BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10278
(110 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 58.5 bits (140), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 39/77 (50%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
KP+ CP CG + R L H R HT EKPY CP C D L +H + H K Y+
Sbjct: 20 KPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYK 79
Query: 82 CTFCSYSCTERFRLKDH 98
C C S ++R L+ H
Sbjct: 80 CPECGKSFSQRANLRAH 96
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
L +H R H KP++CP CG + K L H R HT EKPY CP C LR
Sbjct: 37 LAEHQR-THTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRA 95
Query: 70 HVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
H + H K Y C C S ++ L+ H
Sbjct: 96 HQRTHTGEKPYACPECGKSFSQLAHLRAH 124
Score = 55.1 bits (131), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
L+ H R H KP+ CP CG + + A L+ H R HT EKPY CP C + L
Sbjct: 93 LRAHQR-THTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHT 151
Query: 70 HVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
H + H K Y+C C S + R L H
Sbjct: 152 HQRTHTGEKPYKCPECGKSFSRRDALNVH 180
Score = 48.5 bits (114), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 4 YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
++ + L+ H R H KP++CP CG + R+ L H R HT EKPY CP C
Sbjct: 115 FSQLAHLRAHQR-THTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSR 173
Query: 64 HNVLRKHVQRHMPVK 78
+ L H + H K
Sbjct: 174 RDALNVHQRTHTGKK 188
Score = 33.5 bits (75), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Query: 49 EKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
EKPYACP C F DH L +H + H K Y+C C S +++ L H
Sbjct: 19 EKPYACPECGKSFSRSDH--LAEHQRTHTGEKPYKCPECGKSFSDKKDLTRH 68
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
KP++CP CG + + + LQ H R HT EKPY CP C + L+KH + H K Y+
Sbjct: 3 KPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYK 62
Query: 82 CTFCSYSCTERFRLKDHTLAKH 103
C C S F DH L++H
Sbjct: 63 CPECGKS----FSRSDH-LSRH 79
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 4 YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC--EFKT 61
++ L+KH R H KP++CP CG + + + LQ H R HT EKPY CP C F
Sbjct: 14 FSQSSNLQKHQR-THTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSR 72
Query: 62 GDHNVLRKHVQRHM 75
DH L +H + H
Sbjct: 73 SDH--LSRHQRTHQ 84
Score = 33.9 bits (76), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 49 EKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
EKPY CP C + L+KH + H K Y+C C S ++ L+ H
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKH 51
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 23 PFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC 82
P +C VCG RK L+ H+R HT KPY C TC++ D + L KH++ H + ++C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 83 TFCSYSCTERFRLKDH 98
C Y+ +L H
Sbjct: 68 QICPYASRNSSQLTVH 83
Score = 46.2 bits (108), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
LK H+R H +KP++C C + ++L H+R H+ E+P+ C C + + + + L
Sbjct: 24 LKTHMR-CHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTV 82
Query: 70 HVQRH 74
H++ H
Sbjct: 83 HLRSH 87
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
Query: 5 ADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTRE 49
AD L KH+R +H +PF+C +C + + + L +H+R HT +
Sbjct: 47 ADSSSLNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
Length = 90
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 4 YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
++D L +HIR +H KPFQC +C R L H+R HT EKP+AC C K
Sbjct: 16 FSDSSNLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 64 HNVLRKHVQRHM 75
+ ++H + H+
Sbjct: 75 SDERKRHTKIHL 86
Score = 39.3 bits (90), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 6/68 (8%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPV 77
+P+ CPV C + L H+R HT +KP+ C C F DH L H++ H
Sbjct: 3 RPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIRTHTGE 60
Query: 78 KKYQCTFC 85
K + C C
Sbjct: 61 KPFACDIC 68
Score = 34.3 bits (77), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 49 EKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFC 85
E+PYACP +C+ + D + L +H++ H K +QC C
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRIC 40
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 49.7 bits (117), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
L HIR +H KPFQC +C ++A+L H+R HT EKP+AC C K + +
Sbjct: 22 LDTHIR-IHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTR 80
Query: 70 HVQRHM 75
H + H+
Sbjct: 81 HTKIHL 86
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKK 79
+P+ CPV C +K L H+R HT +KP+ C C L H++ H K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKP 62
Query: 80 YQCTFCS 86
+ C C
Sbjct: 63 FACDICG 69
Score = 32.0 bits (71), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 49 EKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
E+PYACP +C+ + L H++ H K +QC C + +++ L H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAH 53
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 43/82 (52%), Gaps = 4/82 (4%)
Query: 22 KPFQC--PVCGFTTGRKATLQLHVRQHTREKPYACP--TCEFKTGDHNVLRKHVQRHMPV 77
+PF C P C + + LQ+H R+HT EKPY C CE + + L++H +RH V
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGV 64
Query: 78 KKYQCTFCSYSCTERFRLKDHT 99
K +QC C + LK HT
Sbjct: 65 KPFQCKTCQRKFSRSDHLKTHT 86
Score = 43.9 bits (102), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 49/103 (47%), Gaps = 5/103 (4%)
Query: 4 YADIKCLKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCEFKT 61
Y + L+ H R+ H KP+QC C R L+ H R+HT KP+ C TC+ K
Sbjct: 18 YFKLSHLQMHSRK-HTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF 76
Query: 62 GDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHN 104
+ L+ H + H K + C + SC ++F D + HN
Sbjct: 77 SRSDHLKTHTRTHTGEKPFSCRW--PSCQKKFARSDELVRHHN 117
Score = 43.5 bits (101), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVL 67
LK+H R H +KPFQC C R L+ H R HT EKP++C P+C+ K + L
Sbjct: 54 LKRHQRR-HTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112
Query: 68 RKHVQRH 74
+H H
Sbjct: 113 VRHHNMH 119
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
Length = 90
Score = 49.3 bits (116), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 4 YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGD 63
++ L +HIR +H KPFQC +C R L H+R HT EKP+AC C K
Sbjct: 16 FSQSGSLTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Query: 64 HNVLRKHVQRHM 75
+ ++H + H+
Sbjct: 75 SDERKRHTKIHL 86
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPV 77
+P+ CPV C + +L H+R HT +KP+ C C F DH L H++ H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIRTHTGE 60
Query: 78 KKYQCTFCSYSCTERFRLKDHT 99
K + C C K HT
Sbjct: 61 KPFACDICGRKFARSDERKRHT 82
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 49 EKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFC 85
E+PYACP +C+ + L +H++ H K +QC C
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRIC 40
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac
Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt
Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc
Site)
Length = 90
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
L +HIR +H KPFQC +C R L H+R HT EKP+AC C K + ++
Sbjct: 22 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 70 HVQRHM 75
H + H+
Sbjct: 81 HTKIHL 86
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPV 77
+P+ CPV C R A L H+R HT +KP+ C C F DH L H++ H
Sbjct: 3 RPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIRTHTGE 60
Query: 78 KKYQCTFCS 86
K + C C
Sbjct: 61 KPFACDICG 69
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 49 EKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFC 85
E+PYACP +C+ + L +H++ H K +QC C
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRIC 40
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
L +HIR +H KPFQC +C R L H+R HT EKP+AC C K + ++
Sbjct: 22 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 70 HVQRHM 75
H + H+
Sbjct: 81 HTKIHL 86
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPV 77
+P+ CPV C R L H+R HT +KP+ C C F DH L H++ H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIRTHTGE 60
Query: 78 KKYQCTFCS 86
K + C C
Sbjct: 61 KPFACDICG 69
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 49 EKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFC 85
E+PYACP +C+ + + L +H++ H K +QC C
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC 40
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 48.9 bits (115), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
L +HIR +H KPFQC +C R L H+R HT EKP+AC C K + ++
Sbjct: 22 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 70 HVQRHM 75
H + H+
Sbjct: 81 HTKIHL 86
Score = 42.4 bits (98), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 36/82 (43%), Gaps = 6/82 (7%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPV 77
+P+ CPV C R A L H+R HT +KP+ C C F DH L H++ H
Sbjct: 3 RPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIRTHTGE 60
Query: 78 KKYQCTFCSYSCTERFRLKDHT 99
K + C C K HT
Sbjct: 61 KPFACDICGRKFARSDERKRHT 82
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 49 EKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFC 85
E+PYACP +C+ + L +H++ H K +QC C
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRIC 40
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed
To Dna
Length = 87
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
L +HIR +H KPFQC +C R L H+R HT EKP+AC C K + ++
Sbjct: 21 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 79
Query: 70 HVQRHM 75
H + H+
Sbjct: 80 HTKIHL 85
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPV 77
+P+ CPV C R L H+R HT +KP+ C C F DH L H++ H
Sbjct: 2 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIRTHTGE 59
Query: 78 KKYQCTFCS 86
K + C C
Sbjct: 60 KPFACDICG 68
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 49 EKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFC 85
E+PYACP +C+ + + L +H++ H K +QC C
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC 39
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 1 MNFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTRE 49
M ++ L HIR H KPF C +CG R + H + H R+
Sbjct: 40 MRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQ 87
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 48.9 bits (115), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
L +HIR +H KPFQC +C R L H+R HT EKP+AC C K + ++
Sbjct: 22 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 70 HVQRHM 75
H + H+
Sbjct: 81 HTKIHL 86
Score = 40.0 bits (92), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPV 77
+P+ CPV C R L H+R HT +KP+ C C F DH L H++ H
Sbjct: 3 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIRTHTGE 60
Query: 78 KKYQCTFCS 86
K + C C
Sbjct: 61 KPFACDICG 69
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 49 EKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFC 85
E+PYACP +C+ + + L +H++ H K +QC C
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC 40
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 1 MNFYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTR 48
M ++ L HIR H KPF C +CG R + H + H R
Sbjct: 41 MRNFSRSDHLTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLR 87
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 45.4 bits (106), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPV 77
+KPFQC +C R L H+R HT EKP+AC C +F D + +Q +P+
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQHILPI 59
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(CLONE #2)
Length = 90
Score = 45.1 bits (105), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
L HIR +H KPFQC +C + L H+R HT EKP+AC C K + +
Sbjct: 22 LDTHIR-IHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDR 80
Query: 70 HVQRHM 75
H + H+
Sbjct: 81 HTKIHL 86
Score = 44.7 bits (104), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKK 79
+P+ CPV C +K L H+R HT +KP+ C C H L +H++ H K
Sbjct: 3 RPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKP 62
Query: 80 YQCTFCS 86
+ C C
Sbjct: 63 FACDICG 69
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 49 EKPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
E+PYACP +C+ + L H++ H K +QC C + ++ L H
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQH 53
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 25 QCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH 74
+C CG L +H+R HT EKPY C CE+ LR H++RH
Sbjct: 6 ECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345
In Zinc Finger Protein 278
Length = 95
Score = 42.0 bits (97), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 7/75 (9%)
Query: 3 FYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQH--TREKPYACPTC--E 58
+ D+ L +H + H KP+ CPVCG RK + HVR H + KPY C +C
Sbjct: 16 IFRDVYHLNRH-KLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKG 74
Query: 59 FKTGDHNVLRKHVQR 73
F DH L H+++
Sbjct: 75 FSRPDH--LNGHIKQ 87
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 2/86 (2%)
Query: 26 CPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPV--KKYQCT 83
C +CG L H H+ EKPY+CP C + + + HV+ H K Y C
Sbjct: 10 CEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQ 69
Query: 84 FCSYSCTERFRLKDHTLAKHNPGTDG 109
C + L H H+ + G
Sbjct: 70 SCGKGFSRPDHLNGHIKQVHSGPSSG 95
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 42.0 bits (97), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 27 PVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHMPVKKYQCTF 84
P C + + L+ H+R HT EKPY C C+++ + L +H ++H K +QC
Sbjct: 21 PGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGV 80
Query: 85 CSYSCTERFRLKDHTLAKH 103
C+ S F DH LA H
Sbjct: 81 CNRS----FSRSDH-LALH 94
Score = 38.1 bits (87), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 10 LKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHN 65
LK H+R H KP++C C + R L H R+HT KP+ C C F DH
Sbjct: 33 LKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Query: 66 VLRKHVQRHM 75
L H++RH
Sbjct: 92 AL--HMKRHQ 99
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 41.6 bits (96), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
Query: 10 LKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHN 65
L HIR VH KPF CP CG R L++H R HT EKP+ C C+ + + +
Sbjct: 78 LVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136
Query: 66 VLRKHVQRHMPVK 78
+KH+ H K
Sbjct: 137 DRKKHMHVHTSDK 149
Score = 33.5 bits (75), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 25 QCPVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHMPVKKYQC 82
+CP G + K L H+R HT EKP+ C P C L+ H + H K ++C
Sbjct: 64 ECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKC 123
Query: 83 TFCSYSCTERF 93
F C RF
Sbjct: 124 EF--EGCDRRF 132
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 49/109 (44%), Gaps = 7/109 (6%)
Query: 8 KCLKKHIREVHKR----LKPFQCPVCGFTTGRKATLQLHVRQHT---REKPYACPTCEFK 60
K L K+ +VH R KPF+CP CG RK L H ++ E+ + C C+
Sbjct: 16 KFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQET 75
Query: 61 TGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHNPGTDG 109
LR H+ H Y+C+ CS ++ L+ H + H+ + G
Sbjct: 76 FRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSGPSSG 124
Score = 34.7 bits (78), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
Query: 25 QCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTF 84
+CP C K L++H R+HT EKP+ CP C L +H R+ + Q
Sbjct: 9 ECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFT 68
Query: 85 CSYSCTERFR 94
CS C E FR
Sbjct: 69 CSV-CQETFR 77
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 4 YADIKCLKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACP--TCEF 59
+ + LK+H + VH KPFQC CG L+ HVR HT ++PY CP C
Sbjct: 44 FVESSKLKRH-QLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNK 102
Query: 60 KTGDHNVLRKHVQRHMPVKKYQ 81
K L+ H+ H K Q
Sbjct: 103 KFAQSTNLKSHILTHAKAKNNQ 124
Score = 32.0 bits (71), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 3 FYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFK 60
+ D ++KH+ R+ C CG + L+ H HT EKP+ C C +
Sbjct: 16 MFRDNSAMRKHLHTHGPRVH--VCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKR 73
Query: 61 TGDHNVLRKHVQRHMPVKKYQCTF--CSYSCTERFRLKDHTL 100
LR HV+ H + Y C F C+ + LK H L
Sbjct: 74 FSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHIL 115
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
F C +CG + R +TL H+ H+ +PY C C + + ++KH H K ++C
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 84 FCSYSCTERFRLKDHT 99
C + ++ L H+
Sbjct: 62 VCGKAFSQSSNLITHS 77
Score = 33.5 bits (75), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH 74
+H +P+ C CG +K+ ++ H HT EKP+ C C + L H ++H
Sbjct: 23 IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHT 47
+KKH +H KP +C VCG + + L H R+HT
Sbjct: 45 MKKHTF-IHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 89
Score = 40.4 bits (93), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 10 LKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCE--FKTGDHN 65
LK H+R H KP+ C CG+ R L H R+HT +P+ C C+ F DH
Sbjct: 23 LKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 66 VLRKHVQRHM 75
L H++RH
Sbjct: 82 AL--HMKRHF 89
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 29 CGFTTGRKATLQLHVRQHTREKPYACPT--CEFKTGDHNVLRKHVQRHMPVKKYQCTFCS 86
CG T + + L+ H+R HT EKPY C C +K + L +H ++H + +QC
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ--- 69
Query: 87 YSCTERFRLKDHTLAKH 103
C F DH LA H
Sbjct: 70 -KCDRAFSRSDH-LALH 84
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4
Bound To Its Target Dna
Length = 90
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 10 LKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCE--FKTGDHN 65
LK H+R H KP+ C CG+ R L H R+HT +P+ C C+ F DH
Sbjct: 24 LKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 82
Query: 66 VLRKHVQRHM 75
L H++RH
Sbjct: 83 AL--HMKRHF 90
Score = 38.5 bits (88), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 38/77 (49%), Gaps = 7/77 (9%)
Query: 29 CGFTTGRKATLQLHVRQHTREKPYACPT--CEFKTGDHNVLRKHVQRHMPVKKYQCTFCS 86
CG T + + L+ H+R HT EKPY C C +K + L +H ++H + +QC
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQ--- 70
Query: 87 YSCTERFRLKDHTLAKH 103
C F DH LA H
Sbjct: 71 -KCDRAFSRSDH-LALH 85
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 38.9 bits (89), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKK 79
K F C CG + L +H R HT E+PY C C F+ DH LR H H K
Sbjct: 16 KEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH--LRDHRYIHSKEKP 73
Query: 80 YQCTFC 85
++C C
Sbjct: 74 FKCQEC 79
Score = 28.9 bits (63), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM 75
H +P+ C +C R+ L+ H H++EKP+ C C L H HM
Sbjct: 39 THTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHM 97
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQR 73
F C VC R+ L+ H R HT EKPY C C ++L +H Q+
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 28/51 (54%)
Query: 52 YACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAK 102
Y C C + ++L+KH++ H V+ Y CT+C++S + L H +K
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Score = 35.4 bits (80), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKK 79
+ C CG + + L+ H+R HT +PY C C F L KH++ KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 29.6 bits (65), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
LKKHIR H ++P+ C C F+ K L H++ K
Sbjct: 17 LKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 36.6 bits (83), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 15 REVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
+ VH KP++C +CG R A L+ H R H+ EKP
Sbjct: 37 KTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 24/53 (45%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH 74
KP++C C + K L H HT EKPY C C + L+ H + H
Sbjct: 16 KPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 19/51 (37%)
Query: 49 EKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHT 99
+KPY C C+ L H H K Y+C C LK HT
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHT 65
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain
Of Human Zinc Finger Protein 24
Length = 72
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH 74
KP+ C CG R + L H R HT EKPY C C ++ L H + H
Sbjct: 13 KPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIH 65
Score = 30.0 bits (66), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 49 EKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
EKPY C C ++L +H + H K Y+C C + ++ L +H
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINH 61
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound
To Dna
Length = 73
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 17 VHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQ 72
V +++P+ CPV C R L H+R HT +KP+ C C F DH L H++
Sbjct: 13 VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIR 70
Query: 73 RH 74
H
Sbjct: 71 TH 72
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHT 47
L +HIR +H KPFQC +C R L H+R HT
Sbjct: 37 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 28.9 bits (63), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 50 KPYACP--TCEFKTGDHNVLRKHVQRHMPVKKYQCTFC 85
+PYACP +C+ + + L +H++ H K +QC C
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRIC 55
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 35.4 bits (80), Expect = 0.008, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KP++CP C + + KA L +H+R+HT EK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2
Domains Of Human Zinc Finger Protein 297b
Length = 110
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)
Query: 29 CGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYS 88
CG + K+ H+ H +PY C C K + L H++ H +K Y+C C+
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICA-- 72
Query: 89 CTERFRLKD 97
+RF +D
Sbjct: 73 --KRFMWRD 79
Score = 34.3 bits (77), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 27/56 (48%)
Query: 16 EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHV 71
+H L+P+ C VCG K L H++ HT KPY C C + + +HV
Sbjct: 30 SMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 45
Score = 32.7 bits (73), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 18/35 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT 56
KP+ CPVCG RK + HVR H + P+
Sbjct: 9 KPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 47 TREKPYACPTCEFKTGDHNVLRKHVQRH 74
+ EKPY+CP C + + + HV+ H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domain Of Zinc Finger Protein 435
Length = 77
Score = 32.7 bits (73), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPV 77
++C CG + + L H R HT EKPY C C G + R H+ H V
Sbjct: 19 YKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC----GKAFIQRSHLIGHHRV 68
Score = 25.4 bits (54), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
L KH R H KP++C CG +++ L H R HT P +
Sbjct: 34 LSKH-RRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.7 bits (73), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
+PF+C CG GR++ L H+R H+REK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREK 39
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM 75
+PF C CG T + L H R H +P +CP C D + + +H++ H
Sbjct: 3 RPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVHQ 56
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 32.7 bits (73), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP++C +CG + +K+ L +H + HT EKP
Sbjct: 11 KPYECSICGKSFTKKSQLHVHQQIHTGEKPSG 42
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2
Domains From Human Krueppel-Like Factor 10
Length = 72
Score = 32.3 bits (72), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 27 PVCGFTTGRKATLQLHVRQHTREKPYACP--TCEFKTGDHNVLRKHVQRH 74
P CG T + + L+ H R HT EKP++C CE + + L +H + H
Sbjct: 23 PGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP+ C CG T +K+ L H R HT EKP
Sbjct: 11 KPYGCNECGKTFSQKSILSAHQRTHTGEKPSG 42
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 32.0 bits (71), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 29 CGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCS 86
CG + LQ H+ +HT EKP+ C CE + L +H H K + C S
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD--S 68
Query: 87 YSCTERFRLK 96
C RF K
Sbjct: 69 DGCDLRFTTK 78
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain
Of Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 32.0 bits (71), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 36 KATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQR 73
KA L++H R H ++P+ C C F T + L KH+++
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKK 59
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKP 51
++C CG RK+TL +H R HT EKP
Sbjct: 13 YECSECGKAFARKSTLIMHQRIHTGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 31.6 bits (70), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KP QC +CG + ++L HVRQHT EK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCE--FKTGDHNVLRKHVQRHMPVKKYQ 81
+ C VC + +L+ H H+ EK Y C CE F ++ KH H ++YQ
Sbjct: 23 YICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRT--KHEIHHTGERRYQ 80
Query: 82 CTFCSYSCTERFRLKDHTLAKHNPGTDG 109
C C S + H + H+ G
Sbjct: 81 CLACGKSFINYQFMSSHIKSVHSQDPSG 108
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From
Human Zinc Finger Protein 224
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KPF+C CG R++ L +H + HT EKP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSG 42
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 31.6 bits (70), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
K F+C CG RK+TL +H + HT EKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSG 42
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 31.2 bits (69), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
+KP+ C CG K+ L +H+R HT EKP
Sbjct: 8 VKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 18/30 (60%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP++C CG +KA L H R HT EKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP+ C CG K+ L +H+R H+ EKP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 78
Score = 30.8 bits (68), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEF 59
QC +CGFT +KA+L H R+H CEF
Sbjct: 8 LQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEF 43
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 30.4 bits (67), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQH 46
+KPFQCP C ++ R L LH ++H
Sbjct: 5 IKPFQCPDCDWSFSRSDHLALHRKRH 30
Score = 26.9 bits (58), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 47 TREKPYACPTCEFKTGDHNVLRKHVQRHMPV 77
T KP+ CP C++ + L H +RHM V
Sbjct: 3 TGIKPFQCPDCDWSFSRSDHLALHRKRHMLV 33
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger
Domain Bound To The 5s Ribosomal Rna Gene Internal
Control Region
Length = 190
Score = 30.4 bits (67), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 29 CGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCS 86
CG + LQ H+ +HT EKP+ C CE + L +H H K + C S
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCD--S 77
Query: 87 YSCTERFRLK 96
C RF K
Sbjct: 78 DGCDLRFTTK 87
>pdb|2GHF|A Chain A, Solution Structure Of The Complete Zinc-Finger Region Of
Human Zinc-Fingers And Homeoboxes 1 (Zhx1)
Length = 102
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 5/65 (7%)
Query: 49 EKPYACPTCEFKTGDHNVLRKHVQRHMP----VKKYQCTFCSYSCTERFRLKDHTLAKHN 104
E Y C C F+T D N+ HV P Y C C++ L +H L K++
Sbjct: 16 EGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNL-KYH 74
Query: 105 PGTDG 109
PG +
Sbjct: 75 PGEEN 79
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 30.0 bits (66), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP++C CG +K +L +H+R HT P +
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP+QC CG + ++ +L +H R HT P +
Sbjct: 9 KPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP++C CG + +K+ L +H R HT E P
Sbjct: 11 KPYECSDCGKSFIKKSQLHVHQRIHTGENPSG 42
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP++C VCG + +L +H R H+ +KP
Sbjct: 11 KPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KPF+C CG + + L H R HT EKP
Sbjct: 11 KPFECAECGKSFSISSQLATHQRIHTGEKPSG 42
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 29.6 bits (65), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 16/30 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP+ C CG G A L H R HT EKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 29.6 bits (65), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Query: 44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
R HT EKPYAC C+ +L H +R+ F C + F ++ T+A+H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN-TMARH 66
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KPFQC CG +L H+R H R P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSG 42
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 29.3 bits (64), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KPFQC CG + + L H R HT EKP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSG 42
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 29.3 bits (64), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 35/81 (43%), Gaps = 7/81 (8%)
Query: 18 HKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQR 73
H KP +C C + R L+ H+R HT EKPY C C + + KH R
Sbjct: 62 HTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR 121
Query: 74 -HMPVKKYQCTFCSYSCTERF 93
H K Y C CT+R+
Sbjct: 122 THSNEKPYVCKL--PGCTKRY 140
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 30/66 (45%), Gaps = 11/66 (16%)
Query: 19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHMP 76
+ L+PF+ + L +H+R+HT EKP+ C C L+ H++ H
Sbjct: 44 RELRPFKA---------QYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 77 VKKYQC 82
K Y C
Sbjct: 95 EKPYMC 100
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KPF+C CG + ++ L H R HT EKP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSG 42
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KPF+C C K+ L +H R HT EKP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSG 42
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 29.3 bits (64), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 44 RQHTREKPYACPTCEFKTGDHNVLRKHV-QRHMP-VKKYQCTFCSYSCTERFRLKDHTLA 101
R H+ EKPY C C + ++ H+ Q+H V K+ C C + L H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 102 KHN 104
+H+
Sbjct: 68 QHS 70
Score = 25.8 bits (55), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQ-HTRE-KPYACPTCEFKTGDHNVLRKHVQR 73
H KP++C +C + T+++H+ Q HT + CP C+ + L H+++
Sbjct: 9 THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 29.3 bits (64), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KP++C CG G K+ L +H R HT E
Sbjct: 9 KPYECTDCGKAFGLKSQLIIHQRTHTGES 37
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 29.3 bits (64), Expect = 0.66, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 26 CPVCGFTTGRKATLQLHVRQHTREKPY-ACPTCE 58
CP CGF+ G +L R + P+ ACP C+
Sbjct: 270 CPYCGFSIG-----ELEPRLFSFNSPFGACPDCD 298
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KPF+C +CG + ++ L H HT EKP
Sbjct: 11 KPFKCDICGKSFCGRSRLNRHSMVHTAEKPSG 42
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP++C VC +KA L H + HT EKP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 28.9 bits (63), Expect = 0.70, Method: Composition-based stats.
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 26 CPVCGFTTGRKATLQLHVRQHTREKPY-ACPTCE 58
CP CGF+ G +L R + P+ ACP C+
Sbjct: 270 CPYCGFSIG-----ELEPRLFSFNSPFGACPDCD 298
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP+QC CG + + L H R HT EKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.5 bits (62), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KP++C CG RK+ L +H + HT E+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP+QC CG + L H HTREKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|2WBT|A Chain A, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
pdb|2WBT|B Chain B, The Structure Of A Double C2h2 Zinc Finger Protein From A
Hyperthermophilic Archaeal Virus In The Absence Of Dna
Length = 129
Score = 28.5 bits (62), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Query: 19 KRLKPFQCPVCGFTTGRKATLQLHVR--QHTREKPYACPTC--EFKTGD 63
K + F CP+C +L+ H+R +HT+ CP C EF + D
Sbjct: 70 KAISQFVCPLCLMPFSSSVSLKQHIRYTEHTK----VCPVCKKEFTSTD 114
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
++C VCG + + LQ H R HT EKP
Sbjct: 13 YKCDVCGKEFSQSSHLQTHQRVHTGEKPSG 42
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP++C CG K L +H + HT E+P
Sbjct: 11 KPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 16/32 (50%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP+ C CG + LQ H R HT EKP
Sbjct: 11 KPYNCEECGKAFIHDSQLQEHQRIHTGEKPSG 42
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KPF+C CG + + L H R HT EKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSG 42
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
+P++C CG K++L H R HT EKP
Sbjct: 11 RPYECIECGKAFKTKSSLICHRRSHTGEKPSG 42
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KPF+C CG + L H+R HT EKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSG 42
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
+ P++C C + K L +H R HTREKP
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSG 42
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KP++C CG R+ L +H R H EK
Sbjct: 11 KPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQH 46
+KPFQCP C + R L LH ++H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 4/37 (10%)
Query: 43 VRQHTREKPYACPTCE--FKTGDHNVLRKHVQRHMPV 77
R T KP+ CP C+ F DH L H +RHM V
Sbjct: 3 TRGSTGIKPFQCPDCDRSFSRSDHLAL--HRKRHMLV 37
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 15/29 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KPFQC C R L+ H R HT EK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
+P+ C CG GR + L H+++H REK
Sbjct: 11 RPYGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 49 EKPYACPTCEFKTGDHNVLRKHVQRHM 75
E+PY C C G H+ L +H++RH
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHF 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTRE 49
KP+ C VCG A L H+R HT+E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQ-HTREKPYAC 54
KP+ C CG R L H++Q HT E+P+ C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP++C VC A+L H R H+ EKP
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 50 KPYACPTCEFKTGDHNVLRKHVQRHMPVK 78
KP+ C CE+ T + L+ H+ RH K
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP++C VC + ++L +H R HT EKP
Sbjct: 11 KPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KP++C CG R+ L H R HT EK
Sbjct: 11 KPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 27.3 bits (59), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP++C CG + + L H R HT EKP
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQRIHTGEKPSG 42
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 18/32 (56%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP+ C CG + +K+ L H R HT EKP
Sbjct: 11 KPYICNECGKSFIQKSHLNRHRRIHTGEKPSG 42
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KP+ C CG G K+ L +H R HT E
Sbjct: 9 KPYVCNECGKAFGLKSQLIIHERIHTGES 37
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 14/32 (43%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KPF C CG L H R HT EKP
Sbjct: 11 KPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSG 42
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKP 51
++C CG +K+TL +H R H EKP
Sbjct: 13 YECSECGKAFIQKSTLSMHQRIHRGEKP 40
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP++C CG + + L H R HT EKP
Sbjct: 11 KPYKCNECGKVFTQNSHLTNHWRIHTGEKPSG 42
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 15/29 (51%)
Query: 23 PFQCPVCGFTTGRKATLQLHVRQHTREKP 51
P++C CG RK L H R H EKP
Sbjct: 12 PYECHECGKAFSRKYQLISHQRTHAGEKP 40
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP++C CG +++L +H H+ EKP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKP 40
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 26.6 bits (57), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 22 KPFQC--PVCGFTTGRKATLQLHVRQHTREKPYA 53
KPF C P CG+ R L H R H+ KP
Sbjct: 11 KPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSG 44
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 26.6 bits (57), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
+KP+ C C T K+ L +H R HT KP
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 23 PFQCPVCGFTTGRKATLQLHVR-QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPV---- 77
P P CG + L H + QH +K ++CP E G +KH++ HM +
Sbjct: 9 PCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCP--EPACGKSFNFKKHLKEHMKLHSDT 66
Query: 78 KKYQCTF 84
+ Y C F
Sbjct: 67 RDYICEF 73
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 4 YADIKCLKKHIREVHKRLKPFQCP--VCGFTTGRKATLQLHVRQHTREKPYAC 54
+++ + L H + H K F CP CG + K L+ H++ H+ + Y C
Sbjct: 19 FSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYIC 71
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 26.6 bits (57), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KPF+C CG + K L H R HT EK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
>pdb|1KLR|A Chain A, Nmr Structure Of The Zfy-6t[y10f] Zinc Finger
Length = 30
Score = 26.6 bits (57), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 50 KPYACPTCEFKTGDHNVLRKHVQ 72
K Y C CEF++ D + L+ H++
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVR-QHTREK 50
K +QC C F + + L+ H++ +H++EK
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.6 bits (57), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 20 RLKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
R KP++C CG R + L +H R H+ E
Sbjct: 9 REKPYECSECGKAFIRNSQLIVHQRTHSGES 39
>pdb|1FFK|W Chain W, Crystal Structure Of The Large Ribosomal Subunit From
Haloarcula Marismortui At 2.4 Angstrom Resolution
Length = 73
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 10 LKKHIREVH-KRLKPFQCPVCGFTTGRKATLQLHVRQH 46
++ +R+V K K ++CPVCGF ++A+ + V H
Sbjct: 13 IRVRVRDVEIKHKKKYKCPVCGFPKLKRASTSIWVCGH 50
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
+KP+ C CG K+ L +H R HT E
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTHTGES 39
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 26.2 bits (56), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 16/29 (55%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KP+ C CG K+ L +H R HT EK
Sbjct: 9 KPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 26.2 bits (56), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP++C CG + L H R HT EKP
Sbjct: 11 KPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 26.2 bits (56), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 23 PFQCPVCGFTTGRKATLQLHVRQHTREK 50
F C VC R+ L+ H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 47 TREKPYACPTCEFKTGDHNVLRKHVQRH 74
+ EKPY+C C+ D+N L +H + H
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMH 33
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 16/32 (50%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP++C CG + L H R HT EKP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSG 42
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
+P+ C VCG ++ L H + HT EKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSG 42
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
PF C CG K L +H + HT E+P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSG 42
>pdb|3CFF|A Chain A, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFF|B Chain B, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFF|G Chain G, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFF|H Chain H, Photoswitchable Red Fluorescent Protein Psrfp, On-State
pdb|3CFH|A Chain A, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
pdb|3CFH|B Chain B, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
pdb|3CFH|G Chain G, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
pdb|3CFH|H Chain H, Photoswitchable Red Fluorescent Protein Psrfp, Off-State
Length = 167
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVK 78
+ L +CP GR +LH +++ A EF DH + K VQ+ +
Sbjct: 93 QSLMALKCP-----GGRHLNCRLHTTYRSKKPASALKMPEFHFEDHRIEVKEVQKGKHYE 147
Query: 79 KYQCTFCSYSCTERFRLKDH 98
+Y+ Y +L H
Sbjct: 148 QYEAAVARYXDAAPSKLGHH 167
>pdb|2KVH|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 27
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 49 EKPYACPTCEFKTGDHNVLRKHVQRH 74
EKP++C C ++ D + + KH++ H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>pdb|3CFA|A Chain A, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|B Chain B, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|G Chain G, Anemonia Sulcata Red Fluorescent Protein Asrfp
pdb|3CFA|H Chain H, Anemonia Sulcata Red Fluorescent Protein Asrfp
Length = 167
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVK 78
+ L +CP GR +LH +++ A EF DH + K VQ+ +
Sbjct: 93 QSLMALKCP-----GGRHLNCRLHTTYRSKKPASALKMPEFHFEDHRIEVKEVQKGKHYE 147
Query: 79 KYQCTFCSYSCTERFRLKDH 98
+Y+ Y +L H
Sbjct: 148 QYEAAVARYXDAAPSKLGHH 167
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KP++C CG ++ L H + HT EKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP++C CG G ++ H R HT ++P
Sbjct: 11 KPYKCMECGKAFGDNSSCTQHQRLHTGQRPSG 42
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 25.8 bits (55), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP+ C +CG TL+ H+R HT P +
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
>pdb|5ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 78 KKYQCTFCSYSCTERFRLKDHTLAKHN 104
K YQC +C Y + LK H KH+
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIKTKHS 27
Score = 25.4 bits (54), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 50 KPYACPTCEFKTGDHNVLRKHVQ 72
K Y C CE+++ D + L+ H++
Sbjct: 1 KTYQCQYCEYRSADSSNLKTHIK 23
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 25.4 bits (54), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 23 PFQCPVCGFTTGRKATLQLHVRQHTREK 50
F C VC R+ L+ H R HT EK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 19/29 (65%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KP++C CG + K+ L++H + HT E+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KPF+C C + +++ L H HT EKP
Sbjct: 11 KPFRCDTCDKSFRQRSALNSHRMIHTGEKPSG 42
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
K F+C C T + ++L +H R HT EKP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSG 42
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
KPF C C K+ L +H + H EKP
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 25.0 bits (53), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 16/32 (50%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
K ++C CG R + L H + HT EKP
Sbjct: 11 KRYKCNECGKVFSRNSQLSQHQKIHTGEKPSG 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.138 0.466
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,539,228
Number of Sequences: 62578
Number of extensions: 121061
Number of successful extensions: 850
Number of sequences better than 100.0: 174
Number of HSP's better than 100.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 467
Number of HSP's gapped (non-prelim): 350
length of query: 110
length of database: 14,973,337
effective HSP length: 74
effective length of query: 36
effective length of database: 10,342,565
effective search space: 372332340
effective search space used: 372332340
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)