RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10278
(110 letters)
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 51.0 bits (123), Expect = 3e-10
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
P +C C ++ KA L++H R H ++P+ C C F T + L KH+++
Sbjct: 8 HPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67
Query: 82 CT 83
+
Sbjct: 68 SS 69
Score = 41.7 bits (99), Expect = 1e-06
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 44 RQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
+ P C C + LR H + H + ++C +CS+ + L H + K
Sbjct: 2 SSGSSGHPEKCSECSYSCSSKAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH-MKKF 60
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 50.9 bits (122), Expect = 5e-10
Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTR---EKPYACPTCEFKTGDHNVLRKHVQRHMPVK 78
QC +CGFT +KA+L H R+H + C C + + + H + P
Sbjct: 6 SGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPAL 65
Query: 79 KYQC 82
Sbjct: 66 LLAP 69
Score = 37.4 bits (87), Expect = 6e-05
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 3/61 (4%)
Query: 46 HTREKPYACPTCEFKTGDHNVLRKHVQRHMPV---KKYQCTFCSYSCTERFRLKDHTLAK 102
+ C C F L H ++H ++ C FC + + H
Sbjct: 2 SSGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKS 61
Query: 103 H 103
H
Sbjct: 62 H 62
Score = 34.7 bits (80), Expect = 7e-04
Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 4/51 (7%)
Query: 10 LKKHIREVHKRL---KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
L H R H F C CG + ++ H + A
Sbjct: 23 LNWHQR-KHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSHPALLLAPQES 72
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 51.0 bits (123), Expect = 5e-10
Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 7/88 (7%)
Query: 18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHM 75
CG T + + L+ H+R HT EKPY C C +K + L +H ++H
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 76 PVKKYQCTFCSYSCTERFRLKDHTLAKH 103
+ +QC C F DH LA H
Sbjct: 62 GHRPFQCQKCD----RAFSRSDH-LALH 84
Score = 47.5 bits (114), Expect = 1e-08
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Query: 10 LKKHIREVHKRLKPFQC--PVCGFTTGRKATLQLHVRQHTREKPYACPTCE--FKTGDHN 65
LK H+R H KP+ C CG+ R L H R+HT +P+ C C+ F DH
Sbjct: 23 LKAHLR-THTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDH- 80
Query: 66 VLRKHVQRHM 75
L H++RH
Sbjct: 81 -LALHMKRHF 89
Score = 29.8 bits (68), Expect = 0.065
Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 3/59 (5%)
Query: 45 QHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
+ T C + L+ H++ H K Y C + C +F D L +H
Sbjct: 1 KRTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDW--DGCGWKFARSDE-LTRH 56
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 48.7 bits (117), Expect = 7e-09
Identities = 30/83 (36%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 22 KPFQC--PVCGFTTGRKATLQLHVRQHTREKPYACPTCE----FKTGDHNVLRKHVQRHM 75
+PF C P C + + LQ+H R+HT EKPY C + F D L++H +RH
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQ--LKRHQRRHT 62
Query: 76 PVKKYQCTFCSYSCTERFRLKDH 98
VK +QC C + LK H
Sbjct: 63 GVKPFQCKTCQRKFSRSDHLKTH 85
Score = 44.8 bits (107), Expect = 2e-07
Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCE----FKTGDHN 65
LK+H R H +KPFQC C R L+ H R HT EKP++C F D
Sbjct: 54 LKRHQR-RHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDE- 111
Query: 66 VLRKHVQRH 74
L +H H
Sbjct: 112 -LVRHHNMH 119
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 47.9 bits (115), Expect = 8e-09
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKY 80
+KPFQC +C R L H+R HT EKP+AC C K + ++H +
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH-ILPI 59
Query: 81 QCTFCSYSCTERFRLKDH 98
++ + L++
Sbjct: 60 LEDKVEELLSKNYHLENE 77
Score = 25.9 bits (58), Expect = 1.7
Identities = 6/44 (13%), Positives = 13/44 (29%), Gaps = 5/44 (11%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHV---RQHTREK 50
K+H + P + L+ V ++ E+
Sbjct: 47 RKRHRD-IQHI-LPILEDKVEELLSKNYHLENEVARLKKLVGER 88
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 48.7 bits (117), Expect = 1e-08
Identities = 28/105 (26%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Query: 10 LKKHIRE--VHKRLKPFQCPVCGFTTGRKA-----TLQLHVRQHTREKPYACPTCE---- 58
L HI +H K F C G + + L +H+R+HT EKP+ C
Sbjct: 19 LVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKS 78
Query: 59 FKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
+ ++ L+ H++ H K Y C C++ F AKH
Sbjct: 79 YSRLEN--LKTHLRSHTGEKPYMCEH--EGCSKAFSNASD-RAKH 118
Score = 39.5 bits (93), Expect = 3e-05
Identities = 21/89 (23%), Positives = 30/89 (33%), Gaps = 14/89 (15%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQ---HTREKPYACPTCE-------FKTGDHNVLRKHV 71
+ C + L H+ H K + C FK L H+
Sbjct: 2 TDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYM--LVVHM 59
Query: 72 QRHMPVKKYQCTF--CSYSCTERFRLKDH 98
+RH K ++CTF C S + LK H
Sbjct: 60 RRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
Score = 33.0 bits (76), Expect = 0.007
Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 10 LKKHIREVHKRLKPFQC--PVCGFTTGRKATLQLH-VRQHTREKPYAC--PTCEFKTGDH 64
LK H+R H KP+ C C + H R H+ EKPY C P C + D
Sbjct: 85 LKTHLR-SHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDP 143
Query: 65 NVLRKHVQRH 74
+ LRKHV+
Sbjct: 144 SSLRKHVKTV 153
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 47.6 bits (114), Expect = 1e-08
Identities = 26/69 (37%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 10 LKKHIREVHKRLKPFQC--PVCGFTTGRKATLQLHVRQHTREKPYACPTCE--FKTGDHN 65
LK H+R H KP++C C + R L H R+HT KP+ C C F DH
Sbjct: 33 LKAHLR-THTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDH- 90
Query: 66 VLRKHVQRH 74
L H++RH
Sbjct: 91 -LALHMKRH 98
Score = 45.3 bits (108), Expect = 1e-07
Identities = 29/90 (32%), Positives = 41/90 (45%), Gaps = 11/90 (12%)
Query: 18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC--PTCE--FKTGDHNVLRKHVQR 73
+R+ P C + + L+ H+R HT EKPY C C+ F D L +H ++
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDE--LTRHYRK 69
Query: 74 HMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
H K +QC C+ F DH LA H
Sbjct: 70 HTGAKPFQCGVCN----RSFSRSDH-LALH 94
Score = 33.4 bits (77), Expect = 0.003
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHT 47
L +H R H KPFQC VC + R L LH+++H
Sbjct: 63 LTRHYR-KHTGAKPFQCGVCNRSFSRSDHLALHMKRHQ 99
Score = 25.7 bits (57), Expect = 2.0
Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 32 TTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTE 91
++G R H + P C K+ L+ H++ H K Y+CT+ C
Sbjct: 2 SSGSSGPDLEKRRIHYCDYPG-CTKVYTKSSH---LKAHLRTHTGEKPYKCTW--EGCDW 55
Query: 92 RFRLKDHTLAKH 103
RF D L +H
Sbjct: 56 RFARSDE-LTRH 66
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear
protein, DNA- binding, transcription, C2H2-type zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 47.0 bits (113), Expect = 2e-08
Identities = 28/77 (36%), Positives = 41/77 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
P +C VCG RK L+ H+R HT KPY C TC++ D + L KH++ H + ++
Sbjct: 7 GPHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFK 66
Query: 82 CTFCSYSCTERFRLKDH 98
C C Y+ +L H
Sbjct: 67 CQICPYASRNSSQLTVH 83
Score = 42.0 bits (100), Expect = 1e-06
Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
L KH+R +H +PF+C +C + + + L +H+R HT + +
Sbjct: 52 LNKHLR-IHSDERPFKCQICPYASRNSSQLTVHLRSHTGDSGPSS 95
Score = 29.7 bits (68), Expect = 0.064
Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 4/55 (7%)
Query: 46 HTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
P+ C C F D L+ H++ H VK Y+C C Y+ + L H
Sbjct: 3 SGSSGPHKCEVCGKCFSRKDK--LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKH 55
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc
finger, structural genomics, NPPSFA; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 46.4 bits (111), Expect = 2e-08
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTRE--KPYACPTCEFKTGDHNVL 67
R H KP++C +C + T+++H+ Q E + CP C+ + L
Sbjct: 3 SGSSGR-THSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 68 RKHVQRH 74
H+++
Sbjct: 62 GVHLRKQ 68
Score = 44.8 bits (107), Expect = 1e-07
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 38 TLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHM--PVKKYQCTFCSYSCTERFRL 95
+ R H+ EKPY C C + ++ H+ + V K+ C C + L
Sbjct: 2 SSGSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Query: 96 KDHTLAKH 103
H +H
Sbjct: 62 GVHLRKQH 69
Score = 42.1 bits (100), Expect = 1e-06
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 10 LKKHIREVH--KRLKPFQCPVCGFTTGRKATLQLHVR-QHTREKPYA 53
+K HI + + F CP C RK+ L +H+R QH+ P +
Sbjct: 31 MKMHIL-QKHTENVAKFHCPHCDTVIARKSDLGVHLRKQHSYSGPSS 76
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 47.1 bits (113), Expect = 3e-08
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 5/81 (6%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPV---- 77
+CP C K L++H R+HT EKP+ CP C L +H + +
Sbjct: 6 SGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH-EARNCMNRSE 64
Query: 78 KKYQCTFCSYSCTERFRLKDH 98
+ + C+ C + R L+ H
Sbjct: 65 QVFTCSVCQETFRRRMELRLH 85
Score = 43.3 bits (103), Expect = 7e-07
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Query: 10 LKKHIRE--VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
L +H +++ + F C VC T R+ L+LH+ HT E PY C +C
Sbjct: 51 LLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSC 100
Score = 30.2 bits (69), Expect = 0.071
Identities = 13/53 (24%), Positives = 21/53 (39%)
Query: 46 HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
+ CPTC K L+ H ++H K ++C C + L +H
Sbjct: 2 SSGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEH 54
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A
{Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB:
1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A*
1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 46.3 bits (111), Expect = 3e-08
Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPV 77
+P+ CPV C + +L H+R HT +KP+ C C F DH L H++ H
Sbjct: 3 RPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIRTHTGE 60
Query: 78 KKYQCTFCSYSCTERFRLKDH 98
K + C C K H
Sbjct: 61 KPFACDICGRKFARSDERKRH 81
Score = 45.9 bits (110), Expect = 4e-08
Identities = 23/48 (47%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
L +HIR +H KPFQC +C R L H+R HT EKP+AC C
Sbjct: 22 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDIC 68
Score = 35.1 bits (82), Expect = 6e-04
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
L HIR H KPF C +CG R + H + H R+K
Sbjct: 50 LTTHIR-THTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 27.4 bits (62), Expect = 0.38
Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)
Query: 49 EKPYACPTCE----FKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
E+PYACP F L +H++ H K +QC C + + L H
Sbjct: 2 ERPYACPVESCDRRFSQSGS--LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 53
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 45.6 bits (109), Expect = 3e-08
Identities = 19/52 (36%), Positives = 26/52 (50%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQR 73
+ F C VC R+ L+ H R HT EKPY C C ++L +H Q+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQK 52
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 79
Score = 46.0 bits (110), Expect = 3e-08
Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)
Query: 10 LKKHIREVHKRLKPFQCP--VCGFTTGRKATLQLHVRQHTREKPYACPTC 57
L H + H K F CP CG + K L+ H++ H+ + Y C
Sbjct: 25 LNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Score = 40.6 bits (96), Expect = 4e-06
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 9/71 (12%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVR-QHTREKPYACPTCE----FKTGDHNVLRKHVQRH 74
C CG + L H + QH +K ++CP F H L++H++ H
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKH--LKEHMKLH 63
Query: 75 MPVKKYQCTFC 85
+ Y C F
Sbjct: 64 SDTRDYICEFS 74
Score = 25.2 bits (56), Expect = 2.4
Identities = 6/21 (28%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 10 LKKHIREVHKRLKPFQCPVCG 30
LK+H++ +H + + C G
Sbjct: 56 LKEHMK-LHSDTRDYICEFSG 75
Score = 24.8 bits (55), Expect = 3.1
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 12/64 (18%)
Query: 46 HTREKPYACPTCE----FKTGDHNVLRKHVQR--HMPVKKYQCTFCSYSCTERFRLKDHT 99
+ C F + L H ++ H+ K + C +C + F K H
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQY--LNHH-KKYQHIHQKSFSCPEP--ACGKSFNFKKH- 55
Query: 100 LAKH 103
L +H
Sbjct: 56 LKEH 59
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 46.3 bits (111), Expect = 2e-07
Identities = 31/90 (34%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Query: 9 CLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLR 68
+ KP+ CP CG + R L H R HT EKPY CP C D L
Sbjct: 8 SSVAQAA-LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
Query: 69 KHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
+H + H K Y+C C S ++R L+ H
Sbjct: 67 RHQRTHTGEKPYKCPECGKSFSQRANLRAH 96
Score = 45.1 bits (108), Expect = 3e-07
Identities = 35/89 (39%), Positives = 45/89 (50%), Gaps = 1/89 (1%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
L +H R H KP++CP CG + ++A L+ H R HT EKPYACP C LR
Sbjct: 65 LTRHQR-THTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA 123
Query: 70 HVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
H + H K Y+C C S + L H
Sbjct: 124 HQRTHTGEKPYKCPECGKSFSREDNLHTH 152
Score = 40.9 bits (97), Expect = 1e-05
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
H+R KP++CP CG + R+ L H R HT EKPY CP C
Sbjct: 123 AHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPEC 167
Score = 34.3 bits (80), Expect = 0.003
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 6/67 (8%)
Query: 35 RKATLQLHVRQHTREKPYACPTCE--FKTGDHNVLRKHVQR-HMPVKKYQCTFCSYSCTE 91
++ EKPYACP C F DH L +H QR H K Y+C C S ++
Sbjct: 5 GSSSSVAQAALEPGEKPYACPECGKSFSRSDH--LAEH-QRTHTGEKPYKCPECGKSFSD 61
Query: 92 RFRLKDH 98
+ L H
Sbjct: 62 KKDLTRH 68
Score = 32.4 bits (75), Expect = 0.015
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
L H R H KP++CP CG + R+ L +H R HT +K
Sbjct: 149 LHTHQR-THTGEKPYKCPECGKSFSRRDALNVHQRTHTGKKT 189
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 44.7 bits (107), Expect = 2e-07
Identities = 26/78 (33%), Positives = 32/78 (41%), Gaps = 5/78 (6%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVL 67
K K F C CG + L +H R HT E+PY C C F+ DH L
Sbjct: 5 SSGGRL-PSKTKKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDH--L 61
Query: 68 RKHVQRHMPVKKYQCTFC 85
R H H K ++C C
Sbjct: 62 RDHRYIHSKEKPFKCQEC 79
Score = 40.1 bits (95), Expect = 1e-05
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
L+ H +H + KPF+C CG + TL +H H +
Sbjct: 61 LRDHRY-IHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTA 104
Score = 30.1 bits (69), Expect = 0.051
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 4/65 (6%)
Query: 36 KATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERF 93
+ +K + C C F + L H + H + Y C C + +
Sbjct: 2 SSGSSGGRLPSKTKKEFICKFCGRHFTKSYN--LLIHERTHTDERPYTCDICHKAFRRQD 59
Query: 94 RLKDH 98
L+DH
Sbjct: 60 HLRDH 64
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 43.8 bits (104), Expect = 2e-07
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 6/57 (10%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPTCE--FKTGDHNVLRKHVQRH 74
+P+ CPV C R L H+R HT +KP+ C C F DH L H++ H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDH--LTTHIRTH 72
Score = 36.1 bits (84), Expect = 2e-04
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 11/67 (16%)
Query: 41 LHVRQHTREKPYACP--TCE--FKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLK 96
L + +PYACP +C+ F D L +H++ H K +QC C F
Sbjct: 9 LLNYVVPKMRPYACPVESCDRRFSRSDE--LTRHIRIHTGQKPFQCRICM----RNFSRS 62
Query: 97 DHTLAKH 103
DH L H
Sbjct: 63 DH-LTTH 68
Score = 33.0 bits (76), Expect = 0.003
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHT 47
L +HIR +H KPFQC +C R L H+R HT
Sbjct: 37 LTRHIR-IHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 44.0 bits (105), Expect = 3e-07
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 6/81 (7%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHM--PV 77
C +CG L H H+ EKPY+CP C FK D + HV+ H
Sbjct: 6 SGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDR--MSYHVRSHDGSVG 63
Query: 78 KKYQCTFCSYSCTERFRLKDH 98
K Y C C + L H
Sbjct: 64 KPYICQSCGKGFSRPDHLNGH 84
Score = 28.6 bits (65), Expect = 0.18
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 10 LKKHIREVH--KRLKPFQCPVCGFTTGRKATLQLHVRQ-HTREK 50
+ H+R H KP+ C CG R L H++Q H+
Sbjct: 51 MSYHVR-SHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSGPS 93
Score = 28.2 bits (64), Expect = 0.22
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 4/55 (7%)
Query: 46 HTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
+ AC C F+ H L +H H K Y C C + R+ H
Sbjct: 2 SSGSSGVACEICGKIFRDVYH--LNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYH 54
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 44.4 bits (106), Expect = 3e-07
Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 9 CLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLR 68
+H+ +H L+P+ C VCG K L H++ HT KPY C C + +
Sbjct: 24 QRDRHMS-MHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFH 82
Query: 69 KHVQRHMPVKKYQCTFC 85
+HV K Y+
Sbjct: 83 RHV--TSCTKSYEAAKA 97
Score = 38.2 bits (90), Expect = 5e-05
Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
K + C CG + K+ H+ H +PY C C K + L H++ H +K Y+
Sbjct: 9 KLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYE 67
Query: 82 CTFC 85
C C
Sbjct: 68 CNIC 71
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 43.8 bits (104), Expect = 9e-07
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 10 LKKHIREVHKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYACPT--CEFKTGDHN 65
L HIR VH KPF CP CG R L++H R HT EKP+ C C+ + + +
Sbjct: 78 LVNHIR-VHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSS 136
Query: 66 VLRKHVQRHMPVKKYQCT 83
+KH+ H K +
Sbjct: 137 DRKKHMHVHTSDKSGPSS 154
Score = 38.0 bits (89), Expect = 1e-04
Identities = 16/80 (20%), Positives = 21/80 (26%), Gaps = 13/80 (16%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYA---------CPTCE--FKTGDHN 65
+ + C T L HV P CP FK
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK- 77
Query: 66 VLRKHVQRHMPVKKYQCTFC 85
L H++ H K + C F
Sbjct: 78 -LVNHIRVHTGEKPFPCPFP 96
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 86
Score = 42.1 bits (100), Expect = 1e-06
Identities = 8/40 (20%), Positives = 11/40 (27%)
Query: 18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
+ F C CG T R+ T+ H
Sbjct: 42 NFVPAAFVCSKCGKTFTRRNTMARHADNCAGPDGVEGENS 81
Score = 40.2 bits (95), Expect = 5e-06
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 5/80 (6%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTRE----KPYACPTCEFKTGDHN 65
R H KP+ C C T +K L +H +++ + C C N
Sbjct: 3 SGSSGR-THTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 66 VLRKHVQRHMPVKKYQCTFC 85
+ +H +
Sbjct: 62 TMARHADNCAGPDGVEGENS 81
Score = 36.0 bits (84), Expect = 2e-04
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 4/65 (6%)
Query: 38 TLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH----MPVKKYQCTFCSYSCTERF 93
+ R HT EKPYAC C+ +L H +R+ + C+ C + T R
Sbjct: 2 SSGSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRN 61
Query: 94 RLKDH 98
+ H
Sbjct: 62 TMARH 66
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 42.8 bits (100), Expect = 1e-06
Identities = 15/89 (16%), Positives = 26/89 (29%), Gaps = 5/89 (5%)
Query: 15 REVHKRLKPFQCPVCGFTTGRKATLQLHVR--QHTREKPYACPTCEFK---TGDHNVLRK 69
+ F+C C L +H+ H R+ + K L +
Sbjct: 11 GSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLE 70
Query: 70 HVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
+ K +C +C +S L H
Sbjct: 71 MEGKEDAQKVLKCMYCGHSFESLQDLSVH 99
Score = 31.7 bits (71), Expect = 0.019
Identities = 12/74 (16%), Positives = 22/74 (29%), Gaps = 4/74 (5%)
Query: 10 LKKHIREV----HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHN 65
L H+ E + ++ RK +L + +K C C
Sbjct: 35 LTVHMNETGHYRDDNHETDNNNPKRWSKPRKRSLLEMEGKEDAQKVLKCMYCGHSFESLQ 94
Query: 66 VLRKHVQRHMPVKK 79
L H+ + +K
Sbjct: 95 DLSVHMIKTKHYQK 108
Score = 30.1 bits (67), Expect = 0.059
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 5/69 (7%)
Query: 35 RKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQ-----RHMPVKKYQCTFCSYSC 89
++ +L+ T + C C L H+ R + +S
Sbjct: 3 SGSSGKLYGSIFTGASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 90 TERFRLKDH 98
+ L +
Sbjct: 63 PRKRSLLEM 71
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: g.37.1.1 g.37.1.1
Length = 72
Score = 41.7 bits (99), Expect = 1e-06
Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
+H KP+ C CG R + L H R HT EKPY C C
Sbjct: 2 SSGSSG-IHSGEKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLEC 48
Score = 37.8 bits (89), Expect = 4e-05
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 9 CLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
L +H R VH KP++C CG + + L H R HT
Sbjct: 29 ILVQHQR-VHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSSG 72
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 41.0 bits (97), Expect = 1e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
+P+ C CG GR + L H+++H REK
Sbjct: 6 SGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGP 43
Score = 30.2 bits (69), Expect = 0.019
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ E+PY C C G H+ L +H++RH K +
Sbjct: 3 SGSSGSGERPYGCNECGKNFGRHSHLIEHLKRHFREKSSGPS 44
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex,
double helix, transcription/DNA complex; HET: DNA;
2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 41.4 bits (98), Expect = 1e-06
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVR--QHTREKPYACPTC--EFKTGDHNVLRKHVQRH 74
++C VC + H K Y CP C EF D+ + HV+
Sbjct: 9 HTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDN--MTAHVKII 63
Score = 34.1 bits (79), Expect = 8e-04
Identities = 9/40 (22%), Positives = 16/40 (40%), Gaps = 1/40 (2%)
Query: 10 LKKHIR-EVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTR 48
+H + +K + CP C RK + HV+ +
Sbjct: 26 FCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Score = 32.1 bits (74), Expect = 0.005
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 2/57 (3%)
Query: 44 RQHTREKPYACPTCEFKTGDHNVLRKH--VQRHMPVKKYQCTFCSYSCTERFRLKDH 98
E Y C C + +H VK Y C FC T + + H
Sbjct: 3 FTKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAH 59
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 40.6 bits (96), Expect = 2e-06
Identities = 13/33 (39%), Positives = 15/33 (45%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPFQC CG +L H+R H R P
Sbjct: 11 KPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
Score = 29.1 bits (66), Expect = 0.056
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC 82
T EKP+ C C L KH++ H
Sbjct: 3 SGSSGTGEKPFQCKECGMNFSWSCSLFKHLRSHERTDPSGP 43
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 41.3 bits (98), Expect = 2e-06
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 1/48 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
+ + + ++C CG + + L H R HT EKPY C C
Sbjct: 6 SGRSEW-QQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
Score = 35.1 bits (82), Expect = 5e-04
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPY 52
L KH R H KP++C CG +++ L H R HT P
Sbjct: 34 LSKHRR-THTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPS 75
Score = 34.3 bits (80), Expect = 0.001
Identities = 13/52 (25%), Positives = 18/52 (34%)
Query: 34 GRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFC 85
G + Q + Y C C + L KH + H K Y+C C
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDEC 52
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 40.3 bits (95), Expect = 3e-06
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQ-HTREKPYACPTC 57
KP+ C CG R L H++Q HT E+P+ C
Sbjct: 6 SGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQVW 47
Score = 34.1 bits (79), Expect = 7e-04
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 5/47 (10%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQR-HMPVKKYQCTFC 85
+ KPY C +C F DH L H+++ H + ++C
Sbjct: 3 SGSSGSVGKPYICQSCGKGFSRPDH--LNGHIKQVHTSERPHKCQVW 47
Score = 29.1 bits (66), Expect = 0.063
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 10 LKKHIREVHKRLKPFQCPVCG--FTTG 34
L HI++VH +P +C V ++G
Sbjct: 28 LNGHIKQVHTSERPHKCQVWVSGPSSG 54
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 40.2 bits (95), Expect = 3e-06
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPF C C K+ L +H + H EKP
Sbjct: 9 KPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGP 41
Score = 25.2 bits (56), Expect = 1.5
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 46 HTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EKP+ C CE + L H Q H K +
Sbjct: 5 SSGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKPSGPS 42
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 40.5 bits (94), Expect = 3e-06
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKK 79
+ C CG + + L+ H+R HT +PY C C F L KH++ KK
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSKK 57
Score = 32.0 bits (72), Expect = 0.006
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
LKKHIR H ++P+ C C F+ K L H++ K
Sbjct: 17 LKKHIR-THTDVRPYHCTYCNFSFKTKGNLTKHMKSKAHSK 56
Score = 28.1 bits (62), Expect = 0.13
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 52 YACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
Y C C + ++L+KH++ H V+ Y CT+C++S + L H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 41.3 bits (98), Expect = 4e-06
Identities = 27/96 (28%), Positives = 39/96 (40%), Gaps = 10/96 (10%)
Query: 9 CLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCE----FKTGDH 64
++KH+ H + C CG + L+ H HT EKP+ C F +
Sbjct: 22 AMRKHLH-THGP-RVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 79
Query: 65 NVLRKHVQRHMPVKKYQCTF--CSYSCTERFRLKDH 98
LR HV+ H + Y C F C+ + LK H
Sbjct: 80 --LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSH 113
Score = 26.3 bits (59), Expect = 1.5
Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 48 REKPYACPTCE----FKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDH 98
+ ACP F+ +RKH+ H P + + C C + E +LK H
Sbjct: 2 EPRTIACPHKGCTKMFRDNSA--MRKHLHTHGP-RVHVCAECGKAFVESSKLKRH 53
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.8 bits (94), Expect = 4e-06
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C CG T +K+ L H R HT EKP
Sbjct: 2 SSGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.13
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EKPY C C ++L H + H K +
Sbjct: 3 SGSSGSGEKPYGCNECGKTFSQKSILSAHQRTHTGEKPSGPS 44
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 40.5 bits (96), Expect = 4e-06
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
L H+ +H +P+ C CG +K+ ++ H HT EKP+ C C
Sbjct: 17 LSTHLL-IHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVC 63
Score = 35.1 bits (82), Expect = 4e-04
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 4/64 (6%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQ 81
F C +CG + R +TL H+ H+ +PY C C F ++KH H K ++
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSD--MKKHTFIHTGEKPHK 59
Query: 82 CTFC 85
C C
Sbjct: 60 CQVC 63
Score = 27.8 bits (63), Expect = 0.31
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHT 47
+KKH +H KP +C VCG + + L H R+HT
Sbjct: 45 MKKHTF-IHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-06
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
+PF+C CG GR++ L H+R H+REK
Sbjct: 11 RPFKCNECGKGFGRRSHLAGHLRLHSREKSSGP 43
Score = 25.6 bits (57), Expect = 0.87
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ E+P+ C C F H L H++ H K +
Sbjct: 3 SGSSGSGERPFKCNECGKGFGRRSH--LAGHLRLHSREKSSGPS 44
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 40.1 bits (95), Expect = 5e-06
Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 1/48 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
H + KP++C C + K L H HT EKPY C C
Sbjct: 5 HHHHSH-MTHSDKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNIC 51
Score = 37.0 bits (87), Expect = 7e-05
Identities = 19/43 (44%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPY 52
L H VH KP++C +CG R A L+ H R H+ EKPY
Sbjct: 33 LASHKT-VHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKPY 74
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 39.0 bits (92), Expect = 7e-06
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C C K+ L +H R HT E +
Sbjct: 2 SSGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 26.7 bits (60), Expect = 0.41
Identities = 10/41 (24%), Positives = 13/41 (31%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC 82
T EKPY C C+ + L H + H
Sbjct: 3 SGSSGTGEKPYECNECQKAFNTKSNLMVHQRTHTGESGPSS 43
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-06
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPF+C +CG + ++ L H HT EKP
Sbjct: 2 SSGSSGTGEKPFKCDICGKSFCGRSRLNRHSMVHTAEKPSGP 43
Score = 27.5 bits (62), Expect = 0.21
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKP+ C C F L +H H K +
Sbjct: 3 SGSSGTGEKPFKCDICGKSFCGRSR--LNRHSMVHTAEKPSGPS 44
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 8e-06
Identities = 13/42 (30%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
P++C CG RK L H R H EKP
Sbjct: 2 SSGSSGTGENPYECHECGKAFSRKYQLISHQRTHAGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.25
Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T E PY C C F L H + H K +
Sbjct: 3 SGSSGTGENPYECHECGKAFSRKYQ--LISHQRTHAGEKPSGPS 44
>2epa_A Krueppel-like factor 10; transforming growth
factor-beta-inducible early growth response protein 1,
TGFB-inducible early growth response protein 1; NMR
{Homo sapiens}
Length = 72
Score = 39.7 bits (93), Expect = 8e-06
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 18 HKRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQR 73
R++ C CG T + + L+ H R HT EKP++C CE + + L +H +
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRT 71
Query: 74 H 74
H
Sbjct: 72 H 72
Score = 28.5 bits (64), Expect = 0.16
Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 9/72 (12%)
Query: 36 KATLQLHVRQHTREKPYAC--PTCE--FKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTE 91
+ +R + + C P C + H L+ H + H K + C++ C
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSH--LKAHTRTHTGEKPFSCSW--KGCER 57
Query: 92 RFRLKDHTLAKH 103
RF D L++H
Sbjct: 58 RFARSDE-LSRH 68
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-05
Identities = 14/38 (36%), Positives = 17/38 (44%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
+ KP+QC CG + L H HTREKP
Sbjct: 6 SGEGEKPYQCSECGKSFSGSYRLTQHWITHTREKPSGP 43
Score = 24.8 bits (55), Expect = 1.7
Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
EKPY C C F L +H H K +
Sbjct: 3 SGSSGEGEKPYQCSECGKSFSGSYR--LTQHWITHTREKPSGPS 44
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 1e-05
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
K ++C VCG + + LQ H R HT EKP
Sbjct: 2 SSGSSGMGEKCYKCDVCGKEFSQSSHLQTHQRVHTGEKPSGP 43
Score = 29.0 bits (66), Expect = 0.050
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
EK Y C C EF H L+ H + H K +
Sbjct: 3 SGSSGMGEKCYKCDVCGKEFSQSSH--LQTHQRVHTGEKPSGPS 44
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 38.7 bits (91), Expect = 1e-05
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
+P++C CG K++L H R HT EKP
Sbjct: 2 SSGS-SGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.14
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T ++PY C C + L H + H K +
Sbjct: 3 SGSSGTGQRPYECIECGKAFKTKSSLICHRRSHTGEKPSGPS 44
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 38.7 bits (91), Expect = 1e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C C T K+ L +H R HT KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGP 43
Score = 28.3 bits (64), Expect = 0.095
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T KPY C C + L H + H VK +
Sbjct: 3 SGSSGTGVKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPS 44
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 13/42 (30%), Positives = 17/42 (40%), Gaps = 4/42 (9%)
Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C VC A+L H R H+ EKP
Sbjct: 2 SSGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGP 43
Score = 28.6 bits (65), Expect = 0.080
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C H L +H + H K +
Sbjct: 3 SGSSGTGEKPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPS 44
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP +C CG K+ L +H R H +K
Sbjct: 11 KPCKCTECGKAFCWKSQLIMHQRTHVDDKHSGP 43
Score = 27.5 bits (62), Expect = 0.18
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKP C C F L H + H+ K +
Sbjct: 3 SGSSGTGEKPCKCTECGKAFCWKSQ--LIMHQRTHVDDKHSGPS 44
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPF+C CG R++ L +H + HT EKP
Sbjct: 11 KPFKCVECGKGFSRRSALNVHHKLHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.11
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKP+ C C + L H + H K +
Sbjct: 3 SGSSGTGEKPFKCVECGKGFSRRSALNVHHKLHTGEKPSGPS 44
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 2e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPF+C C K+ L +H R HT EKP
Sbjct: 11 KPFECSECQKAFNTKSNLIVHQRTHTGEKPSGP 43
Score = 27.4 bits (62), Expect = 0.21
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKP+ C C+ + L H + H K +
Sbjct: 3 SGSSGTGEKPFECSECQKAFNTKSNLIVHQRTHTGEKPSGPS 44
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 2e-05
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG RK+ L +H + HT E+
Sbjct: 11 KPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGP 43
Score = 28.2 bits (64), Expect = 0.085
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + L H Q H + +
Sbjct: 3 SGSSGTGEKPYKCSDCGKAFTRKSGLHIHQQSHTGERHSGPS 44
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C CG K+ L +H+R H+ EKP
Sbjct: 11 KPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.13
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
EKPY C C + L H++ H K +
Sbjct: 3 SGSSGAGEKPYGCSECGKAFSSKSYLIIHMRTHSGEKPSGPS 44
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
K F+C CG RK+TL +H + HT EKP
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.82
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T K + C C + L H + H K +
Sbjct: 3 SGSSGTGGKHFECTECGKAFTRKSTLSMHQKIHTGEKPSGPS 44
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
PDB: 2yta_A
Length = 42
Score = 38.0 bits (89), Expect = 2e-05
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
P+ C CG + ++ +L +H R ++ P +
Sbjct: 10 TPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 24.2 bits (53), Expect = 3.1
Identities = 5/16 (31%), Positives = 5/16 (31%)
Query: 42 HVRQHTREKPYACPTC 57
E PY C C
Sbjct: 2 SSGSSGGETPYLCGQC 17
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C VC +KA L H + HT EKP
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.077
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C F H L +H + H K +
Sbjct: 3 SGSSGTGEKPYECKVCSKAFTQKAH--LAQHQKTHTGEKPSGPS 44
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C C T + L H R HT E+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 25.6 bits (57), Expect = 0.96
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 4/43 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQC 82
+ +KPY C C F H L +H + H +
Sbjct: 3 SGSSGSGKKPYECKECRKTFIQIGH--LNQHKRVHTGERSSGP 43
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
P++C C + K L +H R HTREKP
Sbjct: 11 NPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGP 43
Score = 26.7 bits (60), Expect = 0.36
Identities = 9/42 (21%), Positives = 11/42 (26%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
PY C CE L H + H K +
Sbjct: 3 SGSSGAGVNPYKCSQCEKSFSGKLRLLVHQRMHTREKPSGPS 44
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG R+ L +H R H EK
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLNLDMHQRVHMGEKTSGP 43
Score = 27.5 bits (62), Expect = 0.18
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EKPY C C + + L H + HM K +
Sbjct: 3 SGSSGSVEKPYKCEDCGKGYNRRLN--LDMHQRVHMGEKTSGPS 44
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
+ ++C CG RK+TL +H R HT EKP
Sbjct: 11 RHYECSECGKAFARKSTLIMHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.41
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T E+ Y C C + L H + H K +
Sbjct: 3 SGSSGTGERHYECSECGKAFARKSTLIMHQRIHTGEKPSGPS 44
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
K + C CG + R L H R H+ EKP
Sbjct: 11 KLYNCKECGKSFSRAPCLLKHERLHSGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.11
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EK Y C C L KH + H K +
Sbjct: 3 SGSSGTGEKLYNCKECGKSFSRAPCLLKHERLHSGEKPSGPS 44
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C VCG A L H+R HT+E
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQHLRVHTQETLSGP 43
Score = 28.2 bits (64), Expect = 0.10
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY+C C F H L +H++ H +
Sbjct: 3 SGSSGTGEKPYSCNVCGKAFVLSAH--LNQHLRVHTQETLSGPS 44
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 45
Score = 37.9 bits (89), Expect = 2e-05
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPF+C CG + K L H R HT EK
Sbjct: 11 KPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPS 43
Score = 27.1 bits (61), Expect = 0.22
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T +KP+ C C L H + H K +
Sbjct: 3 SGSSGTGQKPFECTHCGKSFRAKGNLVTHQRIHTGEKSGPSS 44
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 15/33 (45%), Positives = 17/33 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPFQC CG + + L H R HT EKP
Sbjct: 11 KPFQCEECGKRFTQNSHLHSHQRVHTGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.067
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EKP+ C C F H L H + H K +
Sbjct: 3 SGSSGSGEKPFQCEECGKRFTQNSH--LHSHQRVHTGEKPSGPS 44
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C +CG + +K+ L +H + HT EKP
Sbjct: 2 SSGS-SGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.13
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + L H Q H K +
Sbjct: 3 SGSSGTGEKPYECSICGKSFTKKSQLHVHQQIHTGEKPSGPS 44
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 12/33 (36%), Positives = 15/33 (45%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
PF C CG K L +H + HT E+P
Sbjct: 11 NPFICSECGKVFTHKTNLIIHQKIHTGERPSGP 43
Score = 26.7 bits (60), Expect = 0.41
Identities = 8/42 (19%), Positives = 12/42 (28%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T E P+ C C L H + H + +
Sbjct: 3 SGSSGTGENPFICSECGKVFTHKTNLIIHQKIHTGERPSGPS 44
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 37.5 bits (88), Expect = 3e-05
Identities = 11/33 (33%), Positives = 14/33 (42%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
P++C CG RK L H R H E +
Sbjct: 9 NPYECSECGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 23.2 bits (51), Expect = 6.7
Identities = 10/41 (24%), Positives = 12/41 (29%), Gaps = 4/41 (9%)
Query: 44 RQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQC 82
+ E PY C C F D L H + H
Sbjct: 3 SGSSGENPYECSECGKAFNRKDQ--LISHQRTHAGESGPSS 41
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C VCG + +L +H R H+ +KP
Sbjct: 2 SSGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGP 43
Score = 28.2 bits (64), Expect = 0.10
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C L H + H K +
Sbjct: 3 SGSSGTGEKPYECSVCGKAFSHRQSLSVHQRIHSGKKPSGPS 44
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 12/38 (31%), Positives = 15/38 (39%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPF+C CG + H R H+ EKP
Sbjct: 6 SGSGEKPFKCEECGKGFYTNSQCYSHQRSHSGEKPSGP 43
Score = 29.1 bits (66), Expect = 0.053
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EKP+ C C F T H + H K +
Sbjct: 3 SGSSGSGEKPFKCEECGKGFYTNSQ--CYSHQRSHSGEKPSGPS 44
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.5 bits (88), Expect = 3e-05
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C CG K+ L +H R HT E +
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 27.1 bits (61), Expect = 0.25
Identities = 9/41 (21%), Positives = 11/41 (26%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC 82
T KPY C C + L H + H
Sbjct: 3 SGSSGTGMKPYVCNECGKAFRSKSYLIIHTRTHTGESGPSS 43
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 14/41 (34%), Positives = 14/41 (34%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPF C CG L H R HT EKP
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGP 43
Score = 29.4 bits (67), Expect = 0.038
Identities = 12/42 (28%), Positives = 16/42 (38%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKP+ C C DH L +H + H K +
Sbjct: 3 SGSSGTGEKPFDCIDCGKAFSDHIGLNQHRRIHTGEKPSGPS 44
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 39.0 bits (90), Expect = 3e-05
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQ-RHMPVKK---YQCTFCSYSCTERFRLKD 97
+ + E Y C C F+T D N+ HV H V Y C C++ L +
Sbjct: 9 NQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSE 68
Query: 98 HTLAKHNPGTD 108
H K++PG +
Sbjct: 69 HN-LKYHPGEE 78
Score = 37.1 bits (85), Expect = 1e-04
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 4/68 (5%)
Query: 13 HIREVHKRLKPFQCPVCGFTTGRKATLQLHVR-QHT---REKPYACPTCEFKTGDHNVLR 68
H ++ K ++C C F T HV +H Y C C F T ++ L
Sbjct: 8 HNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALS 67
Query: 69 KHVQRHMP 76
+H ++ P
Sbjct: 68 EHNLKYHP 75
Score = 29.4 bits (65), Expect = 0.095
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 64 HNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
H+ + Q Y+C +C++ + H ++H
Sbjct: 3 HHHHHHNQQNKKVEGGYECKYCTFQTPDLNMFTFHVDSEH 42
Score = 28.6 bits (63), Expect = 0.22
Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 5 ADIKCLKKHIREVHKRLK---PFQCPVCGFTTGRKATLQLHV-RQHTREKPYAC 54
D+ H+ H + + C C F T R L H + H E+ +
Sbjct: 29 PDLNMFTFHVDSEHPNVVLNSSYVCVECNFLTKRYDALSEHNLKYHPGEENFKL 82
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 10/40 (25%), Positives = 14/40 (35%)
Query: 15 REVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
+ +C CG + + H R HT EKP
Sbjct: 4 GSSGHGERGHRCSDCGKFFLQASNFIQHRRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.47
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 42 HVRQHTREKPYACPTC 57
E+ + C C
Sbjct: 3 SGSSGHGERGHRCSDC 18
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.5 bits (88), Expect = 3e-05
Identities = 14/33 (42%), Positives = 15/33 (45%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
K QC CG K+ L H R HT EKP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKPSGP 43
Score = 25.2 bits (56), Expect = 1.5
Identities = 3/16 (18%), Positives = 5/16 (31%)
Query: 42 HVRQHTREKPYACPTC 57
+ K + C C
Sbjct: 3 SGSSGSSTKSHQCHEC 18
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 37.1 bits (87), Expect = 4e-05
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPF+C CG + + L H R HT EKP
Sbjct: 2 SSGS-SGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.19
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKP+ C C + L H + H K +
Sbjct: 3 SGSSGTGEKPFECAECGKSFSISSQLATHQRIHTGEKPSGPS 44
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-05
Identities = 14/41 (34%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C CG + +K+ L H R HT EKP
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.35
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + L +H + H K +
Sbjct: 3 SGSSGTGEKPYICNECGKSFIQKSHLNRHRRIHTGEKPSGPS 44
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 37.2 bits (87), Expect = 4e-05
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
+ ++C CG + +K +L LH R HT P +
Sbjct: 9 RVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-05
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG R+ L H R HT EK
Sbjct: 2 SSGS-SGSGEKPYKCVECGKGYKRRLDLDFHQRVHTGEKLSGP 43
Score = 27.1 bits (61), Expect = 0.23
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EKPY C C +K L H + H K +
Sbjct: 3 SGSSGSGEKPYKCVECGKGYKRRLD--LDFHQRVHTGEKLSGPS 44
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 4e-05
Identities = 10/33 (30%), Positives = 16/33 (48%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
K ++C C + ++L+LH H EKP
Sbjct: 11 KTWKCRECDMCFSQASSLRLHQNVHVGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.16
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
EK + C C+ + LR H H+ K +
Sbjct: 3 SGSSGMGEKTWKCRECDMCFSQASSLRLHQNVHVGEKPSGPS 44
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 37.3 bits (87), Expect = 4e-05
Identities = 14/46 (30%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 13 HIREVHKRLKPFQC--PVCGFTTGRKATLQLHVRQHTREKPYACPT 56
KPF C P CG+ R L H R H+ KP +
Sbjct: 3 SGS-SGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPSS 47
Score = 35.0 bits (81), Expect = 3e-04
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Query: 42 HVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKP+AC P C ++ + L +H + H VK +
Sbjct: 3 SGSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 4e-05
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
+ ++C CG +K+TL +H R H EKP
Sbjct: 11 RHYECSECGKAFIQKSTLSMHQRIHRGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.24
Identities = 9/42 (21%), Positives = 13/42 (30%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T E+ Y C C + L H + H K +
Sbjct: 3 SGSSGTGERHYECSECGKAFIQKSTLSMHQRIHRGEKPSGPS 44
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 37.1 bits (87), Expect = 4e-05
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP+ C +CG TL+ H+R HT P +
Sbjct: 10 KPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 28.2 bits (64), Expect = 0.11
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH 74
EKPY C C + L+ H++ H
Sbjct: 2 SSGSSGGEKPYPCEICGTRFRHLQTLKSHLRIH 34
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG +++L +H H+ EKP
Sbjct: 11 KPYKCNECGKAFRARSSLAIHQATHSGEKPSGP 43
Score = 27.9 bits (63), Expect = 0.13
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + L H H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRARSSLAIHQATHSGEKPSGPS 44
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-05
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C VC + ++L +H R HT EKP
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.22
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + L H + H K +
Sbjct: 3 SGSSGTGEKPYKCDVCHKSFRYGSSLTVHQRIHTGEKPSGPS 44
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 5e-05
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + L H HT EKP
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.089
Identities = 11/42 (26%), Positives = 12/42 (28%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C L H H K +
Sbjct: 3 SGSSGTGEKPYKCEECGKGFICRRDLYTHHMVHTGEKPSGPS 44
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 5e-05
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG K L +H + HT E+P
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFNLDMHQKVHTGERPSGP 43
Score = 27.1 bits (61), Expect = 0.29
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + + + L H + H + +
Sbjct: 3 SGSSGTGEKPYKCEKCGKGYNSKFN--LDMHQKVHTGERPSGPS 44
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 5e-05
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + +K+ L +H R HT E P
Sbjct: 2 SSGS-SGTGEKPYECSDCGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 26.3 bits (59), Expect = 0.44
Identities = 7/16 (43%), Positives = 7/16 (43%)
Query: 42 HVRQHTREKPYACPTC 57
T EKPY C C
Sbjct: 3 SGSSGTGEKPYECSDC 18
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.7 bits (86), Expect = 5e-05
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
P++C CG RK L H + H+ + +
Sbjct: 11 NPYECCECGKVFSRKDQLVSHQKTHSGQSGPSS 43
Score = 25.2 bits (56), Expect = 1.6
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 42 HVRQHTREKPYACPTC 57
T E PY C C
Sbjct: 3 SGSSGTGENPYECCEC 18
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPF+C CG + + L H R HT EKP
Sbjct: 11 KPFKCEECGKRFTQNSQLHSHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.36
Identities = 10/44 (22%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EKP+ C C F L H + H K +
Sbjct: 3 SGSSGSGEKPFKCEECGKRFTQNSQ--LHSHQRVHTGEKPSGPS 44
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-05
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 4/42 (9%)
Query: 17 VHKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + + L H HT EKP
Sbjct: 2 SSGSSGTGKKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.51
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T +KPY C C F H L +H H K +
Sbjct: 3 SGSSGTGKKPYKCNECGKVFTQNSH--LARHRGIHTGEKPSGPS 44
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 6e-05
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG +KA L H R HT EKP
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQRIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.31
Identities = 11/42 (26%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C L +H + H K +
Sbjct: 3 SGSSGTGEKPYRCGECGKAFAQKANLTQHQRIHTGEKPSGPS 44
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 7e-05
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP +C CG + + L +H R HT E P
Sbjct: 2 SSGS-SGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGP 43
Score = 27.5 bits (62), Expect = 0.17
Identities = 9/42 (21%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKP+ C C ++ L H + H +
Sbjct: 3 SGSSGTGEKPHECRECGKSFSFNSQLIVHQRIHTGENPSGPS 44
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 7e-05
Identities = 11/43 (25%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C VCG + L H H+ E+P
Sbjct: 2 SSGS-SGTGEKPYKCQVCGKAFRVSSHLVQHHSVHSGERPSGP 43
Score = 27.9 bits (63), Expect = 0.13
Identities = 12/44 (27%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C F+ H L +H H + +
Sbjct: 3 SGSSGTGEKPYKCQVCGKAFRVSSH--LVQHHSVHSGERPSGPS 44
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 36.4 bits (85), Expect = 7e-05
Identities = 12/38 (31%), Positives = 16/38 (42%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C CG + + L H R H+ EKP
Sbjct: 6 SGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGP 43
Score = 28.7 bits (65), Expect = 0.069
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + L KH + H K +
Sbjct: 3 SGSSGTGEKPYNCKECGKSFRWASCLLKHQRVHSGEKPSGPS 44
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 37.6 bits (88), Expect = 7e-05
Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 6/80 (7%)
Query: 26 CPVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
CG + L++H HT++ PY C C+ + + L++H + H +
Sbjct: 6 FENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD- 64
Query: 84 FCSYSCTERFRLKDHTLAKH 103
SC+ + L
Sbjct: 65 ---DSCSFVGKTWTLYLKHV 81
Score = 33.7 bits (78), Expect = 0.002
Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 9/69 (13%)
Query: 10 LKKHIREVHKRLKPFQC--PVCGFTTGRKATLQLHVRQHT---REKPYACPTCEFKTGDH 64
LK H H + P++C C + L+ H + H +K +C KT
Sbjct: 19 LKVHQF-SHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDSCSFV-GKTWTL 76
Query: 65 NVLRKHVQR 73
KHV
Sbjct: 77 --YLKHVAE 83
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 7e-05
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + K+ L++H + HT E+
Sbjct: 11 KPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGP 43
Score = 29.0 bits (66), Expect = 0.050
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + LR H + H + +
Sbjct: 3 SGSSGTGEKPYKCSDCGKSFTWKSRLRIHQKCHTGERHSGPS 44
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-05
Identities = 14/33 (42%), Positives = 17/33 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPF+C CG + L H+R HT EKP
Sbjct: 11 KPFKCKECGKAFRQNIHLASHLRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.35
Identities = 11/44 (25%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EKP+ C C F+ H L H++ H K +
Sbjct: 3 SGSSGSGEKPFKCKECGKAFRQNIH--LASHLRIHTGEKPSGPS 44
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-05
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C CG G A L H R HT EKP
Sbjct: 11 KPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGP 43
Score = 28.2 bits (64), Expect = 0.097
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EKPY C C G L +H + H K +
Sbjct: 3 SGSSGSGEKPYVCDYCGKAFGLSAELVRHQRIHTGEKPSGPS 44
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-05
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
K F+C C T + ++L +H R HT EKP
Sbjct: 11 KLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.42
Identities = 7/42 (16%), Positives = 13/42 (30%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
+K + C C+ + L H + H K +
Sbjct: 3 SGSSGAGKKLFKCNECKKTFTQSSSLTVHQRIHTGEKPSGPS 44
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-05
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KPF+C CG + ++ L H R HT EKP
Sbjct: 11 KPFKCGECGKSYNQRVHLTQHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.37
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKP+ C C + H L +H + H K +
Sbjct: 3 SGSSGTGEKPFKCGECGKSYNQRVH--LTQHQRVHTGEKPSGPS 44
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 8e-05
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
+P+ C VCG ++ L H + HT EKP
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.20
Identities = 12/41 (29%), Positives = 15/41 (36%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC 82
T E+PY C C D + L KH + H K
Sbjct: 3 SGSSGTGERPYICTVCGKAFTDRSNLIKHQKIHTGEKPSGP 43
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 36.3 bits (85), Expect = 8e-05
Identities = 13/33 (39%), Positives = 16/33 (48%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + L H R HT EKP
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQRVHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.38
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C F H L +H + H K +
Sbjct: 3 SGSSGTGEKPYECKECGKAFSQTTH--LIQHQRVHTGEKPSGPS 44
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.4 bits (85), Expect = 9e-05
Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+QC CG + + L H R HT EKP
Sbjct: 2 SSGS-SGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.11
Identities = 10/42 (23%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T KPY C C + L +H + H K +
Sbjct: 3 SGSSGTGGKPYQCNECGKAFSQTSKLARHQRVHTGEKPSGPS 44
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.3 bits (85), Expect = 9e-05
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C CG ++ L H + HT++KP
Sbjct: 11 KPYICAECGKAFTIRSNLIKHQKIHTKQKPSGP 43
Score = 27.5 bits (62), Expect = 0.20
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + L KH + H K +
Sbjct: 3 SGSSGTGEKPYICAECGKAFTIRSNLIKHQKIHTKQKPSGPS 44
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 42
Score = 36.0 bits (84), Expect = 1e-04
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP++C CG +K +L +H+R HT P +
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 26.4 bits (59), Expect = 0.41
Identities = 6/16 (37%), Positives = 6/16 (37%)
Query: 42 HVRQHTREKPYACPTC 57
EKPY C C
Sbjct: 2 SSGSSGGEKPYRCDQC 17
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 1e-04
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + L H HT EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.23
Identities = 12/42 (28%), Positives = 14/42 (33%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C H+ L H H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPS 44
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 1e-04
Identities = 11/33 (33%), Positives = 17/33 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG +++L H HT +KP
Sbjct: 11 KPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGP 43
Score = 27.9 bits (63), Expect = 0.15
Identities = 11/42 (26%), Positives = 13/42 (30%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + L H H K +
Sbjct: 3 SGSSGTGEKPYECNQCGKAFSVRSSLTTHQAIHTGKKPSGPS 44
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 44
Score = 36.0 bits (84), Expect = 1e-04
Identities = 10/38 (26%), Positives = 15/38 (39%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG K+ L +H R H +
Sbjct: 6 SGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 27.5 bits (62), Expect = 0.19
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC 82
+ EKPY C C ++L H + H V
Sbjct: 3 SGSSGSGEKPYECNECGKAFIWKSLLIVHERTHAGVSGPSS 43
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 36.0 bits (84), Expect = 1e-04
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
K ++C CG R + L H + HT EKP
Sbjct: 2 SSGS-SGTGEKRYKCNECGKVFSRNSQLSQHQKIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.62
Identities = 11/44 (25%), Positives = 14/44 (31%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EK Y C C F L +H + H K +
Sbjct: 3 SGSSGTGEKRYKCNECGKVFSRNSQ--LSQHQKIHTGEKPSGPS 44
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 1e-04
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + L H R HT EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSYLSRHQRIHTGEKPSGP 43
Score = 26.7 bits (60), Expect = 0.34
Identities = 12/44 (27%), Positives = 17/44 (38%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C F+ + L +H + H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFRHNSY--LSRHQRIHTGEKPSGPS 44
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 1e-04
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG R L H R HT +P
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTHLNEHRRIHTGYRPSGP 43
Score = 27.1 bits (61), Expect = 0.30
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EKPY C C F H L +H + H + +
Sbjct: 3 SGSSGSGEKPYKCSECGKAFHRHTH--LNEHRRIHTGYRPSGPS 44
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 1e-04
Identities = 12/41 (29%), Positives = 15/41 (36%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C CG ++L H HT EKP
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 27.1 bits (61), Expect = 0.31
Identities = 10/41 (24%), Positives = 12/41 (29%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC 82
T KPY C C ++ L H H K
Sbjct: 3 SGSSGTGVKPYMCNECGKAFSVYSSLTTHQVIHTGEKPSGP 43
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 38.0 bits (89), Expect = 1e-04
Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 5/69 (7%)
Query: 10 LKKHIREVHKRLKPFQC--PVCGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGDHN 65
L+ H+ H KPF C C L H HT EK + C C+ +
Sbjct: 30 LQAHLC-KHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKA 88
Query: 66 VLRKHVQRH 74
++KH R
Sbjct: 89 NMKKHFNRF 97
Score = 35.3 bits (82), Expect = 0.001
Identities = 20/85 (23%), Positives = 36/85 (42%), Gaps = 10/85 (11%)
Query: 10 LKKHIREVH--KRLKPFQCPV--CGFTTGRKATLQLHVRQHTREKPYAC--PTCEFKTGD 63
+KKH ++ + C CG + L++H HT++ PY C C+ +
Sbjct: 90 MKKHFN-RFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSL 148
Query: 64 HNVLRKHVQRH---MPVKKYQCTFC 85
+ L++H + H K C+F
Sbjct: 149 PSRLKRHEKVHAGYPCKKDDSCSFV 173
Score = 34.9 bits (81), Expect = 0.002
Identities = 29/98 (29%), Positives = 40/98 (40%), Gaps = 12/98 (12%)
Query: 12 KHIREVHKRLKPFQC--PVCGFTTGRKATLQLHVRQHTREKPYAC--PTCE--FKTGDHN 65
+ K + C CG + LQ H+ +HT EKP+ C CE F + H
Sbjct: 2 GEKA-LPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHH- 59
Query: 66 VLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAKH 103
L +H H K + C S C RF K + + KH
Sbjct: 60 -LTRHSLTHTGEKNFTCD--SDGCDLRFTTKAN-MKKH 93
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 2e-04
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + + L H HT EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRGIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.78
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C F H L +H H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSH--LARHRGIHTGEKPSGPS 44
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 2e-04
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + + L H R HT KP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLARHRRVHTGGKPSGP 43
Score = 25.9 bits (58), Expect = 0.70
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C F H L +H + H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSH--LARHRRVHTGGKPSGPS 44
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 2e-04
Identities = 14/43 (32%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C CG + LQ H R HT EKP
Sbjct: 2 SSGS-SGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGP 43
Score = 28.3 bits (64), Expect = 0.092
Identities = 11/42 (26%), Positives = 16/42 (38%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + L++H + H K +
Sbjct: 3 SGSSGTGEKPYNCEECGKAFIHDSQLQEHQRIHTGEKPSGPS 44
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 2e-04
Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG R + L H HT EKP
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSHLARHQLIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.68
Identities = 13/44 (29%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C F+ H L +H H K +
Sbjct: 3 SGSSGTGEKPYKCHECGKVFRRNSH--LARHQLIHTGEKPSGPS 44
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 2e-04
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + + L H R HT KP
Sbjct: 11 KPYKCNECGKVFTQNSHLANHQRIHTGVKPSGP 43
Score = 26.7 bits (60), Expect = 0.35
Identities = 14/44 (31%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C F H L H + H VK +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSH--LANHQRIHTGVKPSGPS 44
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 2e-04
Identities = 12/33 (36%), Positives = 17/33 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG ++ L H + HT EKP
Sbjct: 11 KPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 27.5 bits (62), Expect = 0.17
Identities = 12/41 (29%), Positives = 14/41 (34%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQC 82
T EKPY C C D + L H + H K
Sbjct: 3 SGSSGTGEKPYRCAECGKAFTDRSNLFTHQKIHTGEKPSGP 43
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 2e-04
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG G ++ H R HT ++P
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGP 43
Score = 29.9 bits (68), Expect = 0.028
Identities = 11/42 (26%), Positives = 17/42 (40%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C GD++ +H + H + +
Sbjct: 3 SGSSGTGEKPYKCMECGKAFGDNSSCTQHQRLHTGQRPSGPS 44
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.6 bits (83), Expect = 2e-04
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + + L H R HT EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.48
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C + L +H + H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKAFSQTSKLARHQRIHTGEKPSGPS 44
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 2e-04
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + + L H R HT EKP
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSHLTNHWRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.70
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EKPY C C F H L H + H K +
Sbjct: 3 SGSSGSGEKPYKCNECGKVFTQNSH--LTNHWRIHTGEKPSGPS 44
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 2e-04
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 4/41 (9%)
Query: 18 HKRL----KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP++C CG + + L H HT EKP
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSHLVRHRGIHTGEKPSGP 43
Score = 26.3 bits (59), Expect = 0.53
Identities = 13/44 (29%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T EKPY C C F H L +H H K +
Sbjct: 3 SGSSGTGEKPYKCNECGKVFTQNSH--LVRHRGIHTGEKPSGPS 44
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 35.2 bits (80), Expect = 2e-04
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 20 RLKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KP++CP C + + KA L +H+R+HT EK
Sbjct: 6 SGKPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 26.3 bits (57), Expect = 0.52
Identities = 9/28 (32%), Positives = 15/28 (53%)
Query: 47 TREKPYACPTCEFKTGDHNVLRKHVQRH 74
+ KPY CP C + + L H+++H
Sbjct: 5 SSGKPYKCPQCSYASAIKANLNVHLRKH 32
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 35.2 bits (82), Expect = 2e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
KP++C CG + A L+ HV HT P +
Sbjct: 10 KPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 28.3 bits (64), Expect = 0.096
Identities = 14/35 (40%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRH 74
EKPY C TC F H LR HV H
Sbjct: 2 SSGSSGGEKPYKCETCGARFVQVAH--LRAHVLIH 34
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 35.0 bits (81), Expect = 3e-04
Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 42 HVRQHTREKPYACPTCE--FKTGDHNVLRKHVQRHMPV 77
R T KP+ CP C+ F DH L H +RHM V
Sbjct: 2 STRGSTGIKPFQCPDCDRSFSRSDH--LALHRKRHMLV 37
Score = 26.9 bits (60), Expect = 0.25
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQH 46
KPFQCP C + R L LH ++H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: k.12.1.1
Length = 46
Score = 34.8 bits (81), Expect = 4e-04
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
+P +C CG + + A L H R HT EKP
Sbjct: 11 RPHKCNECGKSFIQSAHLIQHQRIHTGEKPSGP 43
Score = 25.9 bits (58), Expect = 0.69
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 42 HVRQHTREKPYACPTC--EFKTGDHNVLRKHVQRHMPVKKYQCT 83
T E+P+ C C F H L +H + H K +
Sbjct: 3 SGSSGTGERPHKCNECGKSFIQSAH--LIQHQRIHTGEKPSGPS 44
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 34.5 bits (80), Expect = 4e-04
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 15 REVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
K C CG + L++H R H EK
Sbjct: 4 GSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGP 43
Score = 25.6 bits (57), Expect = 0.89
Identities = 10/42 (23%), Positives = 15/42 (35%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCT 83
+ EK + C C + LR H + HM K +
Sbjct: 3 SGSSGSGEKSHTCDECGKNFCYISALRIHQRVHMGEKCSGPS 44
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 34.5 bits (79), Expect = 4e-04
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
+ K C +CG L H H+ EKPY+
Sbjct: 7 GRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSSGPS 46
Score = 25.7 bits (56), Expect = 1.1
Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 4/45 (8%)
Query: 44 RQHTREKPYACPTCE--FKTGDHNVLRKHVQRHMPVKKYQCTFCS 86
K AC C F+ H L +H H K Y S
Sbjct: 5 SSGRTRKQVACEICGKIFRDVYH--LNRHKLSHSGEKPYSSGPSS 47
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 35.3 bits (80), Expect = 8e-04
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 3/83 (3%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQ 81
+ +QC +C H R CP C + + ++H + KK
Sbjct: 15 EVYQCRLCNAKLSSLLEQGSHERLCRNA--AVCPYCSLRFFSPELKQEH-ESKCEYKKLT 71
Query: 82 CTFCSYSCTERFRLKDHTLAKHN 104
C C + F + H + HN
Sbjct: 72 CLECMRTFKSSFSIWRHQVEVHN 94
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 33.7 bits (78), Expect = 0.001
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQ-HTREKPYACPT 56
KP++C CG + +L H R HT EKP +
Sbjct: 11 KPYECIECGKAFIQNTSLIRHWRYYHTGEKPSGPSS 46
Score = 26.4 bits (59), Expect = 0.52
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 3/44 (6%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQR--HMPVKKYQCT 83
T +KPY C C + L +H R H K +
Sbjct: 3 SGSSGTGKKPYECIECGKAFIQNTSLIRH-WRYYHTGEKPSGPS 45
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 35.3 bits (80), Expect = 0.001
Identities = 14/57 (24%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH 74
K + F CP+C +L+ H+R E CP C+ + + HV +
Sbjct: 69 SKAISQFVCPLCLMPFSSSVSLKQHIRYT--EHTKVCPVCKKEFTSTDSALDHVCKK 123
Score = 32.2 bits (72), Expect = 0.013
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 2/64 (3%)
Query: 41 LHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTL 100
+ + CP C L++H++ C C T DH
Sbjct: 64 YRLLASKAISQFVCPLCLMPFSSSVSLKQHIRYTE--HTKVCPVCKKEFTSTDSALDHVC 121
Query: 101 AKHN 104
KHN
Sbjct: 122 KKHN 125
Score = 25.7 bits (55), Expect = 3.1
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQH 46
LK+HIR CPVC + HV +
Sbjct: 90 LKQHIRYTEH---TKVCPVCKKEFTSTDSALDHVCKK 123
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 34.2 bits (78), Expect = 0.001
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 8/59 (13%)
Query: 4 YADIKCLKKHIREVHKRLKPFQ--------CPVCGFTTGRKATLQLHVRQHTREKPYAC 54
++ + L H+ H CP G + K L H+R HT EK
Sbjct: 35 FSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKSGPS 93
Score = 29.9 bits (67), Expect = 0.057
Identities = 13/78 (16%), Positives = 18/78 (23%), Gaps = 13/78 (16%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQ-HTREKPYACPTCE----------FKTGDHN 65
+ + C T L HV H C FK
Sbjct: 19 IDEAQLSRPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYK- 77
Query: 66 VLRKHVQRHMPVKKYQCT 83
L H++ H K +
Sbjct: 78 -LVNHIRVHTGEKSGPSS 94
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.9 bits (79), Expect = 0.002
Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 7/33 (21%)
Query: 11 KKHIREVHKRLKPF---QCPVCGFTTGRKATLQ 40
K+ ++++ LK + P KAT++
Sbjct: 19 KQALKKLQASLKLYADDSAPALAI----KATME 47
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 32.3 bits (74), Expect = 0.002
Identities = 9/33 (27%), Positives = 13/33 (39%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
KP+ C C T L H + HT + +
Sbjct: 9 KPYSCAECKETFSDNNRLVQHQKMHTVKSGPSS 41
Score = 25.4 bits (56), Expect = 1.3
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 46 HTREKPYACPTCEFKTGDHNVLRKHVQRH 74
+ EKPY+C C+ D+N L +H + H
Sbjct: 5 SSGEKPYSCAECKETFSDNNRLVQHQKMH 33
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 31.4 bits (72), Expect = 0.006
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 12 KHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYAC 54
K + C CG R L H + HTR+ +
Sbjct: 2 SSGS-SGTDSKSYNCNECGKAFTRIFHLTRHQKIHTRKSGPSS 43
Score = 25.6 bits (57), Expect = 0.86
Identities = 5/16 (31%), Positives = 5/16 (31%)
Query: 42 HVRQHTREKPYACPTC 57
T K Y C C
Sbjct: 3 SGSSGTDSKSYNCNEC 18
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 29.6 bits (67), Expect = 0.021
Identities = 12/29 (41%), Positives = 15/29 (51%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
+ F C VC R+ L+ H R HT EK
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.5 bits (65), Expect = 0.034
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KPF+C +C + T K+ L+ H+ +H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 24.5 bits (52), Expect = 2.5
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 50 KPYACPTCEFKTGDHNVLRKHVQRH 74
KP+ C CE+ T + L+ H+ RH
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRH 32
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 29.1 bits (64), Expect = 0.054
Identities = 14/39 (35%), Positives = 18/39 (46%)
Query: 18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPT 56
KP+ CPVCG RK + HVR H + P+
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKSGPS 43
Score = 26.0 bits (56), Expect = 0.72
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 46 HTREKPYACPTCEFKTGDHNVLRKHVQRH 74
+ EKPY+CP C + + + HV+ H
Sbjct: 5 SSGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 29.2 bits (65), Expect = 0.070
Identities = 8/39 (20%), Positives = 13/39 (33%)
Query: 15 REVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYA 53
R R K C C + ++A L + +K
Sbjct: 31 RSTLSRRKTPMCEKCRKDSCQEAALNKDEGNESGKKTSG 69
Score = 28.1 bits (62), Expect = 0.18
Identities = 14/71 (19%), Positives = 22/71 (30%), Gaps = 8/71 (11%)
Query: 10 LKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRK 69
K + +H + +C CG R++T +R K C C + L K
Sbjct: 6 SGKRQK-IHLGDRSQKCSKCGIIFIRRST-------LSRRKTPMCEKCRKDSCQEAALNK 57
Query: 70 HVQRHMPVKKY 80
K
Sbjct: 58 DEGNESGKKTS 68
Score = 25.8 bits (56), Expect = 1.3
Identities = 8/65 (12%), Positives = 15/65 (23%), Gaps = 7/65 (10%)
Query: 34 GRKATLQLHVRQHTREKPYACPTCEFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERF 93
G + + H ++ C C ++ K C C +
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCSKC-------GIIFIRRSTLSRRKTPMCEKCRKDSCQEA 53
Query: 94 RLKDH 98
L
Sbjct: 54 ALNKD 58
>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 98
Score = 29.9 bits (66), Expect = 0.078
Identities = 13/45 (28%), Positives = 16/45 (35%)
Query: 7 IKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
+ LKKH+ K +C C KA L H KP
Sbjct: 38 LVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMAEHSAKP 82
Score = 28.0 bits (61), Expect = 0.34
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 44 RQHTREKPYACPTCEFKTGDHNV-LRKHVQR-HMPVKKYQCTFCSYSCTERFRLKDHTLA 101
R CPTC T V L+KH++ +C C + L HT+A
Sbjct: 17 RAIHERGEAVCPTCNVVTRKTLVGLKKHMEVCQKLQDALKCQHCRKQFKSKAGLNYHTMA 76
Query: 102 KHN 104
+H+
Sbjct: 77 EHS 79
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, transcription; NMR {Homo sapiens}
Length = 29
Score = 28.2 bits (62), Expect = 0.088
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREK 50
KP QC +CG + ++L HVRQHT EK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 30.2 bits (67), Expect = 0.10
Identities = 8/34 (23%), Positives = 9/34 (26%)
Query: 17 VHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
+QC VC L HV H
Sbjct: 174 TASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHG 207
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 27.5 bits (61), Expect = 0.18
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
PF+C C ++ L H R H R+
Sbjct: 11 NPFKCSKCDRVFTQRNYLVQHERTHARKSG 40
Score = 24.0 bits (52), Expect = 4.4
Identities = 8/33 (24%), Positives = 12/33 (36%)
Query: 42 HVRQHTREKPYACPTCEFKTGDHNVLRKHVQRH 74
E P+ C C+ N L +H + H
Sbjct: 3 SGSSGAGENPFKCSKCDRVFTQRNYLVQHERTH 35
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 26.8 bits (60), Expect = 0.23
Identities = 14/31 (45%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREK 50
+PF C CG R LQ H R HT EK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron
transfer, DIIR center, oxidoreductase; 1.40A
{Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1
PDB: 1yv1_A 1yux_A
Length = 202
Score = 27.8 bits (61), Expect = 0.59
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 13/34 (38%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
CP+CG+ H E CP C
Sbjct: 172 HLCPICGYI-------------HKGEDFEKCPIC 192
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 25.6 bits (55), Expect = 0.88
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
K F C C K +LQ H+R HT EK
Sbjct: 7 GKIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 37
Score = 25.2 bits (54), Expect = 1.5
Identities = 7/27 (25%), Positives = 16/27 (59%)
Query: 50 KPYACPTCEFKTGDHNVLRKHVQRHMP 76
+ Y+CP CE + +++ H++ + P
Sbjct: 8 RSYSCPVCEKSFSEDRLIKSHIKTNHP 34
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 24.8 bits (53), Expect = 1.8
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 23 PFQCPVCGFTTGRKATLQLHVRQHT 47
P++CP+C A++Q H+R H+
Sbjct: 3 PYRCPLCRAGCPSLASMQAHMRGHS 27
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.2 bits (57), Expect = 2.1
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 9/42 (21%)
Query: 26 CPVCGFTTGRKATLQLHVRQHTR-EKPYACPTCEFKTGDHNV 66
CP C + V + + + C C D V
Sbjct: 24 CPECK---VYPPKI---VERFSEGD--VVCALCGLVLSDKLV 57
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc
finger, classical zinc finger, transcription; NMR {Homo
sapiens}
Length = 30
Score = 24.3 bits (52), Expect = 2.5
Identities = 13/30 (43%), Positives = 15/30 (50%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQHTREK 50
+KP+ C C LQ HVR HT EK
Sbjct: 1 MKPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic}
SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Length = 30
Score = 24.0 bits (51), Expect = 2.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 78 KKYQCTFCSYSCTERFRLKDHTLAKHN 104
K YQC +C + + LK H KH+
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHS 27
Score = 23.3 bits (49), Expect = 6.3
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 50 KPYACPTCEFKTGDHNVLRKHVQ 72
K Y C CEF++ D + L+ H++
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIK 23
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 23.9 bits (51), Expect = 3.2
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 22 KPFQCPVCGFTTGRKATLQLHVRQHT 47
+PF C +C KA H++ HT
Sbjct: 6 RPFVCRICLSAFTTKANCARHLKVHT 31
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress,
oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A
3pza_A 3qvd_A 1nnq_A 2hr5_A
Length = 170
Score = 25.8 bits (56), Expect = 3.3
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 13/34 (38%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTC 57
+ CP+CG+T E P CP C
Sbjct: 139 YICPICGYT-------------AVDEAPEYCPVC 159
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 24.8 bits (53), Expect = 4.1
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 3 FYADIKCLKKHIREVHKRLKPFQCPVCGFTTGRKATLQLHVRQHTREKP 51
I+ LKKH+ + F C CG A ++ HV + P
Sbjct: 44 GRKTIEGLKKHMENCKQE--MFTCHHCGKQLRSLAGMKYHVMANHNSLP 90
Score = 24.8 bits (53), Expect = 4.8
Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
Query: 44 RQHTREKPYACPTC-EFKTGDHNVLRKHVQRHMPVKKYQCTFCSYSCTERFRLKDHTLAK 102
+ + +CPTC L+KH++ + + C C +K H +A
Sbjct: 27 LEIVDKGSVSCPTCQAVGRKTIEGLKKHMENCKQ-EMFTCHHCGKQLRSLAGMKYHVMAN 85
Query: 103 HN 104
HN
Sbjct: 86 HN 87
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 24.5 bits (54), Expect = 4.3
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 9 CLKKHIREVHKRLKPFQCPVC 29
CL + ++ CPVC
Sbjct: 45 CLTANHKKSMLDKGESSCPVC 65
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 23.7 bits (51), Expect = 6.0
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 22 KPFQCPV--CGFTTGRKATLQLHVRQHTREK 50
K F+C C T R+ ++ H++ H ++
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A
{Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Length = 279
Score = 25.0 bits (55), Expect = 6.3
Identities = 6/35 (17%), Positives = 10/35 (28%), Gaps = 6/35 (17%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCE 58
F+C C + + +P C C
Sbjct: 135 FECRGCMRHH------AVTQSTNMITEPSLCSECG 163
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA
replication, MCM complex, AAA+ Pro ATP-binding,
DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Length = 595
Score = 24.9 bits (55), Expect = 6.8
Identities = 4/38 (10%), Positives = 9/38 (23%), Gaps = 1/38 (2%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCEFKT 61
++ + + + P CP C
Sbjct: 136 YKHIHPDCMQEFEWPEDEEMPEVLEM-PTICPKCGKPG 172
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 28
Score = 23.2 bits (49), Expect = 7.1
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 21 LKPFQCPVCGFTTGRKATLQLHVRQHT 47
++P+ C VCG K ++ H R HT
Sbjct: 1 MRPYSCSVCGKRFSLKHQMETHYRVHT 27
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans}
SCOP: g.41.5.1
Length = 87
Score = 24.0 bits (52), Expect = 7.6
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 68 RKHVQRHMPVKKYQCTFCSY 87
R Q K+ C C +
Sbjct: 24 RSDAQGGKAYLKWICITCGH 43
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 23.1 bits (50), Expect = 8.0
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 19 KRLKPFQCPV--CGFTTGRKATLQLHVRQHTREK 50
+ K C + CG G+ + L+ H+R HT E+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 23.9 bits (52), Expect = 8.3
Identities = 5/29 (17%), Positives = 7/29 (24%)
Query: 9 CLKKHIREVHKRLKPFQCPVCGFTTGRKA 37
C+ + CPVC
Sbjct: 45 CITLNYESNRNTDGKGNCPVCRVPYPFGN 73
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis
elegans} SCOP: c.66.1.17
Length = 314
Score = 24.6 bits (54), Expect = 8.5
Identities = 6/28 (21%), Positives = 11/28 (39%)
Query: 7 IKCLKKHIREVHKRLKPFQCPVCGFTTG 34
I L R++ + Q V + +G
Sbjct: 232 IAHLVAFNRKIFPAVTYAQSIVSTYPSG 259
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase,
hydrolase, zinc-finger, ATP-binding, DNA-BIND ssDNA
binding; 2.8A {Sulfolobus solfataricus}
Length = 268
Score = 24.6 bits (54), Expect = 9.1
Identities = 4/35 (11%), Positives = 9/35 (25%), Gaps = 1/35 (2%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPYACPTCE 58
++ + + + P CP C
Sbjct: 142 YKHIHPDCMQEFEWPEDEEMPEVLEM-PTICPKCG 175
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 22.8 bits (48), Expect = 9.1
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 49 EKPYACPTCEFKTGDHNVLRKHVQRH 74
EKP++C C ++ D + + KH++ H
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 23.2 bits (49), Expect = 9.1
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 18 HKRLKPFQCPVCGFTTGRKATLQLHVRQHTR 48
++ K F+C C T L H R HTR
Sbjct: 7 GQKEKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 24.3 bits (54), Expect = 9.8
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 24 FQCPVCGFTTGRKATLQLHVRQHTREKPY-ACPTC 57
CPVCG ++ + + PY ACP C
Sbjct: 250 LMCPVCGIGFP-----EITPKLFSFNSPYGACPNC 279
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.138 0.466
Gapped
Lambda K H
0.267 0.0776 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,697,682
Number of extensions: 85180
Number of successful extensions: 987
Number of sequences better than 10.0: 1
Number of HSP's gapped: 871
Number of HSP's successfully gapped: 425
Length of query: 110
Length of database: 6,701,793
Length adjustment: 74
Effective length of query: 36
Effective length of database: 4,635,639
Effective search space: 166883004
Effective search space used: 166883004
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)