Query psy10279
Match_columns 80
No_of_seqs 164 out of 1084
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 22:23:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10279.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10279hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0114|consensus 99.8 7.6E-20 1.6E-24 105.1 6.8 69 1-69 1-70 (124)
2 PLN03134 glycine-rich RNA-bind 99.6 3E-15 6.5E-20 90.8 7.0 58 15-72 32-92 (144)
3 PLN03120 nucleic acid binding 99.6 1.1E-14 2.4E-19 95.1 6.8 53 17-69 4-56 (260)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 1.3E-14 2.7E-19 97.3 6.9 54 16-69 2-58 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.6 2.3E-14 4.9E-19 96.0 7.8 55 17-71 269-326 (352)
6 PF00076 RRM_1: RNA recognitio 99.5 1E-14 2.2E-19 77.2 4.7 50 20-69 1-52 (70)
7 TIGR01659 sex-lethal sex-letha 99.5 5E-14 1.1E-18 95.6 8.2 60 13-72 103-165 (346)
8 KOG0125|consensus 99.5 2.6E-14 5.7E-19 95.5 6.0 59 14-79 93-152 (376)
9 KOG0149|consensus 99.5 2.8E-14 6.1E-19 91.7 5.6 57 16-72 11-70 (247)
10 PLN03121 nucleic acid binding 99.5 6E-14 1.3E-18 90.8 7.0 54 16-69 4-57 (243)
11 KOG0107|consensus 99.5 5E-14 1.1E-18 87.4 5.0 46 17-64 10-55 (195)
12 KOG0121|consensus 99.5 7.5E-14 1.6E-18 83.1 4.8 48 16-63 35-85 (153)
13 TIGR01648 hnRNP-R-Q heterogene 99.4 2.9E-13 6.4E-18 96.7 7.1 59 13-71 54-114 (578)
14 KOG0105|consensus 99.4 2.1E-13 4.6E-18 85.6 5.5 51 15-65 4-54 (241)
15 KOG0113|consensus 99.4 2.4E-13 5.1E-18 90.0 5.7 67 12-78 96-165 (335)
16 PF14259 RRM_6: RNA recognitio 99.4 3.8E-13 8.3E-18 71.7 5.0 48 20-67 1-50 (70)
17 TIGR01622 SF-CC1 splicing fact 99.4 1.1E-12 2.4E-17 90.7 7.5 54 16-69 88-144 (457)
18 KOG0144|consensus 99.4 5.4E-13 1.2E-17 91.9 5.5 57 11-67 28-87 (510)
19 TIGR01659 sex-lethal sex-letha 99.4 9.8E-13 2.1E-17 89.3 6.6 56 16-71 192-250 (346)
20 TIGR01645 half-pint poly-U bin 99.4 1.1E-12 2.4E-17 94.1 6.5 55 16-70 106-163 (612)
21 TIGR01628 PABP-1234 polyadenyl 99.4 1.5E-12 3.3E-17 92.2 6.4 48 19-66 2-52 (562)
22 KOG0126|consensus 99.4 2E-13 4.4E-18 85.3 1.7 58 15-72 33-93 (219)
23 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.3 2.8E-12 6.2E-17 89.9 6.3 53 16-71 1-53 (481)
24 TIGR01645 half-pint poly-U bin 99.3 3.5E-12 7.6E-17 91.6 6.7 55 16-70 203-260 (612)
25 KOG0122|consensus 99.3 2.5E-12 5.4E-17 83.3 5.3 54 16-69 188-244 (270)
26 TIGR01642 U2AF_lg U2 snRNP aux 99.3 7.1E-12 1.5E-16 87.6 7.5 54 16-69 294-350 (509)
27 KOG0117|consensus 99.3 3.8E-12 8.2E-17 87.9 5.9 58 14-78 80-140 (506)
28 smart00362 RRM_2 RNA recogniti 99.3 1.6E-11 3.4E-16 64.0 6.0 50 19-68 1-51 (72)
29 KOG0148|consensus 99.3 8.2E-12 1.8E-16 82.1 5.8 58 14-74 161-218 (321)
30 COG0724 RNA-binding proteins ( 99.3 1.4E-11 3E-16 77.7 6.3 54 17-70 115-171 (306)
31 TIGR01628 PABP-1234 polyadenyl 99.3 1.4E-11 3.1E-16 87.3 6.9 55 15-69 283-339 (562)
32 TIGR01622 SF-CC1 splicing fact 99.3 1.4E-11 3.1E-16 85.2 6.6 56 17-72 186-244 (457)
33 PLN03213 repressor of silencin 99.3 1.7E-11 3.6E-16 86.2 6.5 50 15-65 8-57 (759)
34 KOG0144|consensus 99.2 1.9E-12 4.2E-17 89.2 1.5 64 17-80 124-192 (510)
35 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.2 2.5E-11 5.3E-16 85.2 7.0 53 16-70 274-327 (481)
36 KOG0131|consensus 99.2 1.9E-11 4.2E-16 76.4 5.0 56 13-68 5-63 (203)
37 KOG0127|consensus 99.2 6.6E-11 1.4E-15 83.7 6.6 56 14-69 289-347 (678)
38 KOG4207|consensus 99.2 4.6E-11 9.9E-16 76.2 5.1 54 18-78 14-70 (256)
39 cd00590 RRM RRM (RNA recogniti 99.1 2.8E-10 6.1E-15 59.4 5.9 51 19-69 1-53 (74)
40 KOG0108|consensus 99.1 1.6E-10 3.5E-15 80.4 6.0 52 18-69 19-73 (435)
41 smart00360 RRM RNA recognition 99.1 2.1E-10 4.6E-15 59.3 4.9 48 22-69 1-51 (71)
42 TIGR01648 hnRNP-R-Q heterogene 99.1 3.2E-10 7E-15 81.3 6.9 52 17-73 233-286 (578)
43 KOG0130|consensus 99.1 2E-10 4.4E-15 69.1 3.8 55 16-70 71-128 (170)
44 KOG0148|consensus 99.0 4.4E-10 9.6E-15 74.0 5.2 54 18-78 63-119 (321)
45 KOG0117|consensus 99.0 2.6E-10 5.7E-15 79.0 3.8 57 18-79 260-316 (506)
46 TIGR01642 U2AF_lg U2 snRNP aux 99.0 1.3E-09 2.8E-14 76.3 7.4 51 16-69 174-236 (509)
47 KOG0111|consensus 99.0 1.6E-10 3.4E-15 74.5 2.5 64 13-76 6-75 (298)
48 KOG0145|consensus 99.0 5.5E-10 1.2E-14 73.5 4.9 57 16-79 40-99 (360)
49 KOG0127|consensus 99.0 8.7E-10 1.9E-14 78.1 6.1 47 17-63 117-165 (678)
50 KOG4212|consensus 99.0 1.4E-09 3E-14 75.7 6.0 65 15-79 42-109 (608)
51 KOG0147|consensus 99.0 3.5E-10 7.5E-15 79.7 2.7 54 18-78 279-335 (549)
52 KOG0109|consensus 98.9 7.3E-10 1.6E-14 73.6 3.3 43 18-65 3-45 (346)
53 KOG0145|consensus 98.9 6.4E-09 1.4E-13 68.6 6.9 52 16-67 277-331 (360)
54 KOG4206|consensus 98.9 7E-09 1.5E-13 66.5 6.2 56 16-71 8-67 (221)
55 KOG0123|consensus 98.9 2.9E-09 6.2E-14 73.1 4.6 50 19-69 78-128 (369)
56 KOG4205|consensus 98.9 5E-09 1.1E-13 70.4 5.4 54 16-69 5-61 (311)
57 KOG0124|consensus 98.8 2.7E-09 5.9E-14 73.0 2.5 57 18-74 114-173 (544)
58 KOG0415|consensus 98.8 5.8E-09 1.3E-13 71.1 3.8 50 16-65 238-290 (479)
59 KOG0146|consensus 98.7 2E-08 4.4E-13 66.5 4.3 50 16-65 18-69 (371)
60 KOG0110|consensus 98.7 1.5E-08 3.3E-13 73.3 4.0 49 15-63 611-662 (725)
61 PF13893 RRM_5: RNA recognitio 98.7 5.2E-08 1.1E-12 49.8 4.2 36 34-78 1-36 (56)
62 KOG0132|consensus 98.7 3.4E-08 7.4E-13 72.3 4.6 44 17-63 421-464 (894)
63 KOG0153|consensus 98.6 5.2E-08 1.1E-12 66.0 4.8 51 16-69 227-277 (377)
64 KOG0109|consensus 98.6 2.8E-08 6.1E-13 66.2 3.4 55 14-73 75-129 (346)
65 KOG0124|consensus 98.6 1E-07 2.3E-12 65.4 5.3 48 18-65 211-261 (544)
66 KOG4205|consensus 98.6 2.1E-07 4.6E-12 62.7 6.3 53 17-69 97-152 (311)
67 KOG0131|consensus 98.6 5.9E-08 1.3E-12 60.9 3.4 56 14-69 93-152 (203)
68 KOG0116|consensus 98.6 1.3E-07 2.7E-12 65.9 5.2 53 17-69 288-343 (419)
69 KOG4208|consensus 98.5 4.1E-07 8.9E-12 57.9 5.7 53 17-69 49-105 (214)
70 smart00361 RRM_1 RNA recogniti 98.5 2.3E-07 5.1E-12 49.6 4.0 39 31-69 2-50 (70)
71 KOG4660|consensus 98.5 2.2E-07 4.8E-12 65.9 4.6 54 16-78 74-127 (549)
72 KOG0146|consensus 98.5 3.5E-07 7.7E-12 60.7 5.0 56 15-77 283-341 (371)
73 KOG0106|consensus 98.4 1.9E-07 4.2E-12 60.0 3.3 43 18-65 2-44 (216)
74 KOG0110|consensus 98.4 2.9E-07 6.3E-12 66.8 4.1 51 19-69 517-573 (725)
75 KOG0123|consensus 98.4 5E-07 1.1E-11 62.1 5.0 57 14-70 267-325 (369)
76 KOG4212|consensus 98.3 6E-07 1.3E-11 62.8 4.0 54 16-78 535-588 (608)
77 KOG1548|consensus 98.3 1.7E-06 3.7E-11 58.8 5.6 57 14-70 131-197 (382)
78 KOG0151|consensus 98.3 1.6E-06 3.5E-11 63.4 5.2 49 16-64 173-227 (877)
79 KOG4454|consensus 98.2 6.2E-07 1.3E-11 57.9 2.0 61 14-74 6-67 (267)
80 KOG4661|consensus 98.2 3.6E-06 7.9E-11 60.8 4.9 53 16-68 404-459 (940)
81 KOG0533|consensus 98.1 6.7E-06 1.5E-10 53.8 5.2 54 16-69 82-137 (243)
82 KOG1190|consensus 98.0 7.4E-06 1.6E-10 56.9 3.4 54 15-71 26-79 (492)
83 PF04059 RRM_2: RNA recognitio 98.0 3.7E-05 8.1E-10 43.9 5.7 48 18-65 2-54 (97)
84 KOG4211|consensus 98.0 2.6E-05 5.5E-10 55.1 5.9 52 17-69 10-62 (510)
85 KOG4209|consensus 97.9 1E-05 2.2E-10 52.7 3.5 56 15-70 99-157 (231)
86 KOG1457|consensus 97.9 1.8E-05 4E-10 51.4 4.6 53 17-69 34-90 (284)
87 PF08777 RRM_3: RNA binding mo 97.9 2.8E-05 6.2E-10 44.9 4.9 49 18-69 2-50 (105)
88 KOG0129|consensus 97.9 2.5E-05 5.4E-10 55.4 5.4 54 15-69 257-319 (520)
89 KOG1457|consensus 97.8 1.1E-05 2.5E-10 52.4 2.1 57 18-75 211-267 (284)
90 KOG4206|consensus 97.8 8.6E-05 1.9E-09 47.9 5.3 53 14-68 143-195 (221)
91 KOG0147|consensus 97.7 1.1E-05 2.4E-10 57.4 0.7 57 17-73 179-238 (549)
92 KOG0129|consensus 97.6 0.00017 3.8E-09 51.2 5.6 58 13-70 366-427 (520)
93 KOG4211|consensus 97.6 0.00024 5.1E-09 50.4 6.1 57 15-78 101-160 (510)
94 PF14605 Nup35_RRM_2: Nup53/35 97.5 0.00049 1.1E-08 35.1 5.3 51 18-79 2-52 (53)
95 KOG0226|consensus 97.5 0.00015 3.2E-09 47.9 3.7 54 16-69 189-245 (290)
96 KOG0120|consensus 97.5 0.00011 2.5E-09 52.3 3.3 49 15-63 287-338 (500)
97 KOG1855|consensus 97.4 0.0001 2.2E-09 51.6 2.4 56 16-71 230-301 (484)
98 KOG4210|consensus 97.3 0.00015 3.4E-09 48.5 2.3 55 13-67 180-238 (285)
99 KOG0106|consensus 97.2 0.00022 4.7E-09 46.1 2.1 58 12-74 94-151 (216)
100 PF08675 RNA_bind: RNA binding 97.2 0.0032 6.9E-08 35.2 6.0 47 14-66 6-52 (87)
101 PF11608 Limkain-b1: Limkain b 96.9 0.0041 8.8E-08 34.9 4.7 47 18-78 3-54 (90)
102 KOG1190|consensus 96.6 0.0053 1.1E-07 43.2 4.8 58 17-76 297-355 (492)
103 KOG4676|consensus 96.5 0.0044 9.5E-08 43.3 4.0 54 18-71 8-67 (479)
104 KOG2314|consensus 96.5 0.0079 1.7E-07 43.8 5.4 57 15-78 56-120 (698)
105 KOG1365|consensus 96.3 0.014 3.1E-07 40.9 5.7 54 18-78 162-221 (508)
106 KOG0128|consensus 96.2 0.00031 6.7E-09 52.5 -2.9 52 18-69 668-722 (881)
107 KOG0128|consensus 96.2 0.0031 6.6E-08 47.4 2.1 48 17-64 736-785 (881)
108 KOG0105|consensus 96.1 0.021 4.5E-07 36.6 5.2 44 18-65 116-159 (241)
109 KOG4849|consensus 96.1 0.0028 6E-08 43.9 1.4 46 18-63 81-131 (498)
110 KOG3152|consensus 96.1 0.0097 2.1E-07 39.5 3.8 36 17-52 74-109 (278)
111 KOG4307|consensus 96.0 0.0073 1.6E-07 45.0 3.3 62 10-71 427-491 (944)
112 COG5175 MOT2 Transcriptional r 95.9 0.013 2.9E-07 40.5 4.0 51 18-68 115-177 (480)
113 KOG0112|consensus 95.5 0.0044 9.4E-08 47.0 0.5 52 16-67 371-424 (975)
114 KOG1995|consensus 95.5 0.019 4E-07 39.6 3.2 52 16-67 65-127 (351)
115 KOG0112|consensus 95.4 0.036 7.9E-07 42.2 4.8 59 15-76 453-511 (975)
116 PF05172 Nup35_RRM: Nup53/35/4 94.9 0.076 1.7E-06 30.5 4.3 54 17-78 6-69 (100)
117 KOG1365|consensus 94.9 0.024 5.1E-07 39.8 2.6 54 17-70 280-338 (508)
118 KOG4410|consensus 94.6 0.19 4.2E-06 34.2 6.1 58 18-78 331-389 (396)
119 KOG0115|consensus 94.6 0.025 5.3E-07 37.6 1.9 48 18-65 32-81 (275)
120 KOG1456|consensus 93.9 0.3 6.5E-06 34.4 6.1 52 15-69 29-80 (494)
121 KOG4307|consensus 93.7 0.13 2.8E-06 38.7 4.3 58 18-75 868-928 (944)
122 KOG1456|consensus 92.9 0.59 1.3E-05 33.0 6.2 49 16-66 286-335 (494)
123 KOG0120|consensus 92.6 0.2 4.4E-06 36.2 3.9 39 34-79 426-470 (500)
124 PF03467 Smg4_UPF3: Smg-4/UPF3 92.6 0.2 4.4E-06 31.4 3.5 53 16-68 6-67 (176)
125 KOG2416|consensus 91.3 0.15 3.1E-06 37.7 1.9 51 16-69 443-494 (718)
126 KOG1548|consensus 91.0 0.42 9.2E-06 33.2 3.9 54 16-77 264-328 (382)
127 KOG2591|consensus 89.9 1 2.2E-05 33.3 5.1 51 17-78 175-227 (684)
128 PF15023 DUF4523: Protein of u 88.8 2.7 5.8E-05 26.0 5.7 49 17-69 86-138 (166)
129 PF07576 BRAP2: BRCA1-associat 87.3 4.1 8.9E-05 23.7 6.9 53 12-64 7-62 (110)
130 KOG2253|consensus 86.6 0.35 7.6E-06 35.9 1.2 53 15-73 38-90 (668)
131 KOG2193|consensus 85.5 0.82 1.8E-05 32.8 2.5 43 19-67 3-48 (584)
132 PF10309 DUF2414: Protein of u 85.3 3.8 8.3E-05 21.5 4.8 44 18-67 6-53 (62)
133 KOG0804|consensus 84.7 3.1 6.6E-05 30.0 5.0 53 17-69 74-128 (493)
134 PF10567 Nab6_mRNP_bdg: RNA-re 82.6 2.4 5.2E-05 28.9 3.6 37 17-53 15-51 (309)
135 KOG2891|consensus 82.4 3 6.4E-05 28.6 4.0 40 12-51 144-195 (445)
136 PF11767 SET_assoc: Histone ly 82.3 4.3 9.3E-05 21.5 3.9 38 28-78 11-48 (66)
137 PF03468 XS: XS domain; Inter 82.1 1.3 2.8E-05 26.0 2.1 47 19-65 10-65 (116)
138 PF08952 DUF1866: Domain of un 79.7 2.6 5.7E-05 25.8 2.9 36 33-73 52-87 (146)
139 PF09707 Cas_Cas2CT1978: CRISP 78.5 6.1 0.00013 22.1 3.9 47 17-63 25-71 (86)
140 KOG2202|consensus 76.6 0.5 1.1E-05 31.5 -1.0 37 33-69 84-123 (260)
141 KOG4210|consensus 75.6 1.3 2.7E-05 29.9 0.7 57 16-72 87-146 (285)
142 KOG4285|consensus 73.7 21 0.00045 24.7 6.1 51 17-78 197-247 (350)
143 COG0030 KsgA Dimethyladenosine 70.7 8.1 0.00018 25.8 3.6 33 18-50 96-128 (259)
144 PRK11558 putative ssRNA endonu 69.8 9.6 0.00021 21.8 3.3 48 17-64 27-74 (97)
145 PF07292 NID: Nmi/IFP 35 domai 68.8 3.5 7.6E-05 23.1 1.4 24 16-39 51-74 (88)
146 KOG2318|consensus 66.3 15 0.00033 27.5 4.5 37 14-50 171-212 (650)
147 PF13046 DUF3906: Protein of u 65.7 9.2 0.0002 20.2 2.5 31 31-61 32-63 (64)
148 PF15513 DUF4651: Domain of un 64.0 12 0.00026 19.7 2.7 19 32-50 9-27 (62)
149 KOG4574|consensus 62.4 2.2 4.7E-05 33.1 -0.3 56 19-77 300-355 (1007)
150 KOG4454|consensus 60.0 1.8 4E-05 28.5 -0.9 49 18-66 81-135 (267)
151 COG0724 RNA-binding proteins ( 59.9 25 0.00055 21.6 4.3 40 14-53 222-261 (306)
152 KOG1996|consensus 58.3 14 0.00031 25.5 3.0 42 32-73 301-346 (378)
153 TIGR01873 cas_CT1978 CRISPR-as 57.9 22 0.00048 19.9 3.3 47 17-63 25-72 (87)
154 KOG2068|consensus 56.0 7.5 0.00016 26.9 1.4 52 18-69 78-138 (327)
155 KOG4660|consensus 55.5 14 0.00031 27.3 2.8 46 20-65 391-440 (549)
156 PF08206 OB_RNB: Ribonuclease 54.7 15 0.00033 18.5 2.2 20 55-74 7-27 (58)
157 PF11411 DNA_ligase_IV: DNA li 54.5 11 0.00025 17.6 1.5 17 27-43 19-35 (36)
158 KOG4008|consensus 54.4 14 0.0003 24.7 2.4 33 15-47 38-70 (261)
159 PF00398 RrnaAD: Ribosomal RNA 54.1 17 0.00037 23.8 2.9 30 17-46 97-128 (262)
160 KOG4676|consensus 52.4 1.4 3E-05 31.3 -2.6 47 18-65 152-198 (479)
161 cd01612 APG12_C Ubiquitin-like 52.4 39 0.00086 18.7 4.5 45 11-68 40-85 (87)
162 COG5353 Uncharacterized protei 51.7 57 0.0012 20.3 6.2 48 17-64 87-150 (161)
163 KOG2135|consensus 49.2 11 0.00024 27.5 1.4 44 18-64 373-417 (526)
164 PRK00274 ksgA 16S ribosomal RN 48.5 30 0.00064 22.8 3.3 22 19-40 107-128 (272)
165 PTZ00338 dimethyladenosine tra 48.5 27 0.00058 23.6 3.2 28 19-46 103-130 (294)
166 PF15407 Spo7_2_N: Sporulation 48.1 6.3 0.00014 21.0 0.1 25 15-39 25-49 (67)
167 cd01611 GABARAP Ubiquitin doma 46.0 49 0.0011 19.2 3.6 46 11-68 65-110 (112)
168 PF06613 KorB_C: KorB C-termin 44.5 34 0.00074 17.8 2.5 19 47-65 20-40 (60)
169 PF15063 TC1: Thyroid cancer p 43.4 16 0.00035 20.0 1.2 29 16-44 24-52 (79)
170 cd04458 CSP_CDS Cold-Shock Pro 42.3 27 0.00058 17.7 2.0 11 55-65 11-21 (65)
171 PTZ00380 microtubule-associate 41.9 35 0.00077 20.3 2.6 46 11-70 65-111 (121)
172 PF00313 CSD: 'Cold-shock' DNA 41.7 23 0.0005 18.0 1.7 12 55-66 11-22 (66)
173 cd00027 BRCT Breast Cancer Sup 40.9 44 0.00095 15.9 3.4 27 18-44 2-28 (72)
174 PRK09937 stationary phase/star 40.5 23 0.0005 19.0 1.6 9 55-63 12-20 (74)
175 PRK15464 cold shock-like prote 39.8 20 0.00043 19.1 1.2 11 55-65 15-25 (70)
176 PRK09507 cspE cold shock prote 39.8 22 0.00048 18.7 1.4 11 55-65 14-24 (69)
177 PLN00168 Cytochrome P450; Prov 39.0 74 0.0016 22.7 4.3 40 10-49 34-78 (519)
178 PRK14998 cold shock-like prote 38.7 24 0.00053 18.8 1.5 10 55-64 12-21 (73)
179 PRK10943 cold shock-like prote 38.4 23 0.0005 18.6 1.4 11 55-65 14-24 (69)
180 PLN00110 flavonoid 3',5'-hydro 38.2 85 0.0018 22.4 4.5 40 10-49 30-71 (504)
181 smart00457 MACPF membrane-atta 37.6 18 0.0004 22.5 1.0 22 22-43 30-51 (194)
182 TIGR00755 ksgA dimethyladenosi 36.9 60 0.0013 21.0 3.4 25 19-43 96-120 (253)
183 PRK15463 cold shock-like prote 36.8 26 0.00056 18.5 1.4 11 55-65 15-25 (70)
184 KOG4483|consensus 36.5 1.3E+02 0.0028 21.9 5.1 43 17-63 391-434 (528)
185 TIGR02381 cspD cold shock doma 35.9 31 0.00066 18.0 1.6 11 55-65 12-22 (68)
186 KOG0156|consensus 35.9 46 0.001 24.2 2.9 41 10-50 25-68 (489)
187 PLN03112 cytochrome P450 famil 35.3 1E+02 0.0023 21.8 4.6 43 8-50 29-73 (514)
188 PRK09890 cold shock protein Cs 34.4 24 0.00052 18.6 1.0 11 55-65 15-25 (70)
189 PHA01632 hypothetical protein 34.2 56 0.0012 16.9 2.3 21 20-40 19-39 (64)
190 TIGR02542 B_forsyth_147 Bacter 33.2 17 0.00037 21.7 0.4 38 26-63 83-126 (145)
191 smart00650 rADc Ribosomal RNA 33.1 87 0.0019 18.8 3.5 22 19-40 79-100 (169)
192 PRK10354 RNA chaperone/anti-te 31.8 35 0.00076 17.9 1.4 10 55-64 15-24 (70)
193 PF05189 RTC_insert: RNA 3'-te 31.7 98 0.0021 17.2 4.6 46 19-64 12-65 (103)
194 PF14893 PNMA: PNMA 30.4 47 0.001 23.1 2.1 25 16-40 17-41 (331)
195 PLN02183 ferulate 5-hydroxylas 30.1 1.2E+02 0.0027 21.6 4.3 40 10-49 35-76 (516)
196 COG1278 CspC Cold shock protei 29.0 33 0.00071 18.3 1.0 10 55-64 12-21 (67)
197 PLN02971 tryptophan N-hydroxyl 28.9 1E+02 0.0022 22.3 3.7 41 9-49 55-100 (543)
198 PF14111 DUF4283: Domain of un 28.9 53 0.0012 19.2 2.0 35 18-52 105-140 (153)
199 COG5638 Uncharacterized conser 27.7 1.5E+02 0.0031 21.8 4.2 37 14-50 143-184 (622)
200 PF01823 MACPF: MAC/Perforin d 27.6 17 0.00036 22.5 -0.4 24 22-45 53-79 (212)
201 COG5594 Uncharacterized integr 26.3 65 0.0014 25.2 2.4 29 16-44 207-236 (827)
202 PF00837 T4_deiodinase: Iodoth 25.3 1.1E+02 0.0024 20.3 3.1 26 16-41 210-236 (237)
203 PRK14896 ksgA 16S ribosomal RN 25.2 78 0.0017 20.6 2.4 21 19-39 93-113 (258)
204 PLN03141 3-epi-6-deoxocathaste 25.2 72 0.0016 22.3 2.4 43 8-50 4-53 (452)
205 PLN02687 flavonoid 3'-monooxyg 24.9 1.7E+02 0.0038 20.8 4.3 40 10-49 33-74 (517)
206 COG5584 Predicted small secret 23.5 85 0.0018 18.1 2.0 30 24-53 29-58 (103)
207 PF04847 Calcipressin: Calcipr 23.1 1.8E+02 0.0039 18.4 3.7 38 30-70 8-45 (184)
208 PHA02968 hypothetical protein; 22.7 1.6E+02 0.0035 20.7 3.6 30 34-63 32-61 (414)
209 PLN02966 cytochrome P450 83A1 22.5 2E+02 0.0044 20.4 4.3 40 10-49 28-70 (502)
210 PF12385 Peptidase_C70: Papain 22.5 95 0.0021 19.5 2.3 22 25-46 90-113 (166)
211 PRK00050 16S rRNA m(4)C1402 me 21.9 60 0.0013 22.1 1.4 19 28-46 138-156 (296)
212 PHA03075 glutaredoxin-like pro 21.6 1.9E+02 0.0042 17.2 3.5 33 34-66 59-91 (123)
213 PF05042 Caleosin: Caleosin re 21.6 1.7E+02 0.0037 18.6 3.3 31 14-44 64-108 (174)
214 PF15390 DUF4613: Domain of un 21.5 1.3E+02 0.0027 23.1 3.0 25 39-63 371-395 (671)
215 PF05632 DUF792: Borrelia burg 21.5 1.1E+02 0.0024 19.8 2.4 28 34-61 41-68 (213)
216 TIGR00006 S-adenosyl-methyltra 21.4 62 0.0013 22.2 1.4 19 28-46 140-158 (305)
217 PRK06937 type III secretion sy 21.2 1E+02 0.0022 19.5 2.3 31 33-63 148-179 (204)
218 PF11910 NdhO: Cyanobacterial 21.1 1.1E+02 0.0024 16.2 2.0 21 36-63 30-50 (67)
219 cd06257 DnaJ DnaJ domain or J- 20.4 1.2E+02 0.0025 14.3 2.0 18 23-40 6-23 (55)
No 1
>KOG0114|consensus
Probab=99.81 E-value=7.6e-20 Score=105.11 Aligned_cols=69 Identities=61% Similarity=1.005 Sum_probs=61.8
Q ss_pred CCCC-ccCCCCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 1 MAMS-QRRANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 1 m~~~-~~~~~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
|+|+ .++.+.++|++.++.|||.|||+.+|.+++.++|++||.|..|++..++.++|-|||+|++...|
T Consensus 1 m~~~~~~~~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dA 70 (124)
T KOG0114|consen 1 MAMTGKKKQNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDA 70 (124)
T ss_pred CCccccccCCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhH
Confidence 6777 56677899999999999999999999999999999999999999999999999999999444333
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.61 E-value=3e-15 Score=90.78 Aligned_cols=58 Identities=12% Similarity=0.155 Sum_probs=49.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccC
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVN 72 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~ 72 (80)
..+++|||+|||+.+++++|+++|++||.|.++.++.|.. ++|||||+|.+.++|-.+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~A 92 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAA 92 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHH
Confidence 3467899999999999999999999999999999988764 589999999655555333
No 3
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.56 E-value=1.1e-14 Score=95.11 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=47.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.++|||+|||+.+++++|+++|+.||.|.+|+|..++.++|||||+|.+.+++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaA 56 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGA 56 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHH
Confidence 47999999999999999999999999999999999887889999999444333
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.56 E-value=1.3e-14 Score=97.27 Aligned_cols=54 Identities=15% Similarity=0.127 Sum_probs=46.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+..+|||+|||+.+++++|+++|++||+|.+|+|+.++. ++|||||+|.+.++|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A 58 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDA 58 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHH
Confidence 357899999999999999999999999999999987754 689999999444433
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.55 E-value=2.3e-14 Score=96.05 Aligned_cols=55 Identities=13% Similarity=0.249 Sum_probs=47.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~ 71 (80)
+.+|||+|||+.+++++|.++|++||.|.+++++.|.. ++|||||+|.+.++|..
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~ 326 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAM 326 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHH
Confidence 45799999999999999999999999999999998763 68999999955555433
No 6
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.55 E-value=1e-14 Score=77.17 Aligned_cols=50 Identities=24% Similarity=0.375 Sum_probs=42.6
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCEEEEEEccC--CCCCcEEEEEecccccc
Q psy10279 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNT--PDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 20 l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~--~~~~G~afv~f~~~~~~ 69 (80)
|||+|||+++++++|+++|++||.|..+.+..+ +..+|+|||+|.+.+++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a 52 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDA 52 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHH
Confidence 799999999999999999999999999988875 22579999999444443
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.53 E-value=5e-14 Score=95.59 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=50.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccC
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVN 72 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~ 72 (80)
+....++|||+|||+++++++|+++|..||.|.+|+|+.|.. ++|||||+|.+.++|..+
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~A 165 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRA 165 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHH
Confidence 344568999999999999999999999999999999988754 579999999655555333
No 8
>KOG0125|consensus
Probab=99.52 E-value=2.6e-14 Score=95.51 Aligned_cols=59 Identities=15% Similarity=0.324 Sum_probs=51.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCC-CCCcEEEEEeccccccccChhhhccC
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP-DTRYLTKSLVMKCMIFLVNMELSDKL 79 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~-~~~G~afv~f~~~~~~~~~~~~a~~~ 79 (80)
+...++|+|+|||+...+.||+..|.+||+|.+|.|+.+. .+||||||+| .+++|||++
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTm-------en~~dadRA 152 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTM-------ENPADADRA 152 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEe-------cChhhHHHH
Confidence 3445899999999999999999999999999999887654 4899999999 888888764
No 9
>KOG0149|consensus
Probab=99.51 E-value=2.8e-14 Score=91.66 Aligned_cols=57 Identities=7% Similarity=0.124 Sum_probs=49.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccC
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVN 72 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~ 72 (80)
.-.+||||+|+|.++.+.|++.|++||+|.+..++.|+. +||||||+|.++|+|-.+
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rA 70 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRA 70 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHH
Confidence 347899999999999999999999999999998888876 689999999776666433
No 10
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.51 E-value=6e-14 Score=90.78 Aligned_cols=54 Identities=20% Similarity=0.263 Sum_probs=48.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+.+|||+||++.+++++|+++|+.||.|.+|+|..+++++|+|||+|.+.+++
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aa 57 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYAL 57 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHH
Confidence 458999999999999999999999999999999999988889999999544433
No 11
>KOG0107|consensus
Probab=99.49 E-value=5e-14 Score=87.39 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=42.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEec
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVM 64 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~ 64 (80)
+++||||||+..+++.+|+.+|..||.+..|++.. .+.|||||+|+
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvAr--nPPGfAFVEFe 55 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVAR--NPPGFAFVEFE 55 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEee--cCCCceEEecc
Confidence 58999999999999999999999999999999886 45899999993
No 12
>KOG0121|consensus
Probab=99.47 E-value=7.5e-14 Score=83.06 Aligned_cols=48 Identities=25% Similarity=0.399 Sum_probs=43.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEe
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLV 63 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f 63 (80)
.+++||||||++.++++++.++|+++|.|..|-+..|+. +.|||||+|
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVey 85 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEY 85 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEE
Confidence 468999999999999999999999999999998877765 469999999
No 13
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.44 E-value=2.9e-13 Score=96.65 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=49.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~~~ 71 (80)
++..+++|||+|||+++++++|.++|++||.|.+++|+.|.. ++|||||+|.+.|+|..
T Consensus 54 ~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~ 114 (578)
T TIGR01648 54 QPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKE 114 (578)
T ss_pred CCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHH
Confidence 345578999999999999999999999999999999988743 68999999955554433
No 14
>KOG0105|consensus
Probab=99.44 E-value=2.1e-13 Score=85.63 Aligned_cols=51 Identities=33% Similarity=0.516 Sum_probs=45.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMK 65 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~ 65 (80)
...+.|||+|||.++.+.++.++|.+||.|..|.|.......+||||+|++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd 54 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFED 54 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecC
Confidence 345899999999999999999999999999999987777678899999943
No 15
>KOG0113|consensus
Probab=99.44 E-value=2.4e-13 Score=90.01 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=56.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccChhhhcc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
...++-++|||+.|++++++..|+..|++||+|..|+|+.|.. ++|||||+|++..+...+.++|+.
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG 165 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADG 165 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccC
Confidence 3345679999999999999999999999999999999998854 689999999876666666666653
No 16
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.42 E-value=3.8e-13 Score=71.68 Aligned_cols=48 Identities=23% Similarity=0.463 Sum_probs=40.0
Q ss_pred EEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccc
Q psy10279 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCM 67 (80)
Q Consensus 20 l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~ 67 (80)
|||+|||+.+++++|.++|+.||.|..+++..++. .+|+|||+|.+.+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~ 50 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEE 50 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHH
Confidence 79999999999999999999999999999887654 5799999994333
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.40 E-value=1.1e-12 Score=90.73 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=46.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..++|||+|||..+++++|+++|++||.|..|+++.++. ++|||||+|.+.++|
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A 144 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESV 144 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHH
Confidence 467999999999999999999999999999999988754 589999999444433
No 18
>KOG0144|consensus
Probab=99.39 E-value=5.4e-13 Score=91.85 Aligned_cols=57 Identities=14% Similarity=0.264 Sum_probs=49.5
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCM 67 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~ 67 (80)
..++....++|||.+|..++|.+|+.+|++||.|.+|.|++|+. ++|||||.|.+.+
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk 87 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRK 87 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHH
Confidence 34455567899999999999999999999999999999999987 5899999994433
No 19
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.39 E-value=9.8e-13 Score=89.32 Aligned_cols=56 Identities=34% Similarity=0.345 Sum_probs=47.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~ 71 (80)
..++|||+|||+.+++++|+++|++||.|..++++.++. ++|||||+|.+.++|..
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~ 250 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQE 250 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHH
Confidence 357899999999999999999999999999999987754 57999999955444433
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.38 E-value=1.1e-12 Score=94.13 Aligned_cols=55 Identities=13% Similarity=0.247 Sum_probs=47.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~ 70 (80)
..++|||+|||+.+++++|+++|.+||.|.+|++..|+. ++|||||+|.+.+++-
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~ 163 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQ 163 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHH
Confidence 457999999999999999999999999999999988754 6899999995555443
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.36 E-value=1.5e-12 Score=92.25 Aligned_cols=48 Identities=19% Similarity=0.346 Sum_probs=43.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKC 66 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~ 66 (80)
.|||+|||.++++++|+++|++||.|.+|++.+|.. ++|||||+|.+.
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~ 52 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNP 52 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCH
Confidence 699999999999999999999999999999988765 579999999433
No 22
>KOG0126|consensus
Probab=99.36 E-value=2e-13 Score=85.31 Aligned_cols=58 Identities=19% Similarity=0.348 Sum_probs=51.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccC
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVN 72 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~ 72 (80)
..+..|||||||++.|+.+|..+|++||.|.+|.|++|+. ++||||+.|++..+-+.+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILA 93 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILA 93 (219)
T ss_pred ccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEE
Confidence 3468999999999999999999999999999999999876 589999999887776443
No 23
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.34 E-value=2.8e-12 Score=89.89 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=45.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~ 71 (80)
++++|||+|||+.+++++|+++|++||.|.+|.++. .+|+|||+|.+.++|-.
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~ 53 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP---GKRQALVEFEDEESAKA 53 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHH
Confidence 358999999999999999999999999999998875 36899999966555533
No 24
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.33 E-value=3.5e-12 Score=91.58 Aligned_cols=55 Identities=9% Similarity=0.165 Sum_probs=47.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~ 70 (80)
..++|||+|||+++++++|+++|+.||.|.++++..+.. .+|||||+|.+.+++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQS 260 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHH
Confidence 347899999999999999999999999999999998754 5899999995555443
No 25
>KOG0122|consensus
Probab=99.33 E-value=2.5e-12 Score=83.28 Aligned_cols=54 Identities=11% Similarity=0.215 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
...+|-|.|||.++++.+|.++|.+||.|..+.|.+|+. ++|||||.|...+.|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA 244 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDA 244 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHH
Confidence 346799999999999999999999999999999999887 489999999444444
No 26
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.32 E-value=7.1e-12 Score=87.60 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=46.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+.+++++|.++|+.||.|..+.++.+.. ++|||||+|.+.+++
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a 350 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVT 350 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHH
Confidence 357999999999999999999999999999999887643 589999999554444
No 27
>KOG0117|consensus
Probab=99.32 E-value=3.8e-12 Score=87.95 Aligned_cols=58 Identities=21% Similarity=0.337 Sum_probs=51.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccChhhhcc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
+..++.||||.||.++.+++|..+|++.|+|-++||+.|+. ++|||||+| .++++|+.
T Consensus 80 p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf-------~~Ke~Aq~ 140 (506)
T KOG0117|consen 80 PPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTF-------CTKEEAQE 140 (506)
T ss_pred CCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEe-------ecHHHHHH
Confidence 35578999999999999999999999999999999999854 699999999 77777764
No 28
>smart00362 RRM_2 RNA recognition motif.
Probab=99.28 E-value=1.6e-11 Score=63.98 Aligned_cols=50 Identities=20% Similarity=0.416 Sum_probs=42.6
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCC-CCCcEEEEEeccccc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP-DTRYLTKSLVMKCMI 68 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~-~~~G~afv~f~~~~~ 68 (80)
+|||+|||..++.++|.++|.+||.+..+.+..+. .++|+|||+|.+.+.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~ 51 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEED 51 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHH
Confidence 48999999999999999999999999999887664 357999999944433
No 29
>KOG0148|consensus
Probab=99.28 E-value=8.2e-12 Score=82.05 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=50.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChh
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNME 74 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~ 74 (80)
+..+++|||||++..+++++|++.|++||.|.+||+..+ +||+||.|++-|+|.++..
T Consensus 161 sp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~---qGYaFVrF~tkEaAahAIv 218 (321)
T KOG0148|consen 161 SPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD---QGYAFVRFETKEAAAHAIV 218 (321)
T ss_pred CCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc---cceEEEEecchhhHHHHHH
Confidence 445799999999999999999999999999999999866 5999999988777755443
No 30
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.27 E-value=1.4e-11 Score=77.67 Aligned_cols=54 Identities=22% Similarity=0.466 Sum_probs=47.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCC---CCCcEEEEEeccccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP---DTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~---~~~G~afv~f~~~~~~~ 70 (80)
..+|||+|||+.+++++|.++|.+||.+..+.+..++ .++|+|||+|.+.+.+.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~ 171 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAE 171 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHH
Confidence 5899999999999999999999999999999998885 36899999995544443
No 31
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.27 E-value=1.4e-11 Score=87.35 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=47.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
..+.+|||+|||..+++++|+++|++||.|.+++++.+.. ++|||||+|.+.++|
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A 339 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEA 339 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHH
Confidence 3457899999999999999999999999999999988753 689999999554444
No 32
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.27 E-value=1.4e-11 Score=85.17 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=48.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccC
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVN 72 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~ 72 (80)
.++|||+|||..+++++|.++|++||.|..|.+..+.. ++|||||+|.+.+.|..+
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A 244 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEA 244 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHH
Confidence 58999999999999999999999999999999987764 489999999665555433
No 33
>PLN03213 repressor of silencing 3; Provisional
Probab=99.26 E-value=1.7e-11 Score=86.22 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=44.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMK 65 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~ 65 (80)
..+-+||||||++.+++++|..+|+.||.|.++.|++.. ++|||||+|..
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET-GRGFAFVEMss 57 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK-GRSFAYIDFSP 57 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc-CCceEEEEecC
Confidence 345789999999999999999999999999999998554 49999999943
No 34
>KOG0144|consensus
Probab=99.25 E-value=1.9e-12 Score=89.16 Aligned_cols=64 Identities=22% Similarity=0.331 Sum_probs=53.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc---ccChhhhccCC
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF---LVNMELSDKLE 80 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~---~~~~~~a~~~~ 80 (80)
.++||||-|+..+++.+++++|++||.|++|+|++|.. +||||||.|...|-| +..+....++|
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tme 192 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTME 192 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeec
Confidence 48899999999999999999999999999999999766 799999999765444 55555555554
No 35
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.25 E-value=2.5e-11 Score=85.21 Aligned_cols=53 Identities=15% Similarity=0.280 Sum_probs=45.8
Q ss_pred CCcEEEEecCCC-CCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 16 VNRVLYIRNLPY-KITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 16 ~~~~l~V~nLp~-~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
++++|||+|||+ .+++++|+++|+.||.|.+|+++.++ +|+|||+|.+.++|.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~--~g~afV~f~~~~~A~ 327 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK--KETALIEMADPYQAQ 327 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC--CCEEEEEECCHHHHH
Confidence 568999999998 69999999999999999999998764 799999995544443
No 36
>KOG0131|consensus
Probab=99.23 E-value=1.9e-11 Score=76.35 Aligned_cols=56 Identities=16% Similarity=0.210 Sum_probs=48.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMI 68 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~ 68 (80)
+-....+||||||+..++++.|+++|-+.|+|.+++++.|+. .+||||++|.+.|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eed 63 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEED 63 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhh
Confidence 345568999999999999999999999999999999998876 37999999944433
No 37
>KOG0127|consensus
Probab=99.19 E-value=6.6e-11 Score=83.66 Aligned_cols=56 Identities=20% Similarity=0.361 Sum_probs=48.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
...+.+|||+|||+++++++|...|++||.|..+.|+.++. ++|.|||.|.+...+
T Consensus 289 ~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~ 347 (678)
T KOG0127|consen 289 ITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAA 347 (678)
T ss_pred ccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHH
Confidence 34458999999999999999999999999999998888776 589999999654443
No 38
>KOG4207|consensus
Probab=99.18 E-value=4.6e-11 Score=76.19 Aligned_cols=54 Identities=20% Similarity=0.352 Sum_probs=47.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccChhhhcc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
..|.|-||.+.++.++|..+|++||.|-+|.|+.|.. ++|||||.| +...+|++
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf-------~~k~daed 70 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRF-------HDKRDAED 70 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEe-------eecchHHH
Confidence 5789999999999999999999999999999999876 579999999 66655554
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.13 E-value=2.8e-10 Score=59.43 Aligned_cols=51 Identities=22% Similarity=0.409 Sum_probs=43.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
+|+|+|||..+++++++++|..+|.|..+.+..++. ++|+|||+|.+.+.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a 53 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDA 53 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHH
Confidence 479999999999999999999999999998887654 479999999554444
No 40
>KOG0108|consensus
Probab=99.12 E-value=1.6e-10 Score=80.45 Aligned_cols=52 Identities=13% Similarity=0.280 Sum_probs=46.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+.+||||+|+++++++|.++|+..|.|.+++++.|+. .+||||++|.+.+.+
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~ 73 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETA 73 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhH
Confidence 8999999999999999999999999999999999887 489999999544433
No 41
>smart00360 RRM RNA recognition motif.
Probab=99.10 E-value=2.1e-10 Score=59.35 Aligned_cols=48 Identities=23% Similarity=0.373 Sum_probs=40.5
Q ss_pred EecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 22 IRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 22 V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
|+|||..+++++|+++|.+||.|..+.+..+.. ++|+|||+|.+.+.+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a 51 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDA 51 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHH
Confidence 579999999999999999999999998876543 579999999554444
No 42
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.10 E-value=3.2e-10 Score=81.27 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=43.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcC--CCEEEEEEccCCCCCcEEEEEeccccccccCh
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKY--GAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNM 73 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~--G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~ 73 (80)
.++|||+|||+.+++++|+++|++| |.|.+|.+. ++||||+|.+.++|..+.
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~-----rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI-----RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee-----cCeEEEEeCCHHHHHHHH
Confidence 4789999999999999999999999 999999765 679999995555554333
No 43
>KOG0130|consensus
Probab=99.06 E-value=2e-10 Score=69.14 Aligned_cols=55 Identities=15% Similarity=0.222 Sum_probs=48.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCC---CcEEEEEeccccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDT---RYLTKSLVMKCMIFL 70 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~---~G~afv~f~~~~~~~ 70 (80)
.+..|||.++..+.+++++.+.|..||+|..++|..|+.+ +|||.|+|++.+.|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq 128 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQ 128 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHH
Confidence 3578999999999999999999999999999999888774 899999996655553
No 44
>KOG0148|consensus
Probab=99.04 E-value=4.4e-10 Score=74.00 Aligned_cols=54 Identities=11% Similarity=0.250 Sum_probs=48.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccChhhhcc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
..+||+.|..+++-++|++.|.+||+|.++++++|.. +|||+||.| .++++|+.
T Consensus 63 fhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf-------~~k~dAEn 119 (321)
T KOG0148|consen 63 FHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSF-------PNKEDAEN 119 (321)
T ss_pred eeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEec-------cchHHHHH
Confidence 5799999999999999999999999999999998865 689999999 66666654
No 45
>KOG0117|consensus
Probab=99.02 E-value=2.6e-10 Score=79.01 Aligned_cols=57 Identities=19% Similarity=0.310 Sum_probs=50.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhccC
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDKL 79 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~~ 79 (80)
..|||+||+.++|++.|+++|++||.|.+|..+ +-||||.|...++++.++++-...
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngk 316 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGK 316 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCc
Confidence 579999999999999999999999999999766 459999999999998888766543
No 46
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.02 E-value=1.3e-09 Score=76.29 Aligned_cols=51 Identities=14% Similarity=0.245 Sum_probs=39.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcC------------CCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKY------------GAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~------------G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..++|||||||+.+++++|.++|..+ +.|..+.+. ..+|||||+|.+.+.|
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A 236 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEA 236 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHH
Confidence 35799999999999999999999974 345555543 3479999999544444
No 47
>KOG0111|consensus
Probab=99.02 E-value=1.6e-10 Score=74.47 Aligned_cols=64 Identities=22% Similarity=0.222 Sum_probs=53.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc---ccChhhh
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF---LVNMELS 76 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~---~~~~~~a 76 (80)
+....++||||+|..++++.-|...|-+||.|.+|+++.|-. .+|||||+|+.+|+| +.|+.++
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnes 75 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNES 75 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchh
Confidence 334568999999999999999999999999999999998865 489999999888877 4444443
No 48
>KOG0145|consensus
Probab=99.01 E-value=5.5e-10 Score=73.53 Aligned_cols=57 Identities=21% Similarity=0.243 Sum_probs=50.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccChhhhccC
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVNMELSDKL 79 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~~~~a~~~ 79 (80)
....|.|.-||..+++++++.+|+..|+|++|++++|+- +-||+||.| ..++||+++
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNY-------v~p~DAe~A 99 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNY-------VRPKDAEKA 99 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeee-------cChHHHHHH
Confidence 346788999999999999999999999999999999876 469999999 888888764
No 49
>KOG0127|consensus
Probab=99.01 E-value=8.7e-10 Score=78.13 Aligned_cols=47 Identities=26% Similarity=0.422 Sum_probs=43.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEe
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLV 63 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f 63 (80)
...|.|+||||.+...+|+.+|+.||.|.+|.|+..+. ..|||||.|
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~f 165 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQF 165 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEE
Confidence 57899999999999999999999999999999987655 469999999
No 50
>KOG4212|consensus
Probab=98.98 E-value=1.4e-09 Score=75.66 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=54.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhh-cCCCEEEEEEccCCC--CCcEEEEEeccccccccChhhhccC
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFG-KYGAIRQIRIGNTPD--TRYLTKSLVMKCMIFLVNMELSDKL 79 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~~~~~~~a~~~ 79 (80)
...+.+||.|+|+++.|.+|+++|. +.|+|..|.|..|.. ++|||.|+|++.|++-...|..+|.
T Consensus 42 ~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~ 109 (608)
T KOG4212|consen 42 ARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKY 109 (608)
T ss_pred cccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhc
Confidence 3457799999999999999999998 689999999998876 5899999997777766666655554
No 51
>KOG0147|consensus
Probab=98.96 E-value=3.5e-10 Score=79.69 Aligned_cols=54 Identities=30% Similarity=0.489 Sum_probs=47.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccChhhhcc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
..||||||.+++++.+|+.+|.+||.|..|.+..|.. ++|||||+| .++++|.+
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f-------~~~~~ar~ 335 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITF-------VNKEDARK 335 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEE-------ecHHHHHH
Confidence 3499999999999999999999999999999998853 689999999 77777654
No 52
>KOG0109|consensus
Probab=98.94 E-value=7.3e-10 Score=73.60 Aligned_cols=43 Identities=26% Similarity=0.405 Sum_probs=39.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMK 65 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~ 65 (80)
.+|||||||.++++.+|+.+|++||+|.+|.|+ |.||||.-++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIv-----KNYgFVHiEd 45 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIV-----KNYGFVHIED 45 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeee-----cccceEEeec
Confidence 469999999999999999999999999999998 6789998864
No 53
>KOG0145|consensus
Probab=98.91 E-value=6.4e-09 Score=68.55 Aligned_cols=52 Identities=12% Similarity=0.261 Sum_probs=46.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCM 67 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~ 67 (80)
.+..|||.||.++.++.-|..+|++||.|..+++.+|-. .||||||...+..
T Consensus 277 ~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYd 331 (360)
T KOG0145|consen 277 GGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYD 331 (360)
T ss_pred CeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchH
Confidence 468999999999999999999999999999999998865 4899999994433
No 54
>KOG4206|consensus
Probab=98.88 E-value=7e-09 Score=66.49 Aligned_cols=56 Identities=30% Similarity=0.358 Sum_probs=48.1
Q ss_pred CCcEEEEecCCCCCCHHHHHH----HhhcCCCEEEEEEccCCCCCcEEEEEecccccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYD----IFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~----~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~ 71 (80)
++.+|||.||+..+..++|+. +|++||.|.+|........+|-|||.|.+.+++-.
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~ 67 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASA 67 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHH
Confidence 346999999999999998877 99999999999988888889999999966555533
No 55
>KOG0123|consensus
Probab=98.88 E-value=2.9e-09 Score=73.06 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=44.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC-CCcEEEEEecccccc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-TRYLTKSLVMKCMIF 69 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~-~~G~afv~f~~~~~~ 69 (80)
.+||.||+++++..+|.++|+.||.|.+|++..+.. ++|| ||+|++.++|
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a 128 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESA 128 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHH
Confidence 399999999999999999999999999999998876 6899 9999544443
No 56
>KOG4205|consensus
Probab=98.87 E-value=5e-09 Score=70.43 Aligned_cols=54 Identities=15% Similarity=0.263 Sum_probs=48.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..+++||++|+|.++++.|++.|.+||.|.+|.+++|+. ++||+||+|.+.+..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v 61 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGV 61 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcch
Confidence 568999999999999999999999999999999998876 479999999755443
No 57
>KOG0124|consensus
Probab=98.80 E-value=2.7e-09 Score=73.04 Aligned_cols=57 Identities=14% Similarity=0.279 Sum_probs=50.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccChh
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVNME 74 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~~~ 74 (80)
++||||.+.+++.++.++..|.+||+|.+|++.+|+- .+|||||+|+-.|.+..+.|
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlE 173 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALE 173 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHH
Confidence 7899999999999999999999999999999999876 48999999977666654443
No 58
>KOG0415|consensus
Probab=98.79 E-value=5.8e-09 Score=71.08 Aligned_cols=50 Identities=18% Similarity=0.210 Sum_probs=44.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCC---CcEEEEEecc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDT---RYLTKSLVMK 65 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~---~G~afv~f~~ 65 (80)
+...|||..|.+.++.++|.-+|+.||.|.+|.+++|..+ --||||+|++
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen 290 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFEN 290 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecc
Confidence 3478999999999999999999999999999999988764 4699999943
No 59
>KOG0146|consensus
Probab=98.71 E-value=2e-08 Score=66.45 Aligned_cols=50 Identities=18% Similarity=0.307 Sum_probs=44.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMK 65 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~ 65 (80)
..++||||-|...-+|+|++.+|..||.|.+|.+.+... +|||+||.|.+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s 69 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSS 69 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEecc
Confidence 568999999999999999999999999999998876544 79999999953
No 60
>KOG0110|consensus
Probab=98.71 E-value=1.5e-08 Score=73.28 Aligned_cols=49 Identities=18% Similarity=0.405 Sum_probs=43.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEe
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLV 63 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f 63 (80)
.....|+|.|||+..+..+++.+|..||.+.+|+|+.... .+|||||.|
T Consensus 611 k~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f 662 (725)
T KOG0110|consen 611 KKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDF 662 (725)
T ss_pred cccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeec
Confidence 3357899999999999999999999999999999987522 489999999
No 61
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.66 E-value=5.2e-08 Score=49.83 Aligned_cols=36 Identities=25% Similarity=0.492 Sum_probs=27.9
Q ss_pred HHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhcc
Q psy10279 34 MYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 34 l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
|.++|++||.|.++.+..++ +|+|||+| .+.++|++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f-------~~~~~A~~ 36 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEF-------ASVEDAQK 36 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEE-------SSHHHHHH
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEE-------CCHHHHHH
Confidence 67899999999999887555 69999999 55555543
No 62
>KOG0132|consensus
Probab=98.66 E-value=3.4e-08 Score=72.31 Aligned_cols=44 Identities=20% Similarity=0.436 Sum_probs=40.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEe
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLV 63 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f 63 (80)
+++||||+|+..+++.+|..+|+.||.|.+|.+.. ++|||||..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~---~R~cAfI~M 464 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP---PRGCAFIKM 464 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc---CCceeEEEE
Confidence 58999999999999999999999999999997752 479999999
No 63
>KOG0153|consensus
Probab=98.64 E-value=5.2e-08 Score=66.01 Aligned_cols=51 Identities=25% Similarity=0.282 Sum_probs=44.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
...+|||++|-..+++.+|++.|.+||.|+.+++... +|+|||+|.+.++|
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aA 277 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAA 277 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHH
Confidence 4578999999889999999999999999999987643 57999999666655
No 64
>KOG0109|consensus
Probab=98.64 E-value=2.8e-08 Score=66.17 Aligned_cols=55 Identities=16% Similarity=0.171 Sum_probs=48.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccCh
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNM 73 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~ 73 (80)
+..+.+++||||.+.++..+|+..|.+||++.+|.|+ ++|+||.|+..|.+..+.
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdiv-----kdy~fvh~d~~eda~~ai 129 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIV-----KDYAFVHFDRAEDAVEAI 129 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeee-----cceeEEEEeeccchHHHH
Confidence 3456789999999999999999999999999999988 789999998887775554
No 65
>KOG0124|consensus
Probab=98.60 E-value=1e-07 Score=65.42 Aligned_cols=48 Identities=10% Similarity=0.284 Sum_probs=44.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMK 65 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~ 65 (80)
.+|||..+.++.++++++.+|+.||+|.+|.+.+++. .+|||||+|.+
T Consensus 211 nRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n 261 (544)
T KOG0124|consen 211 NRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNN 261 (544)
T ss_pred heEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEecc
Confidence 6899999999999999999999999999999988766 48999999954
No 66
>KOG4205|consensus
Probab=98.57 E-value=2.1e-07 Score=62.70 Aligned_cols=53 Identities=15% Similarity=0.244 Sum_probs=46.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..++||++||..++++++++.|.+||.|..+.++.|.. .+||+||.|...+++
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sV 152 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSV 152 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEecccccc
Confidence 45899999999999999999999999999988888776 489999999554443
No 67
>KOG0131|consensus
Probab=98.57 E-value=5.9e-08 Score=60.89 Aligned_cols=56 Identities=18% Similarity=0.276 Sum_probs=44.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEE-EEccCC---CCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQI-RIGNTP---DTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~-~l~~~~---~~~G~afv~f~~~~~~ 69 (80)
...+..+||+||.+.+++..|.+.|+.||.+... .++++. .++|||||.|.+.|+.
T Consensus 93 l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 93 LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEAS 152 (203)
T ss_pred ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHH
Confidence 3445899999999999999999999999998762 444443 3589999999665554
No 68
>KOG0116|consensus
Probab=98.57 E-value=1.3e-07 Score=65.90 Aligned_cols=53 Identities=17% Similarity=0.287 Sum_probs=42.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCC---CCCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP---DTRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~---~~~G~afv~f~~~~~~ 69 (80)
...|||+|||++++..+|+++|..||.|+...|.... ....||||+|.+..++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~ 343 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAV 343 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchh
Confidence 3569999999999999999999999999987665422 2238999999665544
No 69
>KOG4208|consensus
Probab=98.50 E-value=4.1e-07 Score=57.94 Aligned_cols=53 Identities=13% Similarity=0.318 Sum_probs=43.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcC-CCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKY-GAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~-G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
...+|+..+|+...+.++...|.+| |.+...++.+.++ ++|||||+|++.+.|
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA 105 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVA 105 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHH
Confidence 3578999999999999999999988 7888888855543 699999999654444
No 70
>smart00361 RRM_1 RNA recognition motif.
Probab=98.49 E-value=2.3e-07 Score=49.61 Aligned_cols=39 Identities=13% Similarity=0.074 Sum_probs=28.9
Q ss_pred HHHHHHHhh----cCCCEEEEE-EccCC-----CCCcEEEEEecccccc
Q psy10279 31 GDEMYDIFG----KYGAIRQIR-IGNTP-----DTRYLTKSLVMKCMIF 69 (80)
Q Consensus 31 ~~~l~~~F~----~~G~i~~~~-l~~~~-----~~~G~afv~f~~~~~~ 69 (80)
+++|.++|+ +||.|.++. +..++ .++|+|||.|.+.++|
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA 50 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDA 50 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHH
Confidence 467888888 999999985 54443 3589999999444444
No 71
>KOG4660|consensus
Probab=98.48 E-value=2.2e-07 Score=65.90 Aligned_cols=54 Identities=30% Similarity=0.525 Sum_probs=45.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhcc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
..++|+|-|||..++.++|..+|+.||+|+.|+.. ...+|..||+| .+..+|++
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t--~~~~~~~~v~F-------yDvR~A~~ 127 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRET--PNKRGIVFVEF-------YDVRDAER 127 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcc--cccCceEEEEE-------eehHhHHH
Confidence 45899999999999999999999999999996543 33589999999 66666654
No 72
>KOG0146|consensus
Probab=98.47 E-value=3.5e-07 Score=60.66 Aligned_cols=56 Identities=16% Similarity=0.205 Sum_probs=48.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccChhhhc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVNMELSD 77 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~~~~a~ 77 (80)
..++.|||..||.+.+..+|...|-+||.|.+.++..|+- +|-|+||.| .|+..|+
T Consensus 283 PeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSf-------DNp~SaQ 341 (371)
T KOG0146|consen 283 PEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSF-------DNPASAQ 341 (371)
T ss_pred CCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEec-------CCchhHH
Confidence 4579999999999999999999999999999988777654 688999999 6665554
No 73
>KOG0106|consensus
Probab=98.44 E-value=1.9e-07 Score=59.99 Aligned_cols=43 Identities=21% Similarity=0.343 Sum_probs=38.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMK 65 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~ 65 (80)
..+|||+||+.+.+.++..+|..||.+.++.+. .||+||+|++
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-----~gf~fv~fed 44 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK-----NGFGFVEFED 44 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee-----cccceeccCc
Confidence 468999999999999999999999999988764 6899999954
No 74
>KOG0110|consensus
Probab=98.42 E-value=2.9e-07 Score=66.84 Aligned_cols=51 Identities=24% Similarity=0.329 Sum_probs=43.4
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC------CCcEEEEEecccccc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD------TRYLTKSLVMKCMIF 69 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~------~~G~afv~f~~~~~~ 69 (80)
+|||.||+++++.+++..+|.+.|.|..+.|...+. +.|||||+|.+.|+|
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A 573 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESA 573 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHH
Confidence 399999999999999999999999999998765443 349999999665555
No 75
>KOG0123|consensus
Probab=98.42 E-value=5e-07 Score=62.14 Aligned_cols=57 Identities=14% Similarity=0.203 Sum_probs=48.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEeccccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~~ 70 (80)
......|||.||+..++.+.|.+.|+.||.|..+++..+.. ++||+||.|...|.+.
T Consensus 267 ~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~ 325 (369)
T KOG0123|consen 267 SLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAK 325 (369)
T ss_pred cccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHH
Confidence 44567899999999999999999999999999999888754 6899999996555553
No 76
>KOG4212|consensus
Probab=98.34 E-value=6e-07 Score=62.83 Aligned_cols=54 Identities=20% Similarity=0.245 Sum_probs=45.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhcc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
..+.|+|+|||++.||+.|++-|..||.+....|+....++| .|.| .++++|+.
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskG--VVrF-------~s~edAEr 588 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKG--VVRF-------FSPEDAER 588 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccc--eEEe-------cCHHHHHH
Confidence 357899999999999999999999999999988876666776 8899 66666654
No 77
>KOG1548|consensus
Probab=98.31 E-value=1.7e-06 Score=58.79 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=47.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEE--------EEEccCCC--CCcEEEEEeccccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQ--------IRIGNTPD--TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------~~l~~~~~--~~G~afv~f~~~~~~~ 70 (80)
+..+..|||+|||.++|-+++.++|++||-|.. |.|-++.. .+|-|.|.|.+.|++-
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVe 197 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVE 197 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHH
Confidence 445678999999999999999999999998864 55555544 5899999999988873
No 78
>KOG0151|consensus
Probab=98.28 E-value=1.6e-06 Score=63.40 Aligned_cols=49 Identities=20% Similarity=0.335 Sum_probs=42.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC------CCcEEEEEec
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD------TRYLTKSLVM 64 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~------~~G~afv~f~ 64 (80)
....+||+||++.++++.|...|+.||+|..+++++.+. .+-||||.|.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafm 227 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFM 227 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeeh
Confidence 347899999999999999999999999999999887543 3579999994
No 79
>KOG4454|consensus
Probab=98.23 E-value=6.2e-07 Score=57.93 Aligned_cols=61 Identities=13% Similarity=0.234 Sum_probs=51.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCC-CcEEEEEeccccccccChh
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDT-RYLTKSLVMKCMIFLVNME 74 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~-~G~afv~f~~~~~~~~~~~ 74 (80)
++..++|||+|+...++++-|.++|-+.|+|.++.|..+..+ .-||||.|.+..++..+.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~ 67 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQ 67 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhh
Confidence 345699999999999999999999999999999998876653 2399999998888755543
No 80
>KOG4661|consensus
Probab=98.16 E-value=3.6e-06 Score=60.76 Aligned_cols=53 Identities=15% Similarity=0.317 Sum_probs=44.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCC---CcEEEEEeccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDT---RYLTKSLVMKCMI 68 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~---~G~afv~f~~~~~ 68 (80)
.++.|||.+|+..+...+|+.||++||+|.-..++.+..+ +-|+||++.+...
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~e 459 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAE 459 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHH
Confidence 4589999999999999999999999999998877766554 5699999954433
No 81
>KOG0533|consensus
Probab=98.13 E-value=6.7e-06 Score=53.82 Aligned_cols=54 Identities=11% Similarity=0.273 Sum_probs=45.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
...+|+|.|||+.++..+|.++|..||.+..+-+..++. +.|.|-|.|...+.|
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA 137 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDA 137 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhH
Confidence 347899999999999999999999999888887777665 579999999655443
No 82
>KOG1190|consensus
Probab=97.98 E-value=7.4e-06 Score=56.93 Aligned_cols=54 Identities=17% Similarity=0.263 Sum_probs=45.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~ 71 (80)
.+++.+.++|||+++++.++-.++.+||.|..+..... +..||++|.+.++|..
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG---knQAflem~d~~sAvt 79 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG---KNQAFLEMADEESAVT 79 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeecc---chhhhhhhcchhhhhh
Confidence 46789999999999999999999999999999866543 3489999987777754
No 83
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.97 E-value=3.7e-05 Score=43.93 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=38.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhc--CCCEEEEEEccCCC---CCcEEEEEecc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGK--YGAIRQIRIGNTPD---TRYLTKSLVMK 65 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~--~G~i~~~~l~~~~~---~~G~afv~f~~ 65 (80)
++|-|+|+|-..+.++|.+++.. .|..--+.++.|-. +.|||||-|.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~ 54 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTS 54 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCC
Confidence 57889999999999999888875 36666677777755 47999999943
No 84
>KOG4211|consensus
Probab=97.96 E-value=2.6e-05 Score=55.12 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=41.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccC-CCCCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNT-PDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~-~~~~G~afv~f~~~~~~ 69 (80)
...|-+.+|||++|+++|.++|+.++ |.++.+.+. .++.|-|||+|...|.+
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv 62 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDV 62 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHH
Confidence 45677789999999999999999887 666666655 66789999999544443
No 85
>KOG4209|consensus
Probab=97.95 E-value=1e-05 Score=52.68 Aligned_cols=56 Identities=9% Similarity=0.095 Sum_probs=47.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~ 70 (80)
.....+||+|+.+.++.+++...|+.||.|..+.+..|+. ++||+||+|.+.+.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~ 157 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVE 157 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhH
Confidence 3457899999999999999999999999999888777655 5899999996655543
No 86
>KOG1457|consensus
Probab=97.94 E-value=1.8e-05 Score=51.42 Aligned_cols=53 Identities=15% Similarity=0.323 Sum_probs=41.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC----CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD----TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~----~~G~afv~f~~~~~~ 69 (80)
-++|||.+||.++...+|+.+|..|.-.+.+.|....+ .+.+||++|.+...|
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A 90 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFA 90 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHH
Confidence 48999999999999999999999997777665544333 357999999654444
No 87
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.93 E-value=2.8e-05 Score=44.91 Aligned_cols=49 Identities=8% Similarity=0.102 Sum_probs=29.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..|+|.+++..++.++|++.|++||.|..|.+... ..-|||.|.+.++|
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G---~~~g~VRf~~~~~A 50 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG---DTEGYVRFKTPEAA 50 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT----SEEEEEESS---H
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC---CCEEEEEECCcchH
Confidence 57889999999999999999999999999887532 24789999555544
No 88
>KOG0129|consensus
Probab=97.93 E-value=2.5e-05 Score=55.40 Aligned_cols=54 Identities=15% Similarity=0.362 Sum_probs=41.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC------CCc---EEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD------TRY---LTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~------~~G---~afv~f~~~~~~ 69 (80)
.-+++||||+||++++++.|...|..||.+. +.+..... .+| |+|+.|++..++
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV 319 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSV 319 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHH
Confidence 3458999999999999999999999999874 44442211 356 999999765554
No 89
>KOG1457|consensus
Probab=97.82 E-value=1.1e-05 Score=52.38 Aligned_cols=57 Identities=18% Similarity=0.169 Sum_probs=44.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhh
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMEL 75 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~ 75 (80)
.+|||.||..++++++|+.+|+.|.....++|...+ +--.||++|++.+.+-.++..
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-g~~vaf~~~~~~~~at~am~~ 267 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-GMPVAFADFEEIEQATDAMNH 267 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-CcceEeecHHHHHHHHHHHHH
Confidence 589999999999999999999999877777665333 335899999776666444433
No 90
>KOG4206|consensus
Probab=97.75 E-value=8.6e-05 Score=47.91 Aligned_cols=53 Identities=15% Similarity=0.308 Sum_probs=44.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMI 68 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~ 68 (80)
..++..+|+.|||.+++.+.+..+|.+|.....++++... +|.|||+|.+...
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~--~~iAfve~~~d~~ 195 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR--SGIAFVEFLSDRQ 195 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC--CceeEEecchhhh
Confidence 3456889999999999999999999999999999887433 7899999965443
No 91
>KOG0147|consensus
Probab=97.70 E-value=1.1e-05 Score=57.42 Aligned_cols=57 Identities=12% Similarity=0.229 Sum_probs=49.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccCh
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVNM 73 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~~ 73 (80)
.+++|+-.|+..+++.+|+++|+.+|+|..|+++.|+. ++|.|||+|-+.+++....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai 238 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI 238 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh
Confidence 47899999999999999999999999999999998876 5899999997777665443
No 92
>KOG0129|consensus
Probab=97.61 E-value=0.00017 Score=51.24 Aligned_cols=58 Identities=17% Similarity=0.393 Sum_probs=48.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhh-cCCCEEEEEEccCCC---CCcEEEEEeccccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFG-KYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~-~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~ 70 (80)
+-++.++||||+||.-++-++|..+|. -||.|..+-|-.|++ ++|-|=|+|.+.-+.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi 427 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYI 427 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHH
Confidence 344569999999999999999999999 799999998888855 6898889986654443
No 93
>KOG4211|consensus
Probab=97.60 E-value=0.00024 Score=50.40 Aligned_cols=57 Identities=14% Similarity=0.209 Sum_probs=43.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEE-EEEccCCC--CCcEEEEEeccccccccChhhhcc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQ-IRIGNTPD--TRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~-~~l~~~~~--~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
.....|-+++||+.+++++|.++|+..-.+.. +.++.+.. +.|=|||.| .+++.|++
T Consensus 101 ~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF-------~sqe~ae~ 160 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQF-------ESQESAEI 160 (510)
T ss_pred CCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEe-------cCHHHHHH
Confidence 34578899999999999999999997655544 45555555 468999999 55555554
No 94
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.54 E-value=0.00049 Score=35.05 Aligned_cols=51 Identities=14% Similarity=0.244 Sum_probs=38.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhccC
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDKL 79 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~~ 79 (80)
++|-|.+.|+...+ .+...|..||+|..+.+. ....+.+|.| .+..+|+++
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~---~~~~~~~l~y-------~~~~~ae~A 52 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP---ESTNWMYLKY-------KSRKDAEKA 52 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC---CCCcEEEEEE-------CCHHHHHhh
Confidence 56778888876654 455688899999998875 2346899999 777777654
No 95
>KOG0226|consensus
Probab=97.50 E-value=0.00015 Score=47.93 Aligned_cols=54 Identities=7% Similarity=0.107 Sum_probs=43.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
...+||+|.|.-+++.+-|...|.+|-....-++.+|++ ++||+||.|.+..++
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~ 245 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADY 245 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHH
Confidence 457899999999999999999999998777666666655 689999999544443
No 96
>KOG0120|consensus
Probab=97.48 E-value=0.00011 Score=52.32 Aligned_cols=49 Identities=12% Similarity=0.386 Sum_probs=43.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEe
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLV 63 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f 63 (80)
.....+||++||...++.++.++...||.+...++..+.. ++||||.+|
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey 338 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEY 338 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeee
Confidence 3457899999999999999999999999999888877654 689999999
No 97
>KOG1855|consensus
Probab=97.43 E-value=0.0001 Score=51.62 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=45.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC----------------CCcEEEEEecccccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD----------------TRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~----------------~~G~afv~f~~~~~~~~ 71 (80)
++++|.+.|||.+-.-+.|.+||+.+|.|..|+|+.-+. ++-+|+|+|+..++|..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~K 301 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARK 301 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHH
Confidence 568999999999988899999999999999999876511 13589999966665543
No 98
>KOG4210|consensus
Probab=97.33 E-value=0.00015 Score=48.46 Aligned_cols=55 Identities=13% Similarity=0.275 Sum_probs=45.2
Q ss_pred CCCCCcEEE-EecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccc
Q psy10279 13 PPEVNRVLY-IRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCM 67 (80)
Q Consensus 13 ~~~~~~~l~-V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~ 67 (80)
......++| |+||++.+++++|+..|..+|.|..++++.+.. .+|+|+|.|...+
T Consensus 180 ~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~ 238 (285)
T KOG4210|consen 180 SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGN 238 (285)
T ss_pred ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhch
Confidence 334455666 999999999999999999999999999887766 3799999995433
No 99
>KOG0106|consensus
Probab=97.22 E-value=0.00022 Score=46.08 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=45.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChh
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNME 74 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~ 74 (80)
.|....+.+.|.|++..+++.+|.+.|.++|.+....+ ..+++||.|+..|++-.+++
T Consensus 94 ~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-----~~~~~~v~Fs~~~da~ra~~ 151 (216)
T KOG0106|consen 94 PPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-----RRNFAFVEFSEQEDAKRALE 151 (216)
T ss_pred CcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh-----hccccceeehhhhhhhhcch
Confidence 33556688999999999999999999999999854433 36899999987777754443
No 100
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.15 E-value=0.0032 Score=35.17 Aligned_cols=47 Identities=17% Similarity=0.346 Sum_probs=30.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKC 66 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~ 66 (80)
|...+..+|+ .|.++...||..+|+.||.|. |.++.| .-|||...+.
T Consensus 6 P~RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d----TSAfV~l~~r 52 (87)
T PF08675_consen 6 PSRDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND----TSAFVALHNR 52 (87)
T ss_dssp -SGCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT----TEEEEEECCC
T ss_pred CCcceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC----CcEEEEeecH
Confidence 3445677777 999999999999999999984 444433 3688888433
No 101
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=96.86 E-value=0.0041 Score=34.86 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=28.9
Q ss_pred cEEEEecCCCCCCHHH----HHHHhhcCC-CEEEEEEccCCCCCcEEEEEeccccccccChhhhcc
Q psy10279 18 RVLYIRNLPYKITGDE----MYDIFGKYG-AIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~----l~~~F~~~G-~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
..|+|.|||.+.+... |+.++..+| .|..|. .|.|+|.| .+.+.|++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF-------~~~~~A~R 54 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRF-------PNQEFAER 54 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEE-------SSHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEe-------CCHHHHHH
Confidence 4689999999988765 566666775 555552 57899999 66555543
No 102
>KOG1190|consensus
Probab=96.60 E-value=0.0053 Score=43.15 Aligned_cols=58 Identities=24% Similarity=0.339 Sum_probs=46.1
Q ss_pred CcEEEEecCCC-CCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhh
Q psy10279 17 NRVLYIRNLPY-KITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELS 76 (80)
Q Consensus 17 ~~~l~V~nLp~-~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a 76 (80)
+..|.|.||.. .+|.+.|.-+|+-||.|.+|.|...+ +--|.|.|.+.-.|..+++..
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL 355 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHL 355 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHh
Confidence 57889999965 58999999999999999999998766 467999996655554444443
No 103
>KOG4676|consensus
Probab=96.52 E-value=0.0044 Score=43.34 Aligned_cols=54 Identities=22% Similarity=0.309 Sum_probs=43.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC------CCcEEEEEecccccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD------TRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~------~~G~afv~f~~~~~~~~ 71 (80)
..|.|.||.+.++.++++.+|+..|.|.+++|..... ....|||-|.+.-++.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~v 67 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTV 67 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeH
Confidence 5899999999999999999999999999998865322 24689999966544433
No 104
>KOG2314|consensus
Probab=96.51 E-value=0.0079 Score=43.80 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=42.7
Q ss_pred CCCcEEEEecCCCCCCH------HHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEeccccccccChhhhcc
Q psy10279 15 EVNRVLYIRNLPYKITG------DEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~------~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
.-...|+|-|+|---.. .-|..+|+++|++....++.+.. ++||.|++| .++.+|++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~-------~~~~~A~~ 120 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEY-------ASMRDAKK 120 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEe-------cChhhHHH
Confidence 34578899999865332 23678899999999998887655 689999999 66655543
No 105
>KOG1365|consensus
Probab=96.34 E-value=0.014 Score=40.90 Aligned_cols=54 Identities=17% Similarity=0.218 Sum_probs=38.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC----CCEEEEE-Ecc-CCCCCcEEEEEeccccccccChhhhcc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKY----GAIRQIR-IGN-TPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~----G~i~~~~-l~~-~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
-.|-.++||++++..++.++|.+- |....+- +.+ |++..|-|||.| ...++|++
T Consensus 162 vivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlf-------a~ee~aq~ 221 (508)
T KOG1365|consen 162 VIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLF-------ACEEDAQF 221 (508)
T ss_pred eEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEe-------cCHHHHHH
Confidence 466778999999999999999732 2223333 333 555679999999 66666654
No 106
>KOG0128|consensus
Probab=96.24 E-value=0.00031 Score=52.52 Aligned_cols=52 Identities=17% Similarity=0.187 Sum_probs=42.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEcc---CCCCCcEEEEEecccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN---TPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~---~~~~~G~afv~f~~~~~~ 69 (80)
.++||+||+..+.+.+|...|..+|.+..+++.. .++.+|.||++|.+.+.+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~ 722 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHA 722 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCch
Confidence 4789999999999999999999999998877652 233689999999554443
No 107
>KOG0128|consensus
Probab=96.22 E-value=0.0031 Score=47.44 Aligned_cols=48 Identities=15% Similarity=0.196 Sum_probs=41.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCC--CCCcEEEEEec
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP--DTRYLTKSLVM 64 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~--~~~G~afv~f~ 64 (80)
...++|.|.|+..|.++++.++.++|.+.+++++..+ .++|.+++.|.
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~ 785 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYN 785 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccceeccCC
Confidence 3678999999999999999999999999998766543 46899999993
No 108
>KOG0105|consensus
Probab=96.13 E-value=0.021 Score=36.60 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=37.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMK 65 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~ 65 (80)
-.|.|.+||...+|++|++...+.|.++...+.+| |++.|+|..
T Consensus 116 ~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD----g~GvV~~~r 159 (241)
T KOG0105|consen 116 YRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD----GVGVVEYLR 159 (241)
T ss_pred eeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc----cceeeeeee
Confidence 57889999999999999999999999988776655 477777743
No 109
>KOG4849|consensus
Probab=96.12 E-value=0.0028 Score=43.88 Aligned_cols=46 Identities=11% Similarity=0.210 Sum_probs=34.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCC--EEEEEEccC---CCCCcEEEEEe
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGA--IRQIRIGNT---PDTRYLTKSLV 63 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~--i~~~~l~~~---~~~~G~afv~f 63 (80)
-.+|||||-|.+|..+|.+....-|- +.++++..+ +.+||||.+..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~ 131 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVL 131 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEe
Confidence 46899999999999999888877663 344444332 33799999987
No 110
>KOG3152|consensus
Probab=96.12 E-value=0.0097 Score=39.48 Aligned_cols=36 Identities=19% Similarity=0.503 Sum_probs=32.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccC
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNT 52 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~ 52 (80)
...||++|||+.+...-|+++|+.||.|-.|.|...
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE 109 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPE 109 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecch
Confidence 367999999999999999999999999999988653
No 111
>KOG4307|consensus
Probab=96.05 E-value=0.0073 Score=45.01 Aligned_cols=62 Identities=19% Similarity=0.175 Sum_probs=47.5
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEE-EEEccCCC--CCcEEEEEecccccccc
Q psy10279 10 VRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQ-IRIGNTPD--TRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~-~~l~~~~~--~~G~afv~f~~~~~~~~ 71 (80)
.+.|-..+..|||..||..+++.++.+.|...-.|++ |.|..... -++.|||.|.+.++++.
T Consensus 427 vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~ 491 (944)
T KOG4307|consen 427 VPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLT 491 (944)
T ss_pred CCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccch
Confidence 3455666789999999999999999999998777777 66654443 36899999966554443
No 112
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.93 E-value=0.013 Score=40.47 Aligned_cols=51 Identities=22% Similarity=0.378 Sum_probs=35.3
Q ss_pred cEEEEecCCCCCCHHH------HHHHhhcCCCEEEEEEccCCC----CCcE--EEEEeccccc
Q psy10279 18 RVLYIRNLPYKITGDE------MYDIFGKYGAIRQIRIGNTPD----TRYL--TKSLVMKCMI 68 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~------l~~~F~~~G~i~~~~l~~~~~----~~G~--afv~f~~~~~ 68 (80)
.-+||-+||+.+..++ -.++|++||.|.+|.+.+... +.+. .||+|..-|.
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~ked 177 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKED 177 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHH
Confidence 4579999998876655 367899999999987754332 1232 3999944333
No 113
>KOG0112|consensus
Probab=95.55 E-value=0.0044 Score=46.96 Aligned_cols=52 Identities=19% Similarity=0.291 Sum_probs=42.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCM 67 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~ 67 (80)
.+++||+|||+..+++.+++..|..+|.+.+|.+-...- ..-|+|+.|...-
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~d 424 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTD 424 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccc
Confidence 468999999999999999999999999999998755432 2358899995433
No 114
>KOG1995|consensus
Probab=95.45 E-value=0.019 Score=39.56 Aligned_cols=52 Identities=15% Similarity=0.231 Sum_probs=41.1
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEE--------EEEccCCC---CCcEEEEEecccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQ--------IRIGNTPD---TRYLTKSLVMKCM 67 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------~~l~~~~~---~~G~afv~f~~~~ 67 (80)
...++||.+||..++++.+.++|.++|.|.. |.|-+++. +||-|.|.|++.-
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~ 127 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPP 127 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChh
Confidence 3468999999999999999999999998853 44444444 5899999995433
No 115
>KOG0112|consensus
Probab=95.40 E-value=0.036 Score=42.24 Aligned_cols=59 Identities=12% Similarity=-0.045 Sum_probs=47.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhh
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELS 76 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a 76 (80)
..++.+++++|+.++....|...|..||.|..|.+-. +..|++|.|+....+....+++
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h---gq~yayi~yes~~~aq~a~~~~ 511 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH---GQPYAYIQYESPPAAQAATHDM 511 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc---CCcceeeecccCccchhhHHHH
Confidence 4467899999999999999999999999999987632 3469999997777665555544
No 116
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=94.94 E-value=0.076 Score=30.46 Aligned_cols=54 Identities=11% Similarity=0.158 Sum_probs=33.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEE-EccC---------CCCCcEEEEEeccccccccChhhhcc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIR-IGNT---------PDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~-l~~~---------~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
.+.|.|-+.|+. ....+.+.|++||.|.+.. +..+ .....+-.|.| .++.+|++
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y-------~~~~~A~r 69 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITY-------DNPLSAQR 69 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEE-------SSHHHHHH
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEEC-------CCHHHHHH
Confidence 467888888888 4566778999999998764 1111 12356999999 66665554
No 117
>KOG1365|consensus
Probab=94.93 E-value=0.024 Score=39.83 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=41.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEE---EEEccCCC--CCcEEEEEeccccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQ---IRIGNTPD--TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~---~~l~~~~~--~~G~afv~f~~~~~~~ 70 (80)
...|-+++||+..+.+++.++|+.|..-.. ++++.+.. +.|-|||+|..+|.+.
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~ 338 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERAR 338 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHH
Confidence 457889999999999999999998865332 55555444 5799999997666653
No 118
>KOG4410|consensus
Probab=94.58 E-value=0.19 Score=34.20 Aligned_cols=58 Identities=12% Similarity=-0.084 Sum_probs=43.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCE-EEEEEccCCCCCcEEEEEeccccccccChhhhcc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAI-RQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i-~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
.-||++|||.++.-.+|+..+.+-|.. .++.+ . ...|-||+.|-+...+.....++++
T Consensus 331 ~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw--k-g~~~k~flh~~~~~~~~~~~~~~~~ 389 (396)
T KOG4410|consen 331 TDIKLTNLSRDIRVKDLKSELRKRECTPMSISW--K-GHFGKCFLHFGNRKGVPSTQDDMDK 389 (396)
T ss_pred cceeeccCccccchHHHHHHHHhcCCCceeEee--e-cCCcceeEecCCccCCCCCchHHHH
Confidence 569999999999999999999887764 23333 2 2467899999887777666555543
No 119
>KOG0115|consensus
Probab=94.57 E-value=0.025 Score=37.60 Aligned_cols=48 Identities=19% Similarity=0.181 Sum_probs=39.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMK 65 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~ 65 (80)
..|||.||+..++.+.+..-|+.||.|..-.+..|.. ..|=++|.|.+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~ 81 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAK 81 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhc
Confidence 7899999999999999999999999998755554443 44677888854
No 120
>KOG1456|consensus
Probab=93.93 E-value=0.3 Score=34.42 Aligned_cols=52 Identities=10% Similarity=0.101 Sum_probs=42.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.++-.|.|++|-..+++.+|.+..+.||.|..+..+.. +..+.|+|++.+.+
T Consensus 29 ~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~---~r~alvefedi~~a 80 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH---KRQALVEFEDIEGA 80 (494)
T ss_pred CCCceEEEeccccccchhHHHHHHhcCCceEEEEeccc---cceeeeeeccccch
Confidence 34578999999999999999999999999998866533 34789999765554
No 121
>KOG4307|consensus
Probab=93.69 E-value=0.13 Score=38.69 Aligned_cols=58 Identities=19% Similarity=0.144 Sum_probs=42.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEE-EEEcc--CCCCCcEEEEEeccccccccChhh
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQ-IRIGN--TPDTRYLTKSLVMKCMIFLVNMEL 75 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~-~~l~~--~~~~~G~afv~f~~~~~~~~~~~~ 75 (80)
+.|-+.|+|++++-+|+.++|..|-.+.. |.+.. ++...|-|.|.|+..+.|-.+.++
T Consensus 868 ~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pTGe~mvAfes~~eAr~A~~d 928 (944)
T KOG4307|consen 868 RVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPTGECMVAFESQEEARRASMD 928 (944)
T ss_pred eEEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcccceeEeecCHHHHHhhhhc
Confidence 47889999999999999999999876643 44433 333579999999665555444433
No 122
>KOG1456|consensus
Probab=92.86 E-value=0.59 Score=33.01 Aligned_cols=49 Identities=14% Similarity=0.270 Sum_probs=40.8
Q ss_pred CCcEEEEecCCCC-CCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccc
Q psy10279 16 VNRVLYIRNLPYK-ITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKC 66 (80)
Q Consensus 16 ~~~~l~V~nLp~~-~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~ 66 (80)
+++.+-|.+|... ++-+.|..+|-.||.|.+|..++.+ .|-|.|+.-+.
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk--~gtamVemgd~ 335 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK--PGTAMVEMGDA 335 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc--cceeEEEcCcH
Confidence 4678899999876 5778899999999999999998665 68899998443
No 123
>KOG0120|consensus
Probab=92.61 E-value=0.2 Score=36.18 Aligned_cols=39 Identities=23% Similarity=0.277 Sum_probs=29.1
Q ss_pred HHHHhhcCCCEEEEEEccC-CC-----CCcEEEEEeccccccccChhhhccC
Q psy10279 34 MYDIFGKYGAIRQIRIGNT-PD-----TRYLTKSLVMKCMIFLVNMELSDKL 79 (80)
Q Consensus 34 l~~~F~~~G~i~~~~l~~~-~~-----~~G~afv~f~~~~~~~~~~~~a~~~ 79 (80)
++.-+++||.|..|.+..+ .. +-|-.||+| .+.++++++
T Consensus 426 vr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVef-------as~ed~qrA 470 (500)
T KOG0120|consen 426 VRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEF-------ADTEDSQRA 470 (500)
T ss_pred HHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEe-------cChHHHHHH
Confidence 4455778999999998876 32 358899999 777776653
No 124
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=92.60 E-value=0.2 Score=31.35 Aligned_cols=53 Identities=13% Similarity=0.007 Sum_probs=30.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhc-CCCE---EEEEEccCCC-----CCcEEEEEeccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGK-YGAI---RQIRIGNTPD-----TRYLTKSLVMKCMI 68 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i---~~~~l~~~~~-----~~G~afv~f~~~~~ 68 (80)
...+|-|++||+..+++++.+..+. ++.- ..+.-..... .-.-|||.|.+.+.
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~ 67 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPED 67 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHH
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHH
Confidence 3468999999999999999887766 5655 2332111111 13579999955444
No 125
>KOG2416|consensus
Probab=91.30 E-value=0.15 Score=37.71 Aligned_cols=51 Identities=16% Similarity=0.133 Sum_probs=38.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhh-cCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFG-KYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~-~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+..|||.||-...|.-+|+.+++ ..|.|.+.+| ..-+.-|||.|...+.|
T Consensus 443 ~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm---DkIKShCyV~yss~eEA 494 (718)
T KOG2416|consen 443 PSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM---DKIKSHCYVSYSSVEEA 494 (718)
T ss_pred ccceEeeecccccchHHHHHHHHhhccCchHHHHH---HHhhcceeEecccHHHH
Confidence 457899999999999999999999 5666666532 12356799999554444
No 126
>KOG1548|consensus
Probab=91.02 E-value=0.42 Score=33.17 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=39.6
Q ss_pred CCcEEEEecCCC----CCC-------HHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhc
Q psy10279 16 VNRVLYIRNLPY----KIT-------GDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSD 77 (80)
Q Consensus 16 ~~~~l~V~nLp~----~~~-------~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~ 77 (80)
..++|.+.|+-. ..+ .++|.+-..+||.|.+|. +.++-+.|.+-|.| .+.+.|+
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vv-v~d~hPdGvvtV~f-------~n~eeA~ 328 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVV-VYDRHPDGVVTVSF-------RNNEEAD 328 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEE-EeccCCCceeEEEe-------CChHHHH
Confidence 357898999853 233 345566688999999985 45666789999999 6666665
No 127
>KOG2591|consensus
Probab=89.89 E-value=1 Score=33.32 Aligned_cols=51 Identities=6% Similarity=0.036 Sum_probs=38.8
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhc--CCCEEEEEEccCCCCCcEEEEEeccccccccChhhhcc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGK--YGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~--~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
.+.|.++-||..+..++++.||.. +-++.+|...... -.||+| .+-.||++
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----nWyITf-------esd~DAQq 227 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----NWYITF-------ESDTDAQQ 227 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----ceEEEe-------ecchhHHH
Confidence 356677999999999999999984 7778888765332 369999 66666654
No 128
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=88.76 E-value=2.7 Score=26.03 Aligned_cols=49 Identities=10% Similarity=0.181 Sum_probs=34.2
Q ss_pred CcEEEEecCCCCCCH-HH---HHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITG-DE---MYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~-~~---l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
-.+|-|+-|..++.. +| +...++.||+|.++.+. ++.-|.|+|.+..+|
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SA 138 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSA 138 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHH
Confidence 367778877776643 33 44556789999998764 356799999665554
No 129
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=87.33 E-value=4.1 Score=23.70 Aligned_cols=53 Identities=23% Similarity=0.233 Sum_probs=32.9
Q ss_pred CCCCCCcEEEEecCCC-CCCHHHHHHHhhcC-CCEEEEEEccCCC-CCcEEEEEec
Q psy10279 12 LPPEVNRVLYIRNLPY-KITGDEMYDIFGKY-GAIRQIRIGNTPD-TRYLTKSLVM 64 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~-~~~~~~l~~~F~~~-G~i~~~~l~~~~~-~~G~afv~f~ 64 (80)
.+...+..+.|--.|. -++.++|..+...+ ..|..+++.+|.. ++-.+.+.|.
T Consensus 7 ~~~~~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~ 62 (110)
T PF07576_consen 7 LPDERRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFR 62 (110)
T ss_pred CCCCCCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEEC
Confidence 3444445555544454 45556665554444 4566789988876 4678899993
No 130
>KOG2253|consensus
Probab=86.63 E-value=0.35 Score=35.95 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=41.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccCh
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNM 73 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~ 73 (80)
++.-++||+|+...++..-+..+...+|.|.++... + |||..|.+.+.++.+.
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~-----~-fgf~~f~~~~~~~ra~ 90 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD-----K-FGFCEFLKHIGDLRAS 90 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh-----h-hcccchhhHHHHHHHH
Confidence 345789999999999999999999999998776433 1 8999997766665444
No 131
>KOG2193|consensus
Probab=85.55 E-value=0.82 Score=32.82 Aligned_cols=43 Identities=21% Similarity=0.218 Sum_probs=31.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCM 67 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~ 67 (80)
.+|++||.+..+..+|..+|+..- +...+. -.||+|+.+.+.-
T Consensus 3 klyignL~p~~~psdl~svfg~ak------~~~~g~fl~k~gyafvd~pdq~ 48 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAK------IPGSGQFLVKSGYAFVDCPDQQ 48 (584)
T ss_pred cccccccCCCCChHHHHHHhcccc------CCCCcceeeecceeeccCCchh
Confidence 589999999999999999998541 111111 1589999985543
No 132
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=85.35 E-value=3.8 Score=21.48 Aligned_cols=44 Identities=16% Similarity=0.250 Sum_probs=30.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC----CCEEEEEEccCCCCCcEEEEEecccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKY----GAIRQIRIGNTPDTRYLTKSLVMKCM 67 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~----G~i~~~~l~~~~~~~G~afv~f~~~~ 67 (80)
..|+|.++.. .+.++++.+|..| ++ ..|.+..|. -|-|.|.+.+
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~~~~-~~IEWIdDt----ScNvvf~d~~ 53 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDEEGP-FRIEWIDDT----SCNVVFKDEE 53 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhcccCCC-ceEEEecCC----cEEEEECCHH
Confidence 5789999854 7788899999988 43 356666554 4788884333
No 133
>KOG0804|consensus
Probab=84.72 E-value=3.1 Score=30.04 Aligned_cols=53 Identities=19% Similarity=0.234 Sum_probs=42.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcC-CCEEEEEEccCCCC-CcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKY-GAIRQIRIGNTPDT-RYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~-G~i~~~~l~~~~~~-~G~afv~f~~~~~~ 69 (80)
+..|+|-.+|..++..||-.+...+ -.|..+++++|+.+ +-...|.|.+.++|
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da 128 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADA 128 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhH
Confidence 6889999999999999999888865 45778999988774 56789999555444
No 134
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=82.57 E-value=2.4 Score=28.93 Aligned_cols=37 Identities=24% Similarity=0.345 Sum_probs=33.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCC
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP 53 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~ 53 (80)
.|.|...|+..+++-..+...|-+||+|++|.+..+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSN 51 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCC
Confidence 5778889999999999999999999999999998765
No 135
>KOG2891|consensus
Probab=82.41 E-value=3 Score=28.61 Aligned_cols=40 Identities=25% Similarity=0.449 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEecCCCC------------CCHHHHHHHhhcCCCEEEEEEcc
Q psy10279 12 LPPEVNRVLYIRNLPYK------------ITGDEMYDIFGKYGAIRQIRIGN 51 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~------------~~~~~l~~~F~~~G~i~~~~l~~ 51 (80)
.|.....+||+.+||.. -+++-|...|..||.|..|.|+.
T Consensus 144 kpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 144 KPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34555678888888853 35667999999999999988754
No 136
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=82.27 E-value=4.3 Score=21.50 Aligned_cols=38 Identities=11% Similarity=0.115 Sum_probs=26.4
Q ss_pred CCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhcc
Q psy10279 28 KITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 28 ~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
.++-.+++..+.+|+-. +| ..|+ .|| ||.| .+.++|++
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~I--~~d~--tGf-YIvF-------~~~~Ea~r 48 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-RI--RDDR--TGF-YIVF-------NDSKEAER 48 (66)
T ss_pred CccHHHHHHHHhcCCcc-eE--EecC--CEE-EEEE-------CChHHHHH
Confidence 46778999999998853 33 3333 577 9999 77766653
No 137
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=82.07 E-value=1.3 Score=25.96 Aligned_cols=47 Identities=13% Similarity=0.222 Sum_probs=23.9
Q ss_pred EEEEecCCCC---------CCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecc
Q psy10279 19 VLYIRNLPYK---------ITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMK 65 (80)
Q Consensus 19 ~l~V~nLp~~---------~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~ 65 (80)
++.|-|+|.. .+.+.|.+.|..|..+.-..+-......|++.|.|.+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~ 65 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNK 65 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--S
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECC
Confidence 4455666543 3567899999999887543333333357999999954
No 138
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=79.72 E-value=2.6 Score=25.83 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=27.4
Q ss_pred HHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccCh
Q psy10279 33 EMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNM 73 (80)
Q Consensus 33 ~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~ 73 (80)
+|.+.|..||.+.-+|+. .+.-+|+|.+.++|+...
T Consensus 52 ~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaal 87 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAAL 87 (146)
T ss_dssp HHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHH
T ss_pred HHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHH
Confidence 677888899999888876 346799998888776554
No 139
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=78.52 E-value=6.1 Score=22.07 Aligned_cols=47 Identities=6% Similarity=0.043 Sum_probs=30.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEe
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLV 63 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f 63 (80)
..-+||||++..+-+.--..+.+..+.-.-+-+-.+....||+|-+.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~neqG~~~~t~ 71 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDNNEQGFDFRTL 71 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccCCCCCEEEEEe
Confidence 45699999998887765555555444433333334444679999887
No 140
>KOG2202|consensus
Probab=76.63 E-value=0.5 Score=31.45 Aligned_cols=37 Identities=11% Similarity=0.076 Sum_probs=24.2
Q ss_pred HHHHHhh-cCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 33 EMYDIFG-KYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 33 ~l~~~F~-~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
++...|. +||.|+++.+..+.. ..|-+||.|...|++
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~a 123 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDA 123 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHH
Confidence 3444445 899999986554332 479999999444433
No 141
>KOG4210|consensus
Probab=75.63 E-value=1.3 Score=29.89 Aligned_cols=57 Identities=11% Similarity=0.062 Sum_probs=41.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCC---CCCcEEEEEeccccccccC
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP---DTRYLTKSLVMKCMIFLVN 72 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~---~~~G~afv~f~~~~~~~~~ 72 (80)
...++|++++.+.+.+.+...++..+|........... .++|++.+.|..-+.+-.+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~ 146 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAA 146 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHH
Confidence 35789999999999999888888899977665443322 2589999999655444333
No 142
>KOG4285|consensus
Probab=73.74 E-value=21 Score=24.75 Aligned_cols=51 Identities=8% Similarity=0.094 Sum_probs=35.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhcc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
..+|-|-+.|+.-. .-+..+|.+||.|.+.... .+..+-+|.| .+.-+|+|
T Consensus 197 D~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~---~ngNwMhirY-------ssr~~A~K 247 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP---SNGNWMHIRY-------SSRTHAQK 247 (350)
T ss_pred cceEEEeccCccch-hHHHHHHHhhCeeeeeecC---CCCceEEEEe-------cchhHHHH
Confidence 35666777776544 4566889999999886533 2345889999 66666655
No 143
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=70.70 E-value=8.1 Score=25.83 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=24.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~ 50 (80)
....|+|||+.++..-+..++...-.+....++
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M 128 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLM 128 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEE
Confidence 345689999999999999998765554444443
No 144
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=69.75 E-value=9.6 Score=21.79 Aligned_cols=48 Identities=6% Similarity=-0.096 Sum_probs=27.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEec
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVM 64 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~ 64 (80)
..-+|||+++..+-+.--..+-+.++.-.-+-+-.++.-.||+|-++-
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~~~eqG~~~~t~G 74 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWATNTESGFEFQTFG 74 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcCCCCCCcEEEecC
Confidence 355999998887765543344443433222222233334589888873
No 145
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=68.75 E-value=3.5 Score=23.12 Aligned_cols=24 Identities=17% Similarity=0.398 Sum_probs=20.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhh
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFG 39 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~ 39 (80)
+.++|.|.|||...++++|++...
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 458899999999999999887653
No 146
>KOG2318|consensus
Probab=66.28 E-value=15 Score=27.49 Aligned_cols=37 Identities=19% Similarity=0.519 Sum_probs=29.7
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHhhcC----CCEEEEEEc
Q psy10279 14 PEVNRVLYIRNLPYK-ITGDEMYDIFGKY----GAIRQIRIG 50 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~-~~~~~l~~~F~~~----G~i~~~~l~ 50 (80)
...+++|-|.||.|. +...+|.-+|..| |.|.+|.|.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IY 212 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIY 212 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEec
Confidence 345688999999997 6888999998876 588887664
No 147
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=65.73 E-value=9.2 Score=20.22 Aligned_cols=31 Identities=6% Similarity=0.001 Sum_probs=23.4
Q ss_pred HHHHHHHhhcCCCEEEEEEccCCC-CCcEEEE
Q psy10279 31 GDEMYDIFGKYGAIRQIRIGNTPD-TRYLTKS 61 (80)
Q Consensus 31 ~~~l~~~F~~~G~i~~~~l~~~~~-~~G~afv 61 (80)
+.+|.+.|-+-..|.++.|...+. .+|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 446778888888899988876665 5677776
No 148
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=63.96 E-value=12 Score=19.66 Aligned_cols=19 Identities=21% Similarity=0.489 Sum_probs=15.7
Q ss_pred HHHHHHhhcCCCEEEEEEc
Q psy10279 32 DEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 32 ~~l~~~F~~~G~i~~~~l~ 50 (80)
.++++.|+..|.|.-+.+.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 5789999999999876653
No 149
>KOG4574|consensus
Probab=62.42 E-value=2.2 Score=33.05 Aligned_cols=56 Identities=7% Similarity=0.088 Sum_probs=41.9
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSD 77 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~ 77 (80)
+.++.|.+-..+...|..+|.+||.+.+.+..++- ..|.|.|...|+++.+.+.-+
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~---N~alvs~~s~~sai~a~dAl~ 355 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL---NMALVSFSSVESAILALDALQ 355 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccc---cchhhhhHHHHHHHHhhhhhc
Confidence 44555666677888999999999999998765442 478999988888776655433
No 150
>KOG4454|consensus
Probab=59.98 E-value=1.8 Score=28.54 Aligned_cols=49 Identities=27% Similarity=0.428 Sum_probs=39.1
Q ss_pred cEEEEec----CCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEeccc
Q psy10279 18 RVLYIRN----LPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKC 66 (80)
Q Consensus 18 ~~l~V~n----Lp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~ 66 (80)
++++.|| |....+++.+...|+..|.+..+++..+.. ++.++|++|...
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~ 135 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRL 135 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhh
Confidence 5677777 777788999999999999999998877665 567788887443
No 151
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=59.88 E-value=25 Score=21.56 Aligned_cols=40 Identities=30% Similarity=0.487 Sum_probs=32.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCC
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP 53 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~ 53 (80)
......+++++++..++..++...|..+|.+....+....
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 222 LEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred ccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 3456789999999999999999999999999766555433
No 152
>KOG1996|consensus
Probab=58.33 E-value=14 Score=25.52 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=29.8
Q ss_pred HHHHHHhhcCCCEEEEEEccCCCC----CcEEEEEeccccccccCh
Q psy10279 32 DEMYDIFGKYGAIRQIRIGNTPDT----RYLTKSLVMKCMIFLVNM 73 (80)
Q Consensus 32 ~~l~~~F~~~G~i~~~~l~~~~~~----~G~afv~f~~~~~~~~~~ 73 (80)
++..+-..+||.|..|-|...+.. .---||+|+..++++.+.
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~ 346 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAV 346 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHH
Confidence 456777889999999877665542 235699997777665544
No 153
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=57.90 E-value=22 Score=19.91 Aligned_cols=47 Identities=2% Similarity=-0.151 Sum_probs=25.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhc-CCCEEEEEEccCCCCCcEEEEEe
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGK-YGAIRQIRIGNTPDTRYLTKSLV 63 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~~~l~~~~~~~G~afv~f 63 (80)
..-+|||+++..+-+.--..+-+. .+.-.-+-+-.+++..||.|-++
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~~~~e~G~~~~t~ 72 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWSSNTCPGFEFFTL 72 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEeCCCCCCcEEEec
Confidence 355999998877655433333222 23222222223344468999887
No 154
>KOG2068|consensus
Probab=56.00 E-value=7.5 Score=26.90 Aligned_cols=52 Identities=19% Similarity=0.381 Sum_probs=35.0
Q ss_pred cEEEEecCCCCCCHHH-H--HHHhhcCCCEEEEEEccCCC---C---CcEEEEEecccccc
Q psy10279 18 RVLYIRNLPYKITGDE-M--YDIFGKYGAIRQIRIGNTPD---T---RYLTKSLVMKCMIF 69 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~-l--~~~F~~~G~i~~~~l~~~~~---~---~G~afv~f~~~~~~ 69 (80)
..+||-+|+.....+. | .+.|++||.|.++....+.. + .--++|+|+..|.|
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda 138 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDA 138 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhh
Confidence 4578888887764443 3 45688999999998776652 1 12489999664444
No 155
>KOG4660|consensus
Probab=55.54 E-value=14 Score=27.29 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=22.9
Q ss_pred EEEecCCCCCCHHHHHHHhh-cCCCEEEEEEccCCC---CCcEEEEEecc
Q psy10279 20 LYIRNLPYKITGDEMYDIFG-KYGAIRQIRIGNTPD---TRYLTKSLVMK 65 (80)
Q Consensus 20 l~V~nLp~~~~~~~l~~~F~-~~G~i~~~~l~~~~~---~~G~afv~f~~ 65 (80)
+-|.|+|...|...|.+.-. ..|.-.-+.++.|=. +.|||||.|..
T Consensus 391 ~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~s 440 (549)
T KOG4660|consen 391 LMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTS 440 (549)
T ss_pred hHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecC
Confidence 33444444444333322211 234444455555533 46999999933
No 156
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=54.75 E-value=15 Score=18.51 Aligned_cols=20 Identities=0% Similarity=-0.175 Sum_probs=11.3
Q ss_pred CCcEEEEEecc-ccccccChh
Q psy10279 55 TRYLTKSLVMK-CMIFLVNME 74 (80)
Q Consensus 55 ~~G~afv~f~~-~~~~~~~~~ 74 (80)
.+|||||..++ .++.+...+
T Consensus 7 ~~GfGFv~~~~~~~DifIp~~ 27 (58)
T PF08206_consen 7 PKGFGFVIPDDGGEDIFIPPR 27 (58)
T ss_dssp SSS-EEEEECT-TEEEEE-HH
T ss_pred cCCCEEEEECCCCCCEEECHH
Confidence 47999999875 444433333
No 157
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=54.53 E-value=11 Score=17.60 Aligned_cols=17 Identities=12% Similarity=0.370 Sum_probs=10.2
Q ss_pred CCCCHHHHHHHhhcCCC
Q psy10279 27 YKITGDEMYDIFGKYGA 43 (80)
Q Consensus 27 ~~~~~~~l~~~F~~~G~ 43 (80)
.++++++|+++|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 35788999999987653
No 158
>KOG4008|consensus
Probab=54.35 E-value=14 Score=24.68 Aligned_cols=33 Identities=15% Similarity=0.423 Sum_probs=27.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEE
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQI 47 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~ 47 (80)
....++|+-|+|...+++.|.++.+..|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 345789999999999999999999998865543
No 159
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=54.11 E-value=17 Score=23.79 Aligned_cols=30 Identities=27% Similarity=0.658 Sum_probs=23.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhh--cCCCEEE
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFG--KYGAIRQ 46 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~--~~G~i~~ 46 (80)
...+.|+|||+.++..-+..++. .+|...-
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~ 128 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRM 128 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccce
Confidence 35678999999999998888876 5665443
No 160
>KOG4676|consensus
Probab=52.45 E-value=1.4 Score=31.34 Aligned_cols=47 Identities=13% Similarity=0.053 Sum_probs=36.1
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMK 65 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~ 65 (80)
++++|++|+-.+-..++-+.|..+|.+...++..... .-+|-+.|.+
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~-s~~c~~sf~~ 198 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTASKSR-SSSCSHSFRK 198 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCC-CcchhhhHhh
Confidence 7899999999999999999999999988766553322 2355577743
No 161
>cd01612 APG12_C Ubiquitin-like domain of APG12. APG12_C The carboxy-terminal ubiquitin-like domain of APG12. Autophagy is a process in which cytoplasmic components are delivered to the lysosome/vacuole for degradation. Autophagy requires a ubiquitin-like protein conjugation system, in which APG12 is covalently bound to APG5.
Probab=52.35 E-value=39 Score=18.66 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=27.0
Q ss_pred CCCCCCCcEEEEecC-CCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccc
Q psy10279 11 RLPPEVNRVLYIRNL-PYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMI 68 (80)
Q Consensus 11 ~~~~~~~~~l~V~nL-p~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~ 68 (80)
.+.+...--+||+|- ++. ..+.+.+++..|+. .|+=+|.|...++
T Consensus 40 ~l~~~~slflyvnn~f~p~-~d~~~g~LY~~~~~------------dGfLyi~Ys~~~a 85 (87)
T cd01612 40 KLKASDSLFLYINNSFAPS-PDENVGNLYRCFGT------------NGELIVSYCKTVA 85 (87)
T ss_pred CCCccCeEEEEECCccCCC-chhHHHHHHHhcCC------------CCEEEEEEeCccc
Confidence 345555667899883 333 33566777777642 3667777754443
No 162
>COG5353 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=51.66 E-value=57 Score=20.29 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=35.7
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhc---CCCEEEEEEccCCC------------CCc-EEEEEec
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGK---YGAIRQIRIGNTPD------------TRY-LTKSLVM 64 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~---~G~i~~~~l~~~~~------------~~G-~afv~f~ 64 (80)
...+++..++..+++++-+++-++ -+.+..+++.+.++ .++ |-+|.|+
T Consensus 87 ~~KI~~k~asqGISe~~a~~~i~kE~~~~e~~~V~Lg~e~~~PiWEV~y~dkeg~~s~~~vdFe 150 (161)
T COG5353 87 DGKIYSKKASQGISEEDARAIISKEKAVKEIKSVTLGREKEKPIWEVTYLDKEGRLSFYYVDFE 150 (161)
T ss_pred CCeEEEEehhcCCCHHHHHHHHhhhccccceeEEEEEeeCCceeEEEeecCccCcceEEEEEec
Confidence 378999999999999988888775 45667777765433 234 7788883
No 163
>KOG2135|consensus
Probab=49.19 E-value=11 Score=27.51 Aligned_cols=44 Identities=16% Similarity=0.326 Sum_probs=31.5
Q ss_pred cEEEEecCCCCC-CHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEec
Q psy10279 18 RVLYIRNLPYKI-TGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVM 64 (80)
Q Consensus 18 ~~l~V~nLp~~~-~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~ 64 (80)
+.+-+...|+.. +..+|...|.+||.|..|++-.. .--|.|+|.
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~ 417 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFK 417 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeee
Confidence 455555666665 55789999999999999876433 235678884
No 164
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=48.53 E-value=30 Score=22.83 Aligned_cols=22 Identities=27% Similarity=0.614 Sum_probs=18.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGK 40 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~ 40 (80)
.+.|+|+|+.++..-+..+...
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~ 128 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEE 128 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhc
Confidence 5679999999998888888753
No 165
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=48.49 E-value=27 Score=23.57 Aligned_cols=28 Identities=18% Similarity=0.449 Sum_probs=20.8
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEE
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQ 46 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~ 46 (80)
.+.|+|||+.++...+..++.....+..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~ 130 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRC 130 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCce
Confidence 3678999999999988888864334443
No 166
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=48.06 E-value=6.3 Score=20.96 Aligned_cols=25 Identities=12% Similarity=0.190 Sum_probs=17.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhh
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFG 39 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~ 39 (80)
..++.+|||.+|..+-.+.-..++.
T Consensus 25 ~tSr~vflG~IP~~W~~~~~~~~~k 49 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDHRKSWYK 49 (67)
T ss_pred HcCceEEECCCChHHHHcCcchHHH
Confidence 3568999999998876655444443
No 167
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=45.98 E-value=49 Score=19.20 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=27.9
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMI 68 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~ 68 (80)
.+++..+--|||+|- -.-....+.+++..|+.- -||=++.|...++
T Consensus 65 ~l~~~~slfl~Vn~~-~p~~~~~~~~lY~~~kd~-----------DGfLyl~Ys~~~t 110 (112)
T cd01611 65 QLRPEKALFLFVNNS-LPPTSATMSQLYEEHKDE-----------DGFLYMTYSSEET 110 (112)
T ss_pred CCCccceEEEEECCc-cCCchhHHHHHHHHhCCC-----------CCEEEEEEecccc
Confidence 345555566788882 222445677777777641 3677888855544
No 168
>PF06613 KorB_C: KorB C-terminal beta-barrel domain; InterPro: IPR010575 This domain is found in several KorB transcriptional repressor proteins. The korB gene is a major regulatory element in the replication and maintenance of broad host-range plasmid RK2. It negatively controls the replication gene trfA, the host-lethal determinants kilA and kilB, and the korA-korB operon []. This family is found in conjunction with IPR003115 from INTERPRO.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1IGQ_B 1IGU_A.
Probab=44.46 E-value=34 Score=17.85 Aligned_cols=19 Identities=11% Similarity=-0.153 Sum_probs=12.2
Q ss_pred EEEccCCC--CCcEEEEEecc
Q psy10279 47 IRIGNTPD--TRYLTKSLVMK 65 (80)
Q Consensus 47 ~~l~~~~~--~~G~afv~f~~ 65 (80)
.+++.+++ +.|+++|.|++
T Consensus 20 arllLnrRps~~G~~WiKyED 40 (60)
T PF06613_consen 20 ARLLLNRRPSSEGLAWIKYED 40 (60)
T ss_dssp EEE-TTB--SSTTEEEEEETT
T ss_pred hhhhhccCCCcCCeEEEEEcc
Confidence 44555544 57999999965
No 169
>PF15063 TC1: Thyroid cancer protein 1
Probab=43.40 E-value=16 Score=20.01 Aligned_cols=29 Identities=21% Similarity=0.219 Sum_probs=24.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCE
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAI 44 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i 44 (80)
..++--+.|+-.+++...|..+|.+-|.-
T Consensus 24 ~~RKkasaNIFe~vn~~qlqrLF~~sGD~ 52 (79)
T PF15063_consen 24 ASRKKASANIFENVNLDQLQRLFQKSGDK 52 (79)
T ss_pred HHhhhhhhhhhhccCHHHHHHHHHHccch
Confidence 34666788999999999999999998864
No 170
>cd04458 CSP_CDS Cold-Shock Protein (CSP) contains an S1-like cold-shock domain (CSD) that is found in eukaryotes, prokaryotes, and archaea. CSP's include the major cold-shock proteins CspA and CspB in bacteria and the eukaryotic gene regulatory factor Y-box protein. CSP expression is up-regulated by an abrupt drop in growth temperature. CSP's are also expressed under normal condition at lower level. The function of cold-shock proteins is not fully understood. They preferentially bind poly-pyrimidine region of single-stranded RNA and DNA. CSP's are thought to bind mRNA and regulate ribosomal translation, mRNA degradation, and the rate of transcription termination. The human Y-box protein, which contains a CSD, regulates transcription and translation of genes that contain the Y-box sequence in their promoters. This specific ssDNA-binding properties of CSD are required for the binding of Y-box protein to the promoter's Y-box sequence, thereby regulating transcription.
Probab=42.34 E-value=27 Score=17.65 Aligned_cols=11 Identities=0% Similarity=-0.336 Sum_probs=8.0
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+|||||.=.+
T Consensus 11 ~kGfGFI~~~~ 21 (65)
T cd04458 11 EKGFGFITPDD 21 (65)
T ss_pred CCCeEEEecCC
Confidence 37899988654
No 171
>PTZ00380 microtubule-associated protein (MAP); Provisional
Probab=41.88 E-value=35 Score=20.27 Aligned_cols=46 Identities=13% Similarity=-0.068 Sum_probs=27.3
Q ss_pred CCCCCCCcEEEEec-CCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 11 RLPPEVNRVLYIRN-LPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 11 ~~~~~~~~~l~V~n-Lp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
.+++.. --|||.| ||.. ...+.+++.++.. --||=||.|...+.+.
T Consensus 65 ~l~~~k-~flfVnn~lp~~--s~~mg~lYe~~KD-----------eDGFLYi~Ys~e~tFG 111 (121)
T PTZ00380 65 GTSAKK-VTLAIEGSTPAV--TATVGDIADACKR-----------DDGFLYVSVRTEQAMG 111 (121)
T ss_pred CCChhH-EEEEECCccCCc--cchHHHHHHHhcC-----------CCCeEEEEEccccccc
Confidence 445554 5677777 4542 2345555555432 1478889987777664
No 172
>PF00313 CSD: 'Cold-shock' DNA-binding domain; InterPro: IPR002059 When Escherichia coli is exposed to a temperature drop from 37 to 10 degrees centigrade, a 4-5 hour lag phase occurs, after which growth is resumed at a reduced rate []. During the lag phase, the expression of around 13 proteins, which contain specific DNA-binding regions [], is increased 2-10 fold. These so-called 'cold shock' proteins are thought to help the cell to survive in temperatures lower than optimum growth temperature, by contrast with heat shock proteins, which help the cell to survive in temperatures greater than the optimum, possibly by condensation of the chromosome and organisation of the prokaryotic nucleoid []. A conserved domain of about 70 amino acids has been found in prokaryotic and eukaryotic DNA-binding proteins [, , ]. This domain is known as the 'cold-shock domain' (CSD), part of which is highly similar [] to the RNP-1 RNA-binding motif.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1HZC_A 1I5F_A 1HZ9_B 1C9O_B 1HZB_B 1HZA_A 2HAX_B 2L15_A 2LSS_A 3I2Z_B ....
Probab=41.73 E-value=23 Score=17.98 Aligned_cols=12 Identities=0% Similarity=-0.396 Sum_probs=8.9
Q ss_pred CCcEEEEEeccc
Q psy10279 55 TRYLTKSLVMKC 66 (80)
Q Consensus 55 ~~G~afv~f~~~ 66 (80)
.+|||||.-...
T Consensus 11 ~kgyGFI~~~~~ 22 (66)
T PF00313_consen 11 EKGYGFITSDDG 22 (66)
T ss_dssp TTTEEEEEETTS
T ss_pred CCCceEEEEccc
Confidence 378999988543
No 173
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=40.95 E-value=44 Score=15.93 Aligned_cols=27 Identities=19% Similarity=0.159 Sum_probs=21.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCE
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAI 44 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i 44 (80)
..+++.+.....+..+|.++...+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467777776678889999999998873
No 174
>PRK09937 stationary phase/starvation inducible regulatory protein CspD; Provisional
Probab=40.52 E-value=23 Score=18.98 Aligned_cols=9 Identities=0% Similarity=-0.300 Sum_probs=6.9
Q ss_pred CCcEEEEEe
Q psy10279 55 TRYLTKSLV 63 (80)
Q Consensus 55 ~~G~afv~f 63 (80)
.+||+||.=
T Consensus 12 ~KGfGFI~~ 20 (74)
T PRK09937 12 AKGFGFICP 20 (74)
T ss_pred CCCeEEEee
Confidence 488999864
No 175
>PRK15464 cold shock-like protein CspH; Provisional
Probab=39.84 E-value=20 Score=19.06 Aligned_cols=11 Identities=0% Similarity=-0.369 Sum_probs=8.0
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+||+||.=.+
T Consensus 15 ~KGfGFI~~~~ 25 (70)
T PRK15464 15 KSGKGFIIPSD 25 (70)
T ss_pred CCCeEEEccCC
Confidence 48999997543
No 176
>PRK09507 cspE cold shock protein CspE; Reviewed
Probab=39.78 E-value=22 Score=18.67 Aligned_cols=11 Identities=0% Similarity=-0.257 Sum_probs=7.9
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+||+||.=.+
T Consensus 14 ~kGyGFI~~~~ 24 (69)
T PRK09507 14 SKGFGFITPED 24 (69)
T ss_pred CCCcEEEecCC
Confidence 47899987543
No 177
>PLN00168 Cytochrome P450; Provisional
Probab=38.99 E-value=74 Score=22.72 Aligned_cols=40 Identities=23% Similarity=0.461 Sum_probs=25.7
Q ss_pred CCCCCCCCcEEEEecCCCCC-----CHHHHHHHhhcCCCEEEEEE
Q psy10279 10 VRLPPEVNRVLYIRNLPYKI-----TGDEMYDIFGKYGAIRQIRI 49 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~-----~~~~l~~~F~~~G~i~~~~l 49 (80)
.++|+.+...-++||++.-. ....+.++..+||.|-.+++
T Consensus 34 ~~lpPgp~~~pl~G~l~~~~~~~~~~~~~~~~~~~~yG~i~~~~~ 78 (519)
T PLN00168 34 RRLPPGPPAVPLLGSLVWLTNSSADVEPLLRRLIARYGPVVSLRV 78 (519)
T ss_pred CCCCcCCCCCcccccHHhhccccccHHHHHHHHHHHhCCeEEEEc
Confidence 35666665566789986321 12346677788999877664
No 178
>PRK14998 cold shock-like protein CspD; Provisional
Probab=38.73 E-value=24 Score=18.81 Aligned_cols=10 Identities=0% Similarity=-0.336 Sum_probs=7.4
Q ss_pred CCcEEEEEec
Q psy10279 55 TRYLTKSLVM 64 (80)
Q Consensus 55 ~~G~afv~f~ 64 (80)
.+|||||.=.
T Consensus 12 ~kGfGFI~~~ 21 (73)
T PRK14998 12 AKGFGFICPE 21 (73)
T ss_pred CCceEEEecC
Confidence 4789998653
No 179
>PRK10943 cold shock-like protein CspC; Provisional
Probab=38.40 E-value=23 Score=18.59 Aligned_cols=11 Identities=0% Similarity=-0.218 Sum_probs=8.0
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+|||||.=.+
T Consensus 14 ~kGfGFI~~~~ 24 (69)
T PRK10943 14 SKGFGFITPAD 24 (69)
T ss_pred CCCcEEEecCC
Confidence 48999997643
No 180
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=38.18 E-value=85 Score=22.42 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=25.3
Q ss_pred CCCCCCCCcEEEEecCCCCCC--HHHHHHHhhcCCCEEEEEE
Q psy10279 10 VRLPPEVNRVLYIRNLPYKIT--GDEMYDIFGKYGAIRQIRI 49 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~~--~~~l~~~F~~~G~i~~~~l 49 (80)
.++|+.+...-++||++.-.. ...+.++..+||.|-.+++
T Consensus 30 ~~~pPgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~ 71 (504)
T PLN00110 30 RKLPPGPRGWPLLGALPLLGNMPHVALAKMAKRYGPVMFLKM 71 (504)
T ss_pred CCCcccCCCCCeeechhhcCCchHHHHHHHHHHhCCeEEEEc
Confidence 455655544446788764322 3556777778999877654
No 181
>smart00457 MACPF membrane-attack complex / perforin.
Probab=37.61 E-value=18 Score=22.53 Aligned_cols=22 Identities=27% Similarity=0.554 Sum_probs=19.5
Q ss_pred EecCCCCCCHHHHHHHhhcCCC
Q psy10279 22 IRNLPYKITGDEMYDIFGKYGA 43 (80)
Q Consensus 22 V~nLp~~~~~~~l~~~F~~~G~ 43 (80)
+.+||..++..+...+|..||.
T Consensus 30 l~~Lp~~~~~~~~~~fi~~yGT 51 (194)
T smart00457 30 LRDLPDQYNRGAYARFIDKYGT 51 (194)
T ss_pred HHhCccccCHHHHHHHHHHhCC
Confidence 4589999999999999999996
No 182
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=36.87 E-value=60 Score=21.02 Aligned_cols=25 Identities=24% Similarity=0.490 Sum_probs=20.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCC
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGA 43 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~ 43 (80)
.+.|+|||+.++..-+..++..+|.
T Consensus 96 ~~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 96 LKVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred ceEEEcCChhhHHHHHHHHhccCCC
Confidence 3678999999999999999864443
No 183
>PRK15463 cold shock-like protein CspF; Provisional
Probab=36.84 E-value=26 Score=18.55 Aligned_cols=11 Identities=0% Similarity=-0.456 Sum_probs=7.9
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+||+||+=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK15463 15 KSGKGLITPSD 25 (70)
T ss_pred CCceEEEecCC
Confidence 48999997643
No 184
>KOG4483|consensus
Probab=36.53 E-value=1.3e+02 Score=21.92 Aligned_cols=43 Identities=16% Similarity=0.285 Sum_probs=32.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCE-EEEEEccCCCCCcEEEEEe
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAI-RQIRIGNTPDTRYLTKSLV 63 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i-~~~~l~~~~~~~G~afv~f 63 (80)
.+.|-|.+.|...-.++|...|..|+.- -+|.|+-|. .+|-+|
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----halaVF 434 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----HALAVF 434 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----eeEEee
Confidence 4789999999999889999999998753 345555443 456666
No 185
>TIGR02381 cspD cold shock domain protein CspD. This model represents what appears to be a phylogenetically distinct clade, containing E. coli CspD and related proteobacterial proteins within the larger family of cold shock domain proteins described by pfam model pfam00313. The gene symbol cspD may have been used idependently for other subfamilies of cold shock domain proteins, such as for B. subtilis CspD. These proteins typically are shorter than 70 amino acids. In E. coli, CspD is a stress response protein induced in stationary phase. This homodimer binds single-stranded DNA and appears to inhibit DNA replication.
Probab=35.95 E-value=31 Score=18.01 Aligned_cols=11 Identities=0% Similarity=-0.339 Sum_probs=8.2
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+|||||.=.+
T Consensus 12 ~kGfGFI~~~~ 22 (68)
T TIGR02381 12 AKGFGFICPEG 22 (68)
T ss_pred CCCeEEEecCC
Confidence 48999997644
No 186
>KOG0156|consensus
Probab=35.94 E-value=46 Score=24.16 Aligned_cols=41 Identities=27% Similarity=0.361 Sum_probs=30.9
Q ss_pred CCCCCCCCcEEEEecCCCCCCH---HHHHHHhhcCCCEEEEEEc
Q psy10279 10 VRLPPEVNRVLYIRNLPYKITG---DEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~~~---~~l~~~F~~~G~i~~~~l~ 50 (80)
.++||.+..-=.||||+.-... ..+.++-.+||+|-.+++.
T Consensus 25 ~~lPPGP~~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG 68 (489)
T KOG0156|consen 25 RNLPPGPPPLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLG 68 (489)
T ss_pred CCCCcCCCCCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEec
Confidence 6788888766689999876443 4566666789999988765
No 187
>PLN03112 cytochrome P450 family protein; Provisional
Probab=35.28 E-value=1e+02 Score=21.85 Aligned_cols=43 Identities=28% Similarity=0.451 Sum_probs=27.7
Q ss_pred CCCCCCCCCCcEEEEecCCCCC--CHHHHHHHhhcCCCEEEEEEc
Q psy10279 8 ANVRLPPEVNRVLYIRNLPYKI--TGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 8 ~~~~~~~~~~~~l~V~nLp~~~--~~~~l~~~F~~~G~i~~~~l~ 50 (80)
+..+.|+.+...-++||+..-. ....+.++..+||.+-.+++.
T Consensus 29 ~~~~~ppgp~~~pl~G~~~~~~~~~~~~~~~~~~kyG~v~~~~~g 73 (514)
T PLN03112 29 KSLRLPPGPPRWPIVGNLLQLGPLPHRDLASLCKKYGPLVYLRLG 73 (514)
T ss_pred CCCCCccCCCCCCeeeeHHhcCCchHHHHHHHHHHhCCeEEEEec
Confidence 3345666666666778874321 345677888889998776653
No 188
>PRK09890 cold shock protein CspG; Provisional
Probab=34.44 E-value=24 Score=18.58 Aligned_cols=11 Identities=0% Similarity=-0.333 Sum_probs=8.5
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+||+||+=.+
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T PRK09890 15 DKGFGFITPDD 25 (70)
T ss_pred CCCcEEEecCC
Confidence 48999998654
No 189
>PHA01632 hypothetical protein
Probab=34.17 E-value=56 Score=16.89 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=16.4
Q ss_pred EEEecCCCCCCHHHHHHHhhc
Q psy10279 20 LYIRNLPYKITGDEMYDIFGK 40 (80)
Q Consensus 20 l~V~nLp~~~~~~~l~~~F~~ 40 (80)
+.|-.+|..-|+++|+..+.+
T Consensus 19 ilieqvp~kpteeelrkvlpk 39 (64)
T PHA01632 19 ILIEQVPQKPTEEELRKVLPK 39 (64)
T ss_pred EehhhcCCCCCHHHHHHHHHH
Confidence 344688999999999887654
No 190
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=33.21 E-value=17 Score=21.71 Aligned_cols=38 Identities=24% Similarity=0.400 Sum_probs=26.6
Q ss_pred CCCCCHHHHHHHhhc---CCCEEEEEEccCCCCC---cEEEEEe
Q psy10279 26 PYKITGDEMYDIFGK---YGAIRQIRIGNTPDTR---YLTKSLV 63 (80)
Q Consensus 26 p~~~~~~~l~~~F~~---~G~i~~~~l~~~~~~~---G~afv~f 63 (80)
|+..+-.+++++|+. |-.|..-++.+|+-+. ..||.-|
T Consensus 83 PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~ 126 (145)
T TIGR02542 83 PYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLF 126 (145)
T ss_pred ceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEe
Confidence 556799999999985 5555555555665543 4788887
No 191
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=33.14 E-value=87 Score=18.79 Aligned_cols=22 Identities=23% Similarity=0.552 Sum_probs=18.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGK 40 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~ 40 (80)
.+.++|+|+.++...+..++..
T Consensus 79 d~vi~n~Py~~~~~~i~~~l~~ 100 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEE 100 (169)
T ss_pred CEEEECCCcccHHHHHHHHHhc
Confidence 4668999999998888888764
No 192
>PRK10354 RNA chaperone/anti-terminator; Provisional
Probab=31.77 E-value=35 Score=17.88 Aligned_cols=10 Identities=0% Similarity=-0.383 Sum_probs=7.2
Q ss_pred CCcEEEEEec
Q psy10279 55 TRYLTKSLVM 64 (80)
Q Consensus 55 ~~G~afv~f~ 64 (80)
.+||+||.=.
T Consensus 15 ~kGfGFI~~~ 24 (70)
T PRK10354 15 DKGFGFITPD 24 (70)
T ss_pred CCCcEEEecC
Confidence 3788888753
No 193
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=31.69 E-value=98 Score=17.21 Aligned_cols=46 Identities=17% Similarity=0.193 Sum_probs=27.1
Q ss_pred EEEEecCCCCCCHHHH---HHHhhcCCCEEEEEE-----ccCCCCCcEEEEEec
Q psy10279 19 VLYIRNLPYKITGDEM---YDIFGKYGAIRQIRI-----GNTPDTRYLTKSLVM 64 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l---~~~F~~~G~i~~~~l-----~~~~~~~G~afv~f~ 64 (80)
..|+.|||..+.+.++ +..+..++.-..|.. .....+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 4588999999887764 555666665445543 111224677666653
No 194
>PF14893 PNMA: PNMA
Probab=30.38 E-value=47 Score=23.07 Aligned_cols=25 Identities=16% Similarity=0.279 Sum_probs=20.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGK 40 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~ 40 (80)
.-+.|.|.+||.++++.++.+....
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~~ 41 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQA 41 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHHH
Confidence 3478999999999999998887663
No 195
>PLN02183 ferulate 5-hydroxylase
Probab=30.07 E-value=1.2e+02 Score=21.60 Aligned_cols=40 Identities=20% Similarity=0.415 Sum_probs=24.9
Q ss_pred CCCCCCCCcEEEEecCCCC--CCHHHHHHHhhcCCCEEEEEE
Q psy10279 10 VRLPPEVNRVLYIRNLPYK--ITGDEMYDIFGKYGAIRQIRI 49 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~--~~~~~l~~~F~~~G~i~~~~l 49 (80)
.+.|+.+...=++||+..- .....+.++..+||.+-.+++
T Consensus 35 ~~~ppgp~~~Pl~G~l~~~~~~~~~~~~~~~~~yG~i~~~~~ 76 (516)
T PLN02183 35 LPYPPGPKGLPIIGNMLMMDQLTHRGLANLAKQYGGLFHMRM 76 (516)
T ss_pred CCCCcCCCCCCeeccHHhcCCcchHHHHHHHHHhCCeeEEEe
Confidence 3456555555567887532 122446777888999877664
No 196
>COG1278 CspC Cold shock proteins [Transcription]
Probab=28.97 E-value=33 Score=18.27 Aligned_cols=10 Identities=10% Similarity=-0.267 Sum_probs=5.9
Q ss_pred CCcEEEEEec
Q psy10279 55 TRYLTKSLVM 64 (80)
Q Consensus 55 ~~G~afv~f~ 64 (80)
.+||+||+=+
T Consensus 12 ~KGfGFI~p~ 21 (67)
T COG1278 12 TKGFGFITPE 21 (67)
T ss_pred CCcceEcCCC
Confidence 4667766543
No 197
>PLN02971 tryptophan N-hydroxylase
Probab=28.92 E-value=1e+02 Score=22.29 Aligned_cols=41 Identities=15% Similarity=0.206 Sum_probs=25.6
Q ss_pred CCCCCCCCCcEEEEecCCCCC-C---HHHHHHHhhcCC-CEEEEEE
Q psy10279 9 NVRLPPEVNRVLYIRNLPYKI-T---GDEMYDIFGKYG-AIRQIRI 49 (80)
Q Consensus 9 ~~~~~~~~~~~l~V~nLp~~~-~---~~~l~~~F~~~G-~i~~~~l 49 (80)
..++|+.+...-+|||++.-. . ...+.++..+|| .|..+++
T Consensus 55 ~~~lPPGP~~lPiiGnl~~l~~~~~~~~~l~~~~~~yg~~i~~~~~ 100 (543)
T PLN02971 55 LHPLPPGPTGFPIVGMIPAMLKNRPVFRWLHSLMKELNTEIACVRL 100 (543)
T ss_pred CCCCCcCCCCCCcccchHHhccCCcHhHHHHHHHHHhCCceEEEEc
Confidence 345666665555689986432 1 234678888998 6766553
No 198
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=28.86 E-value=53 Score=19.16 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=27.3
Q ss_pred cEEEEecCCCC-CCHHHHHHHhhcCCCEEEEEEccC
Q psy10279 18 RVLYIRNLPYK-ITGDEMYDIFGKYGAIRQIRIGNT 52 (80)
Q Consensus 18 ~~l~V~nLp~~-~~~~~l~~~F~~~G~i~~~~l~~~ 52 (80)
..|-|.|||.. .+++-+..+-+.+|.+.++.....
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 34667899987 577788999999999998875433
No 199
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=27.75 E-value=1.5e+02 Score=21.82 Aligned_cols=37 Identities=16% Similarity=0.541 Sum_probs=27.6
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHhhcC----CCEEEEEEc
Q psy10279 14 PEVNRVLYIRNLPYK-ITGDEMYDIFGKY----GAIRQIRIG 50 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~-~~~~~l~~~F~~~----G~i~~~~l~ 50 (80)
..+...|-|-||.|+ +...+|..+|+.| |.+..|.|.
T Consensus 143 G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iy 184 (622)
T COG5638 143 GNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIY 184 (622)
T ss_pred CCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEec
Confidence 345678889999997 6778898888865 667666654
No 200
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=27.64 E-value=17 Score=22.46 Aligned_cols=24 Identities=33% Similarity=0.678 Sum_probs=16.6
Q ss_pred EecCCCCCCHHH---HHHHhhcCCCEE
Q psy10279 22 IRNLPYKITGDE---MYDIFGKYGAIR 45 (80)
Q Consensus 22 V~nLp~~~~~~~---l~~~F~~~G~i~ 45 (80)
+.+||...+... ..++|..||.-.
T Consensus 53 l~~L~~~~~~~~~~~y~~f~~~yGTH~ 79 (212)
T PF01823_consen 53 LNALPAEYNSDNTDEYYRFFDKYGTHY 79 (212)
T ss_dssp HHTSHSS--HHHHHHHHHHHHHH-SEE
T ss_pred HHhhCcccCccchHHHHHHHHHhCcEE
Confidence 467888888877 788999999843
No 201
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=26.30 E-value=65 Score=25.24 Aligned_cols=29 Identities=24% Similarity=0.497 Sum_probs=23.6
Q ss_pred CCcEEEEecCCCCC-CHHHHHHHhhcCCCE
Q psy10279 16 VNRVLYIRNLPYKI-TGDEMYDIFGKYGAI 44 (80)
Q Consensus 16 ~~~~l~V~nLp~~~-~~~~l~~~F~~~G~i 44 (80)
++++++|..||-++ ++++|..+|.+.+..
T Consensus 207 ssRTvlis~LP~~~~~~e~L~~~~~kl~~~ 236 (827)
T COG5594 207 SSRTVLISGLPSELRSDEELKELFDKLKVG 236 (827)
T ss_pred CCceEEeecCChhhcCchhHHHHHhhcCee
Confidence 56999999999885 667899999976543
No 202
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=25.29 E-value=1.1e+02 Score=20.29 Aligned_cols=26 Identities=23% Similarity=0.506 Sum_probs=21.1
Q ss_pred CCcEEEEecC-CCCCCHHHHHHHhhcC
Q psy10279 16 VNRVLYIRNL-PYKITGDEMYDIFGKY 41 (80)
Q Consensus 16 ~~~~l~V~nL-p~~~~~~~l~~~F~~~ 41 (80)
.++.+|.|+. |+....+++++...++
T Consensus 210 ~gkv~Y~Gg~GP~~y~~~e~r~~L~~~ 236 (237)
T PF00837_consen 210 DGKVVYKGGPGPFGYSPEELREWLEKY 236 (237)
T ss_pred CCEEEEeCCCCCCcCCHHHHHHHHHhc
Confidence 4578899887 7788999999888765
No 203
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=25.22 E-value=78 Score=20.65 Aligned_cols=21 Identities=24% Similarity=0.531 Sum_probs=16.7
Q ss_pred EEEEecCCCCCCHHHHHHHhh
Q psy10279 19 VLYIRNLPYKITGDEMYDIFG 39 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~ 39 (80)
.+.|+|+|+.++...+..++.
T Consensus 93 d~Vv~NlPy~i~s~~~~~l~~ 113 (258)
T PRK14896 93 NKVVSNLPYQISSPITFKLLK 113 (258)
T ss_pred eEEEEcCCcccCcHHHHHHHh
Confidence 477899999998777777664
No 204
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=25.15 E-value=72 Score=22.26 Aligned_cols=43 Identities=21% Similarity=0.042 Sum_probs=25.0
Q ss_pred CCCCCCCCCCcEEEEecCCCCC-------CHHHHHHHhhcCCCEEEEEEc
Q psy10279 8 ANVRLPPEVNRVLYIRNLPYKI-------TGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 8 ~~~~~~~~~~~~l~V~nLp~~~-------~~~~l~~~F~~~G~i~~~~l~ 50 (80)
+..+.|+.+...=+|||+..-. ...-+..++.+||.|-.+++.
T Consensus 4 ~~~~~Ppg~~~~P~iG~~~~l~~~~~~~~~~~~~~~~~~~yG~i~~~~lg 53 (452)
T PLN03141 4 KKSRLPKGSLGWPVIGETLDFISCAYSSRPESFMDKRRSLYGKVFKSHIF 53 (452)
T ss_pred CCCCCCCCCCCCCchhhHHHHHhhcccCChHHHHHHHHHHhhheeeeccC
Confidence 3344565544444578765321 123456777899998776653
No 205
>PLN02687 flavonoid 3'-monooxygenase
Probab=24.87 E-value=1.7e+02 Score=20.84 Aligned_cols=40 Identities=25% Similarity=0.339 Sum_probs=24.5
Q ss_pred CCCCCCCCcEEEEecCCCCC--CHHHHHHHhhcCCCEEEEEE
Q psy10279 10 VRLPPEVNRVLYIRNLPYKI--TGDEMYDIFGKYGAIRQIRI 49 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~--~~~~l~~~F~~~G~i~~~~l 49 (80)
.+.|+.+...-++||+..-. ....+.+...+||.|..+++
T Consensus 33 ~~~pPgp~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~ 74 (517)
T PLN02687 33 RPLPPGPRGWPVLGNLPQLGPKPHHTMAALAKTYGPLFRLRF 74 (517)
T ss_pred CCCCccCCCCCccccHHhcCCchhHHHHHHHHHhCCeeEEec
Confidence 34565554455678874321 23456777788999877664
No 206
>COG5584 Predicted small secreted protein [Function unknown]
Probab=23.50 E-value=85 Score=18.08 Aligned_cols=30 Identities=17% Similarity=0.197 Sum_probs=19.9
Q ss_pred cCCCCCCHHHHHHHhhcCCCEEEEEEccCC
Q psy10279 24 NLPYKITGDEMYDIFGKYGAIRQIRIGNTP 53 (80)
Q Consensus 24 nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~ 53 (80)
|++.+.--.-+++.|+++|+|.--++...+
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~p 58 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEP 58 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEec
Confidence 344444445678899999999876655433
No 207
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=23.10 E-value=1.8e+02 Score=18.38 Aligned_cols=38 Identities=11% Similarity=-0.015 Sum_probs=23.0
Q ss_pred CHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 30 TGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 30 ~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
....|+++|..++.+....... +-+=..|.|.+.++|.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~---sFrRi~v~f~~~~~A~ 45 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK---SFRRIRVVFESPESAQ 45 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET---TTTEEEEE-SSTTHHH
T ss_pred hHHHHHHHHHhcCCceEEEEcC---CCCEEEEEeCCHHHHH
Confidence 4578999999999888765542 2245688885555543
No 208
>PHA02968 hypothetical protein; Provisional
Probab=22.74 E-value=1.6e+02 Score=20.73 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=20.3
Q ss_pred HHHHhhcCCCEEEEEEccCCCCCcEEEEEe
Q psy10279 34 MYDIFGKYGAIRQIRIGNTPDTRYLTKSLV 63 (80)
Q Consensus 34 l~~~F~~~G~i~~~~l~~~~~~~G~afv~f 63 (80)
...+.++||.+.++++....-...|.-|.|
T Consensus 32 fd~flskfg~~~~i~~l~~~~~~kyttis~ 61 (414)
T PHA02968 32 FDKFLSKFGNIIDIKLLNGIIGEKYTTISF 61 (414)
T ss_pred HHHHHHhhcceeeeeeeccccccceeEEEE
Confidence 456778999999999876554333444444
No 209
>PLN02966 cytochrome P450 83A1
Probab=22.54 E-value=2e+02 Score=20.38 Aligned_cols=40 Identities=30% Similarity=0.306 Sum_probs=26.1
Q ss_pred CCCCCCCCcEEEEecCCCCC---CHHHHHHHhhcCCCEEEEEE
Q psy10279 10 VRLPPEVNRVLYIRNLPYKI---TGDEMYDIFGKYGAIRQIRI 49 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~---~~~~l~~~F~~~G~i~~~~l 49 (80)
.++|+.+...-++||+..-. ....+.++..+||.+-.+++
T Consensus 28 ~~~ppgp~~~p~~G~l~~l~~~~~~~~~~~~~~~yG~v~~~~~ 70 (502)
T PLN02966 28 YKLPPGPSPLPVIGNLLQLQKLNPQRFFAGWAKKYGPILSYRI 70 (502)
T ss_pred CCCCcCCCCCCeeccHHhcCCCChhHHHHHHHHHhCCeEEEec
Confidence 34566655555788885421 34567778888999876654
No 210
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=22.47 E-value=95 Score=19.50 Aligned_cols=22 Identities=18% Similarity=0.442 Sum_probs=18.1
Q ss_pred CCC--CCCHHHHHHHhhcCCCEEE
Q psy10279 25 LPY--KITGDEMYDIFGKYGAIRQ 46 (80)
Q Consensus 25 Lp~--~~~~~~l~~~F~~~G~i~~ 46 (80)
.|. .++.+.+..++.+||+|.-
T Consensus 90 ~P~~~~~t~e~~~~LL~~yGPLwv 113 (166)
T PF12385_consen 90 EPANASYTAEGLANLLREYGPLWV 113 (166)
T ss_pred CCcccccCHHHHHHHHHHcCCeEE
Confidence 444 6788999999999999853
No 211
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=21.89 E-value=60 Score=22.09 Aligned_cols=19 Identities=32% Similarity=0.555 Sum_probs=16.4
Q ss_pred CCCHHHHHHHhhcCCCEEE
Q psy10279 28 KITGDEMYDIFGKYGAIRQ 46 (80)
Q Consensus 28 ~~~~~~l~~~F~~~G~i~~ 46 (80)
.+++++|.++|..||....
T Consensus 138 ~~~~~~L~~i~~~yGee~~ 156 (296)
T PRK00050 138 TYSEEELARIFKEYGEERF 156 (296)
T ss_pred hCCHHHHHHHHHHhcCcch
Confidence 4689999999999998764
No 212
>PHA03075 glutaredoxin-like protein; Provisional
Probab=21.63 E-value=1.9e+02 Score=17.22 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=20.1
Q ss_pred HHHHhhcCCCEEEEEEccCCCCCcEEEEEeccc
Q psy10279 34 MYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKC 66 (80)
Q Consensus 34 l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~ 66 (80)
+..+|..+|.---.-+..|+.++..|||.+.+.
T Consensus 59 Inn~~~~lgne~v~lfKydp~t~qmA~V~i~k~ 91 (123)
T PHA03075 59 INNFFKHLGNEYVSLFKYDPETKQMAFVDISKF 91 (123)
T ss_pred HHHHHHhhcccEEEEEEEcCCCCcEEEEehhHe
Confidence 455666666322223345667788999988653
No 213
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=21.61 E-value=1.7e+02 Score=18.56 Aligned_cols=31 Identities=26% Similarity=0.483 Sum_probs=22.8
Q ss_pred CCCCcEEEEecCCCC--------------CCHHHHHHHhhcCCCE
Q psy10279 14 PEVNRVLYIRNLPYK--------------ITGDEMYDIFGKYGAI 44 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~--------------~~~~~l~~~F~~~G~i 44 (80)
|.+--.|||.|+... ...+.+.++|++|+..
T Consensus 64 p~P~f~Iyi~nIhk~kHGSDSg~YD~eGrFvp~kFe~iF~kya~~ 108 (174)
T PF05042_consen 64 PDPFFRIYIKNIHKGKHGSDSGAYDTEGRFVPQKFEEIFSKYAKT 108 (174)
T ss_pred CCCceeEEeecccccccCCCccccccCCcCCHHHHHHHHHHhCCC
Confidence 445578999998763 2345689999999864
No 214
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=21.51 E-value=1.3e+02 Score=23.08 Aligned_cols=25 Identities=12% Similarity=0.085 Sum_probs=19.9
Q ss_pred hcCCCEEEEEEccCCCCCcEEEEEe
Q psy10279 39 GKYGAIRQIRIGNTPDTRYLTKSLV 63 (80)
Q Consensus 39 ~~~G~i~~~~l~~~~~~~G~afv~f 63 (80)
+..-.|..|++-.+.++||.||.+=
T Consensus 371 s~mPniQqIqLe~~ERPKGiCFltd 395 (671)
T PF15390_consen 371 SSMPNIQQIQLESNERPKGICFLTD 395 (671)
T ss_pred ccCCCeeEEEcccCCCCceeeEccC
Confidence 3466788899888888999999763
No 215
>PF05632 DUF792: Borrelia burgdorferi protein of unknown function (DUF792); InterPro: IPR008510 This entry consists of several hypothetical proteins found in Borrelia species.
Probab=21.47 E-value=1.1e+02 Score=19.77 Aligned_cols=28 Identities=18% Similarity=0.172 Sum_probs=16.8
Q ss_pred HHHHhhcCCCEEEEEEccCCCCCcEEEE
Q psy10279 34 MYDIFGKYGAIRQIRIGNTPDTRYLTKS 61 (80)
Q Consensus 34 l~~~F~~~G~i~~~~l~~~~~~~G~afv 61 (80)
...+|+-||.-.-+.+....+-+|+|||
T Consensus 41 ~nQi~sLf~~sNFlvLFPR~DfKGfGYV 68 (213)
T PF05632_consen 41 VNQIFSLFGASNFLVLFPRMDFKGFGYV 68 (213)
T ss_pred HHHHHHHhcccceEEEecCCCcCccccc
Confidence 4556666776555555444445777776
No 216
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=21.35 E-value=62 Score=22.18 Aligned_cols=19 Identities=21% Similarity=0.443 Sum_probs=16.5
Q ss_pred CCCHHHHHHHhhcCCCEEE
Q psy10279 28 KITGDEMYDIFGKYGAIRQ 46 (80)
Q Consensus 28 ~~~~~~l~~~F~~~G~i~~ 46 (80)
.+++++|.++|..||+...
T Consensus 140 ~~~e~~L~~i~~~yGEe~~ 158 (305)
T TIGR00006 140 TYSEEDLERILKKYGEEKF 158 (305)
T ss_pred hCCHHHHHHHHHHhcCcch
Confidence 4799999999999998754
No 217
>PRK06937 type III secretion system protein; Reviewed
Probab=21.18 E-value=1e+02 Score=19.46 Aligned_cols=31 Identities=0% Similarity=-0.006 Sum_probs=21.4
Q ss_pred HHHHHhhcCCCEEEEEEccCCC-CCcEEEEEe
Q psy10279 33 EMYDIFGKYGAIRQIRIGNTPD-TRYLTKSLV 63 (80)
Q Consensus 33 ~l~~~F~~~G~i~~~~l~~~~~-~~G~afv~f 63 (80)
.+..++..++.+..+.+..|+. .+|-|.|+=
T Consensus 148 ~~~~~~~~~~~~~~l~i~~D~~L~~Ggc~iET 179 (204)
T PRK06937 148 QIAKVLKDFPEVGYLEVVADARLDQGGCILET 179 (204)
T ss_pred HHHHHHHhCCCCccEEEEeCCCCCCCCeEEec
Confidence 3445666777777788888876 577777764
No 218
>PF11910 NdhO: Cyanobacterial and plant NDH-1 subunit O; InterPro: IPR020905 NAD(P)H-quinone oxidoreductase (NDH-1) shuttles electrons from an unknown electron donor, via FMN and iron-sulphur (Fe-S) centres, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. It couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration. NDH-1 can be composed of about 15 different subunits, although different subcomplexes with different compositions have been identified which probably have different functions. This entry represents subunit O. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process, 0005886 plasma membrane
Probab=21.07 E-value=1.1e+02 Score=16.24 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=15.2
Q ss_pred HHhhcCCCEEEEEEccCCCCCcEEEEEe
Q psy10279 36 DIFGKYGAIRQIRIGNTPDTRYLTKSLV 63 (80)
Q Consensus 36 ~~F~~~G~i~~~~l~~~~~~~G~afv~f 63 (80)
-+|..-|+|..++ ..||+|.|
T Consensus 30 Yife~~GEvl~ik-------gdYa~vr~ 50 (67)
T PF11910_consen 30 YIFEGPGEVLDIK-------GDYAQVRF 50 (67)
T ss_pred ceecCCCeEEEec-------CCEEEEEe
Confidence 3567778887764 35999998
No 219
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=20.40 E-value=1.2e+02 Score=14.26 Aligned_cols=18 Identities=17% Similarity=0.362 Sum_probs=14.4
Q ss_pred ecCCCCCCHHHHHHHhhc
Q psy10279 23 RNLPYKITGDEMYDIFGK 40 (80)
Q Consensus 23 ~nLp~~~~~~~l~~~F~~ 40 (80)
-+|+...+.++|+..|..
T Consensus 6 Lgl~~~~~~~~ik~~y~~ 23 (55)
T cd06257 6 LGVPPDASDEEIKKAYRK 23 (55)
T ss_pred cCCCCCCCHHHHHHHHHH
Confidence 367888999999888764
Done!