BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1028
(424 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1LG1|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Chitobiose
pdb|1LG2|A Chain A, Crystal Structure Of Human Chitotriosidase In Complex With
Ethylene Glycol
pdb|1LQ0|A Chain A, Crystal Structure Of Human Chitotriosidase At 2.2 Angstrom
Resolution
Length = 365
Score = 223 bits (569), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 207/371 (55%), Gaps = 26/371 (7%)
Query: 69 QLFCYYS----LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVV 124
+L CY++ Q + LP L+P+LCTH++ AFA ++ N+ ++ E + Y++
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMT-NHQLSTTEWNDETLYQEFN 60
Query: 125 AMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182
+K +NP LK L+++ + GT F V+T NR F S + FL +++ DG+DLDWE+
Sbjct: 61 GLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY 120
Query: 183 PGWPGPNKSHEKRMFSKLLQ------QLKFTLSG--RFLMTVAVAAPGPIIDRAYDVPLM 234
PG G + + +K F+ L+Q Q + SG R L++ AV A +D Y+V +
Sbjct: 121 PGSQG-SPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
+ +DFV++M YD+H + V G N+PLY + G SLN + +V +L KG PA+
Sbjct: 180 AQNLDFVNLMAYDFHGS--WEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPAS 237
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL+LG+PTYG S+TL + T G PA G G G + Y + ++ + +I
Sbjct: 238 KLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-KGATKQRI 296
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAA-KYHTSPY 409
D+ VPY +R +QW+ FD+ S K YL KGL GAMVW L+ DD+A + Y
Sbjct: 297 QDQK--VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRY 354
Query: 410 PLIKRIKTVLT 420
PLI+ ++ L+
Sbjct: 355 PLIQTLRQELS 365
>pdb|1GUV|A Chain A, Structure Of Human Chitotriosidase
Length = 366
Score = 223 bits (568), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 207/371 (55%), Gaps = 26/371 (7%)
Query: 69 QLFCYYS----LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVV 124
+L CY++ Q + LP L+P+LCTH++ AFA ++ N+ ++ E + Y++
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMT-NHQLSTTEWNDETLYQEFN 60
Query: 125 AMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182
+K +NP LK L+++ + GT F V+T NR F S + FL +++ DG+DLDWE+
Sbjct: 61 GLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY 120
Query: 183 PGWPGPNKSHEKRMFSKLLQ------QLKFTLSG--RFLMTVAVAAPGPIIDRAYDVPLM 234
PG G + + +K F+ L+Q Q + SG R L++ AV A +D Y+V +
Sbjct: 121 PGSQG-SPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
+ +DFV++M YD+H + V G N+PLY + G SLN + +V +L KG PA+
Sbjct: 180 AQNLDFVNLMAYDFHGS--WEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLEKGTPAS 237
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL+LG+PTYG S+TL + T G PA G G G + Y + ++ + +I
Sbjct: 238 KLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-KGATKQRI 296
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAA-KYHTSPY 409
D+ VPY +R +QW+ FD+ S K YL KGL GAMVW L+ DD+A + Y
Sbjct: 297 QDQK--VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRY 354
Query: 410 PLIKRIKTVLT 420
PLI+ ++ L+
Sbjct: 355 PLIQTLRQELS 365
>pdb|1HKI|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Glucoallosamidin B
pdb|1HKJ|A Chain A, Crystal Structure Of Human Chitinase In Complex With
Methylallosamidin
pdb|1HKM|A Chain A, High Resolution Crystal Structure Of Human Chitinase In
Complex With Demethylallosamidin
Length = 365
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 206/371 (55%), Gaps = 26/371 (7%)
Query: 69 QLFCYYS----LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVV 124
+L CY++ Q + LP L+P+LCTH++ AFA ++ N+ ++ E + Y++
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMT-NHQLSTTEWNDETLYQEFN 60
Query: 125 AMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182
+K +NP LK L+++ + GT F V+T NR F S + FL +++ DG+DLDWE+
Sbjct: 61 GLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY 120
Query: 183 PGWPGPNKSHEKRMFSKLLQ------QLKFTLSG--RFLMTVAVAAPGPIIDRAYDVPLM 234
PG G + + +K F+ L+Q Q + SG R L++ AV A +D Y+V +
Sbjct: 121 PGSQG-SPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
+ +DFV++M YD+H + V G N+PLY G SLN + +V +L KG PA+
Sbjct: 180 AQNLDFVNLMAYDFHGS--WEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPAS 237
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL+LG+PTYG S+TL + T G PA G G G + Y + ++ + +I
Sbjct: 238 KLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-KGATKQRI 296
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAA-KYHTSPY 409
D+ VPY +R +QW+ FD+ S K YL KGL GAMVW L+ DD+A + Y
Sbjct: 297 QDQK--VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRY 354
Query: 410 PLIKRIKTVLT 420
PLI+ ++ L+
Sbjct: 355 PLIQTLRQELS 365
>pdb|1HKK|A Chain A, High Resoultion Crystal Structure Of Human Chitinase In
Complex With Allosamidin
Length = 364
Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/370 (35%), Positives = 205/370 (55%), Gaps = 26/370 (7%)
Query: 69 QLFCYYS----LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVV 124
+L CY++ Q + LP L+P+LCTH++ AFA ++ N+ ++ E + Y++
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMT-NHQLSTTEWNDETLYQEFN 60
Query: 125 AMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182
+K +NP LK L+++ + GT F V+T NR F S + FL +++ DG+DLDWE+
Sbjct: 61 GLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY 120
Query: 183 PGWPGPNKSHEKRMFSKLLQ------QLKFTLSG--RFLMTVAVAAPGPIIDRAYDVPLM 234
PG G + + +K F+ L+Q Q + SG R L++ AV A +D Y+V +
Sbjct: 121 PGSQG-SPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
+ +DFV++M YD+H + V G N+PLY G SLN + +V +L KG PA+
Sbjct: 180 AQNLDFVNLMAYDFHGS--WEKVTGHNSPLYKRQEQSGAAASLNVDAAVQQWLQKGTPAS 237
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL+LG+PTYG S+TL + T G PA G G G + Y + ++ + +I
Sbjct: 238 KLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-KGATKQRI 296
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAA-KYHTSPY 409
D+ VPY +R +QW+ FD+ S K YL KGL GAMVW L+ DD+A + Y
Sbjct: 297 QDQK--VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRY 354
Query: 410 PLIKRIKTVL 419
PLI+ ++ L
Sbjct: 355 PLIQTLRQEL 364
>pdb|1WAW|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Human
Chitinase
pdb|1WB0|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitor Argifin Against Human
Chitinase
Length = 445
Score = 221 bits (564), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 207/371 (55%), Gaps = 26/371 (7%)
Query: 69 QLFCYYS----LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVV 124
+L CY++ Q + LP L+P+LCTH++ AFA ++ N+ ++ E + Y++
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMT-NHQLSTTEWNDETLYQEFN 60
Query: 125 AMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182
+K +NP LK L+++ + GT F V+T NR F S + FL +++ DG+DLDWE+
Sbjct: 61 GLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY 120
Query: 183 PGWPGPNKSHEKRMFSKLLQ------QLKFTLSG--RFLMTVAVAAPGPIIDRAYDVPLM 234
PG G + + +K F+ L+Q Q + SG R L++ AV A +D Y+V +
Sbjct: 121 PGSQG-SPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
+ +DFV++M YD+H + V G N+PLY + G SLN + +V +L KG PA+
Sbjct: 180 AQNLDFVNLMAYDFHGS--WEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPAS 237
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL+LG+PTYG S+TL + T G PA G G G + Y + ++ + +I
Sbjct: 238 KLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW-KGATKQRI 296
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAA-KYHTSPY 409
D+ VPY +R +QW+ FD+ S K YL KGL GAMVW L+ DD+A + Y
Sbjct: 297 QDQK--VPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRY 354
Query: 410 PLIKRIKTVLT 420
PLI+ ++ L+
Sbjct: 355 PLIQTLRQELS 365
>pdb|2YBT|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBT|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin C
pdb|2YBU|A Chain A, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|B Chain B, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|C Chain C, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|D Chain D, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|E Chain E, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
pdb|2YBU|F Chain F, Crystal Structure Of Human Acidic Chitinase In Complex
With Bisdionin F
Length = 381
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/374 (34%), Positives = 201/374 (53%), Gaps = 24/374 (6%)
Query: 65 VDNYQLFCYYS-LPQNSSGL---LPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYY 120
+ YQL CY++ Q GL +P +NP LCTH++ AFA + +NN + +E + V Y
Sbjct: 2 AEAYQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGM-QNNEITTIEWNDVTLY 60
Query: 121 RDVVAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDL 178
+ +K N LK L+++ + GT F VST NR F S+++FL ++ DG+D
Sbjct: 61 QAFNGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDF 120
Query: 179 DWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSG--------RFLMTVAVAAPGPIIDRAYD 230
DWE+PG G + +K +F+ L+Q+++ R ++T AVAA I Y+
Sbjct: 121 DWEYPGSRG-SPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYE 179
Query: 231 VPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKG 290
+P + + +D++ +M YD H + G N+PLY TD G LN ++ +NY+ G
Sbjct: 180 IPQLSQYLDYIHVMTYDLHGS--WEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNG 237
Query: 291 IPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPD 346
PA KL++G PTYGH++ L NP +T G P + G G G Y + FL++
Sbjct: 238 APAEKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGA 297
Query: 347 TIQIFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY-H 405
T Q +D VPYAY+G+ W+ +DN S K ++L GAMVW ++ DD+ + +
Sbjct: 298 T-QGWDAPQEVPYAYQGNVWVGYDNIKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCN 356
Query: 406 TSPYPLIKRIKTVL 419
+PLI +K L
Sbjct: 357 QGKFPLISTLKKAL 370
>pdb|3FXY|A Chain A, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|B Chain B, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|C Chain C, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FXY|D Chain D, Acidic Mammalian Chinase, Catalytic Domain
pdb|3FY1|A Chain A, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3FY1|B Chain B, The Acidic Mammalian Chitinase Catalytic Domain In Complex
With Methylallosamidin
pdb|3RM4|A Chain A, Amcase In Complex With Compound 1
pdb|3RM4|B Chain B, Amcase In Complex With Compound 1
pdb|3RM8|A Chain A, Amcase In Complex With Compound 2
pdb|3RM8|B Chain B, Amcase In Complex With Compound 2
pdb|3RM9|A Chain A, Amcase In Complex With Compound 3
pdb|3RM9|B Chain B, Amcase In Complex With Compound 3
pdb|3RME|A Chain A, Amcase In Complex With Compound 5
pdb|3RME|B Chain B, Amcase In Complex With Compound 5
Length = 395
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/371 (34%), Positives = 200/371 (53%), Gaps = 24/371 (6%)
Query: 68 YQLFCYYS-LPQNSSGL---LPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
YQL CY++ Q GL +P +NP LCTH++ AFA + +NN + +E + V Y+
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGM-QNNEITTIEWNDVTLYQAF 59
Query: 124 VAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K N LK L+++ + GT F VST NR F S+++FL ++ DG+D DWE
Sbjct: 60 NGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWE 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTLSG--------RFLMTVAVAAPGPIIDRAYDVPL 233
+PG G + +K +F+ L+Q+++ R ++T AVAA I Y++P
Sbjct: 120 YPGSRG-SPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQ 178
Query: 234 MGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPA 293
+ + +D++ +M YD H + G N+PLY TD G LN ++ +NY+ G PA
Sbjct: 179 LSQYLDYIHVMTYDLHGS--WEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPA 236
Query: 294 NKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQ 349
KL++G PTYGH++ L NP +T G P + G G G Y + FL++ T Q
Sbjct: 237 EKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGAT-Q 295
Query: 350 IFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY-HTSP 408
+D VPYAY+G+ W+ +DN S K ++L GAMVW ++ DD+ + +
Sbjct: 296 GWDAPQEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQGK 355
Query: 409 YPLIKRIKTVL 419
+PLI +K L
Sbjct: 356 FPLISTLKKAL 366
>pdb|2ESC|A Chain A, Crystal Structure Of A 40 Kda Protective Signalling
Protein From Bovine (Spc-40) At 2.1 A Resolution
Length = 361
Score = 215 bits (548), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 206/371 (55%), Gaps = 32/371 (8%)
Query: 68 YQLFCYY-SLPQNSSG---LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CYY S Q G P ++P LCTH++ +FA +S NN + E + V Y +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANIS-NNEIDTWEWNDVTLYDTL 59
Query: 124 VAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K NPNLK L+SV + G+ F+K S +R F +S+ FL H DG+DL W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTL-------SGRFLMTVAVAAPGPIIDRAYDVPLM 234
+PGW +KR + L++++K + + L++ AV A IDR YD+ +
Sbjct: 120 YPGW------RDKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAIDRGYDIAQI 173
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
R +DF+S++ YD+H + +G ++PL+ +D G + NA+++V+Y L G PAN
Sbjct: 174 SRHLDFISLLTYDFHGG--WRGTVGHHSPLFRGNSD-GSSRFSNADYAVSYMLRLGAPAN 230
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGN----QGFVDYIDTVAFLRDPDTIQI 350
KL++G+PT+G SYTL + ST G P + G G +G + Y + FL T +
Sbjct: 231 KLVMGIPTFGRSYTLAS-SSTRVGAPISGPGIPGQFTKEKGILAYYEICDFLHGATTHRF 289
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY--HTSP 408
D+ VPYA +G+QW+++D++ S+ K YL ++ LAGAMVW L+ DD+ +
Sbjct: 290 RDQQ--VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLT 347
Query: 409 YPLIKRIKTVL 419
+PL IK VL
Sbjct: 348 FPLTSAIKDVL 358
>pdb|4AY1|A Chain A, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|B Chain B, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|C Chain C, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|D Chain D, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|E Chain E, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|F Chain F, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|G Chain G, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|H Chain H, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|I Chain I, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|J Chain J, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|K Chain K, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
pdb|4AY1|L Chain L, Human Ykl-39 Is A Pseudo-Chitinase With Retained
Chitooligosaccharide Binding Properties
Length = 365
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 122/372 (32%), Positives = 208/372 (55%), Gaps = 31/372 (8%)
Query: 68 YQLFCYYSL----PQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CY++ Q P ++P LC+H++ +FA + +NN V + V Y+ +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASI-ENNKVIIKDKSEVMLYQTI 60
Query: 124 VAMKLLNPNLKVLISVTD--AGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
++K NP LK+L+S+ G+ F V + +RL F SI+ FL HN DG+D+ W
Sbjct: 61 NSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWI 120
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLK------FTLS--GRFLMTVAVAAPGPIIDRAYDVPL 233
+P E F+ L+ +L FT S R L+T V+A +ID +Y V
Sbjct: 121 YP------DQKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEK 174
Query: 234 MGRLVDFVSIMGYDYHSYIWYLPVL-GPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIP 292
+ + +DF++++ +D+H W P++ G N+PL D+G N ++V Y+++KG+P
Sbjct: 175 LAKDLDFINLLSFDFHGS-WEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMP 233
Query: 293 ANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTI 348
+ K+++G+PTYGHS+TL + ++T G PA+ G G + GF+ Y + FL+
Sbjct: 234 SEKVVMGIPTYGHSFTLASAETT-VGAPASGPGAAGPITESSGFLAYYEICQFLKGAKIT 292
Query: 349 QIFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAK-YHTS 407
++ D+ VPYA +G+QW+ +D+ S+ K ++L + L GAM+W ++ DD+ K +
Sbjct: 293 RLQDQQ--VPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDDFTGKSCNQG 350
Query: 408 PYPLIKRIKTVL 419
PYPL++ +K L
Sbjct: 351 PYPLVQAVKRSL 362
>pdb|1OWQ|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein (Spc-40)
Secreted During Involution
Length = 361
Score = 215 bits (547), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 206/371 (55%), Gaps = 32/371 (8%)
Query: 68 YQLFCYY-SLPQNSSG---LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CYY S Q G P ++P LCTH++ +FA +S NN + E + V Y +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANIS-NNEIDTWEWNDVTLYDTL 59
Query: 124 VAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K NPNLK L+SV + G+ F+K S +R F +S+ FL H DG+DL W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTL-------SGRFLMTVAVAAPGPIIDRAYDVPLM 234
+PGW +KR + L++++K + + L++ AV A IDR YD+ +
Sbjct: 120 YPGW------RDKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVPAGKIAIDRGYDIAQI 173
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
R +DF+S++ YD+H + +G ++PL+ +D G + NA+++V+Y L G PAN
Sbjct: 174 SRHLDFISLLTYDFHGG--WRGTVGHHSPLFRGNSD-GSSRFSNADYAVSYMLRLGAPAN 230
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGN----QGFVDYIDTVAFLRDPDTIQI 350
KL++G+PT+G SYTL + TD G P + G G +G + Y + FL T +
Sbjct: 231 KLVMGIPTFGRSYTLAS-SKTDVGAPISGPGIPGQFTKEKGTLAYYEICDFLHGATTHRF 289
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY--HTSP 408
D+ VPYA +G+QW+++D++ S+ K YL ++ LAGAMVW L+ DD+ +
Sbjct: 290 RDQQ--VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLT 347
Query: 409 YPLIKRIKTVL 419
+PL IK VL
Sbjct: 348 FPLTSAIKDVL 358
>pdb|1TFV|A Chain A, Crystal Structure Of A Buffalo Signaling Glycoprotein
(Spb-40) Secreted During Involution
pdb|2O9O|A Chain A, Crystal Structure Of The Buffalo Secretory Signalling
Glycoprotein At 2.8 A Resolution
pdb|2QF8|A Chain A, Crystal Structure Of The Complex Of Buffalo Secretory
Glycoprotein With Tetrasaccharide At 2.8a Resolution
Length = 361
Score = 214 bits (545), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 133/371 (35%), Positives = 204/371 (54%), Gaps = 32/371 (8%)
Query: 68 YQLFCYY-SLPQNSSG---LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CYY S Q G P ++P LCTH++ +FA +S NN + E + V Y +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANIS-NNEIDTWEWNDVTLYDTL 59
Query: 124 VAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K NPNLK L+SV + G+ F+K S +R F +S+ FL H DG+DL W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNYGSQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTL-------SGRFLMTVAVAAPGPIIDRAYDVPLM 234
+PGW +KR + L++++K + + L++ AV A IDR YD+ +
Sbjct: 120 WPGW------RDKRHLTTLVKEMKAEFVREAQAGTEQLLLSAAVTAGKIAIDRGYDIAQI 173
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
R +DF+S++ YD+H + +G ++PL+ D S NA+++V+Y L G PAN
Sbjct: 174 SRHLDFISLLTYDFHGA--WRQTVGHHSPLFRGNEDASSRFS-NADYAVSYMLRLGAPAN 230
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGN----QGFVDYIDTVAFLRDPDTIQI 350
KL++G+PT+G SYTL + TD G P + G G +G + Y + FL T +
Sbjct: 231 KLVMGIPTFGRSYTLAS-SKTDVGAPISGPGIPGRFTKWKGILAYYEICDFLHGATTHRF 289
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY--HTSP 408
D+ VPYA +G+QW+++D++ S+ K YL ++ LAGAMVW L+ DD+ +
Sbjct: 290 RDQQ--VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLT 347
Query: 409 YPLIKRIKTVL 419
+PL IK VL
Sbjct: 348 FPLTSAIKDVL 358
>pdb|1XHG|A Chain A, Crystal Structure Of A 40 Kda Signalling Protein From
Porcine (spp-40) At 2.89a Resolution
pdb|1XRV|A Chain A, Crystal Structure Of The Novel Secretory Signalling
Protein From Porcine (Spp-40) At 2.1a Resolution.
pdb|1ZBC|A Chain A, Crystal Structure Of The Porcine Signalling Protein
Liganded With The Peptide Trp-Pro-Trp (Wpw) At 2.3 A
Resolution
pdb|1ZB5|A Chain A, Recognition Of Peptide Ligands By Signalling Protein From
Porcine Mammary Gland (Spp-40): Crystal Structure Of The
Complex Of Spp-40 With A Peptide Trp-Pro-Trp At 2.45a
Resolution
Length = 361
Score = 209 bits (533), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 204/371 (54%), Gaps = 32/371 (8%)
Query: 68 YQLFCYY-SLPQNSSG---LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CYY S Q G P ++P LCTH++ +FA +S NN + E + V Y +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANIS-NNEIDTWEWNDVTLYDTL 59
Query: 124 VAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K NPNLK L+SV + G F+K S +R F +S+ FL H DG+DL W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGPQRFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTL-------SGRFLMTVAVAAPGPIIDRAYDVPLM 234
+PG +KR + L++++K + + L++ AV+A IDR YD+ +
Sbjct: 120 YPG------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
R +DF+S++ YD+H + +G ++PL+ D S NA+++V+Y L G PAN
Sbjct: 174 SRHLDFISLLTYDFHGA--WRQTVGHHSPLFRGQEDASSRFS-NADYAVSYMLRLGAPAN 230
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGN----QGFVDYIDTVAFLRDPDTIQI 350
KL++G+PT+G S+TL + TD G P + G G +G + Y + FL+ T +
Sbjct: 231 KLVMGIPTFGKSFTLAS-SKTDVGAPVSGPGIPGQFTKEKGILAYYEICDFLQGATTHRF 289
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY--HTSP 408
D+ VPYA +G+QW+++D++ S+ K YL ++ LAGAMVW L+ DD+ +
Sbjct: 290 RDQQ--VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLT 347
Query: 409 YPLIKRIKTVL 419
+PL +K VL
Sbjct: 348 FPLTSAVKDVL 358
>pdb|1ZBV|A Chain A, Crystal Structure Of The Goat Signalling Protein (Spg-40)
Complexed With A Designed Peptide Trp-Pro-Trp At 3.2a
Resolution
pdb|1ZBW|A Chain A, Crystal Structure Of The Complex Formed Between Signalling
Protein From Goat Mammary Gland (Spg-40) And A
Tripeptide Trp-Pro-Trp At 2.8a Resolution
pdb|1ZU8|A Chain A, Crystal Structure Of The Goat Signalling Protein With A
Bound Trisaccharide Reveals That Trp78 Reduces The
Carbohydrate Binding Site To Half
pdb|2AOS|A Chain A, Protein-protein Interactions Of Protective Signalling
Factor: Crystal Structure Of Ternary Complex Involving
Signalling Protein From Goat (spg-40), Tetrasaccharide
And A Tripeptide Trp-pro-trp At 2.9 A Resolution
pdb|2B31|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 3.1 A
Resolution Reveals Large Scale Conformational Changes In
The Residues Of Tim Barrel
pdb|2DSZ|A Chain A, Three Dimensional Structure Of A Goat Signalling Protein
Secreted During Involution
pdb|2DT0|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With The Trimer Of N-acetylglucosamine At 2.45a
Resolution
pdb|2DT1|A Chain A, Crystal Structure Of The Complex Of Goat Signalling
Protein With Tetrasaccharide At 2.09 A Resolution
pdb|2DT2|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein With Pentasaccharide At 2.9a
Resolution
pdb|2DT3|A Chain A, Crystal Structure Of The Complex Formed Between Goat
Signalling Protein And The Hexasaccharide At 2.28 A
Resolution
pdb|2O92|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Tetrasaccharide At 3.0a Resolution
pdb|2OLH|A Chain A, Crystal Structure Of A Signalling Protein (Spg-40) Complex
With Cellobiose At 2.78 A Resolution
Length = 361
Score = 208 bits (530), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 203/371 (54%), Gaps = 32/371 (8%)
Query: 68 YQLFCYY-SLPQNSSG---LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CYY S Q G P ++P LCTH++ +FA +S NN + E + V Y +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANIS-NNEIDTWEWNDVTLYDTL 59
Query: 124 VAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K NP LK L+SV + G F+K S +R F +S+ FL H DG+DL W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTLS-------GRFLMTVAVAAPGPIIDRAYDVPLM 234
+PG +KR + L++++K + R L++ AV+A IDR YD+ +
Sbjct: 120 YPG------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
R +DF+S++ YD+H + +G ++PL+ +D S NA+++V+Y L G PAN
Sbjct: 174 SRHLDFISLLTYDFHGA--WRQTVGHHSPLFRGNSDASSRFS-NADYAVSYMLRLGAPAN 230
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL++G+PT+G S+TL + TD G P + G G +G + Y + FL T +
Sbjct: 231 KLVMGIPTFGRSFTLAS-SKTDVGAPISGPGIPGRFTKEKGILAYYEICDFLHGATTHRF 289
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY--HTSP 408
D+ VPYA +G+QW+++D++ S+ K YL ++ LAGAMVW L+ DD+ +
Sbjct: 290 RDQQ--VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLT 347
Query: 409 YPLIKRIKTVL 419
+PL +K VL
Sbjct: 348 FPLTSAVKDVL 358
>pdb|1LJY|A Chain A, Crystal Structure Of A Novel Regulatory 40 Kda Mammary
Gland Protein (Mgp-40) Secreted During Involution
Length = 361
Score = 208 bits (529), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 129/373 (34%), Positives = 204/373 (54%), Gaps = 32/373 (8%)
Query: 68 YQLFCYY-SLPQNSSG---LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CYY S Q G P ++P LCTH++ +FA +S NN + E + V Y +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANIS-NNEIDTWEWNDVTLYDTL 59
Query: 124 VAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K NP LK L+SV + G F+ S +R F +S+ FL H DG+DL W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTLS-------GRFLMTVAVAAPGPIIDRAYDVPLM 234
+PG +KR + L++++K + R L++ AV+A IDR YD+ +
Sbjct: 120 YPG------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
R +DF+S++ YD+H + +G ++PL+ +D G + NA+++V+Y L G PAN
Sbjct: 174 SRHLDFISLLTYDFHGA--WRQTVGHHSPLFRGNSD-GSSRFSNADYAVSYMLRLGAPAN 230
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL++G+PT+G S+TL + TD G P + G G +G + Y + FL T +
Sbjct: 231 KLVMGIPTFGRSFTLAS-SKTDGGAPISGPGIPGRFTKEKGILAYYEICDFLHGATTHRF 289
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY--HTSP 408
D+ VPYA +G+QW+++D++ S+ K YL ++ LAGAMVW L+ DD+ +
Sbjct: 290 RDQQ--VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLT 347
Query: 409 YPLIKRIKTVLTD 421
+PL +K VL +
Sbjct: 348 FPLTSAVKDVLAE 360
>pdb|1SYT|A Chain A, Crystal Structure Of Signalling Protein From Goat Spg-40
In The Presense Of N,n',n''-triacetyl-chitotriose At
2.6a Resolution
Length = 361
Score = 208 bits (529), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 130/371 (35%), Positives = 203/371 (54%), Gaps = 32/371 (8%)
Query: 68 YQLFCYY-SLPQNSSG---LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CYY S Q G P ++P LCTH++ +FA +S NN + E + V Y +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANIS-NNEIDTWEWNDVTLYDTL 59
Query: 124 VAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K NP LK L+SV + G F+K S +R F +S+ FL H DG+DL W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTLS-------GRFLMTVAVAAPGPIIDRAYDVPLM 234
+PG +KR + L++++K + R L++ AV+A IDR YD+ +
Sbjct: 120 YPG------RRDKRHLTALVKEMKAEFAREAQAGTERLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
R +DF+S++ YD+H + +G ++PL+ +D S NA+++V+Y L G PAN
Sbjct: 174 SRHLDFISLLTYDFHGA--WRQTVGHHSPLFRGNSDASSRFS-NADYAVSYMLRLGAPAN 230
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL++G+PT+G S+TL + TD G P + G G +G + Y + FL T +
Sbjct: 231 KLVMGIPTFGRSFTLAS-SKTDGGAPISGPGIPGRFTKEKGILAYYEICDFLHGATTHRF 289
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY--HTSP 408
D+ VPYA +G+QW+++D++ S+ K YL ++ LAGAMVW L+ DD+ +
Sbjct: 290 RDQQ--VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLT 347
Query: 409 YPLIKRIKTVL 419
+PL +K VL
Sbjct: 348 FPLTSAVKDVL 358
>pdb|2PI6|A Chain A, Crystal Structure Of The Sheep Signalling Glycoprotein
(Sps-40) Complex With 2-Methyl-2-4-Pentanediol At 1.65a
Resolution Reveals Specific Binding Characteristics Of
Sps-40
Length = 361
Score = 206 bits (525), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/373 (34%), Positives = 202/373 (54%), Gaps = 32/373 (8%)
Query: 68 YQLFCYY-SLPQNSSG---LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CYY S Q G P ++P LCTH++ FA +S NN + E + V Y +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANIS-NNEIDTWEWNDVTLYDTL 59
Query: 124 VAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K NP LK L+SV + G F+K S +R F +S+ FL H DG+DL W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTL-------SGRFLMTVAVAAPGPIIDRAYDVPLM 234
+PG +KR + L++++K + + L++ AV+A IDR YD+ +
Sbjct: 120 YPG------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
R +DF+S++ YD+H + +G ++PL+ D S NA+++V+Y L G PAN
Sbjct: 174 SRHLDFISLLTYDFHGA--WRQTVGHHSPLFRGNEDASSRFS-NADYAVSYMLRLGAPAN 230
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL++G+PT+G S+TL + TD G P + G G +G + Y + FL T +
Sbjct: 231 KLVMGIPTFGRSFTLAS-SKTDVGAPVSGPGIPGRFTKEKGILAYYEICDFLHGATTHRF 289
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY--HTSP 408
D+ VPYA +G+QW+++D++ S+ K YL ++ LAGAMVW L+ DD+ +
Sbjct: 290 RDQQ--VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLT 347
Query: 409 YPLIKRIKTVLTD 421
+PL +K VL +
Sbjct: 348 FPLTSAVKDVLAE 360
>pdb|1SR0|A Chain A, Crystal Structure Of Signalling Protein From Sheep(Sps-40)
At 3.0a Resolution Using Crystal Grown In The Presence
Of Polysaccharides
pdb|1ZBK|A Chain A, Recognition Of Specific Peptide Sequences By Signalling
Protein From Sheep Mammary Gland (Sps-40): Crystal
Structure Of The Complex Of Sps-40 With A Peptide
Trp-Pro-Trp At 2.9a Resolution
pdb|1ZL1|A Chain A, Crystal Structure Of The Complex Of Signalling Protein
From Sheep (Sps-40) With A Designed Peptide Trp-His-Trp
Reveals Significance Of Asn79 And Trp191 In The Complex
Formation
pdb|2FDM|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Glycoprotein Frm Sheep (Sps-40)with Hexasaccharide
(Nag6) And Peptide Trp-Pro-Trp At 3.0a Resolution
pdb|2G41|A Chain A, Crystal Structure Of The Complex Of Sheep Signalling
Glycoprotein With Chitin Trimer At 3.0a Resolution
pdb|2G8Z|A Chain A, Crystal Structure Of The Ternary Complex Of Signalling
Protein From Sheep (Sps-40) With Trimer And Designed
Peptide At 2.5a Resolution
pdb|2DPE|A Chain A, Crystal Structure Of A Secretory 40kda Glycoprotein From
Sheep At 2.0a Resolution
pdb|2DSU|A Chain A, Binding Of Chitin-Like Polysaccharide To Protective
Signalling Factor: Crystal Structure Of The Complex
Formed Between Signalling Protein From Sheep (Sps-40)
With A Tetrasaccharide At 2.2 A Resolution
pdb|2DSV|A Chain A, Interactions Of Protective Signalling Factor With
Chitin-like Polysaccharide: Crystal Structure Of The
Complex Between Signalling Protein From Sheep (sps-40)
And A Hexasaccharide At 2.5a Resolution
pdb|2DSW|A Chain A, Binding Of Chitin-Like Polysaccharides To Protective
Signalling Factor: Crystal Structure Of The Complex Of
Signalling Protein From Sheep (Sps-40) With A
Pentasaccharide At 2.8 A Resolution
Length = 361
Score = 205 bits (522), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 128/373 (34%), Positives = 202/373 (54%), Gaps = 32/373 (8%)
Query: 68 YQLFCYY-SLPQNSSG---LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CYY S Q G P ++P LCTH++ +FA +S NN + E + V Y +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYSFANIS-NNEIDTWEWNDVTLYDTL 59
Query: 124 VAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K NP LK L+SV + G F+ S +R F +S+ FL H DG+DL W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSAIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTL-------SGRFLMTVAVAAPGPIIDRAYDVPLM 234
+PG +KR + L++++K + + L++ AV+A IDR YD+ +
Sbjct: 120 YPG------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
R +DF+S++ YD+H + +G ++PL+ D S NA+++V+Y L G PAN
Sbjct: 174 SRHLDFISLLTYDFHGA--WRQTVGHHSPLFAGNEDASSRFS-NADYAVSYMLRLGAPAN 230
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL++G+PT+G S+TL + TD G P + G G +G + Y + FL T +
Sbjct: 231 KLVMGIPTFGRSFTLAS-SKTDVGAPVSGPGVPGRFTKEKGILAYYEICDFLHGATTHRF 289
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY--HTSP 408
D+ VPYA +G+QW+++D++ S+ K YL ++ LAGAMVW L+ DD+ +
Sbjct: 290 RDQQ--VPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLT 347
Query: 409 YPLIKRIKTVLTD 421
+PL +K VL +
Sbjct: 348 FPLTSAVKDVLAE 360
>pdb|1HJV|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|C Chain C, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJV|D Chain D, Crystal Structure Of Hcgp-39 In Complex With Chitin
Tetramer
pdb|1HJW|A Chain A, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJW|B Chain B, Crystal Structure Of Hcgp-39 In Complex With Chitin
Octamer
pdb|1HJX|A Chain A, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|B Chain B, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|C Chain C, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1HJX|D Chain D, Ligand-Induced Signalling And Conformational Change Of The
39 Kd Glycoprotein From Human Articular Chondrocytes
pdb|1NWR|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWR|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39)
pdb|1NWS|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWS|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitobiose
pdb|1NWT|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWT|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitopentaose
pdb|1NWU|A Chain A, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|B Chain B, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|C Chain C, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
pdb|1NWU|D Chain D, Crystal Structure Of Human Cartilage Gp39 (Hc-Gp39) In
Complex With Chitotetraose
Length = 362
Score = 195 bits (496), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 125/371 (33%), Positives = 197/371 (53%), Gaps = 31/371 (8%)
Query: 68 YQLFCYY-SLPQNSSG---LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CYY S Q G P L+ LCTHI+ +FA +S N+ + E + V Y +
Sbjct: 1 YKLVCYYTSWSQYREGDGSCFPDALDRFLCTHIIYSFANIS-NDHIDTWEWNDVTLYGML 59
Query: 124 VAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K NPNLK L+SV + G+ F+K S +R F +S+ FL H DG+DL W
Sbjct: 60 NTLKNRNPNLKTLLSVGGWNFGSQRFSKIASNTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTL-------SGRFLMTVAVAAPGPIIDRAYDVPLM 234
+PG +K+ F+ L++++K + L++ A++A ID +YD+ +
Sbjct: 120 YPG------RRDKQHFTTLIKEMKAEFIKEAQPGKKQLLLSAALSAGKVTIDSSYDIAKI 173
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
+ +DF+SIM YD+H + G ++PL+ D + N +++V Y L G PA+
Sbjct: 174 SQHLDFISIMTYDFHGA--WRGTTGHHSPLFRGQEDASPDRFSNTDYAVGYMLRLGAPAS 231
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL++G+PT+G S+TL + + T G P + G G G + Y + FLR +I
Sbjct: 232 KLVMGIPTFGRSFTLASSE-TGVGAPISGPGIPGRFTKEAGTLAYYEICDFLRGATVHRI 290
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKYHTS--P 408
+ VPYA +G+QW+ +D++ S+ K +YL + LAGAMVW L+ DD+ +
Sbjct: 291 LGQQ--VPYATKGNQWVGYDDQESVKSKVQYLKDRQLAGAMVWALDLDDFQGSFCGQDLR 348
Query: 409 YPLIKRIKTVL 419
+PL IK L
Sbjct: 349 FPLTNAIKDAL 359
>pdb|1E9L|A Chain A, The Crystal Structure Of Novel Mammalian Lectin Ym1
Suggests A Saccharide Binding Site
pdb|1VF8|A Chain A, The Crystal Structure Of Ym1 At 1.31 A Resolution
Length = 377
Score = 194 bits (493), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 118/375 (31%), Positives = 193/375 (51%), Gaps = 32/375 (8%)
Query: 68 YQLFCYYS-----LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRD 122
YQL CYY+ P S P ++P LCTH++ AFA + +NN + + ++ Y
Sbjct: 1 YQLMCYYTSWAKDRPIEGS-FKPGNIDPCLCTHLIYAFAGM-QNNEITYTHEQDLRDYEA 58
Query: 123 VVAMKLLNPNLKVLISVT--DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDW 180
+ +K N LK L+++ G F+ VST NR F +S++ FL ++N DG++LDW
Sbjct: 59 LNGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDW 118
Query: 181 EFPGWPGPNKSHEKRMFSKLLQQLKFTLSG--------RFLMTVAVAAPGPIIDRAYDVP 232
++PG G + +K +FS L+++++ R L+T A +I Y +P
Sbjct: 119 QYPGSRG-SPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIP 177
Query: 233 LMGRLVDFVSIMGYDYHSYIWYLP---VLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYK 289
+ + +D++ +M YD H P G N+PLY + D G LN + ++Y+
Sbjct: 178 ELSQSLDYIQVMTYDLHD-----PKDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDH 232
Query: 290 GIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDP 345
G + KL++G P YGH++ L +P T G P G G G + Y + FL +
Sbjct: 233 GAASEKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEG 292
Query: 346 DTIQIFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY- 404
T +++D VPYAY+G++W+ +DN S K ++L L GA+VW L+ DD++ +
Sbjct: 293 AT-EVWDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFC 351
Query: 405 HTSPYPLIKRIKTVL 419
H +PL +K L
Sbjct: 352 HQRHFPLTSTLKGDL 366
>pdb|1ITX|A Chain A, Catalytic Domain Of Chitinase A1 From Bacillus Circulans
Wl-12
Length = 419
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 91/294 (30%), Positives = 145/294 (49%), Gaps = 24/294 (8%)
Query: 126 MKLLNPNLKVLISVTDAGTGN-FAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP- 183
+K NPNLK +ISV N F+ +T A R F+ S ++FL ++N DG+DLDWE+P
Sbjct: 116 LKQTNPNLKTIISVGGWTWSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPV 175
Query: 184 --GWPGPNKSHE-KRMFSKLLQQLKFTLSG-------RFLMTVAVAAPGPIIDRAYDVPL 233
G G +K E K+ ++ LL +++ L ++L+T+A A ++
Sbjct: 176 SGGLDGNSKRPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGASATYAANT-ELAK 234
Query: 234 MGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLY--PAVTDQGY--FKSLNANWSVNYYLYK 289
+ +VD+++IM YD++ + + NAPL PA + G + N +L
Sbjct: 235 IAAIVDWINIMTYDFNGA--WQKISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDA 292
Query: 290 GIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG--NQGFVDYIDTVA-FLRDPD 346
G+PA KL+LG+P YG + +G G D+ D A ++
Sbjct: 293 GVPAAKLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVGTWEAGSFDFYDLEANYINKNG 352
Query: 347 TIQIFDKNTSVPYAYRGD--QWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
+ ++ VPY Y ++IS+D+ S+ YKT Y+ SKGL GAM W L+ D
Sbjct: 353 YTRYWNDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGD 406
>pdb|3AQU|A Chain A, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|B Chain B, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|C Chain C, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
pdb|3AQU|D Chain D, Crystal Structure Of A Class V Chitinase From Arabidopsis
Thaliana
Length = 356
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 86/323 (26%), Positives = 142/323 (43%), Gaps = 23/323 (7%)
Query: 88 LNPNLCTHILLAFAQV-SKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTD--AGT 144
++ +L TH+ AFA + S+ N V + K+ ++ NP++K L+S+ A
Sbjct: 21 IDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQTVQRRNPSVKTLLSIGGGIADK 80
Query: 145 GNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQL 204
+A S +R +F +S + + G+DLDWE+P + + E F LL++
Sbjct: 81 TAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP-----SSATEMTNFGTLLREW 135
Query: 205 KFTL------SG--RFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLP 256
+ + SG R L+ AV Y V + +D+V++M YD++ W
Sbjct: 136 RSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVASSLDWVNLMAYDFYGPGWSR- 194
Query: 257 VLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTD 316
V GP A L+ + +W + G+PA K +LG P YG+++ L N +S
Sbjct: 195 VTGPPAALFDPSNAGPSGDAGTRSW-----IQAGLPAKKAVLGFPYYGYAWRLTNANSHS 249
Query: 317 YGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQWISFDNEPSLA 376
Y P I G + Y F+ D +++ Y Y G WI +D+ S+
Sbjct: 250 YYAPTTGAA-ISPDGSIGYGQIRKFIVDNGATTVYNSTVVGDYCYAGTNWIGYDDNQSIV 308
Query: 377 YKTEYLMSKGLAGAMVWCLNTDD 399
K Y +GL G W + DD
Sbjct: 309 TKVRYAKQRGLLGYFSWHVGADD 331
>pdb|3ALF|A Chain A, Crystal Structure Of Class V Chitinase From Nicotiana
Tobaccum
Length = 353
Score = 112 bits (281), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 81/331 (24%), Positives = 151/331 (45%), Gaps = 24/331 (7%)
Query: 81 SGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVA-MKLLNPNLKVLISV 139
SGL + ++ L TH+ AFA ++ + P++ +R + ++ NP++K +S+
Sbjct: 13 SGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKNPSVKTFLSI 72
Query: 140 TDAGTGNFAKAVSTRA--NRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMF 197
+ A + R +R +F +S + + G+DLDWE+P + +
Sbjct: 73 AGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYP-----LSAADMTNL 127
Query: 198 SKLLQQLKFTL------SGR--FLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYH 249
LL + + + SGR L+T AV+ + Y V + R +D++++M YD++
Sbjct: 128 GTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYDFY 187
Query: 250 SYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTL 309
W +A L+ V +NA ++ G+P KL+LG+P YG+++ L
Sbjct: 188 GPNWSPSQTNSHAQLFDPVNHVSGSDGINA------WIQAGVPTKKLVLGIPFYGYAWRL 241
Query: 310 VNPDSTDYGMPAADVGRIG--NQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQWI 367
VN + PAA +G + G + Y ++ + +++ Y Y G WI
Sbjct: 242 VNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYSGSNWI 301
Query: 368 SFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
S+D+ ++ K Y+ +GL G W + D
Sbjct: 302 SYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
>pdb|3ALG|A Chain A, Crystal Structure Of Class V Chitinase (E115q Mutant) From
Nicotiana Tobaccum In Complex With Nag4
Length = 353
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 80/331 (24%), Positives = 151/331 (45%), Gaps = 24/331 (7%)
Query: 81 SGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVA-MKLLNPNLKVLISV 139
SGL + ++ L TH+ AFA ++ + P++ +R + ++ NP++K +S+
Sbjct: 13 SGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKNPSVKTFLSI 72
Query: 140 TDAGTGNFAKAVSTRA--NRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMF 197
+ A + R +R +F +S + + G+DLDW++P + +
Sbjct: 73 AGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWQYP-----LSAADMTNL 127
Query: 198 SKLLQQLKFTL------SGR--FLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYH 249
LL + + + SGR L+T AV+ + Y V + R +D++++M YD++
Sbjct: 128 GTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYDFY 187
Query: 250 SYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTL 309
W +A L+ V +NA ++ G+P KL+LG+P YG+++ L
Sbjct: 188 GPNWSPSQTNSHAQLFDPVNHVSGSDGINA------WIQAGVPTKKLVLGIPFYGYAWRL 241
Query: 310 VNPDSTDYGMPAADVGRIG--NQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQWI 367
VN + PAA +G + G + Y ++ + +++ Y Y G WI
Sbjct: 242 VNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYSGSNWI 301
Query: 368 SFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
S+D+ ++ K Y+ +GL G W + D
Sbjct: 302 SYDDTQTVRNKVNYVKGRGLLGYFAWHVAGD 332
>pdb|1KFW|A Chain A, Structure Of Catalytic Domain Of Psychrophilic Chitinase B
From Arthrobacter Tad20
Length = 435
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 144/318 (45%), Gaps = 53/318 (16%)
Query: 120 YRDVVAMKLLNPNLKVLISVTD-AGTGNFAKAVSTRANRLAFSESILEFLIEHNL----- 173
+ + +K NP LKV+IS+ + NF+KA +T A+R S ++ I+ NL
Sbjct: 105 FNQLKQLKAKNPKLKVMISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEG 164
Query: 174 -----------DGIDLDWEFPGWPGPNKS---------HEKRMFSKLLQQLKFTLSG--- 210
DGID+DWE WPG N +++ F LL + + L
Sbjct: 165 RGGAGAAAGIFDGIDIDWE---WPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGS 221
Query: 211 ----RFLMTVAVAA-PGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLY 265
+++++ + A P I +D P + +DF SI GYD H W + G A LY
Sbjct: 222 TNNKKYVLSAFLPANPADIDAGGWDDPANFKSLDFGSIQGYDLHG-AWNPTLTGHQANLY 280
Query: 266 PAVTD-QGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADV 324
D + K +A+ +V YL GI +L LGL YG +T + + +G PA D
Sbjct: 281 DDPADPRAPSKKFSADKAVKKYLAAGIDPKQLGLGLAAYGRGWTGAK-NVSPWG-PATDG 338
Query: 325 G----RIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQWISFDNEPSLAYKTE 380
N+ + D + T+ +D T + Y G QW S+DN + KT+
Sbjct: 339 APGTYETANEDY-DKLKTLG-------TDHYDAATGSAWRYDGTQWWSYDNIATTKQKTD 390
Query: 381 YLMSKGLAGAMVWCLNTD 398
Y++SKGL G M W L+ D
Sbjct: 391 YIVSKGLGGGMWWELSGD 408
>pdb|1JND|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
pdb|1JNE|A Chain A, Crystal Structure Of Imaginal Disc Growth Factor-2
Length = 420
Score = 105 bits (261), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 104/426 (24%), Positives = 180/426 (42%), Gaps = 85/426 (19%)
Query: 70 LFCYYSLPQNSSGLLPHQLNPNL------CTHILLAFAQVSKNNTVAHLEPDHVKYYR-- 121
L CYY + L LNP+L C+H++ +A + N A+ +++ Y+
Sbjct: 4 LVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYKHQ 63
Query: 122 --DVVAMKLLNPNLKVLISVT-------DAGTGNFAKAVSTRANRLAFSESILEFLIEHN 172
+V ++K P+LKVL+SV D + ++ F S E + +
Sbjct: 64 FSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKTYG 123
Query: 173 LDGIDLDWEFP-------------GWPG------------PNKSHEKRMFSKLLQQLKFT 207
DG+DL ++FP W P+ + K F+ L++ +K +
Sbjct: 124 FDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVKDS 183
Query: 208 LSGR-FLMTVAVAAPGPIIDRA--YDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGP---- 260
L FL+++ V P ++ +D+P + LVDFV++ +D+ + P P
Sbjct: 184 LRADGFLLSLTVL---PNVNSTWYFDIPALNGLVDFVNLATFDFLT-----PARNPEEAD 235
Query: 261 -NAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVN-------P 312
+AP+Y + LNA++ V Y+L +G P+NK+ LG+ TYG+++ L P
Sbjct: 236 YSAPIYHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVP 295
Query: 313 DSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTS------------VPYA 360
+ PA + + G + Y + L +P Q N S A
Sbjct: 296 VVPETSGPAPEGFQSQKPGLLSYAEICGKLSNPQN-QFLKGNESPLRRVSDPTKRFGGIA 354
Query: 361 YR-------GDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKYHTSPYPLIK 413
YR W+S+D+ S + K Y K L G ++ L+ DD+ + YP+++
Sbjct: 355 YRPVDGQITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILR 414
Query: 414 RIKTVL 419
IK L
Sbjct: 415 AIKYRL 420
>pdb|3G6L|A Chain A, The Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea
pdb|3G6M|A Chain A, Crystal Structure Of A Chitinase Crchi1 From The
Nematophagous Fungus Clonostachys Rosea In Complex With
A Potent Inhibitor Caffeine
Length = 406
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 88/340 (25%), Positives = 151/340 (44%), Gaps = 38/340 (11%)
Query: 85 PHQLNPNLCTHILLAFAQVSKNNTV--AHLEPDHVKYYRD----------------VVAM 126
P L + H+L +F + + TV D K+Y D + +
Sbjct: 39 PADLQASKILHVLYSFMNLRVDGTVYSGDTYADLEKHYSDDSWNDIGTNAYGCVKQLYKL 98
Query: 127 KLLNPNLKVLISVTD-AGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGW 185
K N +LK+++S+ + NF A ST A R F+++ +EF+ + DGID+DWE+P
Sbjct: 99 KKANRSLKIMLSIGGWTWSTNFPAAASTEATRATFAKTAVEFMKDWGFDGIDVDWEYPA- 157
Query: 186 PGPNKSHEKRMFSKLLQQL---KFTLSGRFLMTVAVAAP-GPIIDRAYDVPLMGRLVDFV 241
+ ++ + ++ Q+L T + + +++AAP GP + +G ++D +
Sbjct: 158 SETDANNMVLLLQRVRQELDSYSATYANGYHFQLSIAAPAGPSHYNVLKLAQLGSVLDNI 217
Query: 242 SIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLP 301
++M YDY + V G LYP+ ++ + +V+ Y+ G+PA+K++LG+P
Sbjct: 218 NLMAYDYAGS--WDSVSGHQTNLYPSTSNPSS-TPFSTKAAVDAYIAAGVPASKIILGMP 274
Query: 302 TYGHSYTLVNPDSTDYGMPAADVGRIG-NQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYA 360
YG ++ V D G P + +G G DY L I D Y+
Sbjct: 275 IYGRAF--VGTDGP--GKPYSTIGEGSWESGIWDY----KVLPKAGATVITDSAAGATYS 326
Query: 361 YRGDQ--WISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
Y IS+D + K Y GL G+M W + D
Sbjct: 327 YDSSSRTMISYDTPDMVRTKVSYAKGLGLGGSMFWEASAD 366
>pdb|1WNO|A Chain A, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
pdb|1WNO|B Chain B, Crystal Structure Of A Native Chitinase From Aspergillus
Fumigatus Yj- 407
Length = 395
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 152/345 (44%), Gaps = 47/345 (13%)
Query: 85 PHQLNPNLCTHILLAFAQVSKNNTVAHLE---PDHVKYY----------------RDVVA 125
P L TH+L AFA V ++ D K+Y + +
Sbjct: 23 PQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYL 82
Query: 126 MKLLNPNLKVLISVTDAG-TGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPG 184
+K N NLKVL+S+ + NFA A ST A R F+++ ++ L + DG+D+DWE+
Sbjct: 83 LKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEY-- 140
Query: 185 WPGPNKSHEKRMFSKLLQQLKFTLSG---------RFLMTVAVAAPGPIIDRAYDVPLMG 235
P + F LL++++ L FL+TVA A GP + + M
Sbjct: 141 ---PENDQQANDFVLLLREVRTALDSYSAANAGGQHFLLTVASPA-GPDKIKVLHLKDMD 196
Query: 236 RLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANK 295
+ +DF ++M YDY + + G A +Y ++ N +++ Y G+PANK
Sbjct: 197 QQLDFWNLMAYDYAGS--FSSLSGHQANVYNDTSNP-LSTPFNTQTALDLYRAGGVPANK 253
Query: 296 LLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG-NQGFVDYIDTVAFLRDPDTIQIF-DK 353
++LG+P YG S+ N D G P VG+ G DY A + T + D
Sbjct: 254 IVLGMPLYGRSF--ANTDGP--GKPYNGVGQGSWENGVWDY---KALPQAGATEHVLPDI 306
Query: 354 NTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
S Y IS+DN K+ Y+ S GL GAM W ++D
Sbjct: 307 MASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 351
>pdb|1W9P|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9P|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Inhibitors Against Aspergillus
Fumigatus, Human And Bacterial Chitinasefra
pdb|1W9U|A Chain A, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9U|B Chain B, Specificity And Affnity Of Natural Product
Cyclopentapeptide Inhibitor Argadin Against Aspergillus
Fumigatus Chitinase
pdb|1W9V|A Chain A, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|1W9V|B Chain B, Specificity And Affinity Of Natural Product
Cyclopentapeptide Argifin Against Aspergillus Fumigatus
pdb|2A3A|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3A|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Theophylline
pdb|2A3B|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3B|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Caffeine
pdb|2A3C|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3C|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Pentoxifylline
pdb|2A3E|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2A3E|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Allosamidin
pdb|2IUZ|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|2IUZ|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With C2-Dicaffeine
pdb|3CH9|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CH9|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dimethylguanylurea
pdb|3CHC|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHC|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Monopeptide
pdb|3CHD|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHD|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Dipeptide
pdb|3CHE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tripeptide
pdb|3CHF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
pdb|3CHF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Chitinase B1 In
Complex With Tetrapeptide
Length = 433
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 100/345 (28%), Positives = 152/345 (44%), Gaps = 47/345 (13%)
Query: 85 PHQLNPNLCTHILLAFAQVSKNNTVAHLE---PDHVKYY----------------RDVVA 125
P L TH+L AFA V ++ D K+Y + +
Sbjct: 61 PQDLPVERLTHVLYAFANVRPETGEVYMTDSWADIEKHYPGDSWSDTGNNVYGCIKQLYL 120
Query: 126 MKLLNPNLKVLISVTDAG-TGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPG 184
+K N NLKVL+S+ + NFA A ST A R F+++ ++ L + DG+D+DWE+
Sbjct: 121 LKKQNRNLKVLLSIGGWTYSPNFAPAASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEY-- 178
Query: 185 WPGPNKSHEKRMFSKLLQQLKFTLSG---------RFLMTVAVAAPGPIIDRAYDVPLMG 235
P + F LL++++ L FL+TVA A GP + + M
Sbjct: 179 ---PENDQQANDFVLLLKEVRTALDSYSAANAGGQHFLLTVASPA-GPDKIKVLHLKDMD 234
Query: 236 RLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANK 295
+ +DF ++M YDY + + G A +Y ++ N +++ Y G+PANK
Sbjct: 235 QQLDFWNLMAYDYAGS--FSSLSGHQANVYNDTSNP-LSTPFNTQTALDLYRAGGVPANK 291
Query: 296 LLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG-NQGFVDYIDTVAFLRDPDTIQIF-DK 353
++LG+P YG S+ N D G P VG+ G DY A + T + D
Sbjct: 292 IVLGMPLYGRSF--ANTDGP--GKPYNGVGQGSWENGVWDY---KALPQAGATEHVLPDI 344
Query: 354 NTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
S Y IS+DN K+ Y+ S GL GAM W ++D
Sbjct: 345 MASYSYDATNKFLISYDNPQVANLKSGYIKSLGLGGAMWWDSSSD 389
>pdb|1D2K|A Chain A, C. Immitis Chitinase 1 At 2.2 Angstroms Resolution
pdb|1LL4|A Chain A, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|B Chain B, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|C Chain C, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
pdb|1LL4|D Chain D, Structure Of C. Immitis Chitinase 1 Complexed With
Allosamidin
Length = 392
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/345 (25%), Positives = 147/345 (42%), Gaps = 42/345 (12%)
Query: 82 GLLPHQLNPNLCTHILLAFAQVSKNNTV--AHLEPDHVKYY----------------RDV 123
G P L + THIL AFA + + V + D K+Y + +
Sbjct: 18 GHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQM 77
Query: 124 VAMKLLNPNLKVLISVTDAG-TGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182
+K N NLK L+S+ + NF ST R F+++ L+ + + DGID+DWE+
Sbjct: 78 YLLKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWEY 137
Query: 183 PGWPGPNKSHEKRMFSKLLQQLKFTLSG---------RFLMTVAVAAPGPIIDRAYDVPL 233
P + F LL+ + L +FL+T+A A GP +
Sbjct: 138 -----PEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPA-GPQNYNKLKLAE 191
Query: 234 MGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPA 293
M + +DF ++M YD+ + V G + ++P+ T + +++ +V Y+ G+PA
Sbjct: 192 MDKYLDFWNLMAYDFSGS--WDKVSGHMSNVFPSTT-KPESTPFSSDKAVKDYIKAGVPA 248
Query: 294 NKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDK 353
NK++LG+P YG ++ + T + G G DY D + ++ D
Sbjct: 249 NKIVLGMPLYGRAFASTDGIGTSFNGVG---GGSWENGVWDYKDMPQ--QGAQVTELEDI 303
Query: 354 NTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
S Y IS+D K EY+ G+ G M W ++D
Sbjct: 304 AASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1LL7|A Chain A, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
pdb|1LL7|B Chain B, Structure Of The E171q Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 147/345 (42%), Gaps = 42/345 (12%)
Query: 82 GLLPHQLNPNLCTHILLAFAQVSKNNTV--AHLEPDHVKYY----------------RDV 123
G P L + THIL AFA + + V + D K+Y + +
Sbjct: 18 GHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQM 77
Query: 124 VAMKLLNPNLKVLISVTDAG-TGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182
+K N NLK L+S+ + NF ST R F+++ L+ + + DGID+DW++
Sbjct: 78 YLLKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDIDWQY 137
Query: 183 PGWPGPNKSHEKRMFSKLLQQLKFTLSG---------RFLMTVAVAAPGPIIDRAYDVPL 233
P + F LL+ + L +FL+T+A A GP +
Sbjct: 138 -----PEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPA-GPQNYNKLKLAE 191
Query: 234 MGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPA 293
M + +DF ++M YD+ + V G + ++P+ T + +++ +V Y+ G+PA
Sbjct: 192 MDKYLDFWNLMAYDFSGS--WDKVSGHMSNVFPSTT-KPESTPFSSDKAVKDYIKAGVPA 248
Query: 294 NKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDK 353
NK++LG+P YG ++ + T + G G DY D + ++ D
Sbjct: 249 NKIVLGMPLYGRAFASTDGIGTSFNGVG---GGSWENGVWDYKDMPQ--QGAQVTELEDI 303
Query: 354 NTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
S Y IS+D K EY+ G+ G M W ++D
Sbjct: 304 AASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|1LL6|A Chain A, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|B Chain B, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|C Chain C, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
pdb|1LL6|D Chain D, Structure Of The D169n Mutant Of C. Immitis Chitinase 1
Length = 392
Score = 95.1 bits (235), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 88/345 (25%), Positives = 147/345 (42%), Gaps = 42/345 (12%)
Query: 82 GLLPHQLNPNLCTHILLAFAQVSKNNTV--AHLEPDHVKYY----------------RDV 123
G P L + THIL AFA + + V + D K+Y + +
Sbjct: 18 GHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDKWDEPGNNVYGCIKQM 77
Query: 124 VAMKLLNPNLKVLISVTDAG-TGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182
+K N NLK L+S+ + NF ST R F+++ L+ + + DGID++WE+
Sbjct: 78 YLLKKNNRNLKTLLSIGGWTYSPNFKTPASTEEGRKKFADTSLKLMKDLGFDGIDINWEY 137
Query: 183 PGWPGPNKSHEKRMFSKLLQQLKFTLSG---------RFLMTVAVAAPGPIIDRAYDVPL 233
P + F LL+ + L +FL+T+A A GP +
Sbjct: 138 -----PEDEKQANDFVLLLKACREALDAYSAKHPNGKKFLLTIASPA-GPQNYNKLKLAE 191
Query: 234 MGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPA 293
M + +DF ++M YD+ + V G + ++P+ T + +++ +V Y+ G+PA
Sbjct: 192 MDKYLDFWNLMAYDFSGS--WDKVSGHMSNVFPSTT-KPESTPFSSDKAVKDYIKAGVPA 248
Query: 294 NKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDK 353
NK++LG+P YG ++ + T + G G DY D + ++ D
Sbjct: 249 NKIVLGMPLYGRAFASTDGIGTSFNGVG---GGSWENGVWDYKDMPQ--QGAQVTELEDI 303
Query: 354 NTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
S Y IS+D K EY+ G+ G M W ++D
Sbjct: 304 AASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMWWESSSD 348
>pdb|3QOK|A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella
Pneumoniae
Length = 420
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 88/308 (28%), Positives = 145/308 (47%), Gaps = 36/308 (11%)
Query: 125 AMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP- 183
A++ NP+LKVL+SV G F+ A +T +R F S + + ++ LDGIDLDWEFP
Sbjct: 100 ALRKQNPDLKVLLSVGGWGARGFSGAAATAESRAVFIRSAQKIIQQYGLDGIDLDWEFPV 159
Query: 184 -GWPG--PNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDF 240
G G ++ ++ F+ LL+ L+ + + L+T+AV A DV + ++++
Sbjct: 160 NGAWGLVASQPADRDNFTALLKSLREAVGEQKLVTIAVGANAESPKSWVDVKAVAPVLNY 219
Query: 241 VSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGL 300
+++ YD Y ++ +P V + +A++ VN YL G+ ++ LG+
Sbjct: 220 INLXTYDXAYGTQYFNSNLYDSSHWPTVAAADKY---SADFVVNNYLAAGLKPSQXNLGI 276
Query: 301 PTYGH----------SYTLV----NPDSTDYGMPA-----ADVG-RIGNQGFVDYIDTVA 340
YG +T NP + Y P A +G + +V Y D V
Sbjct: 277 GFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQIALFASLGYDLSKDTYVKYNDIVG 336
Query: 341 -FLRDPDT--IQIFDKNTSVPY----AYRGDQW--ISFDNEPSLAYKTEYLMSKGLAGAM 391
L DP + +D VP+ + G +S++N S+A K +Y+ +KGLAGA
Sbjct: 337 KLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFALSYENPRSVAIKADYIKAKGLAGAX 396
Query: 392 VWCLNTDD 399
W DD
Sbjct: 397 FWEYGADD 404
>pdb|1H0G|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0G|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argadin From Clonostachys
pdb|1H0I|A Chain A, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
pdb|1H0I|B Chain B, Complex Of A Chitinase With The Natural Product
Cyclopentapeptide Argifin From Gliocladium
Length = 499
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 163/377 (43%), Gaps = 83/377 (22%)
Query: 94 THILLAFAQVSKNNTVAHLEPDHVKYYRDVV----AMKLLNPNLKVLISV------TDAG 143
THI +F ++ N A + RDVV A+K NP+L+++ S+ D G
Sbjct: 45 THINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLG 104
Query: 144 T--GNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLL 201
N+ AV T A+R F++S + + ++ DG+D+DWE+P ++ E F L
Sbjct: 105 VSHANYVNAVKTPASRTKFAQSCVRIMKDYGFDGVDIDWEYP------QAAEVDGFIAAL 158
Query: 202 QQLKFTLS------GR----FLMTVAVAAPGPIIDRAYDVPLMGRLV---DFVSIMGYDY 248
Q+++ L+ GR + +T+A A + R Y + ++V D++++M YD
Sbjct: 159 QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLDYINLMTYDL 216
Query: 249 HSYIWYLPVLGPNAPLYPAVTDQGYFKSL---NANWS--------------------VNY 285
+ V A L+ ++ +L N WS +
Sbjct: 217 AGP--WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQH 274
Query: 286 YLYKGIPANKLLLGLPTYGHSYTLVN------------PDSTDYGMPAADVGRIGNQGFV 333
+ +G+P+ K+++G+P YG ++ V+ P Y P+ D +G + V
Sbjct: 275 LMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPY--PSTDYWLVGCEECV 332
Query: 334 DYID-TVAFLRDPDTI--------QIFDKNTSVPYAYRGDQ--WISFDNEPSLAYKTEYL 382
D +A R + + ++++ T PY Y ++++D+ S YK +Y+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYI 392
Query: 383 MSKGLAGAMVWCLNTDD 399
+ L G M W L D+
Sbjct: 393 KQQQLGGVMFWHLGQDN 409
>pdb|1E15|A Chain A, Chitinase B From Serratia Marcescens
pdb|1E15|B Chain B, Chitinase B From Serratia Marcescens
pdb|1E6R|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1E6R|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Inhibitor Allosamidin
pdb|1GPF|A Chain A, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1GPF|B Chain B, Chitinase B From Serratia Marcescens In Complex With
Inhibitor Psammaplin
pdb|1UR8|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR8|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1W1P|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1P|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(Gly-L-Pro) At
2.1 A Resolution
pdb|1W1T|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1T|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(his-l-pro) At
1.9 A Resolution
pdb|1W1V|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1V|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(L-Arg-L-Pro)
At 1.85 A Resolution
pdb|1W1Y|A Chain A, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1W1Y|B Chain B, Crystal Structure Of S. Marcescens Chitinase B In Complex
With The Cyclic Dipeptide Inhibitor Cyclo-(l-tyr-l-pro)
At 1.85 A Resolution
pdb|1O6I|A Chain A, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4.
pdb|1O6I|B Chain B, Chitinase B From Serratia Marcescens Complexed With The
Catalytic Intermediate Mimic Cyclic Dipeptide Ci4
Length = 499
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 163/377 (43%), Gaps = 83/377 (22%)
Query: 94 THILLAFAQVSKNNTVAHLEPDHVKYYRDVV----AMKLLNPNLKVLISV------TDAG 143
THI +F ++ N A + RDVV A+K NP+L+++ S+ D G
Sbjct: 45 THINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLG 104
Query: 144 T--GNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLL 201
N+ AV T A+R F++S + + ++ DG+D+DWE+P ++ E F L
Sbjct: 105 VSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYP------QAAEVDGFIAAL 158
Query: 202 QQLKFTLS------GR----FLMTVAVAAPGPIIDRAYDVPLMGRLV---DFVSIMGYDY 248
Q+++ L+ GR + +T+A A + R Y + ++V D++++M YD
Sbjct: 159 QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLDYINLMTYDL 216
Query: 249 HSYIWYLPVLGPNAPLYPAVTDQGYFKSL---NANWS--------------------VNY 285
+ V A L+ ++ +L N WS +
Sbjct: 217 AGP--WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQH 274
Query: 286 YLYKGIPANKLLLGLPTYGHSYTLVN------------PDSTDYGMPAADVGRIGNQGFV 333
+ +G+P+ K+++G+P YG ++ V+ P Y P+ D +G + V
Sbjct: 275 LMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPY--PSTDYWLVGCEECV 332
Query: 334 DYID-TVAFLRDPDTI--------QIFDKNTSVPYAYRGDQ--WISFDNEPSLAYKTEYL 382
D +A R + + ++++ T PY Y ++++D+ S YK +Y+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYI 392
Query: 383 MSKGLAGAMVWCLNTDD 399
+ L G M W L D+
Sbjct: 393 KQQQLGGVMFWHLGQDN 409
>pdb|1E6Z|A Chain A, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
pdb|1E6Z|B Chain B, Chitinase B From Serratia Marcescens Wildtype In Complex
With Catalytic Intermediate
Length = 498
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 89/377 (23%), Positives = 163/377 (43%), Gaps = 83/377 (22%)
Query: 94 THILLAFAQVSKNNTVAHLEPDHVKYYRDVV----AMKLLNPNLKVLISV------TDAG 143
THI +F ++ N A + RDVV A+K NP+L+++ S+ D G
Sbjct: 44 THINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLG 103
Query: 144 T--GNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLL 201
N+ AV T A+R F++S + + ++ DG+D+DWE+P ++ E F L
Sbjct: 104 VSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWEYP------QAAEVDGFIAAL 157
Query: 202 QQLKFTLS------GR----FLMTVAVAAPGPIIDRAYDVPLMGRLV---DFVSIMGYDY 248
Q+++ L+ GR + +T+A A + R Y + ++V D++++M YD
Sbjct: 158 QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLDYINLMTYDL 215
Query: 249 HSYIWYLPVLGPNAPLYPAVTDQGYFKSL---NANWS--------------------VNY 285
+ V A L+ ++ +L N WS +
Sbjct: 216 AGP--WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQH 273
Query: 286 YLYKGIPANKLLLGLPTYGHSYTLVN------------PDSTDYGMPAADVGRIGNQGFV 333
+ +G+P+ K+++G+P YG ++ V+ P Y P+ D +G + V
Sbjct: 274 LMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPY--PSTDYWLVGCEECV 331
Query: 334 DYID-TVAFLRDPDTI--------QIFDKNTSVPYAYRGDQ--WISFDNEPSLAYKTEYL 382
D +A R + + ++++ T PY Y ++++D+ S YK +Y+
Sbjct: 332 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYI 391
Query: 383 MSKGLAGAMVWCLNTDD 399
+ L G M W L D+
Sbjct: 392 KQQQLGGVMFWHLGQDN 408
>pdb|1E6N|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
pdb|1E6P|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6P|B Chain B, Chitinase B From Serratia Marcescens Inactive Mutant E144q
pdb|1E6N|A Chain A, Chitinase B From Serratia Marcescens Inactive Mutant E144q
In Complex With N-Acetylglucosamine-Pentamer
Length = 499
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 163/377 (43%), Gaps = 83/377 (22%)
Query: 94 THILLAFAQVSKNNTVAHLEPDHVKYYRDVV----AMKLLNPNLKVLISV------TDAG 143
THI +F ++ N A + RDVV A+K NP+L+++ S+ D G
Sbjct: 45 THINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLG 104
Query: 144 T--GNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLL 201
N+ AV T A+R F++S + + ++ DG+D+DW++P ++ E F L
Sbjct: 105 VSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDIDWQYP------QAAEVDGFIAAL 158
Query: 202 QQLKFTLS------GR----FLMTVAVAAPGPIIDRAYDVPLMGRLV---DFVSIMGYDY 248
Q+++ L+ GR + +T+A A + R Y + ++V D++++M YD
Sbjct: 159 QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLDYINLMTYDL 216
Query: 249 HSYIWYLPVLGPNAPLYPAVTDQGYFKSL---NANWS--------------------VNY 285
+ V A L+ ++ +L N WS +
Sbjct: 217 AGP--WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQH 274
Query: 286 YLYKGIPANKLLLGLPTYGHSYTLVN------------PDSTDYGMPAADVGRIGNQGFV 333
+ +G+P+ K+++G+P YG ++ V+ P Y P+ D +G + V
Sbjct: 275 LMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPY--PSTDYWLVGCEECV 332
Query: 334 DYID-TVAFLRDPDTI--------QIFDKNTSVPYAYRGDQ--WISFDNEPSLAYKTEYL 382
D +A R + + ++++ T PY Y ++++D+ S YK +Y+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYI 392
Query: 383 MSKGLAGAMVWCLNTDD 399
+ L G M W L D+
Sbjct: 393 KQQQLGGVMFWHLGQDN 409
>pdb|1EDQ|A Chain A, Crystal Structure Of Chitinase A From S. Marcescens At
1.55 Angstroms
pdb|1FFQ|A Chain A, Crystal Structure Of Chitinase A Complexed With
Allosamidin
Length = 540
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 85/328 (25%), Positives = 143/328 (43%), Gaps = 28/328 (8%)
Query: 92 LCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAV 151
+ H A Q ++ A +P + + ++A+K +P+LK+L S+ + +
Sbjct: 203 VSIHDPFAALQKAQKGVTAWDDP-YKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFM 261
Query: 152 STRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPN------KSHEK-----RMFSK 199
+ R F S+ EFL DG+D+DWEFPG G N + E +
Sbjct: 262 GDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRA 321
Query: 200 LLQQLKFTLSGRFLMTVAVAAPGPIIDR-AYDVPLMGRLVDFVSIMGYDYHSYIWYLPVL 258
+L QL ++ +T A++A ID+ AY+V +D + +M YD++ + L L
Sbjct: 322 MLDQLSVETGRKYELTSAISAGKDKIDKVAYNVAQ--NSMDHIFLMSYDFYG-AFDLKNL 378
Query: 259 GPNAPL-YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
G L PA + ++N VN L +G+ K+++G YG +T VN +
Sbjct: 379 GHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 318 ---GMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR---GDQWISFDN 371
G V G VDY + +D PY ++ GD I+FD+
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDD 494
Query: 372 EPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S+ K +Y++ K L G W ++ D+
Sbjct: 495 ARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1CTN|A Chain A, Crystal Structure Of A Bacterial Chitinase At 2.3
Angstroms Resolution
Length = 540
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 148/328 (45%), Gaps = 28/328 (8%)
Query: 92 LCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAV 151
+ H A Q ++ A +P + + ++A+K +P+LK+L S+ + +
Sbjct: 203 ISIHDPFAALQKAQKGVTAWDDP-YKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFM 261
Query: 152 STRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPNKS----HEKRMFSKLLQQLKF 206
+ R F S+ EFL DG+D+DWEFPG G N + + + L+++L+
Sbjct: 262 GDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRA 321
Query: 207 TL------SGR-FLMTVAVAAPGPIIDR-AYDVPLMGRLVDFVSIMGYDYHSYIWYLPVL 258
L +GR + +T A++A ID+ AY+V +D + +M YD++ + L L
Sbjct: 322 MLDQLSTETGRKYELTSAISAGKDKIDKVAYNVAQ--NSMDHIFLMSYDFYG-AFDLKNL 378
Query: 259 GPNAPL-YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
G L PA + ++N VN L +G+ K+++G YG +T VN +
Sbjct: 379 GHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 318 ---GMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR---GDQWISFDN 371
G V G VDY + +D PY ++ GD I+FD+
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDD 494
Query: 372 EPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S+ K +Y++ K L G W ++ D+
Sbjct: 495 ARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1UR9|A Chain A, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
pdb|1UR9|B Chain B, Interactions Of A Family 18 Chitinase With The Designed
Inhibitor Hm508, And Its Degradation Product,
Chitobiono-Delta-Lactone
Length = 499
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 163/377 (43%), Gaps = 83/377 (22%)
Query: 94 THILLAFAQVSKNNTVAHLEPDHVKYYRDVV----AMKLLNPNLKVLISV------TDAG 143
THI +F ++ N A + RDVV A+K NP+L+++ S+ D G
Sbjct: 45 THINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLG 104
Query: 144 T--GNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLL 201
N+ AV T A+R F++S + + ++ DG+D++WE+P ++ E F L
Sbjct: 105 VSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYP------QAAEVDGFIAAL 158
Query: 202 QQLKFTLS------GR----FLMTVAVAAPGPIIDRAYDVPLMGRLV---DFVSIMGYDY 248
Q+++ L+ GR + +T+A A + R Y + ++V D++++M YD
Sbjct: 159 QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLDYINLMTYDL 216
Query: 249 HSYIWYLPVLGPNAPLYPAVTDQGYFKSL---NANWS--------------------VNY 285
+ V A L+ ++ +L N WS +
Sbjct: 217 AGP--WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQH 274
Query: 286 YLYKGIPANKLLLGLPTYGHSYTLVN------------PDSTDYGMPAADVGRIGNQGFV 333
+ +G+P+ K+++G+P YG ++ V+ P Y P+ D +G + V
Sbjct: 275 LMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPY--PSTDYWLVGCEECV 332
Query: 334 DYID-TVAFLRDPDTI--------QIFDKNTSVPYAYRGDQ--WISFDNEPSLAYKTEYL 382
D +A R + + ++++ T PY Y ++++D+ S YK +Y+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYI 392
Query: 383 MSKGLAGAMVWCLNTDD 399
+ L G M W L D+
Sbjct: 393 KQQQLGGVMFWHLGQDN 409
>pdb|2WLY|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline.
pdb|2WLZ|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline.
pdb|2WM0|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitobio-Thiazoline Thioamide
Length = 548
Score = 87.4 bits (215), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 149/328 (45%), Gaps = 28/328 (8%)
Query: 92 LCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAV 151
+ H A Q ++ A +P + + ++A+K +P+LK+L S+ + +
Sbjct: 203 VSIHDPFAALQKAQKGVTAWDDP-YKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFM 261
Query: 152 STRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPNKS----HEKRMFSKLLQQLKF 206
+ R F S+ EFL DG+D+DWEFPG G N + + + L+++L+
Sbjct: 262 GDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRA 321
Query: 207 TL------SGR-FLMTVAVAAPGPIIDR-AYDVPLMGRLVDFVSIMGYDYHSYIWYLPVL 258
L +GR + +T A++A ID+ AY+V +D + +M YD++ + L L
Sbjct: 322 MLDQLSAETGRKYELTSAISAGKDKIDKVAYNVAQ--NSMDHIFLMSYDFYG-AFDLKNL 378
Query: 259 GPNAPL-YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
G L PA + ++N VN L +G+ K+++G YG +T VN +
Sbjct: 379 GHQTALNAPAWKPDTAYTTVNG---VNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 318 ---GMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR---GDQWISFDN 371
G V G VDY + + +D PY ++ GD I+FD+
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDD 494
Query: 372 EPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S+ K +Y++ K L G W ++ D+
Sbjct: 495 ARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|2WK2|A Chain A, Chitinase A From Serratia Marcescens Atcc990 In Complex
With Chitotrio-Thiazoline Dithioamide
Length = 540
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 149/328 (45%), Gaps = 28/328 (8%)
Query: 92 LCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAV 151
+ H A Q ++ A +P + + ++A+K +P+LK+L S+ + +
Sbjct: 203 VSIHDPFAALQKAQKGVTAWDDP-YKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFM 261
Query: 152 STRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPNKS----HEKRMFSKLLQQLKF 206
+ R F S+ EFL DG+D+DWEFPG G N + + + L+++L+
Sbjct: 262 GDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRA 321
Query: 207 TL------SGR-FLMTVAVAAPGPIIDR-AYDVPLMGRLVDFVSIMGYDYHSYIWYLPVL 258
L +GR + +T A++A ID+ AY+V +D + +M YD++ + L L
Sbjct: 322 MLDQLSAETGRKYELTSAISAGKDKIDKVAYNVAQ--NSMDHIFLMSYDFYG-AFDLKNL 378
Query: 259 GPNAPL-YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
G L PA + ++N VN L +G+ K+++G YG +T VN +
Sbjct: 379 GHQTALNAPAWKPDTAYTTVNG---VNALLTQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 318 ---GMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR---GDQWISFDN 371
G V G VDY + + +D PY ++ GD I+FD+
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDD 494
Query: 372 EPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S+ K +Y++ K L G W ++ D+
Sbjct: 495 ARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1OGB|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGB|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n
pdb|1OGG|A Chain A, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
pdb|1OGG|B Chain B, Chitinase B From Serratia Marcescens Mutant D142n In
Complex With Inhibitor Allosamidin
Length = 499
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 163/377 (43%), Gaps = 83/377 (22%)
Query: 94 THILLAFAQVSKNNTVAHLEPDHVKYYRDVV----AMKLLNPNLKVLISV------TDAG 143
THI +F ++ N A + RDVV A+K NP+L+++ S+ D G
Sbjct: 45 THINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLG 104
Query: 144 T--GNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLL 201
N+ AV T A+R F++S + + ++ DG+D++WE+P ++ E F L
Sbjct: 105 VSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVDINWEYP------QAAEVDGFIAAL 158
Query: 202 QQLKFTLS------GR----FLMTVAVAAPGPIIDRAYDVPLMGRLV---DFVSIMGYDY 248
Q+++ L+ GR + +T+A A + R Y + ++V D++++M YD
Sbjct: 159 QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLDYINLMTYDL 216
Query: 249 HSYIWYLPVLGPNAPLYPAVTDQGYFKSL---NANWS--------------------VNY 285
+ V A L+ ++ +L N WS +
Sbjct: 217 AGP--WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQH 274
Query: 286 YLYKGIPANKLLLGLPTYGHSYTLVN------------PDSTDYGMPAADVGRIGNQGFV 333
+ +G+P+ K+++G+P YG ++ V+ P Y P+ D +G + V
Sbjct: 275 LMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPY--PSTDYWLVGCEECV 332
Query: 334 DYID-TVAFLRDPDTI--------QIFDKNTSVPYAYRGDQ--WISFDNEPSLAYKTEYL 382
D +A R + + ++++ T PY Y ++++D+ S YK +Y+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYI 392
Query: 383 MSKGLAGAMVWCLNTDD 399
+ L G M W L D+
Sbjct: 393 KQQQLGGVMFWHLGQDN 409
>pdb|1GOI|A Chain A, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
pdb|1GOI|B Chain B, Crystal Structure Of The D140n Mutant Of Chitinase B From
Serratia Marcescens At 1.45 A Resolution
Length = 499
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 88/377 (23%), Positives = 163/377 (43%), Gaps = 83/377 (22%)
Query: 94 THILLAFAQVSKNNTVAHLEPDHVKYYRDVV----AMKLLNPNLKVLISV------TDAG 143
THI +F ++ N A + RDVV A+K NP+L+++ S+ D G
Sbjct: 45 THINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSNDLG 104
Query: 144 T--GNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLL 201
N+ AV T A+R F++S + + ++ DG+++DWE+P ++ E F L
Sbjct: 105 VSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYP------QAAEVDGFIAAL 158
Query: 202 QQLKFTLS------GR----FLMTVAVAAPGPIIDRAYDVPLMGRLV---DFVSIMGYDY 248
Q+++ L+ GR + +T+A A + R Y + ++V D++++M YD
Sbjct: 159 QEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSK--LAQIVAPLDYINLMTYDL 216
Query: 249 HSYIWYLPVLGPNAPLYPAVTDQGYFKSL---NANWS--------------------VNY 285
+ V A L+ ++ +L N WS +
Sbjct: 217 AGP--WEKVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQH 274
Query: 286 YLYKGIPANKLLLGLPTYGHSYTLVN------------PDSTDYGMPAADVGRIGNQGFV 333
+ +G+P+ K+++G+P YG ++ V+ P Y P+ D +G + V
Sbjct: 275 LMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPY--PSTDYWLVGCEECV 332
Query: 334 DYID-TVAFLRDPDTI--------QIFDKNTSVPYAYRGDQ--WISFDNEPSLAYKTEYL 382
D +A R + + ++++ T PY Y ++++D+ S YK +Y+
Sbjct: 333 RDKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYI 392
Query: 383 MSKGLAGAMVWCLNTDD 399
+ L G M W L D+
Sbjct: 393 KQQQLGGVMFWHLGQDN 409
>pdb|1RD6|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6L|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a
pdb|1X6N|A Chain A, Crystal Structure Of S. Marcescens Chitinase A Mutant
W167a In Complex With Allosamidin
Length = 563
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 86/328 (26%), Positives = 149/328 (45%), Gaps = 28/328 (8%)
Query: 92 LCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAV 151
+ H A Q ++ A +P + + ++A+K +P+LK+L S+ + +
Sbjct: 226 ISIHDPFAALQKAQKGVTAWDDP-YKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFM 284
Query: 152 STRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPNKS----HEKRMFSKLLQQLKF 206
+ R F S+ EFL DG+D+DWEFPG G N + + + L+++L+
Sbjct: 285 GDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRA 344
Query: 207 TL------SGR-FLMTVAVAAPGPIIDR-AYDVPLMGRLVDFVSIMGYDYHSYIWYLPVL 258
L +GR + +T A++A ID+ AY+V +D + +M YD++ + L L
Sbjct: 345 MLDQLSAETGRKYELTSAISAGKDKIDKVAYNVAQ--NSMDHIFLMSYDFYG-AFDLKNL 401
Query: 259 GPNAPL-YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
G L PA + ++N VN L +G+ K+++G YG +T VN +
Sbjct: 402 GHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 458
Query: 318 ---GMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR---GDQWISFDN 371
G V G VDY + + +D PY ++ GD I+FD+
Sbjct: 459 PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDD 517
Query: 372 EPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S+ K +Y++ K L G W ++ D+
Sbjct: 518 ARSVQAKGKYVLDKQLGGLFSWEIDADN 545
>pdb|1EHN|A Chain A, Crystal Structure Of Chitinase A Mutant E315q Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 28/328 (8%)
Query: 92 LCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAV 151
+ H A Q ++ A +P + + ++A+K +P+LK+L S+ + +
Sbjct: 203 VSIHDPFAALQKAQKGVTAWDDP-YKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFM 261
Query: 152 STRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPN------KSHEK-----RMFSK 199
+ R F S+ EFL DG+D+DW+FPG G N + E +
Sbjct: 262 GDKVKRDRFVGSVKEFLQTWKFFDGVDIDWQFPGGKGANPNLGSPQDGETYVLLMKELRA 321
Query: 200 LLQQLKFTLSGRFLMTVAVAAPGPIIDR-AYDVPLMGRLVDFVSIMGYDYHSYIWYLPVL 258
+L QL ++ +T A++A ID+ AY+V +D + +M YD++ + L L
Sbjct: 322 MLDQLSVETGRKYELTSAISAGKDKIDKVAYNVAQ--NSMDHIFLMSYDFYG-AFDLKNL 378
Query: 259 GPNAPL-YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
G L PA + ++N VN L +G+ K+++G YG +T VN +
Sbjct: 379 GHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 318 ---GMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR---GDQWISFDN 371
G V G VDY + +D PY ++ GD I+FD+
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDD 494
Query: 372 EPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S+ K +Y++ K L G W ++ D+
Sbjct: 495 ARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1FFR|A Chain A, Crystal Structure Of Chitinase A Mutant Y390f Complexed
With Hexa-n- Acetylchitohexaose (nag)6
Length = 540
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 28/328 (8%)
Query: 92 LCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAV 151
+ H A Q ++ A +P + + ++A+K +P+LK+L S+ + +
Sbjct: 203 VSIHDPFAALQKAQKGVTAWDDP-YKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFM 261
Query: 152 STRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPN------KSHEK-----RMFSK 199
+ R F S+ EFL DG+D+DWEFPG G N + E +
Sbjct: 262 GDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRA 321
Query: 200 LLQQLKFTLSGRFLMTVAVAAPGPIIDR-AYDVPLMGRLVDFVSIMGYDYHSYIWYLPVL 258
+L QL ++ +T A++A ID+ AY+V +D + +M +D++ + L L
Sbjct: 322 MLDQLSVETGRKYELTSAISAGKDKIDKVAYNVAQ--NSMDHIFLMSFDFYG-AFDLKNL 378
Query: 259 GPNAPL-YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
G L PA + ++N VN L +G+ K+++G YG +T VN +
Sbjct: 379 GHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 318 ---GMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR---GDQWISFDN 371
G V G VDY + +D PY ++ GD I+FD+
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDD 494
Query: 372 EPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S+ K +Y++ K L G W ++ D+
Sbjct: 495 ARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1EIB|A Chain A, Crystal Structure Of Chitinase A Mutant D313a Complexed
With Octa-N- Acetylchitooctaose (Nag)8
Length = 540
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 142/328 (43%), Gaps = 28/328 (8%)
Query: 92 LCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAV 151
+ H A Q ++ A +P + + ++A+K +P+LK+L S+ + +
Sbjct: 203 VSIHDPFAALQKAQKGVTAWDDP-YKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFM 261
Query: 152 STRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPN------KSHEK-----RMFSK 199
+ R F S+ EFL DG+D+ WEFPG G N + E +
Sbjct: 262 GDKVKRDRFVGSVKEFLQTWKFFDGVDIAWEFPGGKGANPNLGSPQDGETYVLLMKELRA 321
Query: 200 LLQQLKFTLSGRFLMTVAVAAPGPIIDR-AYDVPLMGRLVDFVSIMGYDYHSYIWYLPVL 258
+L QL ++ +T A++A ID+ AY+V +D + +M YD++ + L L
Sbjct: 322 MLDQLSVETGRKYELTSAISAGKDKIDKVAYNVAQ--NSMDHIFLMSYDFYG-AFDLKNL 378
Query: 259 GPNAPL-YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
G L PA + ++N VN L +G+ K+++G YG +T VN +
Sbjct: 379 GHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 318 ---GMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR---GDQWISFDN 371
G V G VDY + +D PY ++ GD I+FD+
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDD 494
Query: 372 EPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S+ K +Y++ K L G W ++ D+
Sbjct: 495 ARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1K9T|A Chain A, Chitinase A Complexed With Tetra-N-Acetylchitotriose
Length = 540
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 142/328 (43%), Gaps = 28/328 (8%)
Query: 92 LCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAV 151
+ H A Q ++ A +P + + ++A+K +P+LK+L S+ + +
Sbjct: 203 VSIHDPFAALQKAQKGVTAWDDP-YKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFM 261
Query: 152 STRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPN------KSHEK-----RMFSK 199
+ R F S+ EFL DG+D+DWEFPG G N + E +
Sbjct: 262 GDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKGANPNLGSPQDGETYVLLMKELRA 321
Query: 200 LLQQLKFTLSGRFLMTVAVAAPGPIIDR-AYDVPLMGRLVDFVSIMGYDYHSYIWYLPVL 258
+L QL ++ +T A++A ID+ AY+V +D + +M Y ++ + L L
Sbjct: 322 MLDQLSVETGRKYELTSAISAGKDKIDKVAYNVAQ--NSMDHIFLMSYAFYG-AFDLKNL 378
Query: 259 GPNAPL-YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
G L PA + ++N VN L +G+ K+++G YG +T VN +
Sbjct: 379 GHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 318 ---GMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR---GDQWISFDN 371
G V G VDY + +D PY ++ GD I+FD+
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDD 494
Query: 372 EPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S+ K +Y++ K L G W ++ D+
Sbjct: 495 ARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|1NH6|A Chain A, Structure Of S. Marcescens Chitinase A, E315l, Complex
With Hexasaccharide
Length = 540
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 84/328 (25%), Positives = 143/328 (43%), Gaps = 28/328 (8%)
Query: 92 LCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAV 151
+ H A Q ++ A +P + + ++A+K +P+LK+L S+ + +
Sbjct: 203 VSIHDPFAALQKAQKGVTAWDDP-YKGNFGQLMALKQAHPDLKILPSIGGWTLSDPFFFM 261
Query: 152 STRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPN------KSHEK-----RMFSK 199
+ R F S+ EFL DG+D+DW FPG G N + E +
Sbjct: 262 GDKVKRDRFVGSVKEFLQTWKFFDGVDIDWLFPGGKGANPNLGSPQDGETYVLLMKELRA 321
Query: 200 LLQQLKFTLSGRFLMTVAVAAPGPIIDR-AYDVPLMGRLVDFVSIMGYDYHSYIWYLPVL 258
+L QL ++ +T A++A ID+ AY+V +D + +M YD++ + L L
Sbjct: 322 MLDQLSVETGRKYELTSAISAGKDKIDKVAYNVAQ--NSMDHIFLMSYDFYG-AFDLKNL 378
Query: 259 GPNAPL-YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
G L PA + ++N VN L +G+ K+++G YG +T VN +
Sbjct: 379 GHQTALNAPAWKPDTAYTTVNG---VNALLAQGVKPGKIVVGTAMYGRGWTGVNGYQNNI 435
Query: 318 ---GMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR---GDQWISFDN 371
G V G VDY + + +D PY ++ GD I+FD+
Sbjct: 436 PFTGTATGPVKGTWENGIVDYRQIASQFMSGEWQYTYDATAEAPYVFKPSTGDL-ITFDD 494
Query: 372 EPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S+ K +Y++ K L G W ++ D+
Sbjct: 495 ARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>pdb|3ARS|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure Of Mutant
W275g
pdb|3ART|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Dequalinium
pdb|3ARU|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Pentoxifylline
pdb|3AS0|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Sanguinarine
pdb|3AS1|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Chelerythrine
pdb|3AS2|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With Propentofylline
pdb|3AS3|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - W275g Mutant Complex
Structure With 2-(Imidazolin-
2-Yl)-5-Isothiocyanatobenzofuran
Length = 584
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 86/329 (26%), Positives = 136/329 (41%), Gaps = 54/329 (16%)
Query: 120 YRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNL-DGIDL 178
Y ++A+K NP+LK++ S+ + + NR F S+ +FL DG+D+
Sbjct: 232 YAMLMALKQRNPDLKIIPSIGGGTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDI 291
Query: 179 DWEFP---------GWP---GPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIID 226
DWEFP G P GP R +L +L+ + +T A+ G D
Sbjct: 292 DWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAI---GVGYD 348
Query: 227 RAYDVPLMGRL--VDFVSIMGYDYHSYIWYLPVLGPNAPLY------PAVTDQGYFK--- 275
+ DV + +D++ M YD+ Y + V G LY P D G
Sbjct: 349 KIEDVDYADAVQYMDYIFAMTYDF--YGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENG 406
Query: 276 ------SLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDS-TDYG--MPAADVGR 326
+ A+ + L +G+PANKL+LG YG + V PD+ TD M G+
Sbjct: 407 EPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGK 466
Query: 327 IGNQ--------GFVDYIDTVAFLRDPDTIQI------FDKNTSVPYAYRGD--QWISFD 370
+ G +DY +F+ + I +D P+ + + I+FD
Sbjct: 467 LKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFD 526
Query: 371 NEPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
+ S+ K Y S GLAG W ++ D+
Sbjct: 527 DHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B8S|A Chain A, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3B8S|B Chain B, Crystal Structure Of Wild-Type Chitinase A From Vibrio
Harveyi
pdb|3ARO|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Apo Structure
pdb|3ARP|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Dequalinium
pdb|3ARQ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Idarubicin
pdb|3ARR|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Pentoxifylline
pdb|3ARV|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Sanguinarine
pdb|3ARW|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Chelerythrine
pdb|3ARX|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
Propentofylline
pdb|3ARY|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
pdb|3ARZ|A Chain A, Crystal Structure Analysis Of Chitinase A From Vibrio
Harveyi With Novel Inhibitors - Complex Structure With
2-(Imidazolin-2-Yl)-5- Isothiocyanatobenzofuran
Length = 584
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 135/329 (41%), Gaps = 54/329 (16%)
Query: 120 YRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNL-DGIDL 178
Y ++A+K NP+LK++ S+ + + NR F S+ +FL DG+D+
Sbjct: 232 YAMLMALKQRNPDLKIIPSIGGWTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDI 291
Query: 179 DWEFP---------GWP---GPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIID 226
DWEFP G P GP R +L +L+ + +T A+ G D
Sbjct: 292 DWEFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAI---GVGYD 348
Query: 227 RAYDVPLMGRL--VDFVSIMGYDYHSYIWYLPVLGPNAPLY------PAVTDQGYFK--- 275
+ DV + +D++ M YD+ Y + V G LY P D G
Sbjct: 349 KIEDVDYADAVQYMDYIFAMTYDF--YGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENG 406
Query: 276 ------SLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDS-TDYGMP-------- 320
+ A+ + L +G+PANKL+LG YG + V PD+ TD P
Sbjct: 407 EPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGK 466
Query: 321 --AADVGRIGNQGFVDYIDTVAFLRDPDTIQI------FDKNTSVPYAYRGD--QWISFD 370
+ + G +DY +F+ + I +D P+ + + I+FD
Sbjct: 467 LKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFD 526
Query: 371 NEPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
+ S+ K Y S GLAG W ++ D+
Sbjct: 527 DHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|3B9A|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Hexasaccharide
pdb|3B9D|A Chain A, Crystal Structure Of Vibrio Harveyi Chitinase A Complexed
With Pentasaccharide
pdb|3B9E|A Chain A, Crystal Structure Of Inactive Mutant E315m Chitinase A
From Vibrio Harveyi
Length = 584
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 134/329 (40%), Gaps = 54/329 (16%)
Query: 120 YRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNL-DGIDL 178
Y ++A+K NP+LK++ S+ + + NR F S+ +FL DG+D+
Sbjct: 232 YAMLMALKQRNPDLKIIPSIGGWTLSDPFYDFVDKKNRDTFVASVKKFLKTWKFYDGVDI 291
Query: 179 DWEFP---------GWP---GPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIID 226
DW FP G P GP R +L +L+ + +T A+ G D
Sbjct: 292 DWMFPGGGGAAADKGDPVNDGPAYIALMRELRVMLDELEAETGRTYELTSAI---GVGYD 348
Query: 227 RAYDVPLMGRL--VDFVSIMGYDYHSYIWYLPVLGPNAPLY------PAVTDQGYFK--- 275
+ DV + +D++ M YD+ Y + V G LY P D G
Sbjct: 349 KIEDVDYADAVQYMDYIFAMTYDF--YGGWNNVPGHQTALYCGSFMRPGQCDGGGVDENG 406
Query: 276 ------SLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDS-TDYGMP-------- 320
+ A+ + L +G+PANKL+LG YG + V PD+ TD P
Sbjct: 407 EPYKGPAYTADNGIQLLLAQGVPANKLVLGTAMYGRGWEGVTPDTLTDPNDPMTGTATGK 466
Query: 321 --AADVGRIGNQGFVDYIDTVAFLRDPDTIQI------FDKNTSVPYAYRGD--QWISFD 370
+ + G +DY +F+ + I +D P+ + + I+FD
Sbjct: 467 LKGSTAQGVWEDGVIDYKGIKSFMLGANNTGINGFEYGYDAQAEAPWVWNRSTGELITFD 526
Query: 371 NEPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
+ S+ K Y S GLAG W ++ D+
Sbjct: 527 DHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>pdb|4DWS|A Chain A, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 61/276 (22%), Positives = 110/276 (39%), Gaps = 26/276 (9%)
Query: 147 FAKAVSTRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGP----NKSHEKRMFSKLL 201
F+ R F S+++F + + +D+DWE+PG G + + + L+
Sbjct: 227 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLI 286
Query: 202 QQLKFTLSGRF------LMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYL 255
++L+ L RF +++A + + + L+ +D + +M YD+ IW
Sbjct: 287 KELRSALDSRFGYSNRXEISIACSGVXAXLKXSNIDQLVANGLDNIYLMSYDFFGTIW-A 345
Query: 256 PVLGPNAPLY-PAVTDQGYFKSLNANWSVNYYLYK-GIPANKLLLGLPTYGHSYTLVNPD 313
+G + LY P + L+A +++Y + GIP K+ LG YG S +
Sbjct: 346 DYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEKIHLGYANYGRSAVGGDLT 405
Query: 314 STDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSV-----------PYAYR 362
+ Y +G + N G ++ D V D + KN V ++
Sbjct: 406 TRQYTXNGPALGTMEN-GAPEFFDIVXNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEA 464
Query: 363 GDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
+IS D ++ K EY L G W + D
Sbjct: 465 XGHFISLDTPRTVXQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|4DWS|D Chain D, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 63/276 (22%), Positives = 112/276 (40%), Gaps = 26/276 (9%)
Query: 147 FAKAVSTRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPG--PNKSHEK--RMFSKLL 201
F+ R F S+++F + + +D+DWE+PG G N S +K + L+
Sbjct: 227 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDKDGENYVLLI 286
Query: 202 QQLKFTLSGRF------LMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYL 255
++L+ L RF +++A + + ++ L+ +D + +M YD+ IW
Sbjct: 287 KELRSALDSRFGYSNRXEISIACSGVXAXLKKSNIDQLVANGLDNIYLMSYDFFGTIW-A 345
Query: 256 PVLGPNAPLY-PAVTDQGYFKSLNANWSVNYYLYK-GIPANKLLLGLPTYGHSYTLVNPD 313
+G + LY P + L+A +++Y + GIP + LG YG S +
Sbjct: 346 DYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAVGGDLT 405
Query: 314 STDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSV-----------PYAYR 362
+ Y +G + N G ++ D V D + KN V ++
Sbjct: 406 TRQYTXNGPALGTMEN-GAPEFFDIVKNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEA 464
Query: 363 GDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
+IS D ++ K EY L G W + D
Sbjct: 465 KGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|4DWS|C Chain C, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 54.7 bits (130), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 110/276 (39%), Gaps = 26/276 (9%)
Query: 147 FAKAVSTRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGP----NKSHEKRMFSKLL 201
F+ R F S+++F + + +D+DWE+PG G + + + L+
Sbjct: 227 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLI 286
Query: 202 QQLKFTLSGRF------LMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYL 255
++L+ L RF +++A + + ++ L+ +D + +M YD+ IW
Sbjct: 287 KELRSALDSRFGYSNRXEISIACSGVXAXLKKSNIDQLVANGLDNIYLMSYDFFGTIW-A 345
Query: 256 PVLGPNAPLY-PAVTDQGYFKSLNANWSVNYYLYK-GIPANKLLLGLPTYGHSYTLVNPD 313
+G + LY P + L+A +++Y + GIP + LG YG S +
Sbjct: 346 DYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAVGGDLT 405
Query: 314 STDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSV-----------PYAYR 362
+ Y +G + N G ++ D V D + KN V ++
Sbjct: 406 TRQYTXNGPALGTMEN-GAPEFFDIVXNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEA 464
Query: 363 GDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
+IS D ++ K EY L G W + D
Sbjct: 465 XGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|4DWS|B Chain B, Crystal Structure Of A Chitinase From The Yersinia
Entomophaga Toxin Complex
Length = 546
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/276 (21%), Positives = 108/276 (39%), Gaps = 26/276 (9%)
Query: 147 FAKAVSTRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGP----NKSHEKRMFSKLL 201
F+ R F S+++F + + +D+DWE+PG G + + + L+
Sbjct: 227 FSALAENPDERRVFVASVVDFFVRFPMFSCVDIDWEYPGGGGDEGNISSDXDGENYVLLI 286
Query: 202 QQLKFTLSGRF------LMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYL 255
+L+ L RF +++A + + + L+ +D + +M YD+ IW
Sbjct: 287 XELRSALDSRFGYSNRXEISIACSGVXAXLKXSNIDQLVANGLDNIYLMSYDFFGTIW-A 345
Query: 256 PVLGPNAPLY-PAVTDQGYFKSLNANWSVNYYLYK-GIPANKLLLGLPTYGHSYTLVNPD 313
+G + LY P + L+A +++Y + GIP + LG YG S +
Sbjct: 346 DYIGHHTNLYSPKDPGEQELFDLSAEAAIDYLHNELGIPMEXIHLGYANYGRSAVGGDLT 405
Query: 314 STDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSV-----------PYAYR 362
+ Y +G + N G ++ D V D + KN V ++
Sbjct: 406 TRQYTXNGPALGTMEN-GAPEFFDIVKNYMDAEHSLSMGKNGFVLMTDTNADADFLFSEA 464
Query: 363 GDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398
+IS D ++ K EY L G W + D
Sbjct: 465 KGHFISLDTPRTVKQKGEYAAKNKLGGVFSWSGDQD 500
>pdb|3CO4|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
pdb|3FND|A Chain A, Crystal Structure Of A Chitinase From Bacteroides
Thetaiotaomicron
Length = 312
Score = 48.9 bits (115), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 73/325 (22%), Positives = 129/325 (39%), Gaps = 58/325 (17%)
Query: 94 THILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVST 153
THI +FA+V + T+ ++ P V+ + V N+K+LIS+ G F A++
Sbjct: 30 THINASFARVKADGTL-NINP--VRKRIESVRETAHKHNVKILISLAKNSPGEFTTAIND 86
Query: 154 RANRLAFSESILEFLIEHNLDGIDLDW-EFPGWPGPNKSHEKRMFSKLL---QQLKFTLS 209
R + I+ F E+ LDG D+D+ E+ W + F LL + L
Sbjct: 87 PKARKELIQQIIAFTKEYKLDGFDIDYEEYDNWD--------KNFPSLLVFARGLYLAKE 138
Query: 210 GRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVT 269
L T AV + ++ + D++++ YD ++ + P+ A
Sbjct: 139 KNXLXTCAVNSRWLNYGTEWE-----QYFDYINLXSYDRGAF--------TDKPVQHASY 185
Query: 270 DQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGN 329
D + K L W+ K +K++ GLP YG+S+ + D DV I
Sbjct: 186 DD-FVKDLKY-WNEQCRASK----SKIVGGLPFYGYSWEESLQGAVD------DVRGIRY 233
Query: 330 QGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAG 389
G + ++ A +D N Y ++ P++A K +++ AG
Sbjct: 234 SGILKHLGNEAADKD---------NIGKTY---------YNGRPTIANKCKFIKENDYAG 275
Query: 390 AMVWCLNTDDYAAKYHTSPYPLIKR 414
+W L D + Y ++ R
Sbjct: 276 VXIWQLFQDAHNDNYDLKLINVVGR 300
>pdb|3CZ8|A Chain A, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
pdb|3CZ8|B Chain B, Crystal Structure Of Putative Sporulation-Specific
Glycosylase Ydhd From Bacillus Subtilis
Length = 319
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/237 (21%), Positives = 109/237 (45%), Gaps = 40/237 (16%)
Query: 89 NPNLCTHILLAFAQVSKNNTVA--HLEP--DHVKYYRDVVAMKLL-NPNLKVLISVTDAG 143
NP+L ++ +A S + ++ H+ P D D A++ + L ++T+
Sbjct: 18 NPDLDRELINDYAPYSSSISIFEYHIAPNGDIANQLNDAAAIETTWQRRVTPLATITNLT 77
Query: 144 TGNFAKAVSTRA-----NRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFS 198
+G F+ + + R +I + + G+ +D+E + ++ +F+
Sbjct: 78 SGGFSTEIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFE------QVSAADRDLFT 131
Query: 199 KLLQQLKFTL-SGRFLMTVAVAAPGPIID-----RAYDVPLMGRLVDFVSIMGYDYHSYI 252
L+QL+ L +G +++T+AV P D R YD +G +V+++ IM YD+H +
Sbjct: 132 GFLRQLRDRLQAGGYVLTIAV--PAKTSDNIPWLRGYDYGGIGAVVNYMFIMAYDWH-HA 188
Query: 253 WYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTL 309
P GP AP+ ++ + + + +P+ K+++G+P YG+ + +
Sbjct: 189 GSEP--GPVAPI------------TEIRRTIEFTIAQ-VPSRKIIIGVPLYGYDWII 230
>pdb|3SIM|A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
pdb|3SIM|B Chain B, Crystallographic Structure Analysis Of Family 18 Chitinase
From Crocus Vernus
Length = 275
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 16/143 (11%)
Query: 112 LEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFA---KAVSTRANRLAFSESILEFL 168
L PD + A+K +PN++V +S+ A G+ +A S + S+ +
Sbjct: 61 LGPDQIS------AIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRII 114
Query: 169 IEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRA 228
+NLDGID+D+E ++ +K F++ + +L TL +++ A +P P +D
Sbjct: 115 QRYNLDGIDIDYEHF------QNTDKNTFAECIGRLITTLKKNGVISFASISPFPSVDEY 168
Query: 229 YDVPLMGRLVDFVSIMGYDYHSY 251
Y + L + ++ + Y + +Y
Sbjct: 169 Y-LALFNEYKNAINHINYQFKAY 190
>pdb|3OA5|A Chain A, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
pdb|3OA5|B Chain B, The Structure Of Chi1, A Chitinase From Yersinia
Entomophaga
Length = 574
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 144 TGNFAKAVSTRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPG---PNKSHEKRMFSK 199
+G F++ R F E I +F + +D+DWE+PG G PN + F+
Sbjct: 250 SGLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYPGSIGAGNPNSPDDGANFAI 309
Query: 200 LLQQL-KFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDY 248
L+QQ+ +S +++A +A ID A LM V +++M YD+
Sbjct: 310 LIQQITDAKISNLKGISIASSADPAKIDAANIPALMDAGVTGINLMTYDF 359
>pdb|4A5Q|A Chain A, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|B Chain B, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|C Chain C, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|D Chain D, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
pdb|4A5Q|E Chain E, Crystal Structure Of The Chitinase Chi1 Fitted Into The 3d
Structure Of The Yersinia Entomophaga Toxin Complex
Length = 546
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 53/110 (48%), Gaps = 5/110 (4%)
Query: 144 TGNFAKAVSTRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPG---PNKSHEKRMFSK 199
+G F++ R F E I +F + +D+DWE+PG G PN + F+
Sbjct: 222 SGLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYPGSIGAGNPNSPDDGANFAI 281
Query: 200 LLQQL-KFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDY 248
L+QQ+ +S +++A +A ID A LM V +++M YD+
Sbjct: 282 LIQQITDAKISNLKGISIASSADPAKIDAANIPALMDAGVTGINLMTYDF 331
>pdb|2Y8V|A Chain A, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|B Chain B, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|C Chain C, Structure Of Chitinase, Chic, From Aspergillus Fumigatus.
pdb|2Y8V|D Chain D, Structure Of Chitinase, Chic, From Aspergillus Fumigatus
Length = 290
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/199 (22%), Positives = 83/199 (41%), Gaps = 42/199 (21%)
Query: 66 DNYQLFCYYSLPQNSSG----LLPHQLNPNLCTHILLAFAQVSKNN---TVAHLEPDHVK 118
++ ++ CY+ + G +LP N THI++A ++++ T+ PDH
Sbjct: 11 EHRRVICYHQTLCPNRGDYVSVLPLVKNNTGVTHIIIAAFHLNEDPGHITLNDDPPDHEM 70
Query: 119 Y---YRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDG 175
Y + +V +K +KV+ + A G++ + + + +L + H LDG
Sbjct: 71 YNPLWAEVPVLK--RSGVKVMGMLGGAAQGSYRCLDGDQEKFERYYQPLLAMVRRHQLDG 128
Query: 176 IDLDWE----FPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDV 231
+DLD E PG +L+ +LK L F++T+A
Sbjct: 129 LDLDVEEEMSLPG------------IIRLIDRLKLDLGDDFIITLA-------------- 162
Query: 232 PLMGRLVDFVSIMGYDYHS 250
P+ L+ ++ G+DY
Sbjct: 163 PVAAALLGIGNLSGFDYRQ 181
>pdb|1EDT|A Chain A, Crystal Structure Of Endo-Beta-N-Acetylglucosaminidase H
At 1.9 Angstroms Resolution: Active Site Geometry And
Substrate Recognition
Length = 271
Score = 32.7 bits (73), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 65/154 (42%), Gaps = 22/154 (14%)
Query: 128 LLNPNLKVLISVTDAGTG-NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP--- 183
L +KVL+SV G FA S +A AF++ + + + ++ LDG+D D E+
Sbjct: 79 LQQQGIKVLLSVLGNHQGAGFANFPSQQAAS-AFAKQLSDAVAKYGLDGVDFDDEYAEYG 137
Query: 184 --GWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241
G PN S F L+ L+ + + + + GP R L VD
Sbjct: 138 NNGTAQPNDSS----FVHLVTALRANMPDKIISLYNI---GPAASR-----LSYGGVDVS 185
Query: 242 SIMGYDYHSY--IWYLPVLG-PNAPLYPAVTDQG 272
Y ++ Y W +P + P A L PA + G
Sbjct: 186 DKFDYAWNPYYGTWQVPGIALPKAQLSPAAVEIG 219
>pdb|1C90|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
pdb|1C90|B Chain B, Endo-Beta-N-Acetylglucosaminidase H, E132q Mutant
Length = 265
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 22/154 (14%)
Query: 128 LLNPNLKVLISVTDAGTG-NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP--- 183
L +KVL+SV G FA S +A AF++ + + + ++ LDG+D D ++
Sbjct: 74 LQQQGIKVLLSVLGNHQGAGFANFPSQQAAS-AFAKQLSDAVAKYGLDGVDFDDQYAEYG 132
Query: 184 --GWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241
G PN S F L+ L+ + + + + GP R L VD
Sbjct: 133 NNGTAQPNDSS----FVHLVTALRANMPDKIISLYNI---GPAASR-----LSYGGVDVS 180
Query: 242 SIMGYDYHSY--IWYLPVLG-PNAPLYPAVTDQG 272
Y ++ Y W +P + P A L PA + G
Sbjct: 181 DKFDYAWNPYYGTWQVPGIALPKAQLSPAAVEIG 214
>pdb|1C8X|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130e Mutant
Length = 265
Score = 30.8 bits (68), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 22/154 (14%)
Query: 128 LLNPNLKVLISVTDAGTG-NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP--- 183
L +KVL+SV G FA S +A AF++ + + + ++ LDG+D + E+
Sbjct: 74 LQQQGIKVLLSVLGNHQGAGFANFPSQQAAS-AFAKQLSDAVAKYGLDGVDFEDEYAEYG 132
Query: 184 --GWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241
G PN S F L+ L+ + + + + GP R L VD
Sbjct: 133 NNGTAQPNDSS----FVHLVTALRANMPDKIISLYNI---GPAASR-----LSYGGVDVS 180
Query: 242 SIMGYDYHSY--IWYLPVLG-PNAPLYPAVTDQG 272
Y ++ Y W +P + P A L PA + G
Sbjct: 181 DKFDYAWNPYYGTWQVPGIALPKAQLSPAAVEIG 214
>pdb|1C91|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132d
Length = 265
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 22/154 (14%)
Query: 128 LLNPNLKVLISVTDAGTG-NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP--- 183
L +KVL+SV G FA S +A AF++ + + + ++ LDG+D D ++
Sbjct: 74 LQQQGIKVLLSVLGNHQGAGFANFPSQQAAS-AFAKQLSDAVAKYGLDGVDFDDDYAEYG 132
Query: 184 --GWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241
G PN S F L+ L+ + + + + GP R L VD
Sbjct: 133 NNGTAQPNDSS----FVHLVTALRANMPDKIISLYNI---GPAASR-----LSYGGVDVS 180
Query: 242 SIMGYDYHSY--IWYLPVLG-PNAPLYPAVTDQG 272
Y ++ Y W +P + P A L PA + G
Sbjct: 181 DKFDYAWNPYYGTWQVPGIALPKAQLSPAAVEIG 214
>pdb|1C3F|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130n Mutant
Length = 265
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 65/154 (42%), Gaps = 22/154 (14%)
Query: 128 LLNPNLKVLISVTDAGTG-NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP--- 183
L +KVL+SV G FA S +A AF++ + + + ++ LDG+D + E+
Sbjct: 74 LQQQGIKVLLSVLGNHQGAGFANFPSQQAAS-AFAKQLSDAVAKYGLDGVDFNDEYAEYG 132
Query: 184 --GWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241
G PN S F L+ L+ + + + + GP R L VD
Sbjct: 133 NNGTAQPNDSS----FVHLVTALRANMPDKIISLYNI---GPAASR-----LSYGGVDVS 180
Query: 242 SIMGYDYHSY--IWYLPVLG-PNAPLYPAVTDQG 272
Y ++ Y W +P + P A L PA + G
Sbjct: 181 DKFDYAWNPYYGTWQVPGIALPKAQLSPAAVEIG 214
>pdb|2EBN|A Chain A, Crystal Structure Of Endo-Beta-N-Acetylglucosaminidase F1,
An Alpha(Slash)beta-Barrel Enzyme Adapted For A Complex
Substrate
Length = 289
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 14/90 (15%)
Query: 103 VSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTD----AGTGNFAKAVSTRANRL 158
VS N V HL + KY + L + +KV++S+ +G N + A RA
Sbjct: 60 VSNNPNVQHLLTNRAKYLK-----PLQDKGIKVILSILGNHDRSGIANLSTA---RAK-- 109
Query: 159 AFSESILEFLIEHNLDGIDLDWEFPGWPGP 188
AF++ + +NLDG+ D E+ + P
Sbjct: 110 AFAQELKNTCDLYNLDGVFFDDEYSAYQTP 139
>pdb|1C92|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, E132a Mutant
Length = 265
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 128 LLNPNLKVLISVTDAGTG-NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP--- 183
L +KVL+SV G FA S +A AF++ + + + ++ LDG+D D +
Sbjct: 74 LQQQGIKVLLSVLGNHQGAGFANFPSQQAAS-AFAKQLSDAVAKYGLDGVDFDDAYAEYG 132
Query: 184 --GWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241
G PN S F L+ L+ + + + + GP R L VD
Sbjct: 133 NNGTAQPNDSS----FVHLVTALRANMPDKIISLYNI---GPAASR-----LSYGGVDVS 180
Query: 242 SIMGYDYHSY--IWYLPVLG-PNAPLYPAVTDQG 272
Y ++ Y W +P + P A L PA + G
Sbjct: 181 DKFDYAWNPYYGTWQVPGIALPKAQLSPAAVEIG 214
>pdb|1C8Y|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130a Mutant
Length = 265
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/154 (26%), Positives = 64/154 (41%), Gaps = 22/154 (14%)
Query: 128 LLNPNLKVLISVTDAGTG-NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP--- 183
L +KVL+SV G FA S +A AF++ + + + ++ LDG+D E+
Sbjct: 74 LQQQGIKVLLSVLGNHQGAGFANFPSQQAAS-AFAKQLSDAVAKYGLDGVDFADEYAEYG 132
Query: 184 --GWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241
G PN S F L+ L+ + + + + GP R L VD
Sbjct: 133 NNGTAQPNDSS----FVHLVTALRANMPDKIISLYNI---GPAASR-----LSYGGVDVS 180
Query: 242 SIMGYDYHSY--IWYLPVLG-PNAPLYPAVTDQG 272
Y ++ Y W +P + P A L PA + G
Sbjct: 181 DKFDYAWNPYYGTWQVPGIALPKAQLSPAAVEIG 214
>pdb|2OKC|A Chain A, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
pdb|2OKC|B Chain B, Crystal Structure Of Type I Restriction Enzyme Stysji M
Protein (np_813429.1) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.20 A Resolution
Length = 445
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 331 GFVDYIDTVAFL----RDPDTIQIFDKNTSVPYAYRGDQWISFD 370
GF DYI + +L D + ++ F + +++P Y+ I+FD
Sbjct: 29 GFTDYITQLTYLLFLKXDAENVEXFGEESAIPTGYQWADLIAFD 72
>pdb|1C93|A Chain A, Endo-Beta-N-Acetylglucosaminidase H, D130nE132Q DOUBLE
Mutant
Length = 265
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 22/154 (14%)
Query: 128 LLNPNLKVLISVTDAGTG-NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP--- 183
L +KVL+SV G FA S +A AF++ + + + ++ LDG+D + ++
Sbjct: 74 LQQQGIKVLLSVLGNHQGAGFANFPSQQAAS-AFAKQLSDAVAKYGLDGVDFNDQYAEYG 132
Query: 184 --GWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241
G PN S F L+ L+ + + + + GP R L VD
Sbjct: 133 NNGTAQPNDSS----FVHLVTALRANMPDKIISLYNI---GPAASR-----LSYGGVDVS 180
Query: 242 SIMGYDYHSY--IWYLPVLG-PNAPLYPAVTDQG 272
Y ++ Y W +P + P A L PA + G
Sbjct: 181 DKFDYAWNPYYGTWQVPGIALPKAQLSPAAVEIG 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,066,272
Number of Sequences: 62578
Number of extensions: 630336
Number of successful extensions: 1470
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 83
length of query: 424
length of database: 14,973,337
effective HSP length: 101
effective length of query: 323
effective length of database: 8,652,959
effective search space: 2794905757
effective search space used: 2794905757
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)