BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10279
(80 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P59708|PM14_MOUSE Pre-mRNA branch site protein p14 OS=Mus musculus GN=Sf3b14 PE=2
SV=1
Length = 125
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/57 (80%), Positives = 53/57 (92%), Gaps = 1/57 (1%)
Query: 1 MAM-SQRRANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR 56
MAM + +RAN+RLPPEVNR+LYIRNLPYKIT +EMYDIFGKYG IRQIR+GNTP+TR
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR 57
>sp|Q9Y3B4|PM14_HUMAN Pre-mRNA branch site protein p14 OS=Homo sapiens GN=SF3B14 PE=1
SV=1
Length = 125
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 46/57 (80%), Positives = 53/57 (92%), Gaps = 1/57 (1%)
Query: 1 MAM-SQRRANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR 56
MAM + +RAN+RLPPEVNR+LYIRNLPYKIT +EMYDIFGKYG IRQIR+GNTP+TR
Sbjct: 1 MAMQAAKRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETR 57
>sp|Q9VRV7|PM14_DROME Pre-mRNA branch site p14-like protein OS=Drosophila melanogaster
GN=CG13298 PE=2 SV=1
Length = 121
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 41/52 (78%), Positives = 49/52 (94%)
Query: 5 QRRANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR 56
+R ++RLPPEVNR+LY+RNLPYKIT DEMYDIFGK+GAIRQIR+GNTP+TR
Sbjct: 2 NKRNHIRLPPEVNRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETR 53
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 50/57 (87%), Gaps = 1/57 (1%)
Query: 1 MAMSQRRA-NVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR 56
MAM+ R+ +LPPEVNR+LYI+NLPYKIT +EMY+IFGK+GA+RQIR+GNT +TR
Sbjct: 1 MAMANRQNRGAKLPPEVNRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETR 57
>sp|Q9FMP4|PM14_ARATH Pre-mRNA branch site p14-like protein OS=Arabidopsis thaliana
GN=At5g12190 PE=2 SV=1
Length = 124
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/55 (70%), Positives = 46/55 (83%)
Query: 2 AMSQRRANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR 56
+S R++N RLPPEVNRVLY+RNLP+ IT +EMYDIFGKYGAIRQIRIG T+
Sbjct: 3 TISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATK 57
>sp|O59670|PM14_SCHPO Pre-mRNA branch site p14-like protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3
SV=2
Length = 115
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/50 (58%), Positives = 39/50 (78%), Gaps = 5/50 (10%)
Query: 12 LPP-----EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR 56
+PP EVN +L+I+NL +KIT +EMYD+FG+YG +RQIR+GNT TR
Sbjct: 1 MPPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTR 50
>sp|Q499V6|ZCRB1_RAT Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Rattus norvegicus GN=Zcrb1 PE=2 SV=1
Length = 217
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKSLVMKCMIF 69
+Y+ NLP+ +T +++Y IF KYG + ++ I DTR +L K + C
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRA 70
Query: 70 LVNMEL 75
+ N +L
Sbjct: 71 INNKQL 76
>sp|Q9CZ96|ZCRB1_MOUSE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Mus musculus GN=Zcrb1 PE=1 SV=1
Length = 217
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKSLVMKCMIF 69
+Y+ NLP+ +T +++Y IF KYG + ++ I DTR +L K + C
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSALNCTRA 70
Query: 70 LVNMEL 75
+ N +L
Sbjct: 71 INNKQL 76
>sp|Q8TBF4|ZCRB1_HUMAN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Homo sapiens GN=ZCRB1 PE=1 SV=2
Length = 217
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKSLVMKCMIF 69
+Y+ NLP+ +T +++Y IF KYG + ++ I DTR +L K C
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRA 70
Query: 70 LVNMEL 75
+ N +L
Sbjct: 71 INNKQL 76
>sp|Q56JZ7|ZCRB1_BOVIN Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Bos taurus GN=ZCRB1 PE=2 SV=1
Length = 217
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKSLVMKCMIF 69
+Y+ NLP+ +T +++Y IF KYG + ++ I DTR +L K C
Sbjct: 11 TVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRRSKGVAFILFLDKDSAQNCTRA 70
Query: 70 LVNMEL 75
+ N +L
Sbjct: 71 INNKQL 76
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 9/66 (13%)
Query: 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKSLVMKCMIF 69
+Y+ NLP+ +T ++++ IF KYG + ++ I D+R +L K C+
Sbjct: 11 TVYVSNLPFSLTNNDLHRIFSKYGKVVKVTILKDKDSRKSKGVSFVLFLDKESAQNCVRG 70
Query: 70 LVNMEL 75
L N +L
Sbjct: 71 LNNKQL 76
>sp|O17310|SXL_MUSDO Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1
Length = 324
Score = 37.7 bits (86), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
LY+ NLP IT DE+ IFGKYG I Q I
Sbjct: 190 LYVTNLPRTITDDELEKIFGKYGNIVQKNI 219
>sp|Q4PC17|MRD1_USTMA Multiple RNA-binding domain-containing protein 1 OS=Ustilago maydis
(strain 521 / FGSC 9021) GN=MRD1 PE=3 SV=1
Length = 858
Score = 37.4 bits (85), Expect = 0.025, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
L+IRNLP+ +GDE+ F +G ++Q+ I
Sbjct: 316 LFIRNLPFAASGDEILAFFESFGTVKQVHI 345
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 9/36 (25%), Positives = 23/36 (63%)
Query: 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
P + + ++N+PY + +E+ +FG++G + ++ I
Sbjct: 497 PRSDTTILVKNIPYGTSAEEVEKLFGEHGEVDKVLI 532
>sp|O97018|SXL_CHRRU Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2
Length = 307
Score = 37.4 bits (85), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
LY+ NLP IT DE+ IFGKYG I Q I
Sbjct: 173 LYVTNLPRTITDDELEKIFGKYGNIVQKNI 202
>sp|Q24668|SXL_DROSU Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2
Length = 354
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
LY+ NLP IT D++ IFGKYG+I Q I
Sbjct: 215 LYVTNLPRTITDDQLDTIFGKYGSIVQKNI 244
>sp|P19339|SXL_DROME Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1
Length = 354
Score = 36.6 bits (83), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
LY+ NLP IT D++ IFGKYG+I Q I
Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNI 242
>sp|O13620|MRD1_SCHPO Multiple RNA-binding domain-containing protein 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=mrd1 PE=3 SV=1
Length = 833
Score = 36.2 bits (82), Expect = 0.058, Method: Composition-based stats.
Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 3 MSQRRANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
+S++ N++L E R L++RNL Y D++ +FG +G + Q+ +
Sbjct: 309 VSEQERNIQLISETKR-LFLRNLTYSCAEDDLKSLFGPFGQLEQVHM 354
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Query: 2 AMSQRRANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
A ++ R P+ ++L I+NLP++ T ++ + G YG +R +R+
Sbjct: 706 AAAEVRKQDSSKPKGTKIL-IKNLPFEATKKDVQSLLGAYGQLRSVRV 752
>sp|Q9SJG8|AML2_ARATH Protein MEI2-like 2 OS=Arabidopsis thaliana GN=ML2 PE=2 SV=2
Length = 843
Score = 35.8 bits (81), Expect = 0.081, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
L I N+ ++ DE+ +FG YG IR+IR TP+ R+
Sbjct: 285 LVIFNVDTTVSNDELLQLFGAYGEIREIR--ETPNRRF 320
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 19/25 (76%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAI 44
+Y++NLP +IT DE+ FGKYG I
Sbjct: 241 VYVKNLPKEITDDELKKTFGKYGDI 265
>sp|Q9NW13|RBM28_HUMAN RNA-binding protein 28 OS=Homo sapiens GN=RBM28 PE=1 SV=3
Length = 759
Score = 35.4 bits (80), Expect = 0.12, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR 56
L IRNL +K + D++ +F ++GA+ ++ I PD +
Sbjct: 116 LIIRNLSFKCSEDDLKTVFAQFGAVLEVNIPRKPDGK 152
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 18/69 (26%), Positives = 39/69 (56%), Gaps = 11/69 (15%)
Query: 11 RLPPEVN--RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDT---------RYLT 59
+LP +VN + ++IRNL + +E+ ++ ++G ++ +RI PDT +++T
Sbjct: 326 KLPSDVNEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMT 385
Query: 60 KSLVMKCMI 68
+ KC++
Sbjct: 386 QEAAQKCLL 394
>sp|O61374|SXL_CERCA Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2
Length = 348
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
LY+ NLP IT D++ IFGKYG I Q I
Sbjct: 198 LYVTNLPRTITDDQLDTIFGKYGMIVQKNI 227
>sp|Q08473|SQD_DROME RNA-binding protein squid OS=Drosophila melanogaster GN=sqd PE=1
SV=3
Length = 344
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDT 55
+R L++ L ++ T E+ D FGKYG I I + P T
Sbjct: 55 DRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQT 93
>sp|P27476|NSR1_YEAST Nuclear localization sequence-binding protein OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NSR1 PE=1
SV=1
Length = 414
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDT 55
P E + L++ NL + D ++++F K+G + +RI P+T
Sbjct: 262 PSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPET 304
>sp|O43120|UAP2_SCHPO Splicing factor U2AF-associated protein 2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=uap2 PE=1 SV=1
Length = 367
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP 53
P +N+ +YI+ LP +T DE+ ++F K G I + TP
Sbjct: 106 PVINKAVYIQGLPLDVTVDEIEEVFKKCGVIAKNIDNGTP 145
>sp|P15771|NUCL_CHICK Nucleolin OS=Gallus gallus GN=NCL PE=1 SV=1
Length = 694
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 18 RVLYIRNLPYKITGDEMYDIF 38
R L+++NLPY++T DEM ++F
Sbjct: 371 RTLFVKNLPYRVTEDEMKNVF 391
>sp|Q4WJT7|MRD1_ASPFU Multiple RNA-binding domain-containing protein 1 OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=mrd1 PE=3 SV=1
Length = 825
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLT 59
L++RNLPY + ++ +F K+G I +I + DTR T
Sbjct: 303 LFVRNLPYDASESDLEPVFSKFGKIEEIHVAF--DTRSTT 340
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
+ I+NLP++ T ++ +FG YG +R +R+
Sbjct: 704 IIIKNLPFQATKKDVRSLFGAYGQLRSVRV 733
Score = 30.8 bits (68), Expect = 2.8, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVM 64
P V L+++NL + T + ++F RI PD + K+L M
Sbjct: 593 PVVTSTLFVKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSM 643
>sp|O01159|RSP7_CAEEL Probable splicing factor, arginine/serine-rich 7 OS=Caenorhabditis
elegans GN=rsp-7 PE=3 SV=3
Length = 452
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 15 EVNRVLYIRNLPYKITGDEMYDIFGKY-GAIRQIRIGNTPD 54
E+ R +Y+ NLP + G+E+ ++F Y G + R+ + PD
Sbjct: 160 EIRRTVYVGNLPKGVDGNEVLELFNMYFGEVMYARMASGPD 200
>sp|Q5BGA9|MRD1_EMENI Multiple RNA-binding domain-containing protein 1 OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=mrd1 PE=3 SV=1
Length = 819
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 21/30 (70%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
+ I+NLP++ T ++ +FG YG +R +R+
Sbjct: 699 IIIKNLPFQATKKDVRSLFGAYGQLRSVRV 728
>sp|Q5ZML3|SRSF1_CHICK Serine/arginine-rich splicing factor 1 OS=Gallus gallus GN=SRSF1
PE=1 SV=3
Length = 257
Score = 33.9 bits (76), Expect = 0.34, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN 51
+Y+ NLP I ++ D+F KYGAIR I + N
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 49
>sp|Q5R7H2|SRSF1_PONAB Serine/arginine-rich splicing factor 1 OS=Pongo abelii GN=SRSF1
PE=2 SV=3
Length = 248
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN 51
+Y+ NLP I ++ D+F KYGAIR I + N
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 49
>sp|Q3YLA6|SRSF1_PIG Serine/arginine-rich splicing factor 1 OS=Sus scrofa GN=SRSF1
PE=2 SV=3
Length = 248
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN 51
+Y+ NLP I ++ D+F KYGAIR I + N
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 49
>sp|Q6PDM2|SRSF1_MOUSE Serine/arginine-rich splicing factor 1 OS=Mus musculus GN=Srsf1
PE=1 SV=3
Length = 248
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN 51
+Y+ NLP I ++ D+F KYGAIR I + N
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 49
>sp|Q07955|SRSF1_HUMAN Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1
PE=1 SV=2
Length = 248
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN 51
+Y+ NLP I ++ D+F KYGAIR I + N
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 49
>sp|Q0VCY7|SRSF1_BOVIN Serine/arginine-rich splicing factor 1 OS=Bos taurus GN=SRSF1
PE=2 SV=1
Length = 248
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN 51
+Y+ NLP I ++ D+F KYGAIR I + N
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 49
>sp|Q54PB2|MRD1_DICDI Multiple RNA-binding domain-containing protein 1 OS=Dictyostelium
discoideum GN=mrd1 PE=3 SV=1
Length = 895
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 7 RANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD 54
++N P + + + I+NLP++ T E+ +F YG I+ +RI P+
Sbjct: 784 KSNGGQPNKPSSKIIIKNLPFESTIKEIRKLFTAYGEIQSVRIPKKPN 831
Score = 32.3 bits (72), Expect = 0.93, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 22/31 (70%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQI 47
N VL ++N+P+K E++++F K+G + ++
Sbjct: 552 NTVLLVKNIPFKTQEHELHELFSKFGELSRV 582
Score = 29.3 bits (64), Expect = 7.2, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
+++RNL Y +++ +F K+G I +I I
Sbjct: 363 IFVRNLSYSTKEEDLEKVFSKFGKISEIHI 392
>sp|Q6DII2|SRSF1_XENTR Serine/arginine-rich splicing factor 1 OS=Xenopus tropicalis
GN=srsf1 PE=2 SV=1
Length = 267
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN 51
+Y+ NLP I ++ D+F KYGAIR I + N
Sbjct: 18 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKN 49
>sp|Q8CGC6|RBM28_MOUSE RNA-binding protein 28 OS=Mus musculus GN=Rbm28 PE=1 SV=4
Length = 750
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 22/37 (59%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR 56
L IRNL +K + D++ +F YG + ++ I PD +
Sbjct: 116 LIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDGK 152
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/68 (22%), Positives = 36/68 (52%), Gaps = 11/68 (16%)
Query: 11 RLPPEVN--RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDT---------RYLT 59
+LP +V + ++IRNL + + + ++ ++G ++ +R+ PDT +++T
Sbjct: 316 KLPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMT 375
Query: 60 KSLVMKCM 67
+ KC+
Sbjct: 376 QEAAQKCL 383
>sp|Q6NYA0|SRS1B_DANRE Serine/arginine-rich splicing factor 1B OS=Danio rerio GN=srsf1b
PE=2 SV=1
Length = 245
Score = 33.5 bits (75), Expect = 0.42, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN 51
+Y+ NLP I ++ D+F KYGAIR I + N
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKN 48
>sp|Q7SXP4|SRS1A_DANRE Serine/arginine-rich splicing factor 1A OS=Danio rerio GN=srsf1a
PE=2 SV=2
Length = 257
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN 51
+Y+ NLP I ++ D+F KYGAIR I + N
Sbjct: 17 IYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKN 48
>sp|Q9LYN7|AML4_ARATH Protein MEI2-like 4 OS=Arabidopsis thaliana GN=ML4 PE=1 SV=1
Length = 907
Score = 33.1 bits (74), Expect = 0.51, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIR 48
L++ NL I+ +E++ IF YG IR++R
Sbjct: 297 LWVNNLDSSISNEELHGIFSSYGEIREVR 325
>sp|Q5RF26|NUCL_PONAB Nucleolin OS=Pongo abelii GN=NCL PE=2 SV=3
Length = 712
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQI 47
R L +NLPYK+T DE+ ++F IR +
Sbjct: 395 RTLLAKNLPYKVTQDELKEVFEDAAEIRLV 424
>sp|Q4R4J7|NUCL_MACFA Nucleolin OS=Macaca fascicularis GN=NCL PE=2 SV=3
Length = 711
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQI 47
R L +NLPYK+T DE+ ++F IR +
Sbjct: 394 RTLLAKNLPYKVTQDELKEVFEDAAEIRLV 423
>sp|P19338|NUCL_HUMAN Nucleolin OS=Homo sapiens GN=NCL PE=1 SV=3
Length = 710
Score = 33.1 bits (74), Expect = 0.52, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQI 47
R L +NLPYK+T DE+ ++F IR +
Sbjct: 393 RTLLAKNLPYKVTQDELKEVFEDAAEIRLV 422
>sp|Q9Y4C8|RBM19_HUMAN Probable RNA-binding protein 19 OS=Homo sapiens GN=RBM19 PE=1 SV=3
Length = 960
Score = 32.7 bits (73), Expect = 0.62, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQI 47
L++RNLPY T +++ +F KYG + ++
Sbjct: 404 LFVRNLPYTSTEEDLEKLFSKYGPLSEL 431
>sp|O22315|SRSF1_ARATH Pre-mRNA-splicing factor SF2 OS=Arabidopsis thaliana GN=SF2 PE=1
SV=1
Length = 303
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP 53
+R +Y+ NLP I E+ D+F KYG + QI + P
Sbjct: 6 SRTVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPP 42
>sp|Q8SR30|PABP_ENCCU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Encephalitozoon cuniculi (strain GB-M1) GN=PAB1 PE=1
SV=1
Length = 502
Score = 32.7 bits (73), Expect = 0.67, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNT 52
PPE + +++NLP TG ++ D F +G I ++ T
Sbjct: 92 PPETGNI-FVKNLPEDFTGKDLDDAFSMFGEIVSCKVATT 130
>sp|Q5SP50|ZCRB1_DANRE Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Danio rerio GN=zcrb1 PE=2 SV=1
Length = 218
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 9/66 (13%)
Query: 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKSLVMKCMIF 69
+Y+ N+P+ +T +M+ + KYG + ++ I TR +L + C
Sbjct: 11 TVYVSNIPFSLTNSDMHKLCSKYGKVVKVTIVKDKHTRMSKGVAFVLFLDRESAYNCSRS 70
Query: 70 LVNMEL 75
L N +L
Sbjct: 71 LNNKQL 76
>sp|Q6BHZ2|UBA4_DEBHA Adenylyltransferase and sulfurtransferase UBA4 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=UBA4 PE=3 SV=1
Length = 448
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 4 SQRRANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLV 63
S +R +L P V + P++++ D +DI KY I + +TP TRYL +
Sbjct: 136 SAKRYINKLNPHVK----VNTYPFRLSNDNAFDIIEKYDLI--LDCTDTPATRYLINDVS 189
Query: 64 MKC 66
+ C
Sbjct: 190 VIC 192
>sp|P39684|PES4_YEAST Protein PES4 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=PES4 PE=4 SV=2
Length = 611
Score = 32.3 bits (72), Expect = 0.80, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYL 58
++I+NLP T D++ + F + G I+ I + N +YL
Sbjct: 305 IFIKNLPTITTRDDILNFFSEVGPIKSIYLSNATKVKYL 343
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 32.3 bits (72), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAI 44
+Y++NLP +I DE+ FGK+G I
Sbjct: 231 VYVKNLPKEIGEDELRKTFGKFGVI 255
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.141 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,248,371
Number of Sequences: 539616
Number of extensions: 863501
Number of successful extensions: 3228
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3022
Number of HSP's gapped (non-prelim): 232
length of query: 80
length of database: 191,569,459
effective HSP length: 51
effective length of query: 29
effective length of database: 164,049,043
effective search space: 4757422247
effective search space used: 4757422247
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.8 bits)