RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10279
(80 letters)
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 51.9 bits (124), Expect = 4e-11
Identities = 42/74 (56%), Positives = 49/74 (66%), Gaps = 6/74 (8%)
Query: 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR------YLTKSLVM 64
RLPPEVNR+LYIRNLPYKIT +EMYDIFGKYG IRQIR+GNTP+TR Y
Sbjct: 1 RLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAK 60
Query: 65 KCMIFLVNMELSDK 78
L + ++
Sbjct: 61 NACDHLSGFNVCNR 74
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 44.6 bits (104), Expect = 8e-08
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
PE R L+I L ++ T + + F ++G + + P+T+
Sbjct: 3 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR 46
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 42.0 bits (98), Expect = 2e-07
Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 9/77 (11%)
Query: 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKS 61
R P+ N L + L T ++ ++F KYG I + I +R +
Sbjct: 3 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVD 62
Query: 62 LVMKCMIFLVNMELSDK 78
+ MEL +
Sbjct: 63 DAKEAKERANGMELDGR 79
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 41.4 bits (97), Expect = 5e-07
Identities = 12/68 (17%), Positives = 26/68 (38%), Gaps = 2/68 (2%)
Query: 13 PPEVNRVLYIRNL-PYKITGDEMYDIFGKYGAIRQIRI-GNTPDTRYLTKSLVMKCMIFL 70
P +N ++I NL + ++ IF KYG I + +Y+ + +
Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKGFAFVQYVNERNARAAVAGE 70
Query: 71 VNMELSDK 78
++ +
Sbjct: 71 DGRMIAGQ 78
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 39.9 bits (93), Expect = 1e-06
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
+ LY+ NLP IT D++ IFGKYG+I Q I T
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGR 46
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 39.2 bits (91), Expect = 2e-06
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69
L+I+NL + T + + +F K GAI+ I + + S+ + +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEY 50
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 38.8 bits (90), Expect = 4e-06
Identities = 14/71 (19%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD---------TRYLTKSLVMKCM 67
N L + LP +T E+Y +F G I RI + ++ + +
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAI 61
Query: 68 IFLVNMELSDK 78
L + + +K
Sbjct: 62 KVLNGITVRNK 72
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.3 bits (91), Expect = 4e-06
Identities = 10/57 (17%), Positives = 18/57 (31%)
Query: 11 RLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCM 67
RLP ++ NLPY +T + + + F + L +
Sbjct: 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFE 65
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 38.8 bits (90), Expect = 4e-06
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
N +Y + +T M F +G I +IR+
Sbjct: 18 NCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRV 50
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 38.4 bits (89), Expect = 4e-06
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
LY+ +L +T +Y+ F G I IR+ TR
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRR 40
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 37.3 bits (86), Expect = 1e-05
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
++I L ++ T + + + FG++G +++ + P T+
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKR 40
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 37.3 bits (86), Expect = 1e-05
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
PE R L+I L ++ T + + F ++G + + P+T+
Sbjct: 3 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKR 46
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 37.3 bits (86), Expect = 1e-05
Identities = 6/41 (14%), Positives = 18/41 (43%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
+ +Y+ L K++ ++++F + G + + T
Sbjct: 9 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQ 49
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 36.5 bits (84), Expect = 2e-05
Identities = 6/38 (15%), Positives = 16/38 (42%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
+++ L +++ + FG +G + I + T
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNK 39
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 36.6 bits (84), Expect = 3e-05
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
Query: 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR------YLTKSLVMKC 66
+ +Y+ NLP I ++ D+F KYGAIR I + N +
Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDA 69
Query: 67 MIFLVNMELSDK 78
+ +
Sbjct: 70 VYGRDGYDYDGY 81
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 36.2 bits (83), Expect = 4e-05
Identities = 12/53 (22%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69
R ++ L +I ++ D F G +R +RI + ++R +S + + F
Sbjct: 18 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSR---RSKGIAYVEF 67
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 36.1 bits (83), Expect = 4e-05
Identities = 7/36 (19%), Positives = 21/36 (58%)
Query: 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
+ + +RN+P++ E+ ++F +G ++ +R+
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRL 40
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 35.7 bits (82), Expect = 5e-05
Identities = 5/30 (16%), Positives = 19/30 (63%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
L + NL + ++ ++ ++F ++G +++ +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAV 32
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 35.8 bits (82), Expect = 5e-05
Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 9/68 (13%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKSLVMKCM 67
+ LY+ LP +T E+ +F +YG I RI T + + + +
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAI 65
Query: 68 IFLVNMEL 75
L +
Sbjct: 66 KGLNGQKP 73
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 35.7 bits (82), Expect = 6e-05
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 3/62 (4%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDT---RYLTKSLVMKCMIFLVNMELS 76
L++ NLP IT +EM +F KYG ++ I R T++L + L NM L
Sbjct: 11 LFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLR 70
Query: 77 DK 78
K
Sbjct: 71 GK 72
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 35.5 bits (81), Expect = 7e-05
Identities = 12/71 (16%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 12 LPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-----TRYLTKSLVMKC 66
PP + L++ N+P ++ +++ +F G + + D + + ++
Sbjct: 7 FPP--SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQA 64
Query: 67 MIFLVNMELSD 77
+I L N +L +
Sbjct: 65 LIDLHNHDLGE 75
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 35.9 bits (82), Expect = 7e-05
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCMIF 69
N +Y++ L +T D++ D F + G ++ + P K
Sbjct: 8 NSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 60
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 35.4 bits (81), Expect = 1e-04
Identities = 8/44 (18%), Positives = 21/44 (47%)
Query: 14 PEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
E R L+I L ++ T + + + + ++G + + P ++
Sbjct: 17 KEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 60
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 35.1 bits (80), Expect = 1e-04
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
R LY+ N+P+ IT + M D F + +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLA 41
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 34.6 bits (79), Expect = 2e-04
Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 7/66 (10%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDT-------RYLTKSLVMKCMIFLVN 72
++I+NL I +YD F +G I ++ + + T+ + + +
Sbjct: 11 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 70
Query: 73 MELSDK 78
M L+D+
Sbjct: 71 MLLNDR 76
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 34.6 bits (79), Expect = 2e-04
Identities = 8/42 (19%), Positives = 17/42 (40%)
Query: 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLT 59
++LY+RNL + + + F R+ D ++
Sbjct: 9 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVH 50
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 34.8 bits (79), Expect = 2e-04
Identities = 7/37 (18%), Positives = 18/37 (48%)
Query: 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
V+ V+++R L + ++ + K+G I + +
Sbjct: 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM 47
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 34.3 bits (78), Expect = 2e-04
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
++I NL +I +YD F +G I Q
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPK 30
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 33.9 bits (77), Expect = 3e-04
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP----DTRYLTKSLVMKCMIFLVN 72
R L +NL + IT DE+ ++F IR + + +++ K +
Sbjct: 16 ARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEKQG 75
Query: 73 MELSDK 78
E+ +
Sbjct: 76 AEIDGR 81
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 33.9 bits (77), Expect = 4e-04
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
RVLY+ L ++ ++ F +G I I+I +T
Sbjct: 5 KRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEK 45
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 33.0 bits (75), Expect = 5e-04
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
++I L + T ++ D F K+G + + P T
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGR 39
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 33.5 bits (76), Expect = 5e-04
Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 1/46 (2%)
Query: 14 PEVNRVLYIRNLPY-KITGDEMYDIFGKYGAIRQIRIGNTPDTRYL 58
E RV++I + K ++ + +G I I N + ++
Sbjct: 5 VETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFI 50
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 33.5 bits (76), Expect = 5e-04
Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 10/72 (13%)
Query: 17 NRVLYIRNLPYKITGDE----MYDIFGKYGAIRQIRIGNTPDTR------YLTKSLVMKC 66
N +YI NL KI DE ++ IF ++G I I + + R + S
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 67 MIFLVNMELSDK 78
+ + DK
Sbjct: 63 LRSMQGFPFYDK 74
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 33.0 bits (75), Expect = 6e-04
Identities = 9/48 (18%), Positives = 22/48 (45%)
Query: 10 VRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
V+ + L + LP+K T ++ + F +G + +++ T +
Sbjct: 1 VKRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGH 48
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 33.2 bits (75), Expect = 6e-04
Identities = 12/55 (21%), Positives = 25/55 (45%)
Query: 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCM 67
P E N+VLY++NL ++T ++ +F ++ + I T + +
Sbjct: 14 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFP 68
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 33.0 bits (75), Expect = 6e-04
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYG 42
LY+ NL + T +++Y++F K G
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSG 32
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 33.1 bits (75), Expect = 7e-04
Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
Query: 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP-------DTRYLTKSLVMKCMIFL 70
+ L++ N+P++ ++ +FG++G I + I + + + L
Sbjct: 12 KRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKL 71
Query: 71 VNMELSDK 78
+ +
Sbjct: 72 HGTVVEGR 79
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 32.8 bits (74), Expect = 7e-04
Identities = 10/38 (26%), Positives = 16/38 (42%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
L + LP +T +E +FG G I ++ T
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQ 42
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 32.7 bits (74), Expect = 8e-04
Identities = 8/71 (11%), Positives = 23/71 (32%), Gaps = 9/71 (12%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKSLVMKCM 67
N + + NL ++ ++F +G+I +I + T + + + +
Sbjct: 8 NATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAI 67
Query: 68 IFLVNMELSDK 78
+
Sbjct: 68 AGVSGFGYDHL 78
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 32.8 bits (74), Expect = 0.001
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 9/71 (12%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP---------DTRYLTKSLVMKCM 67
+L++ ++ + DE+ + F YG I+ I + Y T +
Sbjct: 7 GWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAK 66
Query: 68 IFLVNMELSDK 78
L E+ +
Sbjct: 67 EALNGAEIMGQ 77
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 32.5 bits (73), Expect = 0.001
Identities = 12/74 (16%), Positives = 30/74 (40%), Gaps = 6/74 (8%)
Query: 8 ANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD----TRYLTKSLV 63
A PP N++L++ NLP + + +F ++ +++R+ + T+
Sbjct: 1 AQTEQPP--NQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQS 58
Query: 64 MKCMIFLVNMELSD 77
L +++
Sbjct: 59 NAAKEALQGFKITP 72
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 32.7 bits (74), Expect = 0.001
Identities = 9/69 (13%), Positives = 22/69 (31%), Gaps = 7/69 (10%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD-------TRYLTKSLVMKCMIF 69
R LY+ NL +T + +F + G + ++ + +
Sbjct: 8 PRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAA 67
Query: 70 LVNMELSDK 78
+ ++ K
Sbjct: 68 MNGRKILGK 76
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 32.5 bits (73), Expect = 0.001
Identities = 5/51 (9%), Positives = 13/51 (25%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCM 67
L++ N P T + D+ + + + +
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVT 51
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 32.4 bits (73), Expect = 0.001
Identities = 9/61 (14%), Positives = 16/61 (26%), Gaps = 2/61 (3%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTP--DTRYLTKSLVMKCMIFLVNMELSD 77
+ ++NLP E++D+ Y N L +
Sbjct: 8 ILVKNLPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRG 67
Query: 78 K 78
K
Sbjct: 68 K 68
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 32.4 bits (73), Expect = 0.001
Identities = 10/68 (14%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKSLVMKCMIFL 70
L++RNL Y + +++ +F YG + ++ T+ ++ +K +
Sbjct: 11 LFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEV 70
Query: 71 VNMELSDK 78
+
Sbjct: 71 DGQVFQGR 78
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 32.3 bits (73), Expect = 0.001
Identities = 10/30 (33%), Positives = 18/30 (60%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
+ + NL Y +T D ++ IF K+G + +I
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIIT 39
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 31.6 bits (71), Expect = 0.002
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGN 51
LYI NL +T D++ +FG ++
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL 35
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 31.2 bits (70), Expect = 0.003
Identities = 5/38 (13%), Positives = 15/38 (39%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
+++ L T +++ F ++G + + T
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNR 39
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 31.6 bits (71), Expect = 0.003
Identities = 7/31 (22%), Positives = 14/31 (45%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQI 47
L++ L + + F ++G+IR I
Sbjct: 17 TTRLWVGGLGPNTSLAALAREFDRFGSIRTI 47
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 31.4 bits (70), Expect = 0.005
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKY 41
P+V R L + +P + ++ +F +Y
Sbjct: 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERY 66
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 30.4 bits (68), Expect = 0.005
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 9/68 (13%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKSLVMKCMIFL 70
L+I LP + D++ ++ +G ++ + T Y+ ++ + + L
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 71 VNMELSDK 78
M+L DK
Sbjct: 64 NGMQLGDK 71
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.6 bits (68), Expect = 0.006
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 11 RLPPEVNRVLYIRNLPYKITGDEMYDIF 38
++ +RVL+IR LP ++T E+ +
Sbjct: 2 KMDGAPSRVLHIRKLPGEVTETEVIALG 29
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 30.8 bits (69), Expect = 0.006
Identities = 7/33 (21%), Positives = 12/33 (36%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
N L+I +P +E+ + K I
Sbjct: 1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVI 33
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 30.2 bits (67), Expect = 0.006
Identities = 7/30 (23%), Positives = 15/30 (50%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
+ ++NLP +++Y F G I + +
Sbjct: 3 VLVKNLPKSYNQNKVYKYFKHCGPIIHVDV 32
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 30.7 bits (68), Expect = 0.007
Identities = 8/43 (18%), Positives = 20/43 (46%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLT 59
V+ +NLP E+ + F ++G++ ++ + T +
Sbjct: 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVE 52
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 30.4 bits (68), Expect = 0.008
Identities = 3/30 (10%), Positives = 14/30 (46%)
Query: 20 LYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
+ ++ + + ++ KYG + ++ +
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNV 59
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.0 bits (67), Expect = 0.009
Identities = 6/32 (18%), Positives = 16/32 (50%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIR 48
+ +++ +T DE+ + F +YG + +
Sbjct: 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVF 36
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 30.1 bits (67), Expect = 0.010
Identities = 16/67 (23%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 17 NRVLYIRNL-PYKITGDEMYDIFGKYGAIRQIRIGNTPD----TRYLTKSLVMKCMIFLV 71
N VL + NL P ++T ++ +FG YG +++++I + + M L
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLN 61
Query: 72 NMELSDK 78
+L K
Sbjct: 62 GHKLHGK 68
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 29.8 bits (66), Expect = 0.012
Identities = 7/32 (21%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 12 LPPEVN--RVLYIRNLPYKITGDEMYDIFGKY 41
LP +V + ++IRNL + + + ++ ++
Sbjct: 1 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQF 32
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 29.7 bits (66), Expect = 0.015
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
+++R LPY+ T +++Y+ F +R
Sbjct: 15 GHCVHMRGLPYRATENDIYNFFSPLNPMRVHIE 47
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 28.9 bits (64), Expect = 0.026
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKY 41
NR +YI+ P T D++ +
Sbjct: 6 NRSVYIKGFPTDATLDDIKEWLEDK 30
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 28.5 bits (63), Expect = 0.034
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKY 41
P N L+I +LP + ++ +F +
Sbjct: 16 PEGAN--LFIYHLPQEFGDQDLLQMFMPF 42
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 28.6 bits (63), Expect = 0.035
Identities = 5/41 (12%), Positives = 17/41 (41%)
Query: 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYL 58
+ + +L + ++++ +F +G I+ I +
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGII 52
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 28.6 bits (63), Expect = 0.036
Identities = 6/51 (11%), Positives = 16/51 (31%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKCM 67
+ + +R LP+ + +E+ F + T ++
Sbjct: 15 DGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFA 65
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 28.3 bits (62), Expect = 0.057
Identities = 12/64 (18%), Positives = 23/64 (35%)
Query: 3 MSQRRANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSL 62
Q+R+ R P E +Y++ LP++ + D F K + T
Sbjct: 4 SGQKRSRSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEG 63
Query: 63 VMKC 66
++
Sbjct: 64 FVEF 67
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 27.9 bits (61), Expect = 0.065
Identities = 5/49 (10%), Positives = 14/49 (28%)
Query: 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSLVMKC 66
+I N+P+ IT ++ + +++
Sbjct: 9 VCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQF 57
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 27.8 bits (61), Expect = 0.085
Identities = 4/35 (11%), Positives = 14/35 (40%)
Query: 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQI 47
+ V+ L ++ +++ + K G + +
Sbjct: 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL 50
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 27.0 bits (59), Expect = 0.11
Identities = 7/40 (17%), Positives = 15/40 (37%)
Query: 18 RVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
+ +++ + + D F +YG I I I +
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 42
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 26.8 bits (58), Expect = 0.11
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 20 LYIRNLPYKITGDEMYDIFGKY 41
+ IR LP +T E++D+ Y
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY 22
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 27.1 bits (59), Expect = 0.12
Identities = 11/76 (14%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 8 ANVRLPPEVNRVLYIRNLPYKITGDEMYDIF---GKYGAIRQIRIGNTPDTRYLTKSLVM 64
A+VR+ ++++ L ++ E+ GK+G I ++ I N+
Sbjct: 1 ASVRV--VQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSAS 58
Query: 65 KCMIFLVNMELSDKLE 80
+ ++ + + ++
Sbjct: 59 AYVTYIRSEDALRAIQ 74
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 26.9 bits (59), Expect = 0.12
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRI 49
++ ++N+P+ ++ DE+ D F Y I
Sbjct: 9 PTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVC 41
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 26.8 bits (58), Expect = 0.15
Identities = 6/44 (13%), Positives = 13/44 (29%)
Query: 13 PPEVNRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR 56
L+I NL + E+ + A + + +
Sbjct: 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGT 52
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 27.0 bits (59), Expect = 0.15
Identities = 4/38 (10%), Positives = 12/38 (31%)
Query: 4 SQRRANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKY 41
S + + + + LP + ++ D +
Sbjct: 2 SSGSSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREA 39
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 25.5 bits (55), Expect = 0.38
Identities = 7/22 (31%), Positives = 10/22 (45%)
Query: 20 LYIRNLPYKITGDEMYDIFGKY 41
LYIR L T ++ + Y
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPY 22
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 25.9 bits (56), Expect = 0.43
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 9/71 (12%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNT---------PDTRYLTKSLVMKCM 67
R +++ N+PY+ T +++ DIF + G + R+ Y + + M
Sbjct: 8 LRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAM 67
Query: 68 IFLVNMELSDK 78
L E S +
Sbjct: 68 RNLNGREFSGR 78
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 25.1 bits (54), Expect = 0.75
Identities = 6/26 (23%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 17 NRVLYIRNLPYKIT-GDEMYDIFGKY 41
R + IRNL ++ + + + F +
Sbjct: 4 GREIMIRNLSTELLDENLLRESFEGF 29
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.1 bits (54), Expect = 0.84
Identities = 7/38 (18%), Positives = 14/38 (36%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPD 54
+++ LPY T + F +G I + +
Sbjct: 10 FTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ 47
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 24.7 bits (53), Expect = 0.94
Identities = 9/71 (12%), Positives = 24/71 (33%), Gaps = 9/71 (12%)
Query: 17 NRVLYIRNLPYKITGDEMYDIFGKYGAIRQIRIGNTPDTR---------YLTKSLVMKCM 67
L++ L + + +F KYG I ++ + +T+ + M
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 68 IFLVNMELSDK 78
+ + + +
Sbjct: 65 MAMNGKSVDGR 75
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 25.1 bits (53), Expect = 1.1
Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 11 RLPPEVNRVLYIRNLPYKITGD---EMYDIFGKYGAIRQIRIGNTP 53
+LPP + I N+ D + ++ YG + + G P
Sbjct: 3 KLPPGPTPLPVIGNILQIGIKDISKSLTNLSKVYGPVFTLYFGLKP 48
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 24.7 bits (53), Expect = 1.1
Identities = 7/22 (31%), Positives = 12/22 (54%)
Query: 20 LYIRNLPYKITGDEMYDIFGKY 41
LYI NLP + E+ ++ +
Sbjct: 21 LYISNLPLSMDEQELENMLKPF 42
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 23.7 bits (50), Expect = 2.3
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 17 NRVLYIRNLPYKITGDEMYDIF 38
NRV + LP + ++ D
Sbjct: 1 NRV-VVSGLPPSGSWQDLKDHM 21
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 23.8 bits (50), Expect = 2.5
Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
Query: 4 SQRRANVRLPPEVNRVLYIRNLPY-KITGDEMYDIFGKYGAIRQIRIGNTPDTRYLTKSL 62
+ E+ RV+++ NLP+ + + + YG I+ + ++
Sbjct: 5 GKPDQKFDQKQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMET 64
Query: 63 VMKCMIFLVNMEL 75
M + +
Sbjct: 65 REDAMAMVDHCLK 77
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 23.9 bits (50), Expect = 3.0
Identities = 11/46 (23%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
Query: 11 RLPPEVNRVLYIRNLP---YKITGDEMYDIFGKYGAIRQIRIGNTP 53
+LPP + + + NL K + KYG + + +G+ P
Sbjct: 2 KLPPGPSPLPVLGNLLQMDRKGLLRSFLRLREKYGDVFTVYLGSRP 47
>d1a34a_ b.121.7.1 (A:) STMV coat protein {Satellite tobacco mosaic
virus [TaxId: 12881]}
Length = 147
Score = 23.6 bits (50), Expect = 3.4
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 7 RANVRLPPEVNRVLYIRNLPYKITGDEMYDIFGKYGAI 44
RA +L P VN ++R P TGD + G+ I
Sbjct: 67 RAWTQLTPPVNEYSFVRLKPLFKTGDSTEEFEGRASNI 104
>d1kqra_ b.29.1.14 (A:) vp4 sialic acid binding domain {Rhesus
rotavirus [TaxId: 10969]}
Length = 160
Score = 23.2 bits (50), Expect = 4.2
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 25 LPYKITGDEMYDIFGKYGAIRQIRIGNTPDTRY 57
P + Y +FG QI I N T++
Sbjct: 45 EPNVTSETRSYTLFGT---QEQITIANASQTQW 74
>d1dl2a_ a.102.2.1 (A:) Class I alpha-1;2-mannosidase, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 511
Score = 22.7 bits (48), Expect = 8.1
Identities = 5/24 (20%), Positives = 8/24 (33%), Gaps = 3/24 (12%)
Query: 12 LPPEVNRVLYIRNLPYKITGDEMY 35
PE + Y ++ D Y
Sbjct: 394 QRPETVESIMFM---YHLSHDHKY 414
>d2di4a1 a.269.1.1 (A:406-607) Cell division protein FtsH,
C-terminal domain {Aquifex aeolicus [TaxId: 63363]}
Length = 202
Score = 22.5 bits (47), Expect = 9.4
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 29 ITGDEMYDIFGKYG 42
IT +E ++F YG
Sbjct: 181 ITCEEFVEVFKLYG 194
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.141 0.406
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 298,797
Number of extensions: 12300
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 130
Number of HSP's successfully gapped: 93
Length of query: 80
Length of database: 2,407,596
Length adjustment: 46
Effective length of query: 34
Effective length of database: 1,776,016
Effective search space: 60384544
Effective search space used: 60384544
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.5 bits)