Query psy10279
Match_columns 80
No_of_seqs 164 out of 1084
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 22:23:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10279.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10279hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d2w_A TAR DNA-binding protein 99.8 2.4E-18 8.2E-23 95.5 6.8 54 12-67 6-59 (89)
2 3lqv_A PRE-mRNA branch site pr 99.8 4.2E-18 1.4E-22 97.7 7.6 59 11-69 2-60 (115)
3 2cq1_A PTB-like protein L; RRM 99.7 7.9E-18 2.7E-22 95.8 8.1 57 10-69 8-64 (101)
4 1sjq_A Polypyrimidine tract-bi 99.7 3.9E-18 1.3E-22 97.9 6.5 56 12-70 11-66 (105)
5 4fxv_A ELAV-like protein 1; RN 99.7 4.1E-18 1.4E-22 96.3 6.3 54 16-69 18-74 (99)
6 1x4a_A Splicing factor, argini 99.7 1.6E-17 5.6E-22 94.5 8.7 59 11-69 16-74 (109)
7 4f25_A Polyadenylate-binding p 99.7 4.6E-18 1.6E-22 98.1 5.5 53 17-69 5-58 (115)
8 1wex_A Hypothetical protein (r 99.7 3.7E-17 1.3E-21 93.4 8.6 55 13-70 11-65 (104)
9 2ad9_A Polypyrimidine tract-bi 99.7 1.3E-17 4.4E-22 97.6 6.5 56 11-69 25-80 (119)
10 3s8s_A Histone-lysine N-methyl 99.7 1.5E-17 5.1E-22 95.7 6.6 55 15-69 4-61 (110)
11 1s79_A Lupus LA protein; RRM, 99.7 1.9E-17 6.4E-22 94.3 6.9 55 15-69 9-65 (103)
12 1x4e_A RNA binding motif, sing 99.7 3E-17 1E-21 89.6 6.8 56 14-69 2-60 (85)
13 2cq3_A RNA-binding protein 9; 99.7 9.7E-17 3.3E-21 90.4 9.0 58 12-69 10-68 (103)
14 1wi8_A EIF-4B, eukaryotic tran 99.7 5.7E-17 2E-21 91.6 7.9 60 9-69 7-70 (104)
15 3s7r_A Heterogeneous nuclear r 99.7 3.4E-17 1.2E-21 89.8 6.6 57 13-69 7-66 (87)
16 1x4d_A Matrin 3; structural ge 99.7 2.8E-17 9.5E-22 93.8 6.4 55 12-69 10-65 (102)
17 1x4h_A RNA-binding protein 28; 99.7 7.7E-17 2.6E-21 91.7 8.2 58 12-69 10-70 (111)
18 2cqd_A RNA-binding region cont 99.7 1.4E-16 4.7E-21 91.6 9.2 59 11-69 11-72 (116)
19 2e5h_A Zinc finger CCHC-type a 99.7 9.2E-17 3.2E-21 89.0 8.2 60 10-69 9-71 (94)
20 3r27_A HnRNP L, heterogeneous 99.7 5.5E-17 1.9E-21 92.4 7.4 55 12-69 16-70 (100)
21 2lxi_A RNA-binding protein 10; 99.7 5.7E-18 1.9E-22 94.3 3.2 53 17-69 1-57 (91)
22 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.7E-17 3E-21 90.6 8.2 57 13-69 11-68 (103)
23 1wf0_A TDP-43, TAR DNA-binding 99.7 2.3E-17 8E-22 90.8 5.5 55 15-78 3-57 (88)
24 2dgs_A DAZ-associated protein 99.7 1.2E-16 4E-21 89.5 8.5 57 13-69 6-65 (99)
25 2dgx_A KIAA0430 protein; RRM d 99.7 4.8E-17 1.6E-21 91.0 6.9 57 13-69 5-65 (96)
26 2cqc_A Arginine/serine-rich sp 99.7 4.7E-17 1.6E-21 90.3 6.7 60 10-69 8-70 (95)
27 1x5u_A Splicing factor 3B subu 99.7 1.1E-16 3.7E-21 90.4 8.2 58 12-69 10-70 (105)
28 2ywk_A Putative RNA-binding pr 99.7 3.4E-17 1.2E-21 91.0 5.9 59 11-69 10-70 (95)
29 2dnz_A Probable RNA-binding pr 99.7 1.1E-16 3.6E-21 88.9 7.9 56 14-69 2-60 (95)
30 2khc_A Testis-specific RNP-typ 99.7 1.5E-16 5E-21 91.6 8.4 56 14-69 37-95 (118)
31 2dnh_A Bruno-like 5, RNA bindi 99.7 1.2E-16 4.2E-21 90.2 7.8 55 15-69 13-69 (105)
32 2dnm_A SRP46 splicing factor; 99.7 1.2E-16 4E-21 90.1 7.7 60 13-72 9-71 (103)
33 2dh8_A DAZ-associated protein 99.7 5.8E-17 2E-21 91.6 6.4 60 10-69 9-71 (105)
34 1wg5_A Heterogeneous nuclear r 99.7 1.5E-16 5.1E-21 90.2 8.1 57 13-69 11-70 (104)
35 2dgp_A Bruno-like 4, RNA bindi 99.7 7.5E-17 2.6E-21 91.2 6.7 59 11-69 7-68 (106)
36 2cph_A RNA binding motif prote 99.7 1.7E-16 5.9E-21 89.8 8.2 57 13-69 11-71 (107)
37 3mdf_A Peptidyl-prolyl CIS-tra 99.7 7.9E-17 2.7E-21 87.7 6.5 56 14-69 4-62 (85)
38 2cqg_A TDP-43, TAR DNA-binding 99.7 9.3E-17 3.2E-21 90.5 7.0 59 11-69 9-70 (103)
39 2do4_A Squamous cell carcinoma 99.7 1.6E-16 5.3E-21 89.1 7.6 57 13-69 13-71 (100)
40 2rs2_A Musashi-1, RNA-binding 99.7 8.6E-17 2.9E-21 92.0 6.6 54 14-67 22-78 (109)
41 2kxn_B Transformer-2 protein h 99.7 1.1E-16 3.8E-21 94.2 7.2 59 11-69 40-101 (129)
42 2d9p_A Polyadenylate-binding p 99.7 1.1E-16 3.7E-21 90.2 6.8 61 9-69 7-68 (103)
43 3bs9_A Nucleolysin TIA-1 isofo 99.7 7.1E-17 2.4E-21 88.3 5.8 56 14-69 3-61 (87)
44 1whw_A Hypothetical protein ri 99.7 2.1E-16 7E-21 88.4 7.8 56 14-69 5-63 (99)
45 2dng_A Eukaryotic translation 99.7 1.5E-16 5.3E-21 89.7 7.3 60 9-69 7-69 (103)
46 2cpz_A CUG triplet repeat RNA- 99.7 8.8E-17 3E-21 92.3 6.3 58 12-69 20-80 (115)
47 2x1f_A MRNA 3'-END-processing 99.7 1.7E-16 5.6E-21 88.6 7.1 54 16-69 1-57 (96)
48 2lkz_A RNA-binding protein 5; 99.7 3.1E-17 1E-21 92.4 4.0 56 17-72 9-69 (95)
49 2dgo_A Cytotoxic granule-assoc 99.7 1.9E-16 6.4E-21 90.8 7.4 59 11-69 9-70 (115)
50 2la6_A RNA-binding protein FUS 99.7 1.4E-16 4.7E-21 89.3 6.7 60 10-69 6-76 (99)
51 2cq0_A Eukaryotic translation 99.7 1.3E-16 4.5E-21 89.9 6.5 58 12-69 10-70 (103)
52 2a3j_A U1 small nuclear ribonu 99.7 1.6E-16 5.5E-21 93.6 7.1 56 14-69 26-85 (127)
53 1x4f_A Matrin 3; structural ge 99.7 1.1E-16 3.9E-21 92.6 6.2 54 13-69 21-75 (112)
54 1x5s_A Cold-inducible RNA-bind 99.7 1.9E-16 6.6E-21 88.9 6.9 57 13-69 8-67 (102)
55 2dgv_A HnRNP M, heterogeneous 99.7 1.8E-16 6E-21 87.6 6.6 57 13-69 4-61 (92)
56 2krb_A Eukaryotic translation 99.7 1.6E-16 5.6E-21 86.2 6.3 53 17-69 1-60 (81)
57 2div_A TRNA selenocysteine ass 99.7 1.2E-16 4.1E-21 89.4 5.8 57 13-69 5-65 (99)
58 4f02_A Polyadenylate-binding p 99.7 1E-16 3.5E-21 100.4 6.0 59 11-69 9-70 (213)
59 2cqb_A Peptidyl-prolyl CIS-tra 99.7 1.3E-16 4.6E-21 89.6 5.9 56 14-69 9-67 (102)
60 1p27_B RNA-binding protein 8A; 99.7 1.6E-16 5.6E-21 89.8 6.3 55 15-69 21-78 (106)
61 1x4c_A Splicing factor, argini 99.7 4.4E-16 1.5E-20 88.7 8.1 54 12-69 10-63 (108)
62 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 5.6E-16 1.9E-20 91.1 8.7 58 12-69 58-118 (140)
63 2cpy_A RNA-binding protein 12; 99.7 1.7E-16 5.8E-21 91.3 6.3 57 13-69 11-70 (114)
64 3ns6_A Eukaryotic translation 99.7 4.8E-17 1.6E-21 91.7 3.9 55 15-69 4-67 (100)
65 3ulh_A THO complex subunit 4; 99.7 2.5E-16 8.5E-21 89.2 6.8 58 12-69 24-83 (107)
66 2err_A Ataxin-2-binding protei 99.7 1.9E-16 6.6E-21 90.5 6.4 56 14-69 26-82 (109)
67 4a8x_A RNA-binding protein wit 99.7 2.6E-16 8.8E-21 86.1 6.5 54 16-69 3-60 (88)
68 2nlw_A Eukaryotic translation 99.7 3E-16 1E-20 89.1 7.0 58 13-70 11-75 (105)
69 1x5t_A Splicing factor 3B subu 99.7 1.5E-16 5.2E-21 88.4 5.6 55 15-69 3-61 (96)
70 2jrs_A RNA-binding protein 39; 99.7 2.3E-16 7.8E-21 90.2 6.4 58 12-69 21-81 (108)
71 2dhg_A TRNA selenocysteine ass 99.7 2.6E-16 8.8E-21 88.7 6.5 57 13-69 5-64 (104)
72 1oo0_B CG8781-PA, drosophila Y 99.7 3.6E-16 1.2E-20 89.0 7.1 56 14-69 23-81 (110)
73 1why_A Hypothetical protein ri 99.7 7.1E-16 2.4E-20 86.1 8.1 54 13-69 13-66 (97)
74 2do0_A HnRNP M, heterogeneous 99.7 5.1E-16 1.7E-20 88.7 7.5 57 13-69 11-69 (114)
75 2cq4_A RNA binding motif prote 99.7 1.2E-15 4.3E-20 87.3 9.0 53 17-69 25-80 (114)
76 2fy1_A RNA-binding motif prote 99.6 3.9E-16 1.3E-20 90.2 6.8 56 14-69 4-61 (116)
77 3ucg_A Polyadenylate-binding p 99.6 4.8E-16 1.6E-20 85.2 6.8 53 17-69 6-61 (89)
78 1wez_A HnRNP H', FTP-3, hetero 99.6 2.5E-16 8.7E-21 89.3 5.8 57 12-69 10-68 (102)
79 3md1_A Nuclear and cytoplasmic 99.6 3.6E-16 1.2E-20 84.7 6.0 52 18-69 2-56 (83)
80 2cpi_A CCR4-NOT transcription 99.6 3.8E-16 1.3E-20 89.4 6.2 55 15-69 13-76 (111)
81 2cpf_A RNA binding motif prote 99.6 1.7E-16 6E-21 88.6 4.7 55 15-69 3-63 (98)
82 2m2b_A RNA-binding protein 10; 99.6 1.7E-16 5.9E-21 93.1 4.9 53 14-66 20-77 (131)
83 2ytc_A PRE-mRNA-splicing facto 99.6 7.8E-16 2.7E-20 83.8 7.1 53 14-69 9-61 (85)
84 2dnq_A RNA-binding protein 4B; 99.6 8.2E-16 2.8E-20 84.8 7.2 52 13-69 4-55 (90)
85 2wbr_A GW182, gawky, LD47780P; 99.6 3.9E-16 1.3E-20 87.0 5.8 53 16-78 6-58 (89)
86 1x5o_A RNA binding motif, sing 99.6 9.6E-16 3.3E-20 87.7 7.7 56 14-69 22-79 (114)
87 2cpj_A Non-POU domain-containi 99.6 7.7E-16 2.7E-20 86.2 7.1 54 14-70 12-65 (99)
88 1uaw_A Mouse-musashi-1; RNP-ty 99.6 1.4E-16 5E-21 85.3 3.8 52 18-69 1-55 (77)
89 2xs2_A Deleted in azoospermia- 99.6 1.8E-16 6E-21 89.2 4.3 55 15-69 7-63 (102)
90 3ex7_B RNA-binding protein 8A; 99.6 8.3E-16 2.8E-20 89.3 7.2 56 14-69 19-77 (126)
91 2db1_A Heterogeneous nuclear r 99.6 2.9E-16 9.9E-21 91.0 5.3 58 12-69 12-74 (118)
92 2mss_A Protein (musashi1); RNA 99.6 2.7E-16 9.2E-21 84.0 4.7 50 19-68 1-53 (75)
93 2dnl_A Cytoplasmic polyadenyla 99.6 3.3E-16 1.1E-20 90.1 5.4 54 15-69 6-65 (114)
94 2kt5_A RNA and export factor-b 99.6 1.4E-15 4.7E-20 88.3 8.0 56 14-69 32-89 (124)
95 1x4b_A Heterogeneous nuclear r 99.6 2.1E-16 7.1E-21 90.8 4.4 53 17-69 27-82 (116)
96 1nu4_A U1A RNA binding domain; 99.6 1.6E-16 5.5E-21 88.5 3.8 56 14-69 5-64 (97)
97 2hgm_A HNRPF protein, heteroge 99.6 1E-15 3.6E-20 90.1 7.4 55 14-69 39-97 (126)
98 2jvr_A Nucleolar protein 3; RN 99.6 3E-16 1E-20 90.6 5.0 56 13-69 24-80 (111)
99 1u6f_A Tcubp1, RNA-binding pro 99.6 8.9E-16 3.1E-20 90.5 7.1 55 15-69 40-97 (139)
100 2j76_E EIF-4B, EIF4B, eukaryot 99.6 2.8E-16 9.5E-21 88.5 4.5 58 11-69 13-74 (100)
101 2la4_A Nuclear and cytoplasmic 99.6 9.7E-16 3.3E-20 86.0 6.6 53 14-69 24-76 (101)
102 3n9u_C Cleavage and polyadenyl 99.6 5.4E-16 1.9E-20 93.9 5.9 54 16-69 54-112 (156)
103 2lmi_A GRSF-1, G-rich sequence 99.6 4.2E-16 1.4E-20 88.7 5.0 58 12-69 6-68 (107)
104 2i2y_A Fusion protein consists 99.6 9.1E-16 3.1E-20 91.6 6.7 55 13-69 69-123 (150)
105 2cpe_A RNA-binding protein EWS 99.6 1.4E-15 4.7E-20 86.9 7.1 56 14-69 12-78 (113)
106 2dis_A Unnamed protein product 99.6 1.1E-15 3.7E-20 86.8 6.6 55 15-69 6-65 (109)
107 3p5t_L Cleavage and polyadenyl 99.6 1.7E-16 5.9E-21 87.7 3.0 53 18-70 2-59 (90)
108 1l3k_A Heterogeneous nuclear r 99.6 6.7E-16 2.3E-20 94.4 5.9 57 13-69 9-68 (196)
109 2dnn_A RNA-binding protein 12; 99.6 6.9E-16 2.4E-20 88.7 5.5 49 17-66 16-66 (109)
110 1iqt_A AUF1, heterogeneous nuc 99.6 2E-16 6.9E-21 84.4 3.1 51 19-69 1-54 (75)
111 1x4g_A Nucleolysin TIAR; struc 99.6 1.2E-15 4.1E-20 86.8 6.4 53 14-69 22-74 (109)
112 2hgl_A HNRPF protein, heteroge 99.6 4E-16 1.4E-20 92.9 4.5 54 14-67 41-99 (136)
113 2kn4_A Immunoglobulin G-bindin 99.6 2E-15 6.8E-20 90.5 7.3 55 15-69 68-125 (158)
114 1wel_A RNA-binding protein 12; 99.6 2E-16 7E-21 92.0 2.9 59 11-69 19-80 (124)
115 2xnq_A Nuclear polyadenylated 99.6 2.3E-15 7.9E-20 84.4 7.1 53 12-69 17-70 (97)
116 2e5j_A Methenyltetrahydrofolat 99.6 1.2E-15 4.2E-20 85.2 5.9 55 13-69 15-69 (97)
117 1h2v_Z 20 kDa nuclear CAP bind 99.6 1.6E-15 5.5E-20 91.0 6.8 55 15-69 37-94 (156)
118 2cq2_A Hypothetical protein LO 99.6 8.8E-16 3E-20 89.2 5.4 56 11-69 19-76 (114)
119 2dgt_A RNA-binding protein 30; 99.6 2.6E-15 8.9E-20 83.1 7.0 52 13-69 6-57 (92)
120 2cjk_A Nuclear polyadenylated 99.6 1.5E-15 5.3E-20 90.7 6.4 54 16-69 2-58 (167)
121 2hvz_A Splicing factor, argini 99.6 8.1E-16 2.8E-20 86.3 4.8 50 18-69 1-50 (101)
122 1wf1_A RNA-binding protein RAL 99.6 2.2E-15 7.4E-20 85.9 6.6 53 12-69 22-75 (110)
123 2hgn_A Heterogeneous nuclear r 99.6 3.4E-16 1.2E-20 93.5 3.2 56 13-69 42-99 (139)
124 2jvo_A Nucleolar protein 3; nu 99.6 2E-15 7E-20 86.2 6.1 51 14-69 28-78 (108)
125 2cqp_A RNA-binding protein 12; 99.6 6.4E-16 2.2E-20 86.3 3.9 57 13-69 11-70 (98)
126 2dgw_A Probable RNA-binding pr 99.6 2.4E-15 8.3E-20 82.9 6.2 56 12-68 5-62 (91)
127 2dnp_A RNA-binding protein 14; 99.6 2.4E-15 8.2E-20 82.9 6.1 52 13-69 5-56 (90)
128 2dha_A FLJ20171 protein; RRM d 99.6 3.1E-16 1.1E-20 91.9 2.6 55 14-68 20-80 (123)
129 2jwn_A Embryonic polyadenylate 99.6 1.6E-15 5.4E-20 87.9 5.5 53 17-69 36-91 (124)
130 2kvi_A Nuclear polyadenylated 99.6 2.7E-15 9.1E-20 83.8 6.0 50 15-69 8-58 (96)
131 1whx_A Hypothetical protein ri 99.6 2.1E-15 7.3E-20 86.5 5.7 51 16-69 9-59 (111)
132 2cpd_A Apobec-1 stimulating pr 99.6 1E-14 3.6E-19 81.6 8.4 51 14-69 12-64 (99)
133 3nmr_A Cugbp ELAV-like family 99.6 1.5E-15 5.3E-20 91.1 5.3 54 16-69 2-60 (175)
134 2cpx_A Hypothetical protein FL 99.6 2.1E-15 7.2E-20 86.3 5.6 57 12-69 20-80 (115)
135 3beg_B Splicing factor, argini 99.6 1.4E-15 4.7E-20 87.7 4.8 52 15-70 14-65 (115)
136 1rk8_A CG8781-PA, CG8781-PA pr 99.6 3E-15 1E-19 90.8 6.6 55 15-69 70-127 (165)
137 2ek1_A RNA-binding protein 12; 99.6 3.4E-16 1.2E-20 86.9 2.1 54 16-69 14-70 (95)
138 2hzc_A Splicing factor U2AF 65 99.6 2.8E-15 9.7E-20 81.8 5.8 52 14-68 3-65 (87)
139 1p1t_A Cleavage stimulation fa 99.6 1.4E-15 4.9E-20 85.5 4.4 54 16-69 7-63 (104)
140 2dgu_A Heterogeneous nuclear r 99.6 4.6E-15 1.6E-19 83.6 6.5 50 15-69 9-58 (103)
141 2lea_A Serine/arginine-rich sp 99.6 1.1E-15 3.7E-20 90.5 4.1 54 16-69 46-102 (135)
142 2fc9_A NCL protein; structure 99.6 3.5E-15 1.2E-19 83.7 6.0 54 13-69 11-66 (101)
143 2ki2_A SS-DNA binding protein 99.6 8.7E-16 3E-20 84.5 3.0 50 18-67 2-54 (90)
144 3q2s_C Cleavage and polyadenyl 99.6 3.2E-15 1.1E-19 95.2 5.9 56 16-71 67-127 (229)
145 2fc8_A NCL protein; structure 99.6 5.7E-15 1.9E-19 82.9 5.8 59 11-69 9-67 (102)
146 1fxl_A Paraneoplastic encephal 99.6 6.7E-15 2.3E-19 87.6 6.3 53 17-69 2-57 (167)
147 1b7f_A Protein (SXL-lethal pro 99.6 6.2E-15 2.1E-19 88.1 6.2 54 16-69 2-58 (168)
148 3egn_A RNA-binding protein 40; 99.6 2.6E-15 9E-20 89.0 4.4 58 12-69 40-105 (143)
149 3md3_A Nuclear and cytoplasmic 99.6 5.2E-15 1.8E-19 88.0 5.4 52 18-69 1-54 (166)
150 1sjr_A Polypyrimidine tract-bi 99.6 6.7E-15 2.3E-19 90.1 5.9 53 17-70 46-98 (164)
151 2f3j_A RNA and export factor b 99.6 1.1E-14 3.7E-19 89.7 6.8 55 15-69 86-142 (177)
152 3tyt_A Heterogeneous nuclear r 99.6 1.2E-14 4.1E-19 91.1 7.1 52 16-69 3-55 (205)
153 1fjc_A Nucleolin RBD2, protein 99.5 2.9E-15 9.9E-20 83.3 3.5 54 14-69 13-66 (96)
154 2voo_A Lupus LA protein; RNA-b 99.5 1.1E-14 3.7E-19 90.7 6.1 53 17-69 109-163 (193)
155 1fj7_A Nucleolin RBD1, protein 99.5 1.3E-15 4.4E-20 85.5 1.4 53 16-69 16-71 (101)
156 2adc_A Polypyrimidine tract-bi 99.5 1.4E-14 4.8E-19 91.4 6.3 56 12-69 29-85 (229)
157 3pgw_A U1-A; protein-RNA compl 99.5 2.7E-14 9.3E-19 91.9 7.7 56 15-70 7-66 (282)
158 2e5g_A U6 snRNA-specific termi 99.5 5E-14 1.7E-18 78.2 7.7 51 16-68 7-57 (94)
159 2cqh_A IGF-II mRNA-binding pro 99.5 4.7E-15 1.6E-19 82.1 3.3 52 14-69 5-57 (93)
160 1x5p_A Negative elongation fac 99.5 7.1E-14 2.4E-18 77.9 8.1 53 12-69 10-62 (97)
161 2qfj_A FBP-interacting repress 99.5 3.5E-14 1.2E-18 87.8 7.1 53 17-69 28-83 (216)
162 3pgw_S U1-70K; protein-RNA com 99.5 3E-14 1E-18 97.9 7.3 58 15-72 100-160 (437)
163 1l3k_A Heterogeneous nuclear r 99.5 3.5E-14 1.2E-18 86.7 6.7 54 16-69 103-159 (196)
164 3nmr_A Cugbp ELAV-like family 99.5 2.4E-14 8.3E-19 85.8 5.8 56 15-70 93-150 (175)
165 2e5i_A Heterogeneous nuclear r 99.5 8.1E-14 2.8E-18 81.8 7.8 52 19-73 27-79 (124)
166 2e44_A Insulin-like growth fac 99.5 3.6E-14 1.2E-18 78.8 6.0 54 15-69 13-67 (96)
167 3md3_A Nuclear and cytoplasmic 99.5 6.5E-14 2.2E-18 83.2 7.3 57 13-69 83-142 (166)
168 3zzy_A Polypyrimidine tract-bi 99.5 3.9E-14 1.3E-18 83.9 6.2 50 18-69 29-79 (130)
169 2lcw_A RNA-binding protein FUS 99.3 1.5E-15 5E-20 87.3 0.0 58 15-72 5-73 (116)
170 1wg1_A KIAA1579 protein, homol 99.5 1.2E-14 4E-19 79.9 3.6 50 16-69 4-53 (88)
171 2g4b_A Splicing factor U2AF 65 99.5 5.7E-14 2E-18 84.2 6.8 58 14-71 91-151 (172)
172 2ghp_A U4/U6 snRNA-associated 99.5 3.7E-14 1.3E-18 91.7 6.2 56 14-69 38-94 (292)
173 4f02_A Polyadenylate-binding p 99.5 3.1E-14 1.1E-18 89.0 5.6 53 17-69 103-156 (213)
174 2cjk_A Nuclear polyadenylated 99.5 5E-14 1.7E-18 84.1 5.1 53 17-69 87-142 (167)
175 3tht_A Alkylated DNA repair pr 99.5 1.5E-13 5.1E-18 92.3 7.2 59 8-69 9-69 (345)
176 1b7f_A Protein (SXL-lethal pro 99.5 2E-13 6.7E-18 81.5 7.0 57 14-70 86-145 (168)
177 1qm9_A Polypyrimidine tract-bi 99.5 6E-14 2E-18 86.2 4.8 53 17-71 3-56 (198)
178 2yh0_A Splicing factor U2AF 65 99.5 2.4E-13 8.4E-18 83.0 7.4 57 15-71 112-171 (198)
179 3sde_A Paraspeckle component 1 99.5 1.8E-13 6.2E-18 87.8 6.8 52 15-69 20-71 (261)
180 2qfj_A FBP-interacting repress 99.4 2.5E-13 8.5E-18 83.9 6.9 55 16-70 124-181 (216)
181 1fxl_A Paraneoplastic encephal 99.4 2.1E-13 7.1E-18 81.1 6.0 56 15-70 86-144 (167)
182 3tyt_A Heterogeneous nuclear r 99.4 1.3E-13 4.4E-18 86.4 5.1 57 16-72 122-181 (205)
183 2j8a_A Histone-lysine N-methyl 99.4 1.3E-13 4.6E-18 81.7 4.8 48 18-65 3-57 (136)
184 2bz2_A Negative elongation fac 99.4 2.3E-13 7.9E-18 79.2 5.6 52 13-69 35-86 (121)
185 3pgw_A U1-A; protein-RNA compl 99.4 6.1E-13 2.1E-17 85.6 7.4 53 16-70 206-258 (282)
186 3u1l_A PRE-mRNA-splicing facto 99.4 2.5E-13 8.4E-18 87.4 5.1 52 15-69 132-192 (240)
187 1fje_B Nucleolin RBD12, protei 99.4 6.1E-13 2.1E-17 80.1 6.5 53 15-69 97-149 (175)
188 3smz_A Protein raver-1, ribonu 99.4 7.4E-13 2.5E-17 85.2 6.6 50 16-69 21-70 (284)
189 3sde_A Paraspeckle component 1 99.4 5.7E-13 2E-17 85.5 6.0 54 16-69 95-150 (261)
190 2ghp_A U4/U6 snRNA-associated 99.4 8.9E-13 3.1E-17 85.1 6.5 56 14-69 207-267 (292)
191 2diu_A KIAA0430 protein; struc 99.4 1.5E-12 5.1E-17 73.3 6.4 48 17-71 8-61 (96)
192 2dit_A HIV TAT specific factor 99.4 2.4E-12 8.1E-17 73.6 7.2 56 13-69 11-77 (112)
193 1qm9_A Polypyrimidine tract-bi 99.4 2.1E-12 7.2E-17 79.2 7.1 52 16-69 119-171 (198)
194 2g4b_A Splicing factor U2AF 65 99.4 1.2E-12 4.2E-17 78.3 5.8 51 16-69 3-64 (172)
195 3smz_A Protein raver-1, ribonu 99.3 1.8E-12 6.1E-17 83.4 6.5 54 16-69 94-150 (284)
196 2adc_A Polypyrimidine tract-bi 99.3 3.4E-12 1.2E-16 80.5 7.0 52 16-69 150-202 (229)
197 2pe8_A Splicing factor 45; RRM 99.3 3.6E-12 1.2E-16 72.6 6.3 56 14-69 5-69 (105)
198 1fje_B Nucleolin RBD12, protei 99.3 3.7E-13 1.3E-17 81.1 1.8 57 13-69 9-67 (175)
199 2yh0_A Splicing factor U2AF 65 99.3 3.1E-12 1.1E-16 78.1 5.8 51 16-69 3-64 (198)
200 2d9o_A DNAJ (HSP40) homolog, s 99.2 8.7E-11 3E-15 66.5 8.2 51 17-69 10-67 (100)
201 1owx_A Lupus LA protein, SS-B, 99.2 1.5E-10 5E-15 67.7 7.0 52 11-65 12-64 (121)
202 3v4m_A Splicing factor U2AF 65 99.1 1.2E-10 4.2E-15 66.2 5.5 55 15-69 3-72 (105)
203 1jmt_A Splicing factor U2AF 35 99.0 4.8E-11 1.7E-15 67.7 0.6 48 22-69 20-81 (104)
204 3s6e_A RNA-binding protein 39; 98.9 3.7E-09 1.3E-13 61.0 6.7 56 13-69 3-68 (114)
205 3ue2_A Poly(U)-binding-splicin 98.9 2E-09 6.7E-14 62.4 4.9 54 16-69 19-84 (118)
206 2dnr_A Synaptojanin-1; RRM dom 98.1 1E-05 3.5E-10 45.0 6.1 53 16-73 6-66 (91)
207 1ufw_A Synaptojanin 2; RNP dom 97.8 1.3E-05 4.5E-10 44.8 3.0 54 15-73 13-75 (95)
208 3dxb_A Thioredoxin N-terminall 97.7 2.4E-05 8.1E-10 48.7 3.5 41 29-69 141-188 (222)
209 1whv_A Poly(A)-specific ribonu 97.7 0.00014 4.9E-09 40.8 6.0 51 13-69 12-62 (100)
210 2l9w_A U4/U6 snRNA-associated- 97.6 0.00018 6.3E-09 41.3 5.4 56 11-69 15-75 (117)
211 3ctr_A Poly(A)-specific ribonu 97.4 0.00023 7.8E-09 40.1 4.2 46 18-69 7-52 (101)
212 2dhx_A Poly (ADP-ribose) polym 97.4 0.0014 4.9E-08 37.0 7.2 50 16-77 7-61 (104)
213 1uw4_A UPF3X; nonsense mediate 97.2 0.0029 9.8E-08 34.9 6.9 52 18-69 2-58 (91)
214 3pq1_A Poly(A) RNA polymerase; 97.0 0.00059 2E-08 47.5 3.6 50 18-70 54-103 (464)
215 1wwh_A Nucleoporin 35, nucleop 95.8 0.031 1.1E-06 32.2 5.5 52 16-78 23-74 (119)
216 2l08_A Regulator of nonsense t 95.5 0.018 6.2E-07 32.1 3.6 53 17-69 9-66 (97)
217 2kn4_A Immunoglobulin G-bindin 93.8 0.026 8.9E-07 32.8 1.6 22 47-68 3-25 (158)
218 3d45_A Poly(A)-specific ribonu 93.6 0.22 7.4E-06 34.9 6.3 44 17-66 440-483 (507)
219 1wey_A Calcipressin 1; structu 87.1 1.3 4.3E-05 24.9 4.3 52 17-71 5-61 (104)
220 3p3d_A Nucleoporin 53; structu 86.5 0.24 8.2E-06 29.0 1.1 28 18-46 8-35 (132)
221 3swz_A Steroid 17-alpha-hydrox 81.1 2.1 7.1E-05 28.6 4.1 45 6-50 3-51 (494)
222 3ts2_A Protein LIN-28 homolog 75.9 0.53 1.8E-05 27.8 -0.1 27 33-64 3-29 (148)
223 3pm0_A Cypib1, cytochrome P450 73.1 3.4 0.00012 27.5 3.4 47 4-50 2-50 (507)
224 4e8u_A Putative uncharacterize 72.4 9.4 0.00032 23.2 4.9 48 18-65 13-71 (172)
225 3fut_A Dimethyladenosine trans 69.8 6.4 0.00022 25.1 4.0 32 18-50 111-142 (271)
226 3tbg_A Cytochrome P450 2D6; mo 69.5 2 6.7E-05 28.4 1.5 41 10-50 9-52 (479)
227 3e6i_A CYPIIE1, P450-J, cytoch 66.0 3.5 0.00012 27.2 2.2 42 9-50 8-52 (476)
228 3uzu_A Ribosomal RNA small sub 60.8 3.9 0.00013 26.2 1.6 33 18-50 115-147 (279)
229 3tqs_A Ribosomal RNA small sub 56.0 3.2 0.00011 26.2 0.6 32 19-50 98-129 (255)
230 1qyr_A KSGA, high level kasuga 55.8 12 0.0004 23.5 3.2 29 19-47 92-120 (252)
231 2k5n_A Putative cold-shock pro 51.4 8.2 0.00028 19.9 1.7 11 55-65 13-23 (74)
232 2e5p_A Protein PHF1, PHD finge 50.9 9.9 0.00034 19.5 1.8 24 42-70 28-51 (68)
233 1i4w_A Mitochondrial replicati 50.6 9.9 0.00034 25.4 2.3 22 19-40 144-165 (353)
234 3ftd_A Dimethyladenosine trans 49.1 11 0.00037 23.6 2.3 24 18-41 96-119 (249)
235 2kcm_A Cold shock domain famil 48.6 9.6 0.00033 19.7 1.7 11 55-65 11-21 (74)
236 1ytr_A Bacteriocin plantaricin 42.3 17 0.00057 14.7 1.5 12 31-42 14-25 (26)
237 3ulj_A LIN28B, DNA-binding pro 41.5 23 0.0008 19.0 2.5 9 55-63 19-27 (90)
238 1po5_A Cytochrome P450 2B4; ox 40.9 16 0.00054 24.3 2.2 39 11-49 10-51 (476)
239 1igq_A Transcriptional repress 40.7 26 0.00088 17.7 2.4 20 46-65 21-42 (62)
240 3cam_A Cold-shock domain famil 38.3 15 0.00052 18.4 1.4 11 55-65 12-22 (67)
241 1c9o_A CSPB, cold-shock protei 38.0 15 0.00052 18.2 1.4 11 55-65 12-22 (66)
242 3a0j_A Cold shock protein; OB- 36.6 16 0.00056 18.6 1.4 11 55-65 12-22 (73)
243 1h95_A CSD, Y-box binding prot 35.6 17 0.00059 18.8 1.4 11 55-65 19-29 (79)
244 1g6p_A Cold shock protein TMCS 35.4 18 0.00061 18.0 1.4 11 55-65 11-21 (66)
245 3qz1_A Steroid 21-hydroxylase; 34.7 50 0.0017 21.7 3.9 37 10-49 28-64 (496)
246 4gdk_A Ubiquitin-like protein 34.6 22 0.00074 19.1 1.7 29 11-39 44-75 (91)
247 3i2z_B RNA chaperone, negative 33.6 20 0.00067 18.2 1.4 11 55-65 16-26 (71)
248 2od0_A Hypothetical protein VP 33.0 51 0.0017 17.6 3.1 21 30-50 5-25 (105)
249 2fdv_A Cytochrome P450 2A6; CY 32.9 25 0.00086 23.3 2.1 39 11-49 10-51 (476)
250 2eqj_A Metal-response element- 32.8 29 0.001 17.7 1.9 23 42-69 32-54 (66)
251 2m0o_A PHD finger protein 1; t 30.7 31 0.0011 18.2 1.8 23 42-69 45-67 (79)
252 2yty_A Cold shock domain-conta 29.8 24 0.00082 18.7 1.4 10 56-65 28-37 (88)
253 2ytx_A Cold shock domain-conta 29.1 25 0.00085 19.0 1.4 11 55-65 27-37 (97)
254 2jsh_A Appetite-regulating hor 28.7 21 0.00073 14.8 0.8 21 24-44 2-22 (26)
255 4hcz_A PHD finger protein 1; p 28.7 44 0.0015 16.6 2.1 23 42-69 22-44 (58)
256 1wfq_A UNR protein; beta-barre 28.4 26 0.0009 18.6 1.4 10 56-65 28-37 (89)
257 2e5q_A PHD finger protein 19; 28.2 64 0.0022 16.2 3.0 21 55-75 34-54 (63)
258 4aj5_1 SKA3, spindle and kinet 26.9 26 0.00089 19.4 1.2 11 32-42 91-101 (101)
259 3dax_A Cytochrome P450 7A1; ch 26.3 40 0.0014 22.2 2.2 41 10-50 12-55 (491)
260 1eij_A Hypothetical protein MT 24.9 56 0.0019 17.2 2.2 19 23-41 50-68 (80)
261 1x65_A UNR protein; cell-free 24.8 21 0.00073 19.0 0.6 10 56-65 18-27 (89)
262 3aqq_A Calcium-regulated heat 24.4 49 0.0017 19.4 2.1 11 55-65 73-83 (147)
263 2ko4_A Mediator of RNA polymer 24.3 54 0.0018 17.4 2.1 19 22-40 29-48 (81)
264 2ytv_A Cold shock domain-conta 24.2 31 0.001 17.9 1.1 10 56-65 18-27 (79)
265 2lss_A Cold shock-like protein 29.7 16 0.00056 18.4 0.0 11 55-65 15-25 (70)
266 1ik9_C DNA ligase IV; DNA END 22.7 63 0.0021 14.3 2.2 15 27-41 20-34 (37)
267 3pc6_A DNA repair protein XRCC 22.6 97 0.0033 16.8 3.0 29 16-44 9-37 (104)
268 2xk0_A Polycomb protein PCL; t 22.2 50 0.0017 17.0 1.6 23 56-78 41-63 (69)
269 3l3e_A DNA topoisomerase 2-bin 21.8 71 0.0024 16.9 2.4 32 13-45 14-45 (107)
270 3i3k_A Lanosterol 14-alpha dem 21.0 17 0.00059 23.9 -0.4 42 9-50 9-53 (461)
271 1r9o_A Cytochrome P450 2C9; mo 21.0 90 0.0031 20.5 3.2 39 11-49 11-52 (477)
272 3v8d_A Cholesterol 7-alpha-mon 20.2 57 0.0019 21.6 2.0 45 6-50 8-55 (491)
273 2bh8_A 1B11; transcription, mo 20.1 49 0.0017 17.7 1.5 9 56-64 28-36 (101)
No 1
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.76 E-value=2.4e-18 Score=95.55 Aligned_cols=54 Identities=13% Similarity=0.199 Sum_probs=44.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCM 67 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~ 67 (80)
.++.+..+|||+|||+++++++|+++|++||.|.+++++.+ ++|||||+|.+.+
T Consensus 6 ~~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~ 59 (89)
T 3d2w_A 6 HHHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDK 59 (89)
T ss_dssp -----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHH
Confidence 44556799999999999999999999999999999999875 6999999994333
No 2
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.75 E-value=4.2e-18 Score=97.74 Aligned_cols=59 Identities=68% Similarity=1.097 Sum_probs=52.4
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+.|+.++++|||+|||+.+++++|+++|++||.|..+++..++.++|||||+|.+.++|
T Consensus 2 r~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A 60 (115)
T 3lqv_A 2 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDA 60 (115)
T ss_dssp -CCTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHH
Confidence 56778889999999999999999999999999999999998888899999999554444
No 3
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=7.9e-18 Score=95.78 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=48.7
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 10 VRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+....++++|||+|||+.+++++|+++|++||.|.++.++.+ +|||||+|++.++|
T Consensus 8 ~~~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A 64 (101)
T 2cq1_A 8 DKMDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAA 64 (101)
T ss_dssp CCCCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHH
T ss_pred CCccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHH
Confidence 3455566799999999999999999999999999999988765 79999999655544
No 4
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=3.9e-18 Score=97.87 Aligned_cols=56 Identities=16% Similarity=0.108 Sum_probs=48.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
-.+.+.++|||+|||+++++++|+++|++||.|.+++++.+ +|||||+|++.++|.
T Consensus 11 ~~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~ 66 (105)
T 1sjq_A 11 GSGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAAN 66 (105)
T ss_dssp -CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHH
Confidence 34556799999999999999999999999999999999865 799999996555443
No 5
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.74 E-value=4.1e-18 Score=96.29 Aligned_cols=54 Identities=15% Similarity=0.148 Sum_probs=46.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.+++|||+|||+++++++|+++|++||.|.++++..++. ++|||||+|.+.++|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A 74 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHH
Confidence 357899999999999999999999999999999988764 479999999444444
No 6
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.6e-17 Score=94.54 Aligned_cols=59 Identities=25% Similarity=0.284 Sum_probs=50.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..++...++|||+|||+.+++++|+++|++||.|..+++..++.++|||||+|.+.++|
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A 74 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDA 74 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHH
Confidence 34445678999999999999999999999999999999988877899999999554444
No 7
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.73 E-value=4.6e-18 Score=98.09 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=46.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC-CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~-~~G~afv~f~~~~~~ 69 (80)
..+|||+|||+++++++|+++|++||.|.+|+++.+.. ++|||||+|.+.++|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A 58 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAA 58 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHH
Confidence 46899999999999999999999999999999988765 589999999554444
No 8
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.7e-17 Score=93.38 Aligned_cols=55 Identities=13% Similarity=0.097 Sum_probs=47.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
...++++|||+|||+.+++++|+++|++||.|.++.+..+ +|||||+|++.++|.
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~ 65 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAK 65 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHH
Confidence 3455699999999999999999999999999999988753 799999996555443
No 9
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.3e-17 Score=97.55 Aligned_cols=56 Identities=18% Similarity=0.167 Sum_probs=48.3
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+....++++|||+|||+++++++|+++|++||.|.+++++.+ +|||||+|++.++|
T Consensus 25 ~~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A 80 (119)
T 2ad9_A 25 RSAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAA 80 (119)
T ss_dssp TSCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHH
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHH
Confidence 444556799999999999999999999999999999998865 79999999655554
No 10
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.72 E-value=1.5e-17 Score=95.66 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=48.0
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.+.++|||+|||+.+++++|+++|++||.|.+++++.|+. ++|||||+|.+.++|
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A 61 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGA 61 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHH
Confidence 3458999999999999999999999999999999988765 479999999555444
No 11
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.9e-17 Score=94.31 Aligned_cols=55 Identities=18% Similarity=0.193 Sum_probs=47.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
...++|||+|||+++++++|.++|++||.|.+|+++.++. ++|||||+|.+.++|
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a 65 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESA 65 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHH
Confidence 3458999999999999999999999999999999988754 689999999544443
No 12
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3e-17 Score=89.63 Aligned_cols=56 Identities=16% Similarity=0.069 Sum_probs=47.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+.++++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a 60 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAA 60 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHH
Confidence 45679999999999999999999999999999999987753 589999999444333
No 13
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=9.7e-17 Score=90.42 Aligned_cols=58 Identities=14% Similarity=0.274 Sum_probs=49.4
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC-CCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-TRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~-~~G~afv~f~~~~~~ 69 (80)
.++...++|||+|||+.+++++|+++|++||.|..|++..+.. ++|||||+|.+.++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a 68 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 68 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHH
Confidence 4445679999999999999999999999999999999987754 589999999554444
No 14
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=5.7e-17 Score=91.61 Aligned_cols=60 Identities=20% Similarity=0.373 Sum_probs=50.2
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC----CCcEEEEEecccccc
Q psy10279 9 NVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD----TRYLTKSLVMKCMIF 69 (80)
Q Consensus 9 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~----~~G~afv~f~~~~~~ 69 (80)
..+.+..+.++|||+|||+.+++++|+++|++|| |..|+++.+.. ++|||||+|.+.++|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a 70 (104)
T 1wi8_A 7 GSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSL 70 (104)
T ss_dssp CCCCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHH
T ss_pred CCCCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHH
Confidence 3456666779999999999999999999999999 99999988754 489999999444433
No 15
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.71 E-value=3.4e-17 Score=89.76 Aligned_cols=57 Identities=18% Similarity=0.321 Sum_probs=48.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.+.+.++|||+|||+.+++++|+++|++||.|..++++.++. ++|||||+|.+.+++
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a 66 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASV 66 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHH
Confidence 345668999999999999999999999999999999987754 479999999554444
No 16
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=2.8e-17 Score=93.77 Aligned_cols=55 Identities=16% Similarity=0.033 Sum_probs=47.2
Q ss_pred CCCCCCcEEEEecCCC-CCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPY-KITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~-~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
....++++|||+|||+ .+++++|+++|++||.|.+++++.+ +|||||+|++.++|
T Consensus 10 ~~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A 65 (102)
T 1x4d_A 10 GRVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDA 65 (102)
T ss_dssp CCCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHH
T ss_pred CCCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHH
Confidence 3445679999999999 9999999999999999999999865 58999999555444
No 17
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=7.7e-17 Score=91.73 Aligned_cols=58 Identities=16% Similarity=0.331 Sum_probs=49.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..+.+.++|||+|||+.+++++|+++|++||.|..|++..++. ++|||||+|.+.++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A 70 (111)
T 1x4h_A 10 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAA 70 (111)
T ss_dssp CCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHH
T ss_pred CcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHH
Confidence 3445578999999999999999999999999999999998754 589999999554444
No 18
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.4e-16 Score=91.57 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=49.6
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
...+...++|||+|||+.+++++|+++|++||.|..|++..++. ++|||||+|.+.++|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 72 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAA 72 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHH
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 34445679999999999999999999999999999999988754 589999999444433
No 19
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=9.2e-17 Score=89.03 Aligned_cols=60 Identities=23% Similarity=0.441 Sum_probs=50.0
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 10 VRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
...++.+.++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A 71 (94)
T 2e5h_A 9 SGGLAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSA 71 (94)
T ss_dssp CCSCCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHH
Confidence 334455678999999999999999999999999999999988754 589999999544443
No 20
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.70 E-value=5.5e-17 Score=92.38 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=46.6
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
....++++|||+|||+++++++|+++|++||.|.++++++ .+|+|||+|++.++|
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A 70 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGA 70 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHH
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHH
Confidence 3445679999999999999999999999999999998874 479999999554444
No 21
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-18 Score=94.29 Aligned_cols=53 Identities=17% Similarity=0.222 Sum_probs=46.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCC-CEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYG-AIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G-~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+.+|||+|||+++++++|+++|++|| .|.+|+++.++. ++|||||+|.+.++|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A 57 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDA 57 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHH
Confidence 36899999999999999999999999 799999988754 589999999554444
No 22
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.7e-17 Score=90.62 Aligned_cols=57 Identities=14% Similarity=0.139 Sum_probs=48.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC-CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~-~~G~afv~f~~~~~~ 69 (80)
.....++|||+|||+.+++++|+++|++||.|..|++..++. ++|||||+|.+.++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a 68 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDA 68 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHH
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHH
Confidence 345569999999999999999999999999999999988755 589999999444443
No 23
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=90.75 Aligned_cols=55 Identities=15% Similarity=0.291 Sum_probs=47.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhcc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
..+++|||+|||+.+++++|+++|++||.|.++++..+ ++|||||+| .+.++|++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f-------~~~~~a~~ 57 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTF-------ADDQIAQS 57 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEEC-------SCHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEE-------CCHHHHHH
Confidence 34689999999999999999999999999999998865 689999999 55555543
No 24
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=1.2e-16 Score=89.51 Aligned_cols=57 Identities=11% Similarity=0.202 Sum_probs=48.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
++.+.++|||+|||+.+++++|+++|++||.|..++++.++. ++|||||+|.+.++|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 65 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSV 65 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHH
Confidence 345569999999999999999999999999999999988754 589999999544444
No 25
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.8e-17 Score=91.01 Aligned_cols=57 Identities=11% Similarity=0.239 Sum_probs=49.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHH----HHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMY----DIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~----~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+....++|||+|||+.+++++|+ ++|++||.|.++++..++.++|||||+|.+.++|
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A 65 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDA 65 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHH
Confidence 34456899999999999999999 9999999999999998877799999999544444
No 26
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=4.7e-17 Score=90.27 Aligned_cols=60 Identities=22% Similarity=0.258 Sum_probs=50.4
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 10 VRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.+.++.+.++|||+|||+.+++++|+++|++||.|..+.+..++. ++|||||+|.+.++|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A 70 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 70 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHH
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHH
Confidence 445556679999999999999999999999999999999988754 479999999544444
No 27
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=90.39 Aligned_cols=58 Identities=9% Similarity=0.091 Sum_probs=49.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..+.+.++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 70 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 70 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHH
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHH
Confidence 3445679999999999999999999999999999999988753 589999999544444
No 28
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.70 E-value=3.4e-17 Score=90.96 Aligned_cols=59 Identities=14% Similarity=0.294 Sum_probs=49.2
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
+.++...++|||+|||+.+++++|+++|++||.|.++++..++. ++|||||+|.+.++|
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a 70 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESV 70 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHH
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHH
Confidence 34455679999999999999999999999999999999987754 479999999555444
No 29
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.1e-16 Score=88.93 Aligned_cols=56 Identities=21% Similarity=0.281 Sum_probs=48.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+.++++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a 60 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECA 60 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHH
Confidence 45679999999999999999999999999999999988754 589999999554444
No 30
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.69 E-value=1.5e-16 Score=91.59 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=48.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
....++|||+|||+++++++|+++|++||.|.++++..++. ++|||||+|.+.+.+
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A 95 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSA 95 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHH
Confidence 34568999999999999999999999999999999987753 589999999554444
No 31
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.69 E-value=1.2e-16 Score=90.20 Aligned_cols=55 Identities=15% Similarity=0.235 Sum_probs=47.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
..+++|||+|||+.+++++|+++|++||.|..+++..+.. ++|||||+|.+.++|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 69 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEA 69 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHH
Confidence 4569999999999999999999999999999999988764 379999999554444
No 32
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-16 Score=90.08 Aligned_cols=60 Identities=20% Similarity=0.240 Sum_probs=50.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccC
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVN 72 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~ 72 (80)
...+.++|||+|||+.+++++|+++|++||.|..+.+..+.. ++|||||+|.+.++|...
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A 71 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDA 71 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHH
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHH
Confidence 334569999999999999999999999999999999988754 589999999665555333
No 33
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=5.8e-17 Score=91.63 Aligned_cols=60 Identities=13% Similarity=0.146 Sum_probs=50.5
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 10 VRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
....+...++|||+|||+.+++++|+++|++||.|..|++..++. ++|||||+|.+.++|
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a 71 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCV 71 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHH
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHH
Confidence 344456679999999999999999999999999999999988754 479999999555444
No 34
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=1.5e-16 Score=90.20 Aligned_cols=57 Identities=11% Similarity=0.136 Sum_probs=47.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEE-EEEccCCC--CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQ-IRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~-~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
+....++|||+|||+.+++++|+++|++||.|.. ++++.+.. ++|||||+|.+.+++
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a 70 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIA 70 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHH
Confidence 3455689999999999999999999999999987 88877643 589999999444433
No 35
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.69 E-value=7.5e-17 Score=91.20 Aligned_cols=59 Identities=10% Similarity=0.142 Sum_probs=50.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..++...++|||+|||+.+++++|+++|++||.|..|+++.++. ++|||||+|.+.++|
T Consensus 7 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A 68 (106)
T 2dgp_A 7 GMKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESA 68 (106)
T ss_dssp SCCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHH
Confidence 34455679999999999999999999999999999999988754 689999999554444
No 36
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.7e-16 Score=89.75 Aligned_cols=57 Identities=14% Similarity=0.348 Sum_probs=48.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccC-CC---CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNT-PD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~-~~---~~G~afv~f~~~~~~ 69 (80)
.....++|||+|||+.+++++|+++|++||.|..|++..+ +. ++|||||+|.+.++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a 71 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 71 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHH
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHH
Confidence 3455689999999999999999999999999999999877 22 589999999554444
No 37
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.69 E-value=7.9e-17 Score=87.74 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=47.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+.+.++|||+|||+.+++++|+++|++||.|..++++.++. ++|||||+|.+.++|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 62 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 62 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHH
Confidence 45679999999999999999999999999999999987644 489999999544444
No 38
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=9.3e-17 Score=90.50 Aligned_cols=59 Identities=12% Similarity=0.237 Sum_probs=49.1
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+.+..+.++|||+|||+.+++++|+++|++||.|..|+++.++. ++|||||+|.+.++|
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a 70 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQ 70 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHH
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHH
Confidence 34445568999999999999999999999999999999988754 479999999444433
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=1.6e-16 Score=89.15 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=48.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
++.+.++|||+|||+.+++++|+++|++||.|..+++..+.. ++|||||+|.+.++|
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a 71 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQA 71 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHH
Confidence 344568999999999999999999999999999999988764 469999999544444
No 40
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.68 E-value=8.6e-17 Score=92.01 Aligned_cols=54 Identities=17% Similarity=0.341 Sum_probs=45.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCM 67 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~ 67 (80)
+...++|||+|||+.+++++|+++|++||.|..|++..++. ++|||||+|.+.+
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~ 78 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQA 78 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHH
Confidence 34568999999999999999999999999999999988753 5899999994433
No 41
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.68 E-value=1.1e-16 Score=94.19 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=50.0
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+.++.++++|||+|||+.+++++|+++|++||.|..|++..++. ++|||||+|.+.++|
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A 101 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 101 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHH
Confidence 34455678999999999999999999999999999999987754 589999999554444
No 42
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.1e-16 Score=90.23 Aligned_cols=61 Identities=15% Similarity=0.148 Sum_probs=50.7
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCC-CCCcEEEEEecccccc
Q psy10279 9 NVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP-DTRYLTKSLVMKCMIF 69 (80)
Q Consensus 9 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~-~~~G~afv~f~~~~~~ 69 (80)
..+.++...++|||+|||+.+++++|+++|++||.|..+++..+. .++|||||+|.+.++|
T Consensus 7 ~~~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A 68 (103)
T 2d9p_A 7 GDRITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEA 68 (103)
T ss_dssp CCCCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHH
T ss_pred CCccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHH
Confidence 344555677999999999999999999999999999999998772 2479999999554444
No 43
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=7.1e-17 Score=88.27 Aligned_cols=56 Identities=13% Similarity=0.119 Sum_probs=46.3
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..+.++|||+|||+.+++++|+++|++||.|.++++..++. ++|||||+|.+.++|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 61 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 61 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHH
Confidence 34568999999999999999999999999999999987753 479999999544444
No 44
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.1e-16 Score=88.43 Aligned_cols=56 Identities=16% Similarity=0.263 Sum_probs=47.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+.+.++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 63 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHA 63 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHH
Confidence 34568999999999999999999999999999999988753 579999999544444
No 45
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.68 E-value=1.5e-16 Score=89.68 Aligned_cols=60 Identities=22% Similarity=0.332 Sum_probs=50.1
Q ss_pred CCCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 9 NVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 9 ~~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
....++.+.++|||+|||+.+++++|+++|++|| |..|+++.++. ++|||||+|.+.++|
T Consensus 7 ~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a 69 (103)
T 2dng_A 7 GKELPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSL 69 (103)
T ss_dssp CCCCCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHH
T ss_pred CCCCCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHH
Confidence 3456667779999999999999999999999997 99999988764 479999999544433
No 46
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.68 E-value=8.8e-17 Score=92.26 Aligned_cols=58 Identities=10% Similarity=0.155 Sum_probs=48.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
......++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.+.+
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a 80 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA 80 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHH
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHH
Confidence 3344568999999999999999999999999999999988764 479999999544444
No 47
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.68 E-value=1.7e-16 Score=88.56 Aligned_cols=54 Identities=17% Similarity=0.332 Sum_probs=46.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
++++|||+|||+.+++++|+++|++||.|.++++..++. ++|||||+|.+.++|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A 57 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESS 57 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHH
Confidence 358999999999999999999999999999999988754 589999999544444
No 48
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=3.1e-17 Score=92.37 Aligned_cols=56 Identities=14% Similarity=0.168 Sum_probs=46.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCC--EEEEEEccCCC---CCcEEEEEeccccccccC
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGA--IRQIRIGNTPD---TRYLTKSLVMKCMIFLVN 72 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~--i~~~~l~~~~~---~~G~afv~f~~~~~~~~~ 72 (80)
-.+|||+|||+.+|+++|+++|++||. +.+|++++|+. ++|||||+|.+.++|...
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~A 69 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQL 69 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHH
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHH
Confidence 468999999999999999999999995 56899888754 589999999655555333
No 49
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=1.9e-16 Score=90.78 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=49.3
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.......++|||+|||+.+++++|+++|++||.|..|++..++. ++|||||+|.+.++|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 70 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDA 70 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 34445679999999999999999999999999999999988753 479999999544444
No 50
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=89.31 Aligned_cols=60 Identities=13% Similarity=0.130 Sum_probs=50.3
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEE--------EEEccCCC---CCcEEEEEecccccc
Q psy10279 10 VRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQ--------IRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
...++...++|||+|||+.+++++|+++|++||.|.. +++..++. ++|||||+|.+.+++
T Consensus 6 ~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a 76 (99)
T 2la6_A 6 HHHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSA 76 (99)
T ss_dssp SCCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHH
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHH
Confidence 3455666799999999999999999999999999999 99988754 479999999554444
No 51
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.3e-16 Score=89.87 Aligned_cols=58 Identities=12% Similarity=0.196 Sum_probs=48.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
....+.++|||+|||+.+++++|+++|++||.|..|++..++. ++|||||+|.+.++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 70 (103)
T 2cq0_A 10 RRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDA 70 (103)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHH
Confidence 3445579999999999999999999999999999999987753 479999999544444
No 52
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=93.60 Aligned_cols=56 Identities=14% Similarity=0.143 Sum_probs=47.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMY----DIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~----~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..++++|||+|||+.+++++|+ ++|++||.|.+|.+..++.++|||||+|.+.++|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A 85 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESA 85 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHH
Confidence 3456899999999999999865 7999999999999887777899999999554444
No 53
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=1.1e-16 Score=92.65 Aligned_cols=54 Identities=17% Similarity=0.192 Sum_probs=46.6
Q ss_pred CCCCCcEEEEecCCCC-CCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYK-ITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~-~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
...++++|||+|||++ +++++|+++|++||.|.++++.. ++|||||+|++.++|
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A 75 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDA 75 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHH
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHH
Confidence 3456799999999998 99999999999999999999874 479999999655544
No 54
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=1.9e-16 Score=88.95 Aligned_cols=57 Identities=14% Similarity=0.232 Sum_probs=48.7
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.+.+.++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 67 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 67 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHH
Confidence 345569999999999999999999999999999999988654 589999999554444
No 55
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.67 E-value=1.8e-16 Score=87.58 Aligned_cols=57 Identities=16% Similarity=0.167 Sum_probs=47.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC-CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~-~~G~afv~f~~~~~~ 69 (80)
++.+.++|||+|||+.+++++|+++|++||.|..+++..+.. ++|||||+|.+.++|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a 61 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVA 61 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHH
Confidence 345669999999999999999999999999999999887533 579999999544444
No 56
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=86.22 Aligned_cols=53 Identities=17% Similarity=0.110 Sum_probs=44.0
Q ss_pred CcEEEEecCCCCC------CHHHHHHHhhcCCCEEEEEEccC-CCCCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKI------TGDEMYDIFGKYGAIRQIRIGNT-PDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~------~~~~l~~~F~~~G~i~~~~l~~~-~~~~G~afv~f~~~~~~ 69 (80)
+++|||+|||+.+ ++++|+++|++||.|.++++..+ +.++|||||+|.+.++|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A 60 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHA 60 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHH
Confidence 3789999999999 77999999999999999998743 23689999999544443
No 57
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=89.40 Aligned_cols=57 Identities=9% Similarity=0.030 Sum_probs=48.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEE-EEEEccCCC---CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIR-QIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~-~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+....++|||+|||+.+++++|+++|++||.|. .+++..++. ++|||||+|.+.++|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a 65 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATA 65 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHH
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHH
Confidence 345679999999999999999999999999999 999988764 479999999544433
No 58
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.67 E-value=1e-16 Score=100.36 Aligned_cols=59 Identities=19% Similarity=0.151 Sum_probs=46.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..|..+.++|||+|||+++++++|+++|++||.|.+|+++.++. ++|||||+|.+.++|
T Consensus 9 ~~p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A 70 (213)
T 4f02_A 9 SAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADA 70 (213)
T ss_dssp ------CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHH
Confidence 44556678999999999999999999999999999999988764 479999999544444
No 59
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.3e-16 Score=89.61 Aligned_cols=56 Identities=20% Similarity=0.206 Sum_probs=48.2
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+.+.++|||+|||+.+++++|+++|++||.|..++++.++. ++|||||+|.+.++|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 67 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 67 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHH
Confidence 45569999999999999999999999999999999987744 589999999554444
No 60
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.6e-16 Score=89.79 Aligned_cols=55 Identities=16% Similarity=0.227 Sum_probs=47.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..+++|||+|||+.+++++|+++|++||.|..+.+..++. ++|||||+|.+.++|
T Consensus 21 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 78 (106)
T 1p27_B 21 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEA 78 (106)
T ss_dssp TTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHH
Confidence 4468899999999999999999999999999999988755 479999999554444
No 61
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=4.4e-16 Score=88.67 Aligned_cols=54 Identities=7% Similarity=-0.015 Sum_probs=46.5
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+....++|||+|||+.+++++|+++|++||.|..+++..+ |||||+|.+.++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a 63 (108)
T 1x4c_A 10 PSRRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDM 63 (108)
T ss_dssp CCCSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHH
Confidence 34455789999999999999999999999999999999876 8999999554444
No 62
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.66 E-value=5.6e-16 Score=91.05 Aligned_cols=58 Identities=19% Similarity=0.176 Sum_probs=48.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.++.+.++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 118 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 118 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHH
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHH
Confidence 3345578999999999999999999999999999999987743 589999999444433
No 63
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.7e-16 Score=91.27 Aligned_cols=57 Identities=9% Similarity=-0.027 Sum_probs=48.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCE-EEEEEccCCC--CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAI-RQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i-~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
.+...++|||+|||+.+++++|+++|++||.| ..|+++.+.. ++|||||+|.+.++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a 70 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDA 70 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHH
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHH
Confidence 44556899999999999999999999999999 7888887764 589999999544443
No 64
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.66 E-value=4.8e-17 Score=91.74 Aligned_cols=55 Identities=9% Similarity=0.085 Sum_probs=47.6
Q ss_pred CCCcEEEEecCCC------CCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPY------KITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~------~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..+++|||+|||+ .+++++|+++|++||.|.+++++.++. ++|||||+|.+.++|
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A 67 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDA 67 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHH
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 4468999999999 999999999999999999999988765 589999999544444
No 65
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.66 E-value=2.5e-16 Score=89.18 Aligned_cols=58 Identities=10% Similarity=0.220 Sum_probs=48.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
.+..++++|||+|||+.+++++|+++|++||.|..+.+..+.. ++|||||+|.+.++|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a 83 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADA 83 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHH
Confidence 3445678999999999999999999999999999999987764 479999999544444
No 66
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.9e-16 Score=90.47 Aligned_cols=56 Identities=14% Similarity=0.289 Sum_probs=48.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC-CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~-~~G~afv~f~~~~~~ 69 (80)
....++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A 82 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 82 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHH
Confidence 34568999999999999999999999999999999987754 689999999555544
No 67
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=86.07 Aligned_cols=54 Identities=19% Similarity=0.177 Sum_probs=46.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC----CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD----TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~----~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+.+++++|+++|++||.|..+++..+.. ++|||||+|.+.++|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a 60 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEA 60 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHH
Confidence 358999999999999999999999999999999987764 589999999544444
No 68
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.66 E-value=3e-16 Score=89.07 Aligned_cols=58 Identities=16% Similarity=0.122 Sum_probs=47.3
Q ss_pred CCCCCcEEEEecCCCCC------CHHHHHHHhhcCCCEEEEEEccC-CCCCcEEEEEeccccccc
Q psy10279 13 PPEVNRVLYIRNLPYKI------TGDEMYDIFGKYGAIRQIRIGNT-PDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~------~~~~l~~~F~~~G~i~~~~l~~~-~~~~G~afv~f~~~~~~~ 70 (80)
....+++|||+|||+.+ ++++|+++|++||.|.++++... +.++|||||+|.+.++|.
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~ 75 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAV 75 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHH
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHH
Confidence 34456899999999999 78999999999999999998742 236899999996555543
No 69
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=1.5e-16 Score=88.42 Aligned_cols=55 Identities=24% Similarity=0.300 Sum_probs=46.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEE-EEccCCC---CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQI-RIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~-~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.++++|||+|||+.+++++|+++|++||.|..+ ++..++. ++|||||+|.+.++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A 61 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDAS 61 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHH
Confidence 356899999999999999999999999999999 9887743 589999999444443
No 70
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=90.16 Aligned_cols=58 Identities=19% Similarity=0.229 Sum_probs=48.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.++...++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 81 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECA 81 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHH
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 3345568999999999999999999999999999999987654 479999999544444
No 71
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=2.6e-16 Score=88.72 Aligned_cols=57 Identities=12% Similarity=0.152 Sum_probs=48.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhc-CCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGK-YGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~-~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
++.+.++|||+|||+.+++++|+++|++ ||.|..+++..+.. ++|||||+|.+.++|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a 64 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQ 64 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHH
Confidence 4456689999999999999999999999 99999999988753 479999999554444
No 72
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.66 E-value=3.6e-16 Score=88.99 Aligned_cols=56 Identities=14% Similarity=0.214 Sum_probs=47.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..++++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 81 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQA 81 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHH
Confidence 34568999999999999999999999999999999987754 489999999544443
No 73
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.1e-16 Score=86.11 Aligned_cols=54 Identities=13% Similarity=0.095 Sum_probs=46.1
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+.+.++|||+|||+.+++++|+++|++||.|.++++..+ +|||||+|.+.++|
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A 66 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAA 66 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHH
Confidence 3445689999999999999999999999999999998754 79999999544444
No 74
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.1e-16 Score=88.74 Aligned_cols=57 Identities=16% Similarity=0.296 Sum_probs=48.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
+..+.++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a 69 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEA 69 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHH
Confidence 345568999999999999999999999999999999987765 479999999554444
No 75
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.2e-15 Score=87.28 Aligned_cols=53 Identities=17% Similarity=0.310 Sum_probs=46.4
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.++|||+|||+.+++++|+++|++||.|..|++..++. ++|||||+|.+.++|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a 80 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSV 80 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHH
Confidence 37999999999999999999999999999999987764 589999999554444
No 76
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=90.19 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=47.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
+...++|||+|||+++++++|.++|++||.|..|.+..+.. ++|||||+|.+.++|
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A 61 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADA 61 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHH
Confidence 34568999999999999999999999999999999988653 579999999544444
No 77
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.65 E-value=4.8e-16 Score=85.25 Aligned_cols=53 Identities=17% Similarity=0.212 Sum_probs=46.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.+++
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 61 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESV 61 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHH
Confidence 47999999999999999999999999999999987653 589999999554443
No 78
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=2.5e-16 Score=89.29 Aligned_cols=57 Identities=18% Similarity=0.346 Sum_probs=47.3
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
..+...++|||+|||+++++++|+++|++||.+ +|+++.++. ++|||||+|.+.++|
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a 68 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDA 68 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHH
Confidence 345566899999999999999999999999955 898887764 479999999555544
No 79
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.64 E-value=3.6e-16 Score=84.75 Aligned_cols=52 Identities=8% Similarity=0.007 Sum_probs=45.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.+|||+|||+.+++++|+++|++||.|.++++..++. ++|||||+|.+.++|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a 56 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 56 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHH
Confidence 6899999999999999999999999999999987744 479999999544444
No 80
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=3.8e-16 Score=89.43 Aligned_cols=55 Identities=16% Similarity=0.346 Sum_probs=46.8
Q ss_pred CCCcEEEEecCCCCCCHHHHH---HHhhcCCCEEEEEEccCCC------CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMY---DIFGKYGAIRQIRIGNTPD------TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~---~~F~~~G~i~~~~l~~~~~------~~G~afv~f~~~~~~ 69 (80)
...++|||+|||+.+++++|. ++|++||.|.++++..+.. ++|||||+|.+.++|
T Consensus 13 ~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A 76 (111)
T 2cpi_A 13 VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 76 (111)
T ss_dssp CCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHH
Confidence 445899999999999999999 9999999999999987753 459999999554444
No 81
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-16 Score=88.57 Aligned_cols=55 Identities=22% Similarity=0.255 Sum_probs=46.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC------CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD------TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~------~~G~afv~f~~~~~~ 69 (80)
.+.++|||+|||+.+++++|+++|++||.|..+++..+.. ++|||||+|.+.++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a 63 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQA 63 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHH
Confidence 4568999999999999999999999999999999987543 468999999544444
No 82
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.64 E-value=1.7e-16 Score=93.14 Aligned_cols=53 Identities=17% Similarity=0.247 Sum_probs=46.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEE--EEEccCCC---CCcEEEEEeccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQ--IRIGNTPD---TRYLTKSLVMKC 66 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--~~l~~~~~---~~G~afv~f~~~ 66 (80)
....++|||+|||+++++++|+++|++||.|.. |+++.|+. ++|||||+|.+.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~ 77 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI 77 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH
Confidence 445689999999999999999999999999976 99988874 589999999554
No 83
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=7.8e-16 Score=83.83 Aligned_cols=53 Identities=19% Similarity=0.224 Sum_probs=45.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+.+.++|||+|||+.+++++|+++|++||.|..+++..+ +|||||+|.+.++|
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A 61 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAA 61 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHH
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHH
Confidence 345689999999999999999999999999999998863 79999999554444
No 84
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=8.2e-16 Score=84.80 Aligned_cols=52 Identities=21% Similarity=0.243 Sum_probs=45.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
++.+.++|||+|||+.+++++|+++|++||.|..+++. +|||||+|.+.++|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A 55 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAA 55 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHH
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHH
Confidence 34567999999999999999999999999999999987 79999999544444
No 85
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.64 E-value=3.9e-16 Score=87.05 Aligned_cols=53 Identities=15% Similarity=0.142 Sum_probs=46.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhcc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
.+..|||+||++.+++++|+++|.+||+|.++++.. ++|||||+| .+.++|++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey-------~~~~eA~~ 58 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKY-------TTREEANK 58 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEE-------SSHHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEE-------CCHHHHHH
Confidence 357899999999999999999999999999999864 689999999 66655554
No 86
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.6e-16 Score=87.67 Aligned_cols=56 Identities=20% Similarity=0.284 Sum_probs=47.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
....++|||+|||+.+++++|+++|++||.|..+++..+.. ++|||||+|.+.+.|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a 79 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKC 79 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHH
Confidence 34568999999999999999999999999999999988753 479999999544444
No 87
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=7.7e-16 Score=86.22 Aligned_cols=54 Identities=24% Similarity=0.299 Sum_probs=46.5
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
..+.++|||+|||+.+++++|+++|++||.|..+++..+ +|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~ 65 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAE 65 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHH
Confidence 345689999999999999999999999999999998754 799999996555543
No 88
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.64 E-value=1.4e-16 Score=85.26 Aligned_cols=52 Identities=17% Similarity=0.339 Sum_probs=45.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
++|||+|||+++++++|+++|++||.|..+++..++. ++|||||+|.+.+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a 55 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGV 55 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHH
Confidence 4799999999999999999999999999999987754 589999999554444
No 89
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=1.8e-16 Score=89.21 Aligned_cols=55 Identities=9% Similarity=0.275 Sum_probs=47.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
...++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a 63 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDV 63 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHH
Confidence 3458999999999999999999999999999999988763 479999999655554
No 90
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.64 E-value=8.3e-16 Score=89.29 Aligned_cols=56 Identities=16% Similarity=0.225 Sum_probs=47.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
...+++|||+|||+.+++++|.++|++||.|..|.++.+.. ++|||||+|.+.++|
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 77 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEA 77 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHH
Confidence 34468999999999999999999999999999999987754 489999999554444
No 91
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.64 E-value=2.9e-16 Score=90.96 Aligned_cols=58 Identities=9% Similarity=0.028 Sum_probs=47.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCC---EEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGA---IRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~---i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
.++...++|||+|||+++++++|+++|++||. |..|+++.+.. ++|||||+|.+.+++
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a 74 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDV 74 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHH
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHH
Confidence 33455689999999999999999999999999 88898887655 579999999443333
No 92
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.63 E-value=2.7e-16 Score=84.00 Aligned_cols=50 Identities=12% Similarity=0.160 Sum_probs=43.7
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMI 68 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~ 68 (80)
+|||+|||+.+++++|+++|++||.|.++++..++. ++|||||+|.+.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~ 53 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDI 53 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHH
Confidence 489999999999999999999999999999987753 58999999944433
No 93
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=3.3e-16 Score=90.06 Aligned_cols=54 Identities=17% Similarity=0.268 Sum_probs=45.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCC------CCCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP------DTRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~------~~~G~afv~f~~~~~~ 69 (80)
...++|||+|||+.+++++|+++|++||.|. +.++.+. .++|||||+|.+.++|
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a 65 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSV 65 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHH
Confidence 4468999999999999999999999999999 7777664 3589999999554444
No 94
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.63 E-value=1.4e-15 Score=88.30 Aligned_cols=56 Identities=11% Similarity=0.259 Sum_probs=47.7
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
...+++|||+|||+.+++++|+++|++||.|..+++..+.. ++|||||+|.+.++|
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A 89 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADA 89 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHH
Confidence 34568999999999999999999999999999999987653 589999999544443
No 95
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.1e-16 Score=90.80 Aligned_cols=53 Identities=15% Similarity=0.287 Sum_probs=46.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.++|||+|||+.+++++|+++|++||.|..|+++.++. ++|||||+|.+.++|
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a 82 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 82 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHH
Confidence 48999999999999999999999999999999988754 589999999444333
No 96
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.63 E-value=1.6e-16 Score=88.49 Aligned_cols=56 Identities=27% Similarity=0.374 Sum_probs=47.0
Q ss_pred CCCCcEEEEecCCCCCCHHHHH----HHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMY----DIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~----~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..++++|||+|||+.+++++|+ ++|++||.|..+.+..++.++|||||+|.+.++|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A 64 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSA 64 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHH
Confidence 3456899999999999999999 9999999999999876555689999999544443
No 97
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=1e-15 Score=90.12 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=45.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEE--EEEEccCCC--CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIR--QIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~--~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
+....+|||+|||+++++++|+++|++| .|. +|+|+.++. ++|||||+|.+.+++
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A 97 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELA 97 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHH
Confidence 3456899999999999999999999999 566 899887755 689999999554444
No 98
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.63 E-value=3e-16 Score=90.57 Aligned_cols=56 Identities=13% Similarity=0.065 Sum_probs=46.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCC-CEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYG-AIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G-~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
++....+|||+|||+++++++|+++|++|| .|..+.+..+ .++|||||+|.+.++|
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-~~rGfaFV~F~~~e~A 80 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-DFDGTGALEFPSEEIL 80 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-SSSCCEEEEESSHHHH
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-CCCCEEEEEECCHHHH
Confidence 445568999999999999999999999999 8999987543 4789999999544444
No 99
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.63 E-value=8.9e-16 Score=90.46 Aligned_cols=55 Identities=18% Similarity=0.286 Sum_probs=47.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
...++|||+|||+.+++++|+++|++||.|.+|++..++. ++|||||+|.+.++|
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 97 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSA 97 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHH
Confidence 4468999999999999999999999999999999987754 479999999544444
No 100
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=88.45 Aligned_cols=58 Identities=21% Similarity=0.385 Sum_probs=44.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCC----CCCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP----DTRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~----~~~G~afv~f~~~~~~ 69 (80)
..+....++|||+|||+++++++|+++|++|| |.++++..+. .++|||||+|.+.+++
T Consensus 13 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a 74 (100)
T 2j76_E 13 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSL 74 (100)
T ss_dssp -------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHH
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHH
Confidence 34445679999999999999999999999999 9999998775 2589999999544443
No 101
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.63 E-value=9.7e-16 Score=86.01 Aligned_cols=53 Identities=17% Similarity=0.141 Sum_probs=45.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+..+++|||+|||+.+++++|+++|++||.|.++++. .++|||||+|.+.++|
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A 76 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQA 76 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHH
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHH
Confidence 3446899999999999999999999999999999887 3579999999544443
No 102
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=5.4e-16 Score=93.90 Aligned_cols=54 Identities=7% Similarity=0.239 Sum_probs=45.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC--CEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYG--AIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G--~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+++++++|+++|++|| .|.+++++.|+. ++|||||+|.+.++|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A 112 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSV 112 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHH
Confidence 347999999999999999999999999 999999988754 479999999544444
No 103
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.62 E-value=4.2e-16 Score=88.73 Aligned_cols=58 Identities=12% Similarity=0.027 Sum_probs=48.2
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCC---EEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGA---IRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~---i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
.+....++|||+|||+++++++|+++|+.||. |..|+++.+.. ++|||||+|.+.+++
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a 68 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDV 68 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHH
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHH
Confidence 34456789999999999999999999999998 88999887754 689999999444433
No 104
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.62 E-value=9.1e-16 Score=91.59 Aligned_cols=55 Identities=16% Similarity=0.183 Sum_probs=47.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.....++|||+|||+.+++++|+++|++||.|.++++..+ ++|||||+|.+.+++
T Consensus 69 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a 123 (150)
T 2i2y_A 69 SCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDA 123 (150)
T ss_dssp SSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS--SCSEEEEEESSHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHH
Confidence 3445689999999999999999999999999999999876 589999999544443
No 105
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.4e-15 Score=86.88 Aligned_cols=56 Identities=18% Similarity=0.208 Sum_probs=47.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEE--------EEEEccCCC---CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIR--------QIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~--------~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
....++|||+|||+.+++++|+++|++||.|. .+++..++. ++|||||+|.+.++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A 78 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTA 78 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHH
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHH
Confidence 34568999999999999999999999999998 688887743 589999999554444
No 106
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.1e-15 Score=86.75 Aligned_cols=55 Identities=15% Similarity=0.123 Sum_probs=46.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCC-EEEEEEc-cCCC---CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGA-IRQIRIG-NTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~-i~~~~l~-~~~~---~~G~afv~f~~~~~~ 69 (80)
.+.++|||+|||+.+++++|+++|++||. |..+.+. .+.. ++|||||+|.+.+.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A 65 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAA 65 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHH
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHH
Confidence 34689999999999999999999999998 9999987 5543 589999999554444
No 107
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.62 E-value=1.7e-16 Score=87.72 Aligned_cols=53 Identities=19% Similarity=0.174 Sum_probs=44.0
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCC--CEEEEEEccCCC---CCcEEEEEeccccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYG--AIRQIRIGNTPD---TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G--~i~~~~l~~~~~---~~G~afv~f~~~~~~~ 70 (80)
.+|||+|||+++++++|+++|++|| .|.++++..++. ++|||||+|.+.++|-
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~ 59 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSK 59 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHH
Confidence 4799999999999999999999999 999999988754 4799999995555443
No 108
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.62 E-value=6.7e-16 Score=94.39 Aligned_cols=57 Identities=19% Similarity=0.334 Sum_probs=48.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.+...++|||+|||+++++++|.++|++||.|.+|++..++. ++|||||+|.+.++|
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A 68 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 68 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHH
Confidence 345578999999999999999999999999999999988754 479999999444443
No 109
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=6.9e-16 Score=88.75 Aligned_cols=49 Identities=6% Similarity=0.135 Sum_probs=43.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEeccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKC 66 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~ 66 (80)
..+|||+|||+++++++|+++|++| .|..|+|+.++. ++|||||+|.+.
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~ 66 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSP 66 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSH
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCH
Confidence 4799999999999999999999999 899999987754 589999999443
No 110
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=2e-16 Score=84.40 Aligned_cols=51 Identities=12% Similarity=0.229 Sum_probs=44.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
+|||+|||+.+++++|+++|++||.|.++++..++. ++|||||+|.+.+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 54 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPV 54 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHH
Confidence 589999999999999999999999999999887654 589999999555444
No 111
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.2e-15 Score=86.85 Aligned_cols=53 Identities=17% Similarity=0.172 Sum_probs=46.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+...++|||+|||+.+++++|+++|++||.|..|++..+ +|||||+|.+.++|
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a 74 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESA 74 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHH
Confidence 345689999999999999999999999999999999876 79999999554444
No 112
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.61 E-value=4e-16 Score=92.86 Aligned_cols=54 Identities=9% Similarity=0.036 Sum_probs=46.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCC---EEEEEEccCCC--CCcEEEEEecccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGA---IRQIRIGNTPD--TRYLTKSLVMKCM 67 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~---i~~~~l~~~~~--~~G~afv~f~~~~ 67 (80)
+...++|||+|||+++++++|+++|++||. |..|+++.++. ++|||||+|.+.+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e 99 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSED 99 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHH
Confidence 345689999999999999999999999999 78898887755 5799999994433
No 113
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.61 E-value=2e-15 Score=90.50 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=47.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
...++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.+++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a 125 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 125 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHH
Confidence 4468999999999999999999999999999999988743 689999999554444
No 114
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-16 Score=92.01 Aligned_cols=59 Identities=15% Similarity=0.191 Sum_probs=45.7
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEcc-C--CCCCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN-T--PDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~-~--~~~~G~afv~f~~~~~~ 69 (80)
+.+....++|||+|||+.+++++|.++|++||.|..+.++. + +.++|||||+|.+.++|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a 80 (124)
T 1wel_A 19 RSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADY 80 (124)
T ss_dssp SSCCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHH
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHH
Confidence 34555678999999999999999999999999997633332 2 23579999999554444
No 115
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.61 E-value=2.3e-15 Score=84.44 Aligned_cols=53 Identities=25% Similarity=0.397 Sum_probs=44.6
Q ss_pred CCCCCCcEEEEecCCC-CCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPY-KITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~-~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+..++++|||+|||+ .+++++|+++|++||.|..+++. +|||||+|.+.++|
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A 70 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSV 70 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHH
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHH
Confidence 3445679999999999 99999999999999999999884 89999999544444
No 116
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=1.2e-15 Score=85.18 Aligned_cols=55 Identities=13% Similarity=0.158 Sum_probs=44.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+....++|||+|||+.+++++|+++|++||.|. +.+..+ .++|||||+|.+.++|
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-~~~g~afV~f~~~~~a 69 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-GPRRRAFLHYPDSAAA 69 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-TTTTEEEEECSSHHHH
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-CCCcEEEEEECCHHHH
Confidence 344578999999999999999999999999996 555543 5789999999544443
No 117
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.61 E-value=1.6e-15 Score=91.03 Aligned_cols=55 Identities=22% Similarity=0.307 Sum_probs=47.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.+.++|||+|||+.+++++|.++|++||.|..|.++.+.. ++|||||+|.+.++|
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 94 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADA 94 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHH
Confidence 4568999999999999999999999999999999988765 479999999554444
No 118
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=8.8e-16 Score=89.16 Aligned_cols=56 Identities=7% Similarity=0.080 Sum_probs=46.4
Q ss_pred CCCCCCCcEEEE--ecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYI--RNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V--~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+..+.++++||| ||||+.+++++|+++|++||.|.++.+.. .+|||||+|.+.++|
T Consensus 19 ~~~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A 76 (114)
T 2cq2_A 19 ETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEES 76 (114)
T ss_dssp CCCSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHH
T ss_pred cCCCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHH
Confidence 445566789999 77999999999999999999999998764 379999999444333
No 119
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.61 E-value=2.6e-15 Score=83.05 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=44.8
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+...++|||+|||+.+++++|+++|++||.|..+++. ++||||+|.+.++|
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a 57 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-----KDYAFVHMERAEDA 57 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-----SSEEEEEESCHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-----CCEEEEEECCHHHH
Confidence 34566999999999999999999999999999999987 56999999544444
No 120
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.60 E-value=1.5e-15 Score=90.75 Aligned_cols=54 Identities=24% Similarity=0.397 Sum_probs=47.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
++++|||+|||+++++++|+++|++||.|.++++..++. ++|||||+|.+.++|
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a 58 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSV 58 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHH
Confidence 458999999999999999999999999999999988743 689999999555544
No 121
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=8.1e-16 Score=86.34 Aligned_cols=50 Identities=18% Similarity=0.161 Sum_probs=44.5
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
++|||+|||+.+++++|+++|++||.|..+++..+ ++|||||+|.+.++|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a 50 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDA 50 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHH
Confidence 47999999999999999999999999999999877 789999999554444
No 122
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.60 E-value=2.2e-15 Score=85.87 Aligned_cols=53 Identities=19% Similarity=0.256 Sum_probs=45.5
Q ss_pred CCCCCCcEEEEecCCCC-CCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYK-ITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~-~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+...+++|||+|||+. +++++|+++|++||.|..|.+ ++|||||+|.+.+.|
T Consensus 22 ~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A 75 (110)
T 1wf1_A 22 DPKSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHA 75 (110)
T ss_dssp CCTTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHH
T ss_pred CCCCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHH
Confidence 34445689999999999 999999999999999999988 489999999555544
No 123
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.60 E-value=3.4e-16 Score=93.51 Aligned_cols=56 Identities=20% Similarity=0.306 Sum_probs=45.4
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
++...++|||+|||+++++++|+++|++|| |.+|+|+.++. ++|||||+|.+.+++
T Consensus 42 ~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A 99 (139)
T 2hgn_A 42 QSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEA 99 (139)
T ss_dssp ---CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHH
Confidence 344568999999999999999999999999 66999987754 589999999544443
No 124
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.60 E-value=2e-15 Score=86.24 Aligned_cols=51 Identities=20% Similarity=0.398 Sum_probs=44.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+...++|||+|||+.+++++|+++|++||.|..+.+. +|||||+|.+.++|
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A 78 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESA 78 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHH
Confidence 4456899999999999999999999999999999987 79999999544443
No 125
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=6.4e-16 Score=86.26 Aligned_cols=57 Identities=14% Similarity=0.106 Sum_probs=45.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.....++|||+|||+.+++++|+++|++||.|..+.++.++. ++|||||+|.+.+.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a 70 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEA 70 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHH
Confidence 344568999999999999999999999999998766555433 479999999544443
No 126
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=2.4e-15 Score=82.95 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=46.7
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEeccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMI 68 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~ 68 (80)
.++...++|||+|||+.+++++|+++|++| .|..++++.+.. ++|||||+|.+.++
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~ 62 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEE 62 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHH
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHH
Confidence 344566899999999999999999999999 999999988743 47999999944333
No 127
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=2.4e-15 Score=82.91 Aligned_cols=52 Identities=12% Similarity=0.132 Sum_probs=44.6
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
++...++|||+|||+.+++++|+++|++||.|..+++. +|||||+|.+.++|
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a 56 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-----KDYAFVHMEKEADA 56 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESCHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-----CCEEEEEECCHHHH
Confidence 34556899999999999999999999999999999987 56999999544443
No 128
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.1e-16 Score=91.93 Aligned_cols=55 Identities=24% Similarity=0.273 Sum_probs=45.1
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCE----EEEEEccCCC--CCcEEEEEeccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAI----RQIRIGNTPD--TRYLTKSLVMKCMI 68 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i----~~~~l~~~~~--~~G~afv~f~~~~~ 68 (80)
.....+|||+|||+++++++|+++|++||.| ..|+|+.+.. ++|||||+|.+.++
T Consensus 20 ~~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~ 80 (123)
T 2dha_A 20 KENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEY 80 (123)
T ss_dssp CCSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHH
Confidence 3456899999999999999999999999976 5788877643 57999999944333
No 129
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.59 E-value=1.6e-15 Score=87.90 Aligned_cols=53 Identities=19% Similarity=0.218 Sum_probs=45.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.++|||+|||+.+++++|+++|++||.|.++++..++. ++|||||+|.+.+++
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a 91 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSV 91 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHH
Confidence 47999999999999999999999999999999987643 589999999444433
No 130
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.59 E-value=2.7e-15 Score=83.75 Aligned_cols=50 Identities=26% Similarity=0.415 Sum_probs=43.4
Q ss_pred CCCcEEEEecCCC-CCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPY-KITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~-~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+.++|||+|||+ .+++++|+++|++||.|..+++. +|||||+|.+.++|
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A 58 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSV 58 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHH
Confidence 4568999999999 99999999999999999999885 79999999554444
No 131
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=86.47 Aligned_cols=51 Identities=14% Similarity=0.284 Sum_probs=44.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+.+++++|+++|++||.|..|.+.. ++|||||+|.+.++|
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A 59 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEA 59 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHH
Confidence 357999999999999999999999999999998864 579999999544443
No 132
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1e-14 Score=81.56 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=43.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcC--CCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKY--GAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~--G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..+.++|||+|||+.+++++|+++|++| |.|..+.+. +|||||+|.+.++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A 64 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDA 64 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHH
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHH
Confidence 3456899999999999999999999999 999999875 78999999544444
No 133
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.59 E-value=1.5e-15 Score=91.09 Aligned_cols=54 Identities=11% Similarity=0.224 Sum_probs=46.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC-----CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-----TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~-----~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+++++++|+++|++||.|.++++..+.. ++|||||+|.+.++|
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A 60 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAA 60 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHH
Confidence 358999999999999999999999999999999987653 469999999554444
No 134
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=2.1e-15 Score=86.28 Aligned_cols=57 Identities=26% Similarity=0.340 Sum_probs=45.9
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCE----EEEEEccCCCCCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAI----RQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i----~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+..++++|||+|||+.+++++|+++|++||.| ..+++. .+.++|||||+|.+.++|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a 80 (115)
T 2cpx_A 20 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIA 80 (115)
T ss_dssp CCCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHH
Confidence 344567999999999999999999999999998 555554 455789999999554444
No 135
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.59 E-value=1.4e-15 Score=87.67 Aligned_cols=52 Identities=8% Similarity=-0.006 Sum_probs=43.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
...++|||+|||+++++++|+++|++||.|..+.+..+ |||||+|.+.++|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~ 65 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMT 65 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHH
Confidence 34689999999999999999999999999999999866 99999995544443
No 136
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.59 E-value=3e-15 Score=90.77 Aligned_cols=55 Identities=15% Similarity=0.215 Sum_probs=46.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.++++|||+|||+.+++++|..+|++||.|..|.+..++. ++|||||+|.+.+.|
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A 127 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQA 127 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHH
Confidence 3457899999999999999999999999999999987754 479999999554444
No 137
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.59 E-value=3.4e-16 Score=86.85 Aligned_cols=54 Identities=17% Similarity=0.130 Sum_probs=44.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+.+++++|+++|++||.|..+.++.++. ++|||||+|.+.+.|
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a 70 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEA 70 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHH
Confidence 458999999999999999999999999998776665443 479999999544443
No 138
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=2.8e-15 Score=81.81 Aligned_cols=52 Identities=23% Similarity=0.384 Sum_probs=44.6
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcC----C-------CEEEEEEccCCCCCcEEEEEeccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKY----G-------AIRQIRIGNTPDTRYLTKSLVMKCMI 68 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~----G-------~i~~~~l~~~~~~~G~afv~f~~~~~ 68 (80)
+.+.++|||+|||+.+++++|+++|++| | .|.++++..+ +|||||+|.+.++
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~ 65 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDE 65 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHH
Confidence 3456899999999999999999999999 8 9999998754 7999999944333
No 139
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.4e-15 Score=85.54 Aligned_cols=54 Identities=19% Similarity=0.314 Sum_probs=46.4
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 63 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETA 63 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHH
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHH
Confidence 458999999999999999999999999999999987654 479999999544443
No 140
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.58 E-value=4.6e-15 Score=83.62 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=43.7
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+.++|||+|||+.+++++|+++|++||.|..+++. +|||||+|.+.++|
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a 58 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGA 58 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHH
Confidence 345899999999999999999999999999999987 67999999544444
No 141
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.58 E-value=1.1e-15 Score=90.46 Aligned_cols=54 Identities=20% Similarity=0.234 Sum_probs=46.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A 102 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDA 102 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHH
Confidence 457999999999999999999999999999999987653 589999999544443
No 142
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=3.5e-15 Score=83.69 Aligned_cols=54 Identities=15% Similarity=0.150 Sum_probs=43.0
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccC--CCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNT--PDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~--~~~~G~afv~f~~~~~~ 69 (80)
.+.+.++|||+|||+.+++++|+++|++||.| +++.+ +.++|||||+|.+.++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A 66 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDA 66 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHH
Confidence 34557999999999999999999999999988 34444 33689999999444443
No 143
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.57 E-value=8.7e-16 Score=84.52 Aligned_cols=50 Identities=16% Similarity=0.374 Sum_probs=45.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCM 67 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~ 67 (80)
++|||+|||+.+++++|+++|++||.|.++++..++. ++|||||+|.+.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~ 54 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES 54 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH
Confidence 5899999999999999999999999999999988754 5899999996655
No 144
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.57 E-value=3.2e-15 Score=95.24 Aligned_cols=56 Identities=18% Similarity=0.147 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC--CEEEEEEccCCC---CCcEEEEEecccccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYG--AIRQIRIGNTPD---TRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G--~i~~~~l~~~~~---~~G~afv~f~~~~~~~~ 71 (80)
..++|||+|||+.+++++|+++|++|| .|.+|+|+.++. ++|||||+|.+.++|..
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~ 127 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKK 127 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHH
Confidence 346899999999999999999999999 999999998764 47999999966555533
No 145
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.56 E-value=5.7e-15 Score=82.88 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=42.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..++.+.++|||+|||+.+++++|+++|+.|+.+.-+.-...+.++|||||+|.+.++|
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A 67 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDA 67 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHH
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHH
Confidence 34455679999999999999999999999886543332222233579999999544444
No 146
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.56 E-value=6.7e-15 Score=87.59 Aligned_cols=53 Identities=17% Similarity=0.173 Sum_probs=46.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.++|||+|||+.+++++|+++|++||.|.++++..++. ++|||||+|.+.++|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A 57 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 57 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHH
Confidence 58999999999999999999999999999999988763 469999999544444
No 147
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.56 E-value=6.2e-15 Score=88.06 Aligned_cols=54 Identities=24% Similarity=0.235 Sum_probs=46.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
++++|||+|||+++++++|+++|++||.|.++++..++. ++|||||+|.+.++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A 58 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDS 58 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHH
Confidence 458999999999999999999999999999999987654 579999999544444
No 148
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.56 E-value=2.6e-15 Score=88.97 Aligned_cols=58 Identities=21% Similarity=0.252 Sum_probs=47.0
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEE--------EEEccCCCCCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQ--------IRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+..++++|||+|||+.+++++|.++|++||.|.. +++..++.++|||||+|.+.++|
T Consensus 40 ~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A 105 (143)
T 3egn_A 40 EPGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAA 105 (143)
T ss_dssp CCCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHH
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHH
Confidence 34556799999999999999999999999998865 55555566789999999554444
No 149
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.55 E-value=5.2e-15 Score=87.98 Aligned_cols=52 Identities=27% Similarity=0.225 Sum_probs=45.4
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
++|||+|||+++++++|.++|++||.|.++++..++. ++|||||+|.+.++|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a 54 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDA 54 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHH
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHH
Confidence 5899999999999999999999999999999987764 579999999544444
No 150
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.55 E-value=6.7e-15 Score=90.10 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=44.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
-.+|||+|||+.+++++|+++|++||.|.+|++..+ .++|||||+|.+.++|.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~~~A~ 98 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQ 98 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCHHHHH
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCHHHHH
Confidence 356899999999999999999999999999998643 36799999995544443
No 151
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.55 E-value=1.1e-14 Score=89.69 Aligned_cols=55 Identities=11% Similarity=0.275 Sum_probs=47.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
..+++|||+|||+.+++++|+++|++||.|..|.+..+.. ++|||||+|.+.++|
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A 142 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADA 142 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHH
Confidence 4468999999999999999999999999999999988753 579999999554444
No 152
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.55 E-value=1.2e-14 Score=91.08 Aligned_cols=52 Identities=15% Similarity=0.280 Sum_probs=45.5
Q ss_pred CCcEEEEecCC-CCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLP-YKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp-~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
++++|||+||| +.+++++|+++|++||.|.+|+++.++ +|||||+|.+.++|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~--~g~afV~f~~~~~A 55 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK--PGAAMVEMADGYAV 55 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS--TTCEEEEESSHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC--CCEEEEEECCHHHH
Confidence 46899999999 899999999999999999999998664 89999999554444
No 153
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=2.9e-15 Score=83.27 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..+.++|||+|||+.+++++|+++|++||.|..+ ...+.++|||||+|.+.++|
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a 66 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADA 66 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHH
Confidence 3456899999999999999999999999998776 33444689999999444443
No 154
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.54 E-value=1.1e-14 Score=90.70 Aligned_cols=53 Identities=19% Similarity=0.223 Sum_probs=46.1
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
.++|||+|||+++++++|.++|++||.|..|+++.+.. ++|||||+|++.++|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A 163 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESA 163 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHH
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHH
Confidence 47999999999999999999999999999999987654 579999999554443
No 155
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.53 E-value=1.3e-15 Score=85.48 Aligned_cols=53 Identities=13% Similarity=-0.076 Sum_probs=43.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccC---CCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNT---PDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~---~~~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+.+++++|+++|++||.|.. .++.+ +.++|||||+|.+.+++
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a 71 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDL 71 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHH
Confidence 5689999999999999999999999998877 44443 33689999999544443
No 156
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.53 E-value=1.4e-14 Score=91.41 Aligned_cols=56 Identities=21% Similarity=0.311 Sum_probs=48.3
Q ss_pred CCCCCCcEEEEecCCC-CCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPY-KITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~-~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+..++++|||+|||+ .+++++|+++|++||.|.+|++..++ +|||||+|.+.++|
T Consensus 29 ~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A 85 (229)
T 2adc_A 29 LAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQA 85 (229)
T ss_dssp GGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHH
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHH
Confidence 3345679999999999 99999999999999999999998776 89999999554444
No 157
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.53 E-value=2.7e-14 Score=91.88 Aligned_cols=56 Identities=27% Similarity=0.359 Sum_probs=48.5
Q ss_pred CCCcEEEEecCCCCCCHHHHH----HHhhcCCCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMY----DIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~----~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
.++++|||+|||+.+++++|+ ++|++||.|.+|++..++.++|||||+|.+.++|.
T Consensus 7 ~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~ 66 (282)
T 3pgw_A 7 RPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSAT 66 (282)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHH
Confidence 456999999999999999966 89999999999999887778999999995554443
No 158
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=5e-14 Score=78.18 Aligned_cols=51 Identities=10% Similarity=0.196 Sum_probs=40.9
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMI 68 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~ 68 (80)
..++|||+|||+.+++++|+++|++||.|.+| ..++.+..||||+|.+.++
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~ 57 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGA 57 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHH
Confidence 45799999999999999999999999999987 3343322299999944333
No 159
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.7e-15 Score=82.07 Aligned_cols=52 Identities=17% Similarity=0.089 Sum_probs=42.4
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCC-EEEEEEccCCCCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGA-IRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~-i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+...++|||+|||+.+++++|+++|++||. |..+.+. ++|||||+|.+.++|
T Consensus 5 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A 57 (93)
T 2cqh_A 5 SSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWA 57 (93)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHH
Confidence 455689999999999999999999999999 6555553 479999999554444
No 160
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.52 E-value=7.1e-14 Score=77.93 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=43.8
Q ss_pred CCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 12 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..+.+.++|||+|| .+++++|+++|++||.|..|.+. .++|||||+|.+.++|
T Consensus 10 ~~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a 62 (97)
T 1x5p_A 10 RAPRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESA 62 (97)
T ss_dssp CCCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHH
T ss_pred CCCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHH
Confidence 34456689999996 89999999999999999999884 4689999999544444
No 161
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.52 E-value=3.5e-14 Score=87.82 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=45.9
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.++|||+|||+++++++|+++|++||.|.++++..+.. ++|||||+|.+.++|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A 83 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAA 83 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHH
Confidence 47999999999999999999999999999999987653 589999999554444
No 162
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.52 E-value=3e-14 Score=97.92 Aligned_cols=58 Identities=16% Similarity=0.206 Sum_probs=49.1
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccccC
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLVN 72 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~~ 72 (80)
.+.++|||+|||+.+++++|..+|++||.|..|.|+.+.. ++|||||+|.+.++|..+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~A 160 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSA 160 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHH
Confidence 4458999999999999999999999999999999987643 589999999665555333
No 163
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.51 E-value=3.5e-14 Score=86.70 Aligned_cols=54 Identities=15% Similarity=0.200 Sum_probs=46.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+.+++++|+++|++||.|..+++..+.. ++|||||+|.+.++|
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A 159 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSV 159 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHH
Confidence 458999999999999999999999999999999988753 479999999544443
No 164
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.51 E-value=2.4e-14 Score=85.83 Aligned_cols=56 Identities=23% Similarity=0.312 Sum_probs=47.9
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEeccccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~~ 70 (80)
...++|||+|||+.+++++|+++|++||.|.++++..+.. ++|||||+|.+.++|.
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~ 150 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQ 150 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHH
T ss_pred CCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHH
Confidence 3568999999999999999999999999999999987755 4799999995554443
No 165
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.51 E-value=8.1e-14 Score=81.85 Aligned_cols=52 Identities=21% Similarity=0.221 Sum_probs=42.5
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcE-EEEEeccccccccCh
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYL-TKSLVMKCMIFLVNM 73 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~-afv~f~~~~~~~~~~ 73 (80)
.|||+|||+.+++++|+.+|++||.|.+|++... .|| |||+|.+.++|..+.
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~ 79 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAK 79 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHH
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHH
Confidence 4689999999999999999999999999998643 386 999996555544333
No 166
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=3.6e-14 Score=78.78 Aligned_cols=54 Identities=17% Similarity=0.239 Sum_probs=44.2
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEE-EccCCCCCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIR-IGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~-l~~~~~~~G~afv~f~~~~~~ 69 (80)
...++|||+|||+.+++++|+++|++||.|..++ ++.++.+ |.|||+|.+.+.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~-~~afV~f~~~~~a 67 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSET-AVVNVTYSSKDQA 67 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSS-EEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCC-CEEEEEECCHHHH
Confidence 3468999999999999999999999999999994 7766543 4599999544433
No 167
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=6.5e-14 Score=83.19 Aligned_cols=57 Identities=7% Similarity=0.013 Sum_probs=48.2
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
...+.++|||+|||+.+++++|.++|++||.|..+.+..+.. ++|+|||+|.+.++|
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A 142 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDA 142 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHH
T ss_pred CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHH
Confidence 344568999999999999999999999999999999987643 479999999554444
No 168
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.50 E-value=3.9e-14 Score=83.87 Aligned_cols=50 Identities=20% Similarity=0.220 Sum_probs=42.3
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcE-EEEEecccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYL-TKSLVMKCMIF 69 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~-afv~f~~~~~~ 69 (80)
-.|||+||++.+++++|+++|++||.|.+|++..+ .+|+ |||+|.+.++|
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A 79 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSA 79 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHH
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHH
Confidence 46789999999999999999999999999988754 3687 99999554444
No 169
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.25 E-value=1.5e-15 Score=87.32 Aligned_cols=58 Identities=14% Similarity=0.144 Sum_probs=48.5
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEE--------EEEccCCC---CCcEEEEEeccccccccC
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQ--------IRIGNTPD---TRYLTKSLVMKCMIFLVN 72 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~--------~~l~~~~~---~~G~afv~f~~~~~~~~~ 72 (80)
.+.++|||+|||+.+++++|+++|++||.|.. +++..++. ++|||||+|.+.++|..+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 73 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAA 73 (116)
Confidence 34689999999999999999999999999998 88887643 589999999665555333
No 170
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.50 E-value=1.2e-14 Score=79.95 Aligned_cols=50 Identities=12% Similarity=0.202 Sum_probs=42.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+.+++++|+++|++| .|.++++. .++|||||+|.+.++|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a 53 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQA 53 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHH
Confidence 45889999999999999999999999 99999884 5689999999444433
No 171
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.50 E-value=5.7e-14 Score=84.21 Aligned_cols=58 Identities=10% Similarity=0.208 Sum_probs=48.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~ 71 (80)
+...++|||+|||+.+++++|+++|++||.|..+++..++. ++|+|||+|.+.++|..
T Consensus 91 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~ 151 (172)
T 2g4b_A 91 LPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 151 (172)
T ss_dssp CTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHH
T ss_pred CCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHH
Confidence 34468999999999999999999999999999999988753 47999999955555433
No 172
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.50 E-value=3.7e-14 Score=91.66 Aligned_cols=56 Identities=13% Similarity=0.233 Sum_probs=45.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC-CCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-TRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~-~~G~afv~f~~~~~~ 69 (80)
+...++|||+|||+.+++++|.++|++||.|.+|++..+.. ++|||||+|.+.++|
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A 94 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGA 94 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHH
Confidence 34568999999999999999999999999999999988765 489999999444433
No 173
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.50 E-value=3.1e-14 Score=89.01 Aligned_cols=53 Identities=17% Similarity=0.248 Sum_probs=46.5
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC-CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~-~~G~afv~f~~~~~~ 69 (80)
..+|||+|||+.+++++|+++|++||.|..++++.+.. ++|||||+|.+.++|
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a 156 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAA 156 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHH
Confidence 47899999999999999999999999999999988765 589999999554444
No 174
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.47 E-value=5e-14 Score=84.12 Aligned_cols=53 Identities=11% Similarity=0.184 Sum_probs=46.0
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
.++|||+|||+.+++++|+++|++||.|..+++..++. ++|||||+|.+.++|
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 142 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAV 142 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHH
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHH
Confidence 57899999999999999999999999999999987643 589999999444443
No 175
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.46 E-value=1.5e-13 Score=92.27 Aligned_cols=59 Identities=8% Similarity=0.117 Sum_probs=48.8
Q ss_pred CCCCCCCCCCcEEEEec--CCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 8 ANVRLPPEVNRVLYIRN--LPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 8 ~~~~~~~~~~~~l~V~n--Lp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.....++.++.+|||+| |++.+++++|+++|++||.|.+|.+.. +||||||+|.+.++|
T Consensus 9 ~~v~~~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A 69 (345)
T 3tht_A 9 EGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEES 69 (345)
T ss_dssp TTCCCCSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHH
T ss_pred CCceecCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHH
Confidence 34566778889999999 589999999999999999999987753 589999999444433
No 176
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.46 E-value=2e-13 Score=81.47 Aligned_cols=57 Identities=33% Similarity=0.338 Sum_probs=47.9
Q ss_pred CCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccc
Q psy10279 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~ 70 (80)
....++|||+|||..+++++|+++|++||.|..+++..+.. ++|+|||+|.+.++|.
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 145 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 34568999999999999999999999999999999987653 4699999995544443
No 177
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.46 E-value=6e-14 Score=86.19 Aligned_cols=53 Identities=21% Similarity=0.333 Sum_probs=46.5
Q ss_pred CcEEEEecCCC-CCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccccc
Q psy10279 17 NRVLYIRNLPY-KITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 17 ~~~l~V~nLp~-~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~ 71 (80)
+++|||+|||+ .+++++|+++|++||.|.+|++..++ +|||||+|.+.++|..
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~ 56 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQL 56 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHH
Confidence 58999999999 99999999999999999999998776 8999999955555433
No 178
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.46 E-value=2.4e-13 Score=83.02 Aligned_cols=57 Identities=11% Similarity=0.257 Sum_probs=48.8
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~~ 71 (80)
...++|||+|||+.+++++|+++|++||.|..+++..+.. ++|||||+|.+.++|..
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~ 171 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQ 171 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHH
Confidence 4568999999999999999999999999999999987753 47999999966555533
No 179
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.45 E-value=1.8e-13 Score=87.82 Aligned_cols=52 Identities=21% Similarity=0.332 Sum_probs=44.6
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
...++|||+|||+++++++|.++|++||.|..|.+.. ++|||||+|.+.++|
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A 71 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLA 71 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHH
Confidence 4458999999999999999999999999999999864 379999999544444
No 180
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.44 E-value=2.5e-13 Score=83.95 Aligned_cols=55 Identities=13% Similarity=0.254 Sum_probs=47.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~ 70 (80)
..++|||+|||+.+++++|+++|++||.|..+++..+.. ++|||||+|.+.++|.
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQ 181 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 457999999999999999999999999999999988754 4799999995554443
No 181
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.44 E-value=2.1e-13 Score=81.07 Aligned_cols=56 Identities=25% Similarity=0.247 Sum_probs=47.4
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEeccccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIFL 70 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~~ 70 (80)
...++|||+|||..+++++|+++|++||.|..+++..+.. ++|+|||+|.+.++|.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~ 144 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAE 144 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHH
Confidence 3458999999999999999999999999999999987653 4799999995544443
No 182
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.43 E-value=1.3e-13 Score=86.40 Aligned_cols=57 Identities=14% Similarity=0.110 Sum_probs=47.2
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCE--EEEEEccCCC-CCcEEEEEeccccccccC
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAI--RQIRIGNTPD-TRYLTKSLVMKCMIFLVN 72 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i--~~~~l~~~~~-~~G~afv~f~~~~~~~~~ 72 (80)
++++|||+|||+.+++++|+++|++||.| .++++..+.. .+|+|||+|.+.+.|..+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~A 181 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALET 181 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHH
Confidence 45789999999999999999999999999 8898887653 469999999555544333
No 183
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=1.3e-13 Score=81.68 Aligned_cols=48 Identities=17% Similarity=0.175 Sum_probs=44.7
Q ss_pred cEEEEecC----CCCCCHHHHHHHhhcCCCEEEEEEccCCCC---CcEEEEEecc
Q psy10279 18 RVLYIRNL----PYKITGDEMYDIFGKYGAIRQIRIGNTPDT---RYLTKSLVMK 65 (80)
Q Consensus 18 ~~l~V~nL----p~~~~~~~l~~~F~~~G~i~~~~l~~~~~~---~G~afv~f~~ 65 (80)
..|||+|| |+.+++.+|+++|++||+|.++.+..|+.+ +|||||+|.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECC
Confidence 67999999 999999999999999999999999999885 7999999964
No 184
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.43 E-value=2.3e-13 Score=79.17 Aligned_cols=52 Identities=17% Similarity=0.224 Sum_probs=43.5
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
++.++++|||+|| ++++++|+++|++||.|.+|.+. .++|||||+|.+.++|
T Consensus 35 ~~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A 86 (121)
T 2bz2_A 35 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESA 86 (121)
T ss_dssp CCCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHH
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHH
Confidence 3456789999996 69999999999999999999885 4689999999554444
No 185
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.41 E-value=6.1e-13 Score=85.56 Aligned_cols=53 Identities=13% Similarity=0.189 Sum_probs=46.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
++++|||+|||..+++++|+++|++||.|.++++..++ +|||||+|.+.++|.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~ 258 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAG 258 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHH
Confidence 45889999999999999999999999999999988655 699999995555443
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.40 E-value=2.5e-13 Score=87.42 Aligned_cols=52 Identities=15% Similarity=0.188 Sum_probs=45.1
Q ss_pred CCCcEEEEecCCCCC---------CHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKI---------TGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~---------~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..+++|||+|||..+ ++++|+++|++||.|.+|+++. ++|||||+|.+.++|
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~---~kG~AFV~F~~~~~A 192 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE---SKNCGFVKFKYQANA 192 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG---GGTEEEEEESSHHHH
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC---CCCEEEEEeCCHHHH
Confidence 456899999999998 7999999999999999999875 479999999655544
No 187
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.40 E-value=6.1e-13 Score=80.07 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=44.3
Q ss_pred CCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
...++|||+|||+.+++++|+++|++||.|..+ ..++.++|||||+|.+.++|
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A 149 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADA 149 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHH
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe--cCCCCCceEEEEEECCHHHH
Confidence 456899999999999999999999999999877 44455789999999554444
No 188
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.39 E-value=7.4e-13 Score=85.22 Aligned_cols=50 Identities=18% Similarity=0.258 Sum_probs=42.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
++++|||+|||+++++++|.++|++|| |..+.+ ..++|||||+|.+.++|
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A 70 (284)
T 3smz_A 21 NRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQA 70 (284)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHH
Confidence 458999999999999999999999999 999887 34689999999444444
No 189
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.39 E-value=5.7e-13 Score=85.48 Aligned_cols=54 Identities=9% Similarity=0.058 Sum_probs=46.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
++.+|||+|||+.+++++|+++|++||.|..+.+..+.. ++|||||+|.+.++|
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A 150 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPA 150 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHH
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHH
Confidence 458999999999999999999999999999999887754 479999999555444
No 190
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.38 E-value=8.9e-13 Score=85.13 Aligned_cols=56 Identities=18% Similarity=0.184 Sum_probs=47.6
Q ss_pred CCCCcEEEEecCCCC-CCHHHHHHHhhcCCCEEEEEEccCC----CCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPYK-ITGDEMYDIFGKYGAIRQIRIGNTP----DTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~~-~~~~~l~~~F~~~G~i~~~~l~~~~----~~~G~afv~f~~~~~~ 69 (80)
....++|||+|||+. +++++|+++|++||.|..+++..+. .++|||||+|.+.++|
T Consensus 207 ~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A 267 (292)
T 2ghp_A 207 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSA 267 (292)
T ss_dssp CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHH
T ss_pred CCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHH
Confidence 345689999999999 9999999999999999999998874 3589999999444433
No 191
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.5e-12 Score=73.32 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=38.6
Q ss_pred CcE-EEEecCCCCCCHHH----HHHHhhcC-CCEEEEEEccCCCCCcEEEEEecccccccc
Q psy10279 17 NRV-LYIRNLPYKITGDE----MYDIFGKY-GAIRQIRIGNTPDTRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 17 ~~~-l~V~nLp~~~~~~~----l~~~F~~~-G~i~~~~l~~~~~~~G~afv~f~~~~~~~~ 71 (80)
+.+ |||+|||+.+++++ |+++|++| |+|.+| +.|+|||+|.+.++|-.
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V-------tgG~AfV~F~~~esA~~ 61 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI-------TGCSAILRFINQDSAER 61 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC-------CTTCEEEEESSHHHHHH
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE-------ecCEEEEEECCHHHHHH
Confidence 455 99999999999887 66899999 599988 24999999955555533
No 192
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.37 E-value=2.4e-12 Score=73.61 Aligned_cols=56 Identities=14% Similarity=0.136 Sum_probs=43.7
Q ss_pred CCCCCcEEEEecCCCCCC-----------HHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKIT-----------GDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~-----------~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+.++++|+|.||..... +++|+++|++||.|.++.+ .++.++|||||+|.+.++|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A 77 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEA 77 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHH
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHH
Confidence 445679999999954432 5799999999999999966 5666899999999544443
No 193
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.36 E-value=2.1e-12 Score=79.23 Aligned_cols=52 Identities=12% Similarity=0.212 Sum_probs=45.0
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC-CEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYG-AIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G-~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
++++|||+|||..+++++|+++|++|| .|..+++..+. +|+|||+|.+.++|
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~--~g~afV~f~~~~~A 171 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD--RKMALIQMGSVEEA 171 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT--SSCEEEECSSHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC--CcEEEEEeCCHHHH
Confidence 468999999999999999999999999 99999986543 79999999544444
No 194
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.36 E-value=1.2e-12 Score=78.32 Aligned_cols=51 Identities=24% Similarity=0.397 Sum_probs=42.3
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcC----C-------CEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKY----G-------AIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~----G-------~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+.++|||+|||+++++++|+++|++| | .|.++++.. ++|||||+|.+.++|
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~---~~g~afV~f~~~~~A 64 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ---DKNFAFLEFRSVDET 64 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEET---TTTEEEEEESSHHHH
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecC---CCCEEEEEeCCHHHH
Confidence 35899999999999999999999999 7 788877653 479999999444443
No 195
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.35 E-value=1.8e-12 Score=83.43 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=46.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC---CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~---~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+.+++++|.++|++||.|..+++..+.. ++|||||+|.+.+++
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a 150 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSA 150 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHH
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHH
Confidence 458999999999999999999999999999999887654 479999999544444
No 196
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.33 E-value=3.4e-12 Score=80.45 Aligned_cols=52 Identities=12% Similarity=0.217 Sum_probs=44.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCC-CEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYG-AIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G-~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
++++|||+|||+.+++++|+++|++|| .|..+++..+ .+|+|||+|.+.++|
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~--~~g~afV~f~~~~~A 202 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--DRKMALIQMGSVEEA 202 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS--STTCEEEEESSHHHH
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC--CCcEEEEEECCHHHH
Confidence 468999999999999999999999999 9999998643 379999999554444
No 197
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.33 E-value=3.6e-12 Score=72.62 Aligned_cols=56 Identities=18% Similarity=0.086 Sum_probs=44.2
Q ss_pred CCCCcEEEEecCCC-----CCCHHHHHHHhhcCCCEEEEEEccCC----CCCcEEEEEecccccc
Q psy10279 14 PEVNRVLYIRNLPY-----KITGDEMYDIFGKYGAIRQIRIGNTP----DTRYLTKSLVMKCMIF 69 (80)
Q Consensus 14 ~~~~~~l~V~nLp~-----~~~~~~l~~~F~~~G~i~~~~l~~~~----~~~G~afv~f~~~~~~ 69 (80)
+.++++|+|.||.. +-.+++|++.|++||.|.++.++.++ .++|+|||+|.+.++|
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A 69 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESA 69 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHH
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHH
Confidence 45678999999963 23688999999999999999998764 3589999999444433
No 198
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.32 E-value=3.7e-13 Score=81.06 Aligned_cols=57 Identities=14% Similarity=0.005 Sum_probs=42.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEE--ccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRI--GNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l--~~~~~~~G~afv~f~~~~~~ 69 (80)
.+...++|||+|||+.+++++|+++|.+||.+..+.+ ...+.++|||||+|.+.++|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a 67 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDL 67 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHH
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHH
Confidence 4456799999999999999999999999987655211 12234689999999444443
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.31 E-value=3.1e-12 Score=78.06 Aligned_cols=51 Identities=24% Similarity=0.415 Sum_probs=41.6
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcC----C-------CEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKY----G-------AIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~----G-------~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..++|||+|||+++++++|.++|++| | .|.++.+. .++|||||+|.+.++|
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~---~~~g~afV~F~~~~~A 64 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDET 64 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEE---TTTTEEEEEESCSHHH
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEec---CCCCEEEEEeCCHHHH
Confidence 35899999999999999999999999 5 67777664 3479999999554444
No 200
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=8.7e-11 Score=66.46 Aligned_cols=51 Identities=10% Similarity=0.057 Sum_probs=40.3
Q ss_pred CcEEEEecCC-------CCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 17 NRVLYIRNLP-------YKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp-------~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
..+|.|...+ ..+++++|+++|++||.|.+|+++ +.++|||||+|.+.++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A 67 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAA 67 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHH
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHH
Confidence 4567776554 458999999999999999999987 45789999999544433
No 201
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1.5e-10 Score=67.73 Aligned_cols=52 Identities=13% Similarity=0.121 Sum_probs=45.3
Q ss_pred CCCCCCCcEEEEecCCCC-CCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecc
Q psy10279 11 RLPPEVNRVLYIRNLPYK-ITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMK 65 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~-~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~ 65 (80)
...-.+++.|||+||++. +++++|+++|++||.|..|.+..+.. .|||.|.+
T Consensus 12 ~~~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---tgfVrf~~ 64 (121)
T 1owx_A 12 SLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---EGIILFKE 64 (121)
T ss_dssp CCSCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---EEEEEESS
T ss_pred cccccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---EEEEEECC
Confidence 344556799999999999 99999999999999999999987653 59999966
No 202
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.12 E-value=1.2e-10 Score=66.18 Aligned_cols=55 Identities=20% Similarity=0.227 Sum_probs=42.4
Q ss_pred CCCcEEEEecC--CCCCC--------HHHHHHHhhcCCCEEEEEEccCCC-----CCcEEEEEecccccc
Q psy10279 15 EVNRVLYIRNL--PYKIT--------GDEMYDIFGKYGAIRQIRIGNTPD-----TRYLTKSLVMKCMIF 69 (80)
Q Consensus 15 ~~~~~l~V~nL--p~~~~--------~~~l~~~F~~~G~i~~~~l~~~~~-----~~G~afv~f~~~~~~ 69 (80)
.+++.|.+.|+ |.+.. +++|++.|++||.|.++.++.+.. ++|++||+|.+.++|
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A 72 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDC 72 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHH
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHH
Confidence 35688999998 43443 368999999999999999987753 579999999444433
No 203
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.01 E-value=4.8e-11 Score=67.71 Aligned_cols=48 Identities=13% Similarity=0.104 Sum_probs=36.5
Q ss_pred EecCCCCCCHHHHHHHh------------hcCCCEEEEEEccCCC--CCcEEEEEecccccc
Q psy10279 22 IRNLPYKITGDEMYDIF------------GKYGAIRQIRIGNTPD--TRYLTKSLVMKCMIF 69 (80)
Q Consensus 22 V~nLp~~~~~~~l~~~F------------~~~G~i~~~~l~~~~~--~~G~afv~f~~~~~~ 69 (80)
+.|||+.+++++|.+.| ++||.|.++++..+.. ++|||||+|.+.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHH
Confidence 56677777777777666 9999999999987654 589999999444433
No 204
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.93 E-value=3.7e-09 Score=60.96 Aligned_cols=56 Identities=13% Similarity=0.107 Sum_probs=41.9
Q ss_pred CCCCCcEEEEecCCCCCC----------HHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKIT----------GDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~----------~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
++.+++.|.+.|+-..-. +++|++.|++||.|.++.+..+. ++|++||+|.+.++|
T Consensus 3 ~p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A 68 (114)
T 3s6e_A 3 QPLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAA 68 (114)
T ss_dssp CCCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHH
T ss_pred CCCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHH
Confidence 456678999999843221 24789999999999999987654 589999999444333
No 205
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.91 E-value=2e-09 Score=62.45 Aligned_cols=54 Identities=19% Similarity=0.161 Sum_probs=41.6
Q ss_pred CCcEEEEecCCC--CC---CHHHHHHHhhcCCCEEEEEEccCCC-------CCcEEEEEecccccc
Q psy10279 16 VNRVLYIRNLPY--KI---TGDEMYDIFGKYGAIRQIRIGNTPD-------TRYLTKSLVMKCMIF 69 (80)
Q Consensus 16 ~~~~l~V~nLp~--~~---~~~~l~~~F~~~G~i~~~~l~~~~~-------~~G~afv~f~~~~~~ 69 (80)
++++|++.|+-. ++ -+++|++.|++||.|.++.++.+.. ++|++||+|.+.++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A 84 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASET 84 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHH
Confidence 568999999942 22 3688999999999999999987643 359999999444433
No 206
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.13 E-value=1e-05 Score=44.95 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=38.3
Q ss_pred CCcEEEEecCCC----CCCH----HHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccCh
Q psy10279 16 VNRVLYIRNLPY----KITG----DEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNM 73 (80)
Q Consensus 16 ~~~~l~V~nLp~----~~~~----~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~ 73 (80)
+..+|+|...|. ++-. .+|.+.|++||.|..+++..+. +||+|.+.++|..+.
T Consensus 6 pd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi 66 (91)
T 2dnr_A 6 SGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----MWVTFLEGSSALNVL 66 (91)
T ss_dssp SSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----EEEEESSHHHHHHGG
T ss_pred CCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----EEEEECChHHHHHHH
Confidence 346777776652 2323 5789999999999999998654 899997766664433
No 207
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.83 E-value=1.3e-05 Score=44.80 Aligned_cols=54 Identities=15% Similarity=0.198 Sum_probs=40.7
Q ss_pred CCCcEEEEecCCCC-----C-CH---HHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccCh
Q psy10279 15 EVNRVLYIRNLPYK-----I-TG---DEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNM 73 (80)
Q Consensus 15 ~~~~~l~V~nLp~~-----~-~~---~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~ 73 (80)
++..+|+|..++.. + .+ .+|.+.|.+||.|..+++..++ +||+|.+.++|..+.
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI 75 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVL 75 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHH
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHH
Confidence 34488888887643 2 21 4689999999999999998765 999997777775444
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=97.74 E-value=2.4e-05 Score=48.70 Aligned_cols=41 Identities=15% Similarity=0.050 Sum_probs=31.1
Q ss_pred CCHHHHHHHhhcCCCEEEEEEccCC-------CCCcEEEEEecccccc
Q psy10279 29 ITGDEMYDIFGKYGAIRQIRIGNTP-------DTRYLTKSLVMKCMIF 69 (80)
Q Consensus 29 ~~~~~l~~~F~~~G~i~~~~l~~~~-------~~~G~afv~f~~~~~~ 69 (80)
-.+++|.+.|++||.|.++.+..+. .++|++||+|.+.++|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a 188 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASET 188 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHH
Confidence 3457899999999999999887432 2469999999444443
No 209
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.71 E-value=0.00014 Score=40.81 Aligned_cols=51 Identities=20% Similarity=0.352 Sum_probs=38.3
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
.+...+.+++ +.|.++...||..+|+.||.| .|+++.|. -|||.|.+.+.+
T Consensus 12 ~p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidDT----sAlvvf~~~~~a 62 (100)
T 1whv_A 12 QPKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----SAFVSLSQPEQV 62 (100)
T ss_dssp CCCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEETT----EEEEECSCHHHH
T ss_pred CCCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcCC----eEEEEecCHHHH
Confidence 3445577777 999999999999999999954 55566553 799999444333
No 210
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.59 E-value=0.00018 Score=41.30 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=45.8
Q ss_pred CCCCCCCcEEEEecCCCCCCHHHHHHHhhcC-----CCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKY-----GAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~-----G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+.+.+..++|-+-|||-.++...++.+..++ |.|.++.+..|. |-|+|+|.+...|
T Consensus 15 ~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH---~GAivef~d~~~A 75 (117)
T 2l9w_A 15 RNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDF---NGAIIIFRDSKFA 75 (117)
T ss_dssp CCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTT---TEEEEECSCHHHH
T ss_pred cCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCC---CceEEEEccchhh
Confidence 3444567899999999999999999999999 999999888664 5699999444433
No 211
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.41 E-value=0.00023 Score=40.08 Aligned_cols=46 Identities=17% Similarity=0.280 Sum_probs=36.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
+.+++ +.|.++...+|..+|+.||. ..|+++.|. -|||.|.+.+.+
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fgg-v~I~WidDT----sAlvvf~~~~~a 52 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGN-IQISWIDDT----SAFVSLSQPEQV 52 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEE-EEEEEEETT----EEEEEEEEECHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCC-EEEEEEcCC----eEEEEecCHHHH
Confidence 55666 99999999999999999994 466666554 799999665554
No 212
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.0014 Score=37.02 Aligned_cols=50 Identities=10% Similarity=-0.000 Sum_probs=39.8
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhc-----CCCEEEEEEccCCCCCcEEEEEeccccccccChhhhc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGK-----YGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSD 77 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~-----~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~ 77 (80)
...+|.|.|||..++++.|.-.|++ -|.|..+.... +-|+|+| .+.+.|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF-------~d~~va~ 61 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTF-------REPADAE 61 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEE-------SSHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEE-------cChHHHH
Confidence 4589999999999999999999997 36788886642 6799999 5555554
No 213
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.18 E-value=0.0029 Score=34.94 Aligned_cols=52 Identities=10% Similarity=-0.010 Sum_probs=39.8
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCC-----CCcEEEEEecccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-----TRYLTKSLVMKCMIF 69 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~-----~~G~afv~f~~~~~~ 69 (80)
.+|-|++||+..+++++.+.++....+........+. ...-|||.|.+.+++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v 58 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDI 58 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHH
Confidence 4688999999999999999999998877665544332 236899999554443
No 214
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.99 E-value=0.00059 Score=47.46 Aligned_cols=50 Identities=14% Similarity=0.156 Sum_probs=36.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
+.|+|. .|..+++.+|.+.|++||+|.++..-.+. .-|+.|+|.+.+++.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~ 103 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIG 103 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCH
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHH
Confidence 799997 79999999999999999999998655332 469999997766653
No 215
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=95.80 E-value=0.031 Score=32.22 Aligned_cols=52 Identities=13% Similarity=0.108 Sum_probs=39.7
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccccccccChhhhcc
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
..+.|-|-+.|+.. ...+...|++||.|.+... .....+-.|.| .+..+|++
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~---~~~~NWihI~Y-------~s~~~A~r 74 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM---SNTGNWMHIRY-------QSKLQARK 74 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE---CSSSSEEEEEE-------SSHHHHHH
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc---CCCCCeEEEEe-------CCHHHHHH
Confidence 35789999998885 5667789999999998875 22356999999 66666554
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=95.46 E-value=0.018 Score=32.11 Aligned_cols=53 Identities=11% Similarity=-0.003 Sum_probs=35.2
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCC-----CcEEEEEecccccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDT-----RYLTKSLVMKCMIF 69 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~-----~G~afv~f~~~~~~ 69 (80)
+-+|-|++||+.+|++++.+.++.+-.+........+.+ -.-|||.|.+.+++
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv 66 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDI 66 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHH
Confidence 357889999999999999888877655433332222211 25789999554443
No 217
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=93.76 E-value=0.026 Score=32.85 Aligned_cols=22 Identities=5% Similarity=-0.096 Sum_probs=13.9
Q ss_pred EEEccCC-CCCcEEEEEeccccc
Q psy10279 47 IRIGNTP-DTRYLTKSLVMKCMI 68 (80)
Q Consensus 47 ~~l~~~~-~~~G~afv~f~~~~~ 68 (80)
+.+..++ .++|||||+|.+.+.
T Consensus 3 ~kl~ln~~~~~G~~fV~f~~~~~ 25 (158)
T 2kn4_A 3 YKLILNGKTLKGETTTEAVDAAT 25 (158)
T ss_dssp EEEEEECSSCEEEEEEECSSHHH
T ss_pred EEEEecCccccchhHHHHHHHHh
Confidence 3444444 368999999944333
No 218
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.63 E-value=0.22 Score=34.89 Aligned_cols=44 Identities=20% Similarity=0.366 Sum_probs=33.6
Q ss_pred CcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEeccc
Q psy10279 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKC 66 (80)
Q Consensus 17 ~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~ 66 (80)
...++++ .|..+...+|.++|+.||.+ +|++..+ ..|||.|.+.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd----t~a~V~~~~~ 483 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD----TSAFVSLSQP 483 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS----SEEEEECSCH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC----CeEEEEECCH
Confidence 4667776 88899999999999999965 5555533 4799999433
No 219
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=87.08 E-value=1.3 Score=24.86 Aligned_cols=52 Identities=6% Similarity=-0.039 Sum_probs=35.9
Q ss_pred CcEEEEecCCCCC-C----HHHHHHHhhcCCCEEEEEEccCCCCCcEEEEEecccccccc
Q psy10279 17 NRVLYIRNLPYKI-T----GDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIFLV 71 (80)
Q Consensus 17 ~~~l~V~nLp~~~-~----~~~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~~~~~~~~ 71 (80)
..+|+|.||+.++ . ...++++|..|+++........ -+ =..|.|.+.++|..
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS--FR-Rirv~F~~~~~A~~ 61 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS--FK-RVRINFSNPLSAAD 61 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT--TT-EEEEECSSTTHHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc--ce-EEEEEeCChHHHHH
Confidence 3679999998865 2 2568999999998877655522 12 45888865555543
No 220
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=86.47 E-value=0.24 Score=29.01 Aligned_cols=28 Identities=14% Similarity=0.398 Sum_probs=21.2
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEE
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQ 46 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~ 46 (80)
..|-|-+.|+..+.. +.+.|++||.|.+
T Consensus 8 ~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE 35 (132)
T 3p3d_A 8 LAILVFGYPETMANQ-VIAYFQEFGTILE 35 (132)
T ss_dssp CEEEEECCCGGGHHH-HHHHHGGGSCBCS
T ss_pred eEEEEEecCHHHHHH-HHHHHHhhceEee
Confidence 567777887776654 5578999999976
No 221
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=81.09 E-value=2.1 Score=28.65 Aligned_cols=45 Identities=20% Similarity=0.549 Sum_probs=26.3
Q ss_pred cCCCCCCCCCCCcEEEEecCCCCC----CHHHHHHHhhcCCCEEEEEEc
Q psy10279 6 RRANVRLPPEVNRVLYIRNLPYKI----TGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 6 ~~~~~~~~~~~~~~l~V~nLp~~~----~~~~l~~~F~~~G~i~~~~l~ 50 (80)
++...+.|+.+...-+|||++.-. ....+.++..+||.|..+++.
T Consensus 3 k~~~~~~PPgP~~lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~g 51 (494)
T 3swz_A 3 KKTGAKYPKSLLSLPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRMG 51 (494)
T ss_dssp ---------CCBCCCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEET
T ss_pred CCCCCCCCCCCCCCCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEeC
Confidence 344556777776666899987542 135677888899999887764
No 222
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=75.94 E-value=0.53 Score=27.80 Aligned_cols=27 Identities=4% Similarity=-0.118 Sum_probs=17.0
Q ss_pred HHHHHhhcCCCEEEEEEccCCCCCcEEEEEec
Q psy10279 33 EMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVM 64 (80)
Q Consensus 33 ~l~~~F~~~G~i~~~~l~~~~~~~G~afv~f~ 64 (80)
++.+++...|.|.... ..+||+||.-.
T Consensus 3 ~~~~l~~~~G~Vkwfn-----~~kGfGFI~~~ 29 (148)
T 3ts2_A 3 DEPQLLHGAGICKWFN-----VRMGFGFLSMT 29 (148)
T ss_dssp ---CCEEEEEEEEEEE-----TTTTEEEEEEE
T ss_pred cccccccceeEEEEEE-----CCCCeeEEeeC
Confidence 4556666677776553 24899999975
No 223
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase, alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase; HET: HEM BHF; 2.70A {Homo sapiens}
Probab=73.11 E-value=3.4 Score=27.51 Aligned_cols=47 Identities=21% Similarity=0.252 Sum_probs=15.4
Q ss_pred CccCCCCCCCCCCCcEEEEecCCCCC--CHHHHHHHhhcCCCEEEEEEc
Q psy10279 4 SQRRANVRLPPEVNRVLYIRNLPYKI--TGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 4 ~~~~~~~~~~~~~~~~l~V~nLp~~~--~~~~l~~~F~~~G~i~~~~l~ 50 (80)
+.+++..+.||.+...-++||+..-. ....+.++..+||.|..+++.
T Consensus 2 ~r~~~~~~~pPgP~~~P~iG~~~~~~~~~~~~~~~~~~~yG~i~~~~~g 50 (507)
T 3pm0_A 2 AKKTSSKGKPPGPFAWPLIGNAAAVGQAAHLSFARLARRYGDVFQIRLG 50 (507)
T ss_dssp --------------------------CCHHHHHHHHHHHHCSEEEEEET
T ss_pred CcccCCCCCCcCCCCCCeeCchhhcCccHHHHHHHHHHHhCCEEEEEEC
Confidence 33444455666665666789886432 234577888899999887653
No 224
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=72.38 E-value=9.4 Score=23.16 Aligned_cols=48 Identities=17% Similarity=0.106 Sum_probs=32.5
Q ss_pred cEEEEecCCC-C--------CCHHHHHHHh--hcCCCEEEEEEccCCCCCcEEEEEecc
Q psy10279 18 RVLYIRNLPY-K--------ITGDEMYDIF--GKYGAIRQIRIGNTPDTRYLTKSLVMK 65 (80)
Q Consensus 18 ~~l~V~nLp~-~--------~~~~~l~~~F--~~~G~i~~~~l~~~~~~~G~afv~f~~ 65 (80)
.++.|-|+|. . .+..+|.+.| ..|.++.-..+-......|++.|.|.+
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~ 71 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNK 71 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecC
Confidence 3556778876 2 4557899977 899987644433333357999999953
No 225
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=69.81 E-value=6.4 Score=25.13 Aligned_cols=32 Identities=22% Similarity=0.385 Sum_probs=25.9
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~ 50 (80)
..+.|+|||+.++..-+..++.. +.+....++
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm 142 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFL 142 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEE
Confidence 45789999999999999999987 777665544
No 226
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase; HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Probab=69.47 E-value=2 Score=28.43 Aligned_cols=41 Identities=17% Similarity=0.184 Sum_probs=28.0
Q ss_pred CCCCCCCCcEEEEecCCCCC---CHHHHHHHhhcCCCEEEEEEc
Q psy10279 10 VRLPPEVNRVLYIRNLPYKI---TGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~---~~~~l~~~F~~~G~i~~~~l~ 50 (80)
.++||.+...=+|||+..-. ....+.++..+||+|-.+++.
T Consensus 9 ~kLPPGP~~lP~iGn~~~~~~~~~~~~~~~~~~kYG~i~~~~~g 52 (479)
T 3tbg_A 9 GKLPPGPLPLPGLGNLLHVDFQNTPYCFDQLRRRFGDVFSLQLA 52 (479)
T ss_dssp CCCCCCSCCBTTTBTGGGCCTTSHHHHHHHHHHHHCSEEEEEET
T ss_pred CCCCCCCCCcCcccchHhhcCCCHHHHHHHHHHHhCCEEEEEEC
Confidence 35787765444678876432 234577888899999887764
No 227
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase, acetaminophen, oxidoreductase, heme, endoplasmic reticulum, iron, membrane; HET: HEM; 2.20A {Homo sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Probab=65.98 E-value=3.5 Score=27.22 Aligned_cols=42 Identities=19% Similarity=0.277 Sum_probs=27.9
Q ss_pred CCCCCCCCCcEEEEecCCCC---CCHHHHHHHhhcCCCEEEEEEc
Q psy10279 9 NVRLPPEVNRVLYIRNLPYK---ITGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 9 ~~~~~~~~~~~l~V~nLp~~---~~~~~l~~~F~~~G~i~~~~l~ 50 (80)
..++|+.+...-+|||+..- -....+.++..+||.|-.+++.
T Consensus 8 ~~~lpPgP~~~PliG~~~~~~~~~~~~~~~~~~~~yG~v~~~~~g 52 (476)
T 3e6i_A 8 KGKLPPGPFPLPIIGNLFQLELKNIPKSFTRLAQRFGPVFTLYVG 52 (476)
T ss_dssp --CCCCCCCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEET
T ss_pred CCCCCcCCCCcccccChhhhccccHhHHHHHHHHHhCCEEEEEEC
Confidence 34566666665678988643 2235678888899999877653
No 228
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=60.83 E-value=3.9 Score=26.21 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=25.6
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcCCCEEEEEEc
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~ 50 (80)
....|+|||+.++..-|..++.....+..+.++
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m 147 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFM 147 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEE
Confidence 456799999999999999998765566665444
No 229
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=55.96 E-value=3.2 Score=26.23 Aligned_cols=32 Identities=22% Similarity=0.519 Sum_probs=25.1
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEEEEc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l~ 50 (80)
...|+|||+.++..-|..++...+.+....++
T Consensus 98 ~~vv~NlPY~is~~il~~ll~~~~~~~~~~lm 129 (255)
T 3tqs_A 98 LRVVGNLPYNISTPLLFHLFSQIHCIEDMHFM 129 (255)
T ss_dssp EEEEEECCHHHHHHHHHHHHHTGGGEEEEEEE
T ss_pred eEEEecCCcccCHHHHHHHHhCCCChheEEEE
Confidence 34789999999999999999876666665544
No 230
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=55.78 E-value=12 Score=23.52 Aligned_cols=29 Identities=31% Similarity=0.560 Sum_probs=21.2
Q ss_pred EEEEecCCCCCCHHHHHHHhhcCCCEEEE
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGKYGAIRQI 47 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~~G~i~~~ 47 (80)
.+.|+|||+.++...+..++.....+...
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~ 120 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADM 120 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceE
Confidence 57799999999988887777643344443
No 231
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=51.35 E-value=8.2 Score=19.93 Aligned_cols=11 Identities=0% Similarity=-0.351 Sum_probs=8.0
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+|||||.=++
T Consensus 13 ~KGfGFI~~~d 23 (74)
T 2k5n_A 13 DKGFGFIKDEN 23 (74)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEEecCC
Confidence 47899988643
No 232
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.86 E-value=9.9 Score=19.55 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=15.8
Q ss_pred CCEEEEEEccCCCCCcEEEEEeccccccc
Q psy10279 42 GAIRQIRIGNTPDTRYLTKSLVMKCMIFL 70 (80)
Q Consensus 42 G~i~~~~l~~~~~~~G~afv~f~~~~~~~ 70 (80)
|.|.+|.- .++.|+|.|++-...-
T Consensus 28 GtV~kV~~-----~~~~ClV~FeD~s~~w 51 (68)
T 2e5p_A 28 GTIKKVDS-----AREVCLVQFEDDSQFL 51 (68)
T ss_dssp EEEEEEET-----TTTEEEEEETTTEEEE
T ss_pred eEEEEEec-----CCcEEEEEEccCCeee
Confidence 56666542 3678999997655543
No 233
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=50.57 E-value=9.9 Score=25.37 Aligned_cols=22 Identities=9% Similarity=0.034 Sum_probs=18.3
Q ss_pred EEEEecCCCCCCHHHHHHHhhc
Q psy10279 19 VLYIRNLPYKITGDEMYDIFGK 40 (80)
Q Consensus 19 ~l~V~nLp~~~~~~~l~~~F~~ 40 (80)
...|+|||++++..-|..++..
T Consensus 144 ~~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 144 FLTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEEECCSTTHHHHHHHHHHH
T ss_pred eEEEEECCCchHHHHHHHHHHh
Confidence 4689999999999888877763
No 234
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=49.15 E-value=11 Score=23.55 Aligned_cols=24 Identities=17% Similarity=0.261 Sum_probs=19.7
Q ss_pred cEEEEecCCCCCCHHHHHHHhhcC
Q psy10279 18 RVLYIRNLPYKITGDEMYDIFGKY 41 (80)
Q Consensus 18 ~~l~V~nLp~~~~~~~l~~~F~~~ 41 (80)
..+.|+|+|+.++..-+..++...
T Consensus 96 ~~~vv~NlPy~i~~~il~~ll~~~ 119 (249)
T 3ftd_A 96 ELKVVGNLPYNVASLIIENTVYNK 119 (249)
T ss_dssp SEEEEEECCTTTHHHHHHHHHHTG
T ss_pred CcEEEEECchhccHHHHHHHHhcC
Confidence 347799999999999888888653
No 235
>2kcm_A Cold shock domain family protein; nucleic acid binding protein, beta barrel, structural genomi 2, protein structure initiative; NMR {Shewanella oneidensis}
Probab=48.63 E-value=9.6 Score=19.68 Aligned_cols=11 Identities=0% Similarity=-0.372 Sum_probs=8.7
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+|||||+=++
T Consensus 11 ~KGfGFI~~~d 21 (74)
T 2kcm_A 11 AKKYGFIQGDD 21 (74)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 48999998754
No 236
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=42.26 E-value=17 Score=14.69 Aligned_cols=12 Identities=25% Similarity=0.565 Sum_probs=9.4
Q ss_pred HHHHHHHhhcCC
Q psy10279 31 GDEMYDIFGKYG 42 (80)
Q Consensus 31 ~~~l~~~F~~~G 42 (80)
-.+++.+|.++|
T Consensus 14 ikqvkklfkkwg 25 (26)
T 1ytr_A 14 IKQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHcC
Confidence 357888998887
No 237
>3ulj_A LIN28B, DNA-binding protein; beta barrel, cold shock domain fold, nucleic acid binding, D binding protein; 1.06A {Silurana} PDB: 4a4i_A
Probab=41.50 E-value=23 Score=18.95 Aligned_cols=9 Identities=0% Similarity=-0.389 Sum_probs=7.3
Q ss_pred CCcEEEEEe
Q psy10279 55 TRYLTKSLV 63 (80)
Q Consensus 55 ~~G~afv~f 63 (80)
.|||+||+-
T Consensus 19 ~KGfGFI~~ 27 (90)
T 3ulj_A 19 RMGFGFISM 27 (90)
T ss_dssp TTTEEEEEE
T ss_pred CCCeEEeEe
Confidence 489999964
No 238
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP LM2, cytochro monooxygenase; HET: HEM; 1.60A {Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A* 2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A* 3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Probab=40.88 E-value=16 Score=24.26 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=24.9
Q ss_pred CCCCCCCcEEEEecCCCC--CC-HHHHHHHhhcCCCEEEEEE
Q psy10279 11 RLPPEVNRVLYIRNLPYK--IT-GDEMYDIFGKYGAIRQIRI 49 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~--~~-~~~l~~~F~~~G~i~~~~l 49 (80)
+.||.+...-++||+..- -. ...+.++..+||+|..+++
T Consensus 10 ~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~ 51 (476)
T 1po5_A 10 KLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYL 51 (476)
T ss_dssp CCCCCSCCBTTTBTGGGCCTTCHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCcCCCCCCccccHHhccCCcHHHHHHHHHHHhCCEEEEEE
Confidence 455555444467887643 12 3557788889999987765
No 239
>1igq_A Transcriptional repressor protein KORB; SH3 domain, dimerization domain; 1.70A {Escherichia coli} SCOP: b.34.1.3 PDB: 1igu_A
Probab=40.67 E-value=26 Score=17.67 Aligned_cols=20 Identities=5% Similarity=-0.237 Sum_probs=14.0
Q ss_pred EEEEccCCC--CCcEEEEEecc
Q psy10279 46 QIRIGNTPD--TRYLTKSLVMK 65 (80)
Q Consensus 46 ~~~l~~~~~--~~G~afv~f~~ 65 (80)
.++++.+++ +.|+++|.|++
T Consensus 21 ~arlllnrRps~~G~~wiKyED 42 (62)
T 1igq_A 21 PARLILNRRPPAEGYAWLKYED 42 (62)
T ss_dssp EEEECTTBCCSSTTEEEEEETT
T ss_pred hhhhhhccCCCcCceEEEEEec
Confidence 355555554 47999999965
No 240
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=38.26 E-value=15 Score=18.41 Aligned_cols=11 Identities=0% Similarity=-0.294 Sum_probs=8.9
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+||+||.=++
T Consensus 12 ~kGfGFI~~~~ 22 (67)
T 3cam_A 12 AKGFGFITPDE 22 (67)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 48999999754
No 241
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=37.99 E-value=15 Score=18.24 Aligned_cols=11 Identities=9% Similarity=-0.302 Sum_probs=8.6
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+||+||.=.+
T Consensus 12 ~kGfGFI~~~~ 22 (66)
T 1c9o_A 12 EKGYGFIEVEG 22 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCeEEEecCC
Confidence 48999998653
No 242
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=36.64 E-value=16 Score=18.57 Aligned_cols=11 Identities=0% Similarity=-0.465 Sum_probs=8.6
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+||+||.=++
T Consensus 12 ~kGfGFI~~~~ 22 (73)
T 3a0j_A 12 EKGYGFIEREG 22 (73)
T ss_dssp TTTEEEEECTT
T ss_pred CCCEEEEecCC
Confidence 48999998654
No 243
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=35.58 E-value=17 Score=18.81 Aligned_cols=11 Identities=0% Similarity=-0.505 Sum_probs=8.9
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+||+||+=++
T Consensus 19 ~kGfGFI~~~~ 29 (79)
T 1h95_A 19 RNGYGFINRND 29 (79)
T ss_dssp TTTEEEEEEGG
T ss_pred CCCcEEEecCC
Confidence 48999999754
No 244
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=35.41 E-value=18 Score=18.01 Aligned_cols=11 Identities=0% Similarity=-0.366 Sum_probs=8.7
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+||+||.=.+
T Consensus 11 ~kGfGFI~~~~ 21 (66)
T 1g6p_A 11 KKGYGFITKDE 21 (66)
T ss_dssp TTTEEEEEETT
T ss_pred CCCEEEEecCC
Confidence 48999999753
No 245
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET: HEM 3QZ; 3.00A {Bos taurus}
Probab=34.66 E-value=50 Score=21.74 Aligned_cols=37 Identities=22% Similarity=0.332 Sum_probs=23.8
Q ss_pred CCCCCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEEEEEE
Q psy10279 10 VRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49 (80)
Q Consensus 10 ~~~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~~~l 49 (80)
.++||.+.. +..++..-....+.++..+||+|..+++
T Consensus 28 ~~lPPGP~~---l~~~~~~~~~~~~~~l~~~yG~v~~~~~ 64 (496)
T 3qz1_A 28 LHLPPLVPG---FLHLLQPNLPIHLLSLTQKLGPVYRLRL 64 (496)
T ss_dssp -CCCCBCSC---SCTTSSSCHHHHHHHGGGTSCSEEEECS
T ss_pred CCCCcCCcc---ccccCCCcchHHHHHHHHHhCCEEEEEe
Confidence 456665544 3344444455678889999999987654
No 246
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=34.58 E-value=22 Score=19.10 Aligned_cols=29 Identities=21% Similarity=0.524 Sum_probs=17.5
Q ss_pred CCCCCCCcEEEEec-C-CC-CCCHHHHHHHhh
Q psy10279 11 RLPPEVNRVLYIRN-L-PY-KITGDEMYDIFG 39 (80)
Q Consensus 11 ~~~~~~~~~l~V~n-L-p~-~~~~~~l~~~F~ 39 (80)
.+++...--+||.| + |. +.+-.+|++.|.
T Consensus 44 ~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k 75 (91)
T 4gdk_A 44 KLVASEQLFIYVNQSFAPSPDQEVGTLYECFG 75 (91)
T ss_dssp TCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC
T ss_pred CCCCCCeEEEEECCccCCChhhHHHHHHHHhC
Confidence 45556667889987 3 33 345456665554
No 247
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=33.61 E-value=20 Score=18.15 Aligned_cols=11 Identities=0% Similarity=-0.257 Sum_probs=8.8
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+|||||.=.+
T Consensus 16 ~kGfGFI~~~~ 26 (71)
T 3i2z_B 16 SKGFGFITPED 26 (71)
T ss_dssp TTTEEEEEETT
T ss_pred CCCcEEEecCC
Confidence 48999998754
No 248
>2od0_A Hypothetical protein VP1028; structural genomics, unknown functi 2, protein structure initiative, midwest center for structu genomics; 1.95A {Vibrio parahaemolyticus} SCOP: d.198.5.2
Probab=32.97 E-value=51 Score=17.65 Aligned_cols=21 Identities=14% Similarity=0.232 Sum_probs=15.8
Q ss_pred CHHHHHHHhhcCCCEEEEEEc
Q psy10279 30 TGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 30 ~~~~l~~~F~~~G~i~~~~l~ 50 (80)
+.+.+.+.|+..|.|..-++.
T Consensus 5 ~~~~i~e~l~~lg~i~~r~MF 25 (105)
T 2od0_A 5 ILKDSMKLFEALGTIKSRSMF 25 (105)
T ss_dssp HHHHHHHHHGGGSCCEEEEET
T ss_pred HHHHHHHHHhccCCceEeecc
Confidence 566788999999998765443
No 249
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing enzyme, coumarin 7-hydroxylase, nicotine oxidase, oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB: 1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A* 2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Probab=32.85 E-value=25 Score=23.26 Aligned_cols=39 Identities=23% Similarity=0.406 Sum_probs=24.2
Q ss_pred CCCCCCCcEEEEecCCCCC---CHHHHHHHhhcCCCEEEEEE
Q psy10279 11 RLPPEVNRVLYIRNLPYKI---TGDEMYDIFGKYGAIRQIRI 49 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~---~~~~l~~~F~~~G~i~~~~l 49 (80)
+.|+.+...-++||+..-. ....+.++..+||+|..+++
T Consensus 10 ~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~ 51 (476)
T 2fdv_A 10 KLPPGPTPLPFIGNYLQLNTEQMYNSLMKISERYGPVFTIHL 51 (476)
T ss_dssp BCCCCCCCBTTTBTGGGCCTTBHHHHHHHHHHHHCSEEEEEE
T ss_pred CCCCCCCCCcccccHhhcCCcchHHHHHHHHHHhCCEEEEEE
Confidence 3455544444578875431 23456777788999987765
No 250
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=32.80 E-value=29 Score=17.69 Aligned_cols=23 Identities=13% Similarity=0.047 Sum_probs=14.6
Q ss_pred CCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 42 GAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 42 G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
|.|.+|. ..+|.|+|.|.+-...
T Consensus 32 gtI~~V~-----~~~gtC~V~F~D~s~~ 54 (66)
T 2eqj_A 32 GTIKKIN-----ILKQSCFIIFEDSSKS 54 (66)
T ss_dssp EEEEEEE-----TTTTEEEEEETTTEEE
T ss_pred eEEEEEc-----cCCcEEEEEEccCCEE
Confidence 4555553 2368999999665444
No 251
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=30.69 E-value=31 Score=18.15 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=15.1
Q ss_pred CCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 42 GAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 42 G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
|.|.+|.. .++.|+|.|++-...
T Consensus 45 GTI~kV~~-----~~e~ClV~F~D~S~~ 67 (79)
T 2m0o_A 45 GTIKKVDS-----AREVCLVQFEDDSQF 67 (79)
T ss_dssp EEEEEEET-----TTTEEEEEETTSCEE
T ss_pred EEEEEecc-----CCCEEEEEEcCCCeE
Confidence 66666542 367899999765544
No 252
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=29.79 E-value=24 Score=18.72 Aligned_cols=10 Identities=0% Similarity=-0.283 Sum_probs=8.4
Q ss_pred CcEEEEEecc
Q psy10279 56 RYLTKSLVMK 65 (80)
Q Consensus 56 ~G~afv~f~~ 65 (80)
+||+||+-++
T Consensus 28 kGfGFI~~dd 37 (88)
T 2yty_A 28 DNFGFIETAN 37 (88)
T ss_dssp SSEEEEECSS
T ss_pred CCccEEecCC
Confidence 7999999754
No 253
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=29.09 E-value=25 Score=18.99 Aligned_cols=11 Identities=0% Similarity=-0.411 Sum_probs=8.7
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+||+||.-++
T Consensus 27 ~KGfGFI~~dd 37 (97)
T 2ytx_A 27 KEAFGFIERGD 37 (97)
T ss_dssp CSSEEEEECSS
T ss_pred eCCceEEecCC
Confidence 47999999754
No 254
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=28.74 E-value=21 Score=14.83 Aligned_cols=21 Identities=14% Similarity=0.192 Sum_probs=13.4
Q ss_pred cCCCCCCHHHHHHHhhcCCCE
Q psy10279 24 NLPYKITGDEMYDIFGKYGAI 44 (80)
Q Consensus 24 nLp~~~~~~~l~~~F~~~G~i 44 (80)
|-|+++.-.--.+-|.+||.+
T Consensus 2 naPFeiGi~ls~~~y~~yG~~ 22 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRA 22 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSC
T ss_pred CCceeEeeEecHHHHHHHhHH
Confidence 457776555555667788865
No 255
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=28.71 E-value=44 Score=16.58 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=14.4
Q ss_pred CCEEEEEEccCCCCCcEEEEEecccccc
Q psy10279 42 GAIRQIRIGNTPDTRYLTKSLVMKCMIF 69 (80)
Q Consensus 42 G~i~~~~l~~~~~~~G~afv~f~~~~~~ 69 (80)
|.|.++. ..++.++|.|.+.-..
T Consensus 22 GtI~~V~-----~~~~~clV~F~D~s~~ 44 (58)
T 4hcz_A 22 GTIKKVD-----SAREVCLVQFEDDSQF 44 (58)
T ss_dssp EEEEEEE-----TTTTEEEEEETTSCEE
T ss_pred EEEEEEe-----cCCCEEEEEEcCCCeE
Confidence 5565553 2356899999665444
No 256
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=28.37 E-value=26 Score=18.62 Aligned_cols=10 Identities=0% Similarity=-0.333 Sum_probs=8.4
Q ss_pred CcEEEEEecc
Q psy10279 56 RYLTKSLVMK 65 (80)
Q Consensus 56 ~G~afv~f~~ 65 (80)
+||+||.=++
T Consensus 28 KGfGFI~~dd 37 (89)
T 1wfq_A 28 TSYGFIQCSE 37 (89)
T ss_dssp SSEEEEEETT
T ss_pred CCeeEEecCC
Confidence 8999999754
No 257
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.22 E-value=64 Score=16.23 Aligned_cols=21 Identities=5% Similarity=-0.159 Sum_probs=14.2
Q ss_pred CCcEEEEEeccccccccChhh
Q psy10279 55 TRYLTKSLVMKCMIFLVNMEL 75 (80)
Q Consensus 55 ~~G~afv~f~~~~~~~~~~~~ 75 (80)
.++.|+|.|++-...-...++
T Consensus 34 ~~~~ClV~FeD~s~~wv~~kd 54 (63)
T 2e5q_A 34 SKQSCLVTFEDNSKYWVLWKD 54 (63)
T ss_dssp TTSEEEEEETTSCEEEEEGGG
T ss_pred CCCEEEEEEccCceeEEEeec
Confidence 368899999776665444444
No 258
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=26.92 E-value=26 Score=19.38 Aligned_cols=11 Identities=36% Similarity=0.742 Sum_probs=8.2
Q ss_pred HHHHHHhhcCC
Q psy10279 32 DEMYDIFGKYG 42 (80)
Q Consensus 32 ~~l~~~F~~~G 42 (80)
..|+++|.+||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 46888999988
No 259
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase, structural genomics, structural genomics consortium, SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo sapiens} PDB: 3sn5_A*
Probab=26.29 E-value=40 Score=22.20 Aligned_cols=41 Identities=15% Similarity=0.015 Sum_probs=25.0
Q ss_pred CCCCCCCCc-EEEEecCCCCC--CHHHHHHHhhcCCCEEEEEEc
Q psy10279 10 VRLPPEVNR-VLYIRNLPYKI--TGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 10 ~~~~~~~~~-~l~V~nLp~~~--~~~~l~~~F~~~G~i~~~~l~ 50 (80)
.+.||.+.. .-+|||+..-. ....+.++..+||.|-.+++.
T Consensus 12 ~~~pPgp~~~~P~iG~~~~~~~~~~~~~~~~~~kyG~i~~~~~g 55 (491)
T 3dax_A 12 TGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLM 55 (491)
T ss_dssp TTCCCEEEEEESCTTTTGGGTCCHHHHHHHHHHHHCSEEEEEET
T ss_pred CCCCCcCCCcccchhhHHHHhhCHHHHHHHHHHhcCCeEEEEEC
Confidence 344444333 34578875322 235677888899999777654
No 260
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=24.92 E-value=56 Score=17.20 Aligned_cols=19 Identities=16% Similarity=0.373 Sum_probs=16.4
Q ss_pred ecCCCCCCHHHHHHHhhcC
Q psy10279 23 RNLPYKITGDEMYDIFGKY 41 (80)
Q Consensus 23 ~nLp~~~~~~~l~~~F~~~ 41 (80)
|.|+..+++++|.++....
T Consensus 50 Gqi~~ki~e~~L~~lL~~i 68 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRV 68 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788899999999999864
No 261
>1x65_A UNR protein; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold, greek-KEY topology protein; NMR {Homo sapiens}
Probab=24.76 E-value=21 Score=19.03 Aligned_cols=10 Identities=0% Similarity=-0.280 Sum_probs=8.7
Q ss_pred CcEEEEEecc
Q psy10279 56 RYLTKSLVMK 65 (80)
Q Consensus 56 ~G~afv~f~~ 65 (80)
+||+||.-.+
T Consensus 18 KGfGFI~~~~ 27 (89)
T 1x65_A 18 DGFGFIKCVD 27 (89)
T ss_dssp TTBCEEEESS
T ss_pred CCcceeecCC
Confidence 8999999865
No 262
>3aqq_A Calcium-regulated heat stable protein 1; compact beta-barrel, cold shock domain, ssDNA binding, DNA B protein; 2.80A {Homo sapiens}
Probab=24.37 E-value=49 Score=19.38 Aligned_cols=11 Identities=0% Similarity=-0.336 Sum_probs=8.9
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+|||||.-++
T Consensus 73 ~KGfGFI~~dd 83 (147)
T 3aqq_A 73 SKGHGFITPAD 83 (147)
T ss_dssp TTTEEEEEESS
T ss_pred CCCeEEeccCC
Confidence 48999999854
No 263
>2ko4_A Mediator of RNA polymerase II transcription subun; GAL11, mediator, activator, CO-activator, MED15, trans nucleus, phosphoprotein, transcription regulation; NMR {Saccharomyces cerevisiae} PDB: 2lpb_A
Probab=24.31 E-value=54 Score=17.36 Aligned_cols=19 Identities=26% Similarity=0.361 Sum_probs=14.5
Q ss_pred EecCCCCC-CHHHHHHHhhc
Q psy10279 22 IRNLPYKI-TGDEMYDIFGK 40 (80)
Q Consensus 22 V~nLp~~~-~~~~l~~~F~~ 40 (80)
|-|||..+ |+.++.+++.+
T Consensus 29 IPnLPpgVnTW~qI~el~qk 48 (81)
T 2ko4_A 29 IPNIPPNINTWQQVTALAQQ 48 (81)
T ss_dssp SSSCCTTTCBHHHHHHHHTT
T ss_pred CCCCCCCcchHHHHHHHHHc
Confidence 45788875 78999988864
No 264
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=24.19 E-value=31 Score=17.88 Aligned_cols=10 Identities=0% Similarity=-0.463 Sum_probs=8.5
Q ss_pred CcEEEEEecc
Q psy10279 56 RYLTKSLVMK 65 (80)
Q Consensus 56 ~G~afv~f~~ 65 (80)
+||+||.-++
T Consensus 18 KGfGFI~~dd 27 (79)
T 2ytv_A 18 DQFGFINYEV 27 (79)
T ss_dssp SSEEEESCCC
T ss_pred ccceeEeCCC
Confidence 8999999863
No 265
>2lss_A Cold shock-like protein; CSD, CSP, oligonucleotide binding F fold, RNA binding protein, DNA binding protein; NMR {Rickettsia rickettsii}
Probab=29.70 E-value=16 Score=18.40 Aligned_cols=11 Identities=9% Similarity=-0.206 Sum_probs=8.6
Q ss_pred CCcEEEEEecc
Q psy10279 55 TRYLTKSLVMK 65 (80)
Q Consensus 55 ~~G~afv~f~~ 65 (80)
.+||+||.=++
T Consensus 15 ~kGfGFI~~~~ 25 (70)
T 2lss_A 15 TKNFGFIEQDN 25 (70)
Confidence 48999998654
No 266
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=22.70 E-value=63 Score=14.26 Aligned_cols=15 Identities=7% Similarity=0.242 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHhhcC
Q psy10279 27 YKITGDEMYDIFGKY 41 (80)
Q Consensus 27 ~~~~~~~l~~~F~~~ 41 (80)
..++.++|+.+|...
T Consensus 20 rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 20 IDTDLNQLKEVFSGI 34 (37)
T ss_dssp SCCCHHHHHHHHHTC
T ss_pred CcCCHHHHHHHHHHc
Confidence 467899999999865
No 267
>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A
Probab=22.60 E-value=97 Score=16.80 Aligned_cols=29 Identities=0% Similarity=-0.054 Sum_probs=22.5
Q ss_pred CCcEEEEecCCCCCCHHHHHHHhhcCCCE
Q psy10279 16 VNRVLYIRNLPYKITGDEMYDIFGKYGAI 44 (80)
Q Consensus 16 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i 44 (80)
.+.++|+++..+......|..++-.||..
T Consensus 9 ~g~~f~l~~~~p~~~r~~l~ryiia~GG~ 37 (104)
T 3pc6_A 9 EGKHFFLYGEFPGDERRRLIRYVTAFNGE 37 (104)
T ss_dssp TTCEEEEESCCSTTHHHHHHHHHHHTTCE
T ss_pred CCeEEEEcCCCcHHHHHHHHHHHHHcCCE
Confidence 46889998876555677888988889865
No 268
>2xk0_A Polycomb protein PCL; transcription, aromatic CAGE; NMR {Drosophila melanogaster}
Probab=22.23 E-value=50 Score=16.97 Aligned_cols=23 Identities=4% Similarity=-0.357 Sum_probs=15.3
Q ss_pred CcEEEEEeccccccccChhhhcc
Q psy10279 56 RYLTKSLVMKCMIFLVNMELSDK 78 (80)
Q Consensus 56 ~G~afv~f~~~~~~~~~~~~a~~ 78 (80)
++-|+|.|++.-..-...++-.+
T Consensus 41 ~~~ClV~FeD~S~~Wv~~kdi~k 63 (69)
T 2xk0_A 41 SDQYLIRFDDQSEQWCEPDKLRK 63 (69)
T ss_dssp SSCEEEEETTCCEEEECTTTEEC
T ss_pred CceEEEEecCCcceeeeHHHHHh
Confidence 67899999876666554444433
No 269
>3l3e_A DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, cell cycle checkpoints, acetylation, cytoplasm, cytoskeleton, DNA damage; HET: DNA; 1.26A {Homo sapiens} PDB: 3pd7_A* 3jve_A*
Probab=21.76 E-value=71 Score=16.88 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=23.9
Q ss_pred CCCCCcEEEEecCCCCCCHHHHHHHhhcCCCEE
Q psy10279 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIR 45 (80)
Q Consensus 13 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~ 45 (80)
.+-.+.+++|.+... .+..+|..+....|.-.
T Consensus 14 ~~l~g~~i~isg~~~-~~r~~l~~li~~~Gg~v 45 (107)
T 3l3e_A 14 KPLHKVVVCVSKKLS-KKQSELNGIAASLGADY 45 (107)
T ss_dssp CTTTTCEEEECGGGG-GGHHHHHHHHHHTTCEE
T ss_pred CCCCCeEEEEeCCCh-HhHHHHHHHHHHcCCEE
Confidence 344578888877654 67889999999888643
No 270
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein, alternative splicing, cholesterol biosynthesis, endoplasmic reticulum, heme, iron; HET: HEM KLN BCD; 2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Probab=20.99 E-value=17 Score=23.87 Aligned_cols=42 Identities=14% Similarity=0.263 Sum_probs=24.7
Q ss_pred CCCCCCC-CCcEEEEecCCCC--CCHHHHHHHhhcCCCEEEEEEc
Q psy10279 9 NVRLPPE-VNRVLYIRNLPYK--ITGDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 9 ~~~~~~~-~~~~l~V~nLp~~--~~~~~l~~~F~~~G~i~~~~l~ 50 (80)
..++||. +...=+|||+..- -...-+.++..+||+|-.+++.
T Consensus 9 ~~~~PPg~P~~lP~iG~l~~~~~~~~~~~~~~~~~yG~v~~l~l~ 53 (461)
T 3i3k_A 9 GVKSPPYIFSPIPFLGHAIAFGKSPIEFLENAYEKYGPVFSFTMV 53 (461)
T ss_dssp -CCCCCBCCCSSTTTBTHHHHHHCHHHHHHHHHHHHCSEEEEEET
T ss_pred CCCCCCCCCCCCCccccHHhhccCHHHHHHHHHHHhCCEEEEEec
Confidence 3455665 4333356776422 1234466777889999888764
No 271
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme, oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP: a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A* 2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Probab=20.96 E-value=90 Score=20.50 Aligned_cols=39 Identities=18% Similarity=0.277 Sum_probs=20.2
Q ss_pred CCCCCCCcEEEEecCCCCCCH---HHHHHHhhcCCCEEEEEE
Q psy10279 11 RLPPEVNRVLYIRNLPYKITG---DEMYDIFGKYGAIRQIRI 49 (80)
Q Consensus 11 ~~~~~~~~~l~V~nLp~~~~~---~~l~~~F~~~G~i~~~~l 49 (80)
+.||.+...-++||+..-... ..+.++..+||+|..+++
T Consensus 11 ~~pPgP~~~p~iG~~~~~~~~~~~~~~~~l~~~yG~v~~~~~ 52 (477)
T 1r9o_A 11 KLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYF 52 (477)
T ss_dssp BCCCCSSSCC-----CCBCHHHHHHHHHHHHHHHCSEEEEES
T ss_pred CCCCCCCCCceeccHhhcCCCChHHHHHHHHHHhCCEEEEEE
Confidence 355555445568998754221 345677778999887654
No 272
>3v8d_A Cholesterol 7-alpha-monooxygenase; cytochrome, oxidoreductase; HET: HEM 0GV; 1.90A {Homo sapiens} PDB: 3sn5_A* 3dax_A*
Probab=20.15 E-value=57 Score=21.58 Aligned_cols=45 Identities=18% Similarity=0.078 Sum_probs=28.5
Q ss_pred cCCCCCCCCCCCcE-EEEecCCCCCC--HHHHHHHhhcCCCEEEEEEc
Q psy10279 6 RRANVRLPPEVNRV-LYIRNLPYKIT--GDEMYDIFGKYGAIRQIRIG 50 (80)
Q Consensus 6 ~~~~~~~~~~~~~~-l~V~nLp~~~~--~~~l~~~F~~~G~i~~~~l~ 50 (80)
+++..++||.+... =+|||+..-.. ...+.++..+||+|..+++.
T Consensus 8 ~~~~~~~PPgp~~~lPliG~~~~~~~~p~~~~~~l~~~yGpv~~~~lg 55 (491)
T 3v8d_A 8 RRRQTGEPPLENGLIPYLGCALQFGANPLEFLRANQRKHGHVFTCKLM 55 (491)
T ss_dssp CCCCTTSCCEEEEEESSTTTTGGGTCCHHHHHHHHHHHHCSEEEEEET
T ss_pred hccCCCCCCCCCCCcceeccHHHHhcCHHHHHHHHHHHcCCceEEEEC
Confidence 34445667666553 46788765432 34566777789999888764
No 273
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=20.13 E-value=49 Score=17.71 Aligned_cols=9 Identities=0% Similarity=-0.426 Sum_probs=6.6
Q ss_pred CcEEEEEec
Q psy10279 56 RYLTKSLVM 64 (80)
Q Consensus 56 ~G~afv~f~ 64 (80)
+||+||.-.
T Consensus 28 kGfGFI~~~ 36 (101)
T 2bh8_A 28 KGFGFITPD 36 (101)
T ss_dssp GTEEEEEES
T ss_pred CCCEEEEeC
Confidence 688888754
Done!