RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10278
(110 letters)
>gnl|CDD|177300 PHA00732, PHA00732, hypothetical protein.
Length = 79
Score = 31.3 bits (71), Expect = 0.024
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQ-HTREKPYACPTCEFK 60
F+CP+CGFTT L+ H R+ HT K CP C
Sbjct: 2 FKCPICGFTTVTLFALKQHARRNHTLTK---CPVCNKS 36
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 28.9 bits (65), Expect = 0.076
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 39 LQLHVRQHTREKPYACPTCEFKT 61
L+ H+R HT EKPY CP C
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSF 24
Score = 28.5 bits (64), Expect = 0.10
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 67 LRKHVQRHMPVKKYQCTFCSYSCT 90
LR+H++ H K Y+C C S +
Sbjct: 2 LRRHMRTHTGEKPYKCPVCGKSFS 25
Score = 24.7 bits (54), Expect = 2.8
Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGR 35
L++H+R H KP++CPVCG +
Sbjct: 2 LRRHMR-THTGEKPYKCPVCGKSFSS 26
>gnl|CDD|227698 COG5411, COG5411, Phosphatidylinositol 5-phosphate phosphatase
[Signal transduction mechanisms].
Length = 460
Score = 30.5 bits (69), Expect = 0.14
Identities = 13/50 (26%), Positives = 16/50 (32%), Gaps = 6/50 (12%)
Query: 55 PTCEFKTGDHNVLRKHVQRH------MPVKKYQCTFCSYSCTERFRLKDH 98
PT +F G R + K Q T SYS + DH
Sbjct: 268 PTYKFDYGTDEYDTSDKGRIPSWTDRILYKSEQLTPHSYSSIPHLMISDH 317
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 26.9 bits (59), Expect = 0.68
Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQH-TREKPYACPTCEFKTGDH 64
++CP+CG ++ ++ H+R+H T K C +TG++
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKRISLRTGEY 47
>gnl|CDD|223915 COG0846, SIR2, NAD-dependent protein deacetylases, SIR2 family
[Transcription].
Length = 250
Score = 28.4 bits (64), Expect = 0.74
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 9/60 (15%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHV 71
K++ E+H LK +C CG + P CP C VLR V
Sbjct: 111 KNVIELHGSLKRVRCSKCGNQYYD---EDVIKFIEDGLIPR-CPKCGGP-----VLRPDV 161
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 25.9 bits (57), Expect = 0.80
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQH 46
++CP CG K+ L+ H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 23.6 bits (51), Expect = 6.4
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 52 YACPTCEFKTGDHNVLRKHVQRH 74
Y CP C + LR+H++ H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated
Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like
families. RERG (Ras-related and Estrogen- Regulated
Growth inhibitor) and Ras-like 11 are members of a novel
subfamily of Ras that were identified based on their
behavior in breast and prostate tumors, respectively.
RERG expression was decreased or lost in a significant
fraction of primary human breast tumors that lack
estrogen receptor and are correlated with poor clinical
prognosis. Elevated RERG expression correlated with
favorable patient outcome in a breast tumor subtype that
is positive for estrogen receptor expression. In
contrast to most Ras proteins, RERG overexpression
inhibited the growth of breast tumor cells in vitro and
in vivo. RasL11 was found to be ubiquitously expressed
in human tissue, but down-regulated in prostate tumors.
Both RERG and RasL11 lack the C-terminal CaaX
prenylation motif, where a = an aliphatic amino acid and
X = any amino acid, and are localized primarily in the
cytoplasm. Both are believed to have tumor suppressor
activity.
Length = 166
Score = 27.2 bits (61), Expect = 1.2
Identities = 17/46 (36%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 4 YADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTRE 49
+ + L + IRE+ KR PV G KA L LH RQ + E
Sbjct: 88 FDVVSQLLQLIREIKKRDGEI--PV--ILVGNKADL-LHSRQVSTE 128
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 27.5 bits (62), Expect = 1.4
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPY-ACPTCE 58
F CPVCGF+ +L R + P+ ACPTC+
Sbjct: 246 FACPVCGFSIP-----ELEPRLFSFNSPFGACPTCD 276
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 27.6 bits (61), Expect = 1.6
Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 2 NFYADIKCLKKHIREVHKRLKPFQ----CPVCGFTTGRKATLQLHVRQHTREK 50
+ I+ L++++ E+ + ++ CPVCG T G + + H+ H EK
Sbjct: 427 SLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKS--NHIINHYNEK 477
>gnl|CDD|224508 COG1592, COG1592, Rubrerythrin [Energy production and conversion].
Length = 166
Score = 26.5 bits (59), Expect = 2.5
Identities = 12/32 (37%), Positives = 13/32 (40%), Gaps = 13/32 (40%)
Query: 26 CPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
CPVCG+T H E P CP C
Sbjct: 137 CPVCGYT-------------HEGEAPEVCPIC 155
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 26.4 bits (58), Expect = 2.6
Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 19 KRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHV 71
K + P+ CP+C +L+ H+R K CP C + + + HV
Sbjct: 69 KAVSPYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHV 119
Score = 25.2 bits (55), Expect = 6.7
Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 2/54 (3%)
Query: 51 PYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKHN 104
PY CP C L++H++ K C C DH KHN
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSKV--CPVCGKEFRNTDSTLDHVCKKHN 124
>gnl|CDD|237803 PRK14724, PRK14724, DNA topoisomerase III; Provisional.
Length = 987
Score = 26.8 bits (59), Expect = 2.9
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 26 CPVCG---FTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQR 73
CP CG F G + V T +P P+C FK+G +L++ ++R
Sbjct: 758 CPKCGAPVFEHGSNYVCEKSVP--TLAQP--TPSCTFKSG-QVILQQPIER 803
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 26.6 bits (58), Expect = 3.1
Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 21/77 (27%)
Query: 15 REVHKRLKPFQCPVCGFTTGRKATLQL-------HVRQHTRE--------------KPYA 53
K KP++CPV G K L H Q E KPY
Sbjct: 341 MLKVKDGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYR 400
Query: 54 CPTCEFKTGDHNVLRKH 70
C C+ + + N L+ H
Sbjct: 401 CEVCDKRYKNLNGLKYH 417
>gnl|CDD|222450 pfam13909, zf-H2C2_5, C2H2-type zinc-finger domain.
Length = 24
Score = 24.1 bits (53), Expect = 3.4
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 80 YQCTFCSYSCTERFRLKDHTLAKHN 104
Y+C+ C YS T + +L+ H H
Sbjct: 1 YKCSHCPYSSTPK-KLERHLKLHHG 24
>gnl|CDD|221890 pfam13005, HTH_Tnp_IS66, putative Helix-turn-helix domain of
transposase IS66. This is a putative helix-turn-helix
region of the N-terminus of the insertion element IS66
transposase.
Length = 59
Score = 24.9 bits (55), Expect = 3.4
Identities = 10/19 (52%), Positives = 11/19 (57%), Gaps = 1/19 (5%)
Query: 40 QLHVRQHTREKPYACPTCE 58
Q V +H R K YAC CE
Sbjct: 32 QFRVIEHVRPK-YACRCCE 49
>gnl|CDD|149904 pfam08984, DUF1858, Domain of unknown function (DUF1858). This
domain has no known function. It is found in various
hypothetical bacterial proteins.
Length = 59
Score = 24.8 bits (55), Expect = 3.6
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQH 46
V KP P T GR ATL+ +
Sbjct: 22 VELGFKPLANPAMRNTVGRVATLEQAAKMK 51
>gnl|CDD|238698 cd01407, SIR2-fam, SIR2 family of proteins includes silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation, where the
acetyl group from the lysine epsilon-amino group is
transferred to the ADP-ribose moiety of NAD+, producing
nicotinamide and the novel metabolite
O-acetyl-ADP-ribose. Sir2 proteins, also known as
sirtuins, are found in all eukaryotes and many archaea
and prokaryotes and have been shown to regulate gene
silencing, DNA repair, metabolic enzymes, and life span.
The most-studied function, gene silencing, involves the
inactivation of chromosome domains containing key
regulatory genes by packaging them into a specialized
chromatin structure that is inaccessible to DNA-binding
proteins. The oligomerization state of Sir2 appears to
be organism-dependent, sometimes occurring as a monomer
and sometimes as a multimer.
Length = 218
Score = 25.6 bits (57), Expect = 5.1
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 4/46 (8%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
+ E+H L +C CG R RE+ CP C
Sbjct: 98 PKVIELHGSLFRVRCTKCGKEYPRDEL----QADIDREEVPRCPKC 139
>gnl|CDD|115907 pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding
domain. This putative domain is found at the
C-terminus of a large number of transposase proteins.
This domain contains four conserved cysteines
suggestive of a zinc binding domain. Given the need for
transposases to bind DNA as well as the large number of
DNA-binding zinc fingers we hypothesise this domain is
DNA-binding.
Length = 69
Score = 24.9 bits (55), Expect = 5.3
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 2/24 (8%)
Query: 9 CLKKHIREVHKRLKPFQCPVCGFT 32
C K+ + R F+CP CGF
Sbjct: 34 CGHKNKESLSGRT--FKCPNCGFV 55
>gnl|CDD|132318 TIGR03275, methan_mark_8, putative methanogenesis marker protein 8.
Members of this protein family, to date, are found in a
completed prokaryotic genome if and only if the species
is one of the archaeal methanogens. The exact function
is unknown, but likely is linked to methanogenesis or a
process closely connected to it.
Length = 259
Score = 25.5 bits (56), Expect = 6.7
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 6/47 (12%)
Query: 4 YADI--KCLKKHIREVHKRLKPFQC----PVCGFTTGRKATLQLHVR 44
YADI C K+IRE+ K Q PV T K L +
Sbjct: 211 YADIVTSCASKNIREIAKPRALLQVGSAVPVYALTDKGKELLLERAK 257
>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA,
subunit ADA2 [Chromatin structure and dynamics].
Length = 432
Score = 25.4 bits (55), Expect = 7.8
Identities = 6/22 (27%), Positives = 8/22 (36%)
Query: 75 MPVKKYQCTFCSYSCTERFRLK 96
M K C C T+ +K
Sbjct: 1 MGGVKIHCDVCFLDMTDLTFIK 22
>gnl|CDD|226300 COG3777, COG3777, Uncharacterized conserved protein [Function
unknown].
Length = 273
Score = 25.2 bits (55), Expect = 8.7
Identities = 6/26 (23%), Positives = 7/26 (26%)
Query: 45 QHTREKPYACPTCEFKTGDHNVLRKH 70
Q+ EK F T H
Sbjct: 104 QYIEEKHGRSGELTFVTVPHVYSSPG 129
>gnl|CDD|238704 cd01413, SIR2_Af2, SIR2_Af2: Archaeal and prokaryotic group which
includes Archaeoglobus fulgidus Sir2-Af2, Sulfolobus
solfataricus ssSir2, and several bacterial homologs; and
are members of the SIR2 family of proteins, silent
information regulator 2 (Sir2) enzymes which catalyze
NAD+-dependent protein/histone deacetylation. Sir2
proteins have been shown to regulate gene silencing, DNA
repair, metabolic enzymes, and life span. The Sir2
homolog from the archaea Sulfolobus solftaricus
deacetylates the non-specific DNA protein Alba to
mediate transcription repression.
Length = 222
Score = 25.0 bits (55), Expect = 9.5
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
K++ E+H L+ C C G K L+ E P CP C
Sbjct: 102 KNVIELHGTLQTAYCVNC----GSKYDLEEVKYAKKHEVPR-CPKC 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.327 0.138 0.466
Gapped
Lambda K H
0.267 0.0655 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,341,980
Number of extensions: 411246
Number of successful extensions: 732
Number of sequences better than 10.0: 1
Number of HSP's gapped: 722
Number of HSP's successfully gapped: 73
Length of query: 110
Length of database: 10,937,602
Length adjustment: 74
Effective length of query: 36
Effective length of database: 7,655,406
Effective search space: 275594616
Effective search space used: 275594616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (24.3 bits)