor
(Cytochrome c-1) isoform 1 [Macaca mulatta]
gi|74213069|dbj|BAE41677.1| unnamed protein product [Mus
musculus] E=3e-08 s/c=2.10 id=87% cov=103%
Length = 29
Score = 58.5 bits (142), Expect = 2e-12
Identities = 20/29 (68%), Positives = 26/29 (89%)
Query: 208 EIIEYEDGTPATQSQLAKDVSTFLKWCGE 236
E++EY+DGTPAT SQ+AKDV+TFL+W E
Sbjct: 1 EVLEYDDGTPATMSQVAKDVATFLRWASE 29
>d1kb0a1 a.3.1.6 (A:579-675) Quinoprotein alcohol dehydrogenase,
C-terminal domain {Comamonas testosteroni [TaxId: 285]}
Length = 97
Score = 33.7 bits (76), Expect = 0.005
Identities = 16/70 (22%), Positives = 22/70 (31%)
Query: 45 SFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGE 104
+D A + G +Y C CH + + + E V GP
Sbjct: 9 KYDPAKVEAGTMLYVANCVFCHGVPGVDRGGNIPNLGYMDASYIENLPNFVFKGPAMVRG 68
Query: 105 MFKRPGKLSD 114
M GKLS
Sbjct: 69 MPDFTGKLSG 78
>d1ls9a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Green alga (Cladophora glomerata) [TaxId: 162068]}
Length = 91
Score = 32.9 bits (74), Expect = 0.008
Identities = 15/71 (21%), Positives = 25/71 (35%), Gaps = 3/71 (4%)
Query: 47 DHASIRRGYEVYKNVCAACHSA---RFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKG 103
D + G +V+ CAACH + + L + + E + N KG
Sbjct: 2 DAELLADGKKVFAGNCAACHLGGNNSVLADKTLKKDAIEKYLEGGLTLEAIKYQVNNGKG 61
Query: 104 EMFKRPGKLSD 114
M +L +
Sbjct: 62 AMPAWADRLDE 72
>d1gdva_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Red
alga (Porphyra yezoensis) [TaxId: 2788]}
Length = 85
Score = 32.1 bits (72), Expect = 0.014
Identities = 14/67 (20%), Positives = 21/67 (31%), Gaps = 1/67 (1%)
Query: 49 ASIRRGYEVYKNVCAACH-SARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFK 107
A + G +V+ CAACH + + + N K M
Sbjct: 1 ADLDNGEKVFSANCAACHAGGNNAIMPDKTLKKDVLEANSMNTIDAITYQVQNGKNAMPA 60
Query: 108 RPGKLSD 114
G+L D
Sbjct: 61 FGGRLVD 67
>d1cyja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Chlamydomonas reinhardtii [TaxId: 3055]}
Length = 90
Score = 32.1 bits (72), Expect = 0.015
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 49 ASIRRGYEVYKNVCAACHSA---RFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEM 105
A + G +V+ CAACH + + L + + E ++ N KG M
Sbjct: 1 ADLALGAQVFNGNCAACHMGGRNSVMPEKTLDKAALEQYLDGGFKVESIIYQVENGKGAM 60
Query: 106 FKRPGKLSD 114
+LS+
Sbjct: 61 PAWADRLSE 69
>d1pbya1 a.3.1.7 (A:1-85) Quinohemoprotein amine dehydrogenase A
chain, domains 1 and 2 {Paracoccus denitrificans
[TaxId: 266]}
Length = 85
Score = 31.1 bits (70), Expect = 0.031
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 54 GYEVYKNVCAACHSARFICYRNLV 77
G EV +N CAACH +
Sbjct: 3 GEEVLQNACAACHVQHEDGRWERI 26
>d1f1fa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Arthrospira maxima [TaxId: 129910]}
Length = 88
Score = 30.6 bits (68), Expect = 0.046
Identities = 14/69 (20%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 51 IRRGYEVYKNVCAACHSA-----RFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEM 105
+ G V+ CAACH + ++ +A + N K M
Sbjct: 2 VAAGASVFSANCAACHMGGRNVIVANKTLSKSDLAKYLKGFDDDAVAAVAYQVTNGKNAM 61
Query: 106 FKRPGKLSD 114
G+LS
Sbjct: 62 PGFNGRLSP 70
>d1kx7a_ a.3.1.1 (A:) Mono-heme c-type cytochrome ScyA {Shewanella
putrefaciens [TaxId: 24]}
Length = 81
Score = 30.2 bits (67), Expect = 0.067
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 49 ASIRRGYEVYKNVCAACHSA 68
A ++ +Y C CHS
Sbjct: 1 ADLQDAEAIYNKACTVCHSM 20
>d1ctja_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Monoraphidium braunii [TaxId: 34112]}
Length = 89
Score = 30.2 bits (67), Expect = 0.071
Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 49 ASIRRGYEVYKNVCAACHSA---RFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEM 105
A + G V+ CAACH+ I L + + E +V N KG M
Sbjct: 2 ADLALGKAVFDGNCAACHAGGGNNVIPDHTLQKAAIEQFLDGGFNIEAIVYQIENGKGAM 61
Query: 106 FKRPGKLSD 114
G+L +
Sbjct: 62 PAWDGRLDE 70
>d1jmxa1 a.3.1.7 (A:2-85) Quinohemoprotein amine dehydrogenase A
chain, domains 1 and 2 {Pseudomonas putida [TaxId:
303]}
Length = 84
Score = 29.9 bits (67), Expect = 0.077
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 54 GYEVYKNVCAACHSARFICYRNLV 77
G + +N C CH + +
Sbjct: 3 GPSLLQNKCMGCHIPEGNDTYSRI 26
>d1e29a_ a.3.1.1 (A:) Photosystem II associated cytochrome c549
{Synechocystis sp., pcc 6803 [TaxId: 1143]}
Length = 135
Score = 29.9 bits (66), Expect = 0.18
Identities = 5/31 (16%), Positives = 11/31 (35%)
Query: 38 SHSGLLDSFDHASIRRGYEVYKNVCAACHSA 68
+G + G +++ + C CH
Sbjct: 13 DEAGGTTTLTARQFTNGQKIFVDTCTQCHLQ 43
>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide
dehydrogenase, FCSD, cytochrome subunit {Purple
phototrophic bacterium (Chromatium vinosum) [TaxId:
1049]}
Length = 94
Score = 29.1 bits (64), Expect = 0.23
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 45 SFDHASIRRGYEVYKNVCAACHSA 68
SFD A G +++ C CH
Sbjct: 4 SFDTALADTGAKLHDKYCEKCHVE 27
>d1c6sa_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Cyanobacterium (Synechococcus elongatus) [TaxId:
32046]}
Length = 87
Score = 28.4 bits (62), Expect = 0.33
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
Query: 49 ASIRRGYEVYKNVCAACH-SARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFK 107
A + G +V+ CAACH + N + +E+ ++ + K M
Sbjct: 1 ADLANGAKVFSGNCAACHMGGGNVVMANKTLKKEALEQFGMYSEDAIIYQVQHGKNAMPA 60
Query: 108 RPGKLSD 114
G+L+D
Sbjct: 61 FAGRLTD 67
>d1wvec1 a.3.1.1 (C:602-675) p-Cresol methylhydroxylase,
cytochrome c subunit {Pseudomonas putida [TaxId: 303]}
Length = 74
Score = 27.6 bits (60), Expect = 0.47
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 49 ASIRRGYEVYKNVCAACHSA 68
+ G +Y VC CH
Sbjct: 1 SQWGSGKNLYDKVCGHCHKP 20
>d1mz4a_ a.3.1.1 (A:) Cytochrome c550 {Thermosynechococcus
elongatus [TaxId: 146786]}
Length = 131
Score = 28.8 bits (63), Expect = 0.47
Identities = 6/29 (20%), Positives = 11/29 (37%)
Query: 40 SGLLDSFDHASIRRGYEVYKNVCAACHSA 68
G + G +++ CA+CH
Sbjct: 15 EGKTITLTEKQYLEGKRLFQYACASCHVG 43
>d1f1ca_ a.3.1.1 (A:) Photosystem II associated cytochrome c549
{Arthrospira maxima [TaxId: 129910]}
Length = 129
Score = 28.0 bits (61), Expect = 0.71
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 40 SGLLDSFDHASIRRGYEVYKNVCAACHSA 68
G I++G +V+ CA CH+
Sbjct: 13 QGDTAVLSLKEIKKGQQVFNAACAQCHAL 41
>d1c75a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553)
{Bacillus pasteurii [TaxId: 1474]}
Length = 71
Score = 26.9 bits (59), Expect = 0.75
Identities = 4/16 (25%), Positives = 6/16 (37%)
Query: 54 GYEVYKNVCAACHSAR 69
V + C +CH
Sbjct: 3 AEAVVQQKCISCHGGD 18
>d1ycca_ a.3.1.1 (A:) Mitochondrial cytochrome c {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 108
Score = 27.7 bits (61), Expect = 0.79
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 46 FDHASIRRGYEVYKNVCAACHS 67
F S ++G ++K C CH+
Sbjct: 3 FKAGSAKKGATLFKTRCLQCHT 24
>d1qksa1 a.3.1.2 (A:9-135) N-terminal (heme c) domain of cytochrome
cd1-nitrite reductase {Paracoccus denitrificans [TaxId:
266]}
Length = 127
Score = 27.6 bits (60), Expect = 0.93
Identities = 9/66 (13%), Positives = 17/66 (25%)
Query: 49 ASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKR 108
A ++Y CA CH + + + + +
Sbjct: 44 AQYNEANKIYFERCAGCHGVLRKGATGKALTPDLTRDLGFDYLQSFITYASPAGMPNWGT 103
Query: 109 PGKLSD 114
G+LS
Sbjct: 104 SGELSA 109
>d1cc5a_ a.3.1.1 (A:) Cytochrome c5 {Azotobacter vinelandii
[TaxId: 354]}
Length = 83
Score = 26.7 bits (58), Expect = 1.0
Identities = 7/17 (41%), Positives = 8/17 (47%)
Query: 52 RRGYEVYKNVCAACHSA 68
R G +V C ACH
Sbjct: 5 RSGDDVVAKYCNACHGT 21
>d1hroa_ a.3.1.1 (A:) Cytochrome c2 {Rhodopila globiformis [TaxId:
1071]}
Length = 105
Score = 27.0 bits (59), Expect = 1.2
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 53 RGYEVYKNVCAACHS 67
G ++ +C CH+
Sbjct: 9 EGKHLFHTICITCHT 23
>d1ccra_ a.3.1.1 (A:) Mitochondrial cytochrome c {Rice embryos
(Oryza sativa) [TaxId: 4530]}
Length = 111
Score = 27.0 bits (59), Expect = 1.4
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 53 RGYEVYKNVCAACHS 67
G +++K CA CH+
Sbjct: 13 AGEKIFKTKCAQCHT 27
>d1lfma_ a.3.1.1 (A:) Mitochondrial cytochrome c {Bluefin tuna
(Thunnus thynnus) [TaxId: 8237]}
Length = 103
Score = 26.8 bits (58), Expect = 1.5
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 53 RGYEVYKNVCAACHS 67
+G + + CA CH+
Sbjct: 5 KGKKTFVQKCAQCHT 19
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 27.6 bits (61), Expect = 1.8
Identities = 11/72 (15%), Positives = 24/72 (33%), Gaps = 9/72 (12%)
Query: 45 SFDHASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMV-------ED 97
D ++ + A + + V+H + EA + I V +
Sbjct: 162 LMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQV 221
Query: 98 GPNEKGEMFKRP 109
G + E++ +P
Sbjct: 222 GSPD--EVYDKP 231
>d2a13a1 b.60.1.8 (A:14-166) Hypothetical protein At1g79260 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 153
Score = 27.1 bits (60), Expect = 1.9
Identities = 6/39 (15%), Positives = 12/39 (30%)
Query: 135 PPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLT 173
P ++Y H +GY P + ++
Sbjct: 44 KPVIAYTQKTWKLESGAPMHAESGYFRPRPDGSIEVVIA 82
>d1c52a_ a.3.1.1 (A:) Cytochrome c552 {Thermus thermophilus
[TaxId: 274]}
Length = 131
Score = 26.3 bits (57), Expect = 2.8
Identities = 6/16 (37%), Positives = 8/16 (50%), Gaps = 1/16 (6%)
Query: 53 RGYEVYKNVCAACHSA 68
G ++Y CA CH
Sbjct: 3 DGAKIYAQ-CAGCHQQ 17
>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase,
FCSD, cytochrome subunit {Purple phototrophic bacterium
(Chromatium vinosum) [TaxId: 1049]}
Length = 80
Score = 25.2 bits (54), Expect = 3.2
Identities = 9/59 (15%), Positives = 12/59 (20%)
Query: 56 EVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSD 114
E+ N CA CH + G M + S
Sbjct: 5 EMLTNNCAGCHGTHGNSVGPASPSIAQMDPMVFVEVMEGFKSGEIASTIMGRIAKGYST 63
>d2gc4d1 a.3.1.1 (D:1-147) Cytochrome c551 {Paracoccus
denitrificans [TaxId: 266]}
Length = 147
Score = 26.0 bits (56), Expect = 3.7
Identities = 6/22 (27%), Positives = 10/22 (45%)
Query: 47 DHASIRRGYEVYKNVCAACHSA 68
D + E+Y +C+ CH
Sbjct: 42 DPEILPEAEELYAGMCSGCHGH 63
>d2c8sa1 a.3.1.1 (A:24-172) Cytochrome c-L (MoxG)
{Methylobacterium extorquens [TaxId: 408]}
Length = 149
Score = 26.0 bits (56), Expect = 4.4
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 47 DHASIRRGYEVYKNVCAACHSA 68
D + +R G ++ C+ CH
Sbjct: 27 DKSCLRNGESLFATSCSGCHGH 48
>d2fr2a1 b.60.1.8 (A:4-164) Hypothetical protein Rv2717c
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 161
Score = 26.0 bits (57), Expect = 4.5
Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 4/66 (6%)
Query: 110 GKLSDTFPS--PYPNEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDY 167
G+ + +P+ P+ E A+ G P L+Y R A+ H TGY+
Sbjct: 18 GRGAGKYPTIRPFEYLEEVVFAHVG--KPFLTYTQQTRAVADGKPLHSETGYLRVCRPGC 75
Query: 168 VFHLLT 173
V +L
Sbjct: 76 VELVLA 81
>d1kv9a1 a.3.1.6 (A:561-664) Quinoprotein alcohol dehydrogenase,
C-terminal domain {Pseudomonas putida, hk5 [TaxId:
303]}
Length = 104
Score = 25.3 bits (54), Expect = 4.9
Identities = 5/22 (22%), Positives = 10/22 (45%)
Query: 47 DHASIRRGYEVYKNVCAACHSA 68
++ G ++Y C+ CH
Sbjct: 16 APEQVQAGKQLYGQFCSVCHGM 37
>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 471
Score = 26.6 bits (58), Expect = 5.0
Identities = 10/46 (21%), Positives = 12/46 (26%), Gaps = 5/46 (10%)
Query: 31 HPPHLKWSHSGLLDSFDHASIRRGYEVYKN-----VCAACHSARFI 71
LK L A + E VCA CH +
Sbjct: 139 KSAELKSKVPYLDRGLSAAGFKTFAESTHQEKRSLVCAQCHVEYYF 184
>d1w79a1 e.3.1.3 (A:1-467) D-alanyl-D-alanine carboxypeptidase Dac
{Actinomadura sp. [TaxId: 1989]}
Length = 467
Score = 26.0 bits (56), Expect = 7.0
Identities = 8/33 (24%), Positives = 18/33 (54%)
Query: 156 LTGYMDPPAGDYVFHLLTGYMDPPAGVQIREGL 188
L+GY+ P G+ F ++ PA + +++ +
Sbjct: 420 LSGYVPGPEGELAFSIVNNGHSGPAPLAVQDAI 452
>d1nira1 a.3.1.2 (A:6-117) N-terminal (heme c) domain of cytochrome
cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId:
287]}
Length = 112
Score = 25.0 bits (53), Expect = 7.7
Identities = 10/66 (15%), Positives = 20/66 (30%)
Query: 49 ASIRRGYEVYKNVCAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKR 108
+ ++Y CA CH + ++ E ++ G +
Sbjct: 29 SEFNEAKQIYFQRCAGCHGVLRKGATGKPLTPDITQQRGQQYLEALITYGTPLGMPNWGS 88
Query: 109 PGKLSD 114
G+LS
Sbjct: 89 SGELSK 94
>d1t3qb2 d.133.1.1 (B:166-786) Quinoline 2-oxidoreductase large
subunit QorL {Pseudomonas putida [TaxId: 303]}
Length = 621
Score = 25.7 bits (55), Expect = 8.1
Identities = 29/167 (17%), Positives = 45/167 (26%), Gaps = 18/167 (10%)
Query: 62 CAACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYP 121
A R + +E+I++EDG + G + P
Sbjct: 387 IGAGSIGRAASIVRERVKQLAGHLLEAASEDIVIEDG------LVHVAGVPAKGMP---F 437
Query: 122 NEEAARAANNGAYPPDLSYITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMDPPAG 181
E A A P T+ D +L A T
Sbjct: 438 AEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGGH--AAIVEIDASTYATRVTDF 495
Query: 182 VQIRE-GLYFNPYFL-----GGAI-GMAQALYNEIIEYEDGTPATQS 221
+ + G NP + GG + Q L E+I + G T +
Sbjct: 496 FAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDFGQLVTTT 542
>d1fsfa_ c.124.1.1 (A:) Glucosamine 6-phosphate deaminase/isomerase
NagB {Escherichia coli [TaxId: 562]}
Length = 266
Score = 25.5 bits (55), Expect = 9.2
Identities = 15/98 (15%), Positives = 26/98 (26%), Gaps = 1/98 (1%)
Query: 3 TLGVLAGGAGALLYALESSYVQAGDLELHPPHLKWSHSGLLDSFDHASIRRGYEVYKNVC 62
LG+ GG Y +AG + + +H +
Sbjct: 36 VLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFD 95
Query: 63 AACHSARFICYRNLVGVSHTEAEAKREAEEIMVEDGPN 100
A I N +AE ++ E+I +
Sbjct: 96 HVDIPAENINLLN-GNAPDIDAECRQYEEKIRSYGKIH 132
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 386
Score = 25.3 bits (54), Expect = 10.0
Identities = 23/157 (14%), Positives = 37/157 (23%), Gaps = 8/157 (5%)
Query: 26 GDLELHP--PH-LKWSHSGLLDS--FDHASIRRGYEVYKNVCAACHSARFICYRNLVGVS 80
GD HP ++ S L + RG + + HS R + L G +
Sbjct: 22 GDNSRHPEHAGRIQSIWSRLQERGLRSQCECLRGRKASLEELQSVHSERHV---LLYGTN 78
Query: 81 HTEAEAKREAEEIMVEDGPNEKGEMFKRPGKLSDTFPSPYPNEEAARAANNGAYPPDLSY 140
+ + G +DT + + AAR A
Sbjct: 79 PLSRLKLDNGKLAGLLAQRMFVMLPCGGVGVDTDTIWNELHSSNAARWAAGSVTDLAFKV 138
Query: 141 ITMARHGAEDYVFHLLTGYMDPPAGDYVFHLLTGYMD 177
+ V A + F
Sbjct: 139 ASRELKNGFAVVRPPGHHADHSTAMGFCFFNSVAIAC 175
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.411
Gapped
Lambda K H
0.267 0.0704 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,173,791
Number of extensions: 56834
Number of successful extensions: 203
Number of sequences better than 10.0: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 61
Length of query: 305
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 220
Effective length of database: 1,240,546
Effective search space: 272920120
Effective search space used: 272920120
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.2 bits)