Query psy1028
Match_columns 424
No_of_seqs 237 out of 1642
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 22:24:07 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1028.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1028hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02872 GH18_chitolectin_chito 100.0 4.6E-73 1E-77 560.2 36.4 346 70-419 1-362 (362)
2 cd02873 GH18_IDGF The IDGF's ( 100.0 4.2E-68 9.2E-73 529.1 36.9 345 69-419 1-413 (413)
3 smart00636 Glyco_18 Glycosyl h 100.0 2.9E-63 6.3E-68 485.6 33.2 318 69-398 1-334 (334)
4 COG3325 ChiA Chitinase [Carboh 100.0 2.5E-63 5.4E-68 471.2 28.2 346 64-421 34-438 (441)
5 cd02878 GH18_zymocin_alpha Zym 100.0 1.1E-62 2.5E-67 480.6 32.8 319 69-398 1-345 (345)
6 cd02879 GH18_plant_chitinase_c 100.0 2.8E-62 6.1E-67 468.8 31.8 278 68-401 3-296 (299)
7 KOG2806|consensus 100.0 5.6E-61 1.2E-65 479.2 32.3 345 63-419 53-420 (432)
8 cd06548 GH18_chitinase The GH1 100.0 7.2E-61 1.6E-65 464.9 31.5 286 70-398 1-322 (322)
9 PF00704 Glyco_hydro_18: Glyco 100.0 1.4E-56 3.1E-61 440.1 28.7 323 68-398 1-343 (343)
10 cd02876 GH18_SI-CLP Stabilin-1 100.0 2.2E-56 4.7E-61 433.0 25.8 295 69-400 4-312 (318)
11 cd02875 GH18_chitobiase Chitob 100.0 1.4E-53 3E-58 417.3 33.3 307 66-418 34-357 (358)
12 cd02874 GH18_CFLE_spore_hydrol 100.0 1.3E-53 2.9E-58 413.1 26.3 290 69-401 3-308 (313)
13 cd06549 GH18_trifunctional GH1 100.0 1.4E-49 3E-54 381.2 24.1 285 70-400 2-295 (298)
14 cd06545 GH18_3CO4_chitinase Th 100.0 8.9E-48 1.9E-52 360.9 26.2 251 70-415 1-253 (253)
15 COG3858 Predicted glycosyl hyd 100.0 2.2E-37 4.7E-42 293.7 23.9 293 68-401 102-413 (423)
16 cd00598 GH18_chitinase-like Th 100.0 9.9E-37 2.1E-41 278.6 23.0 174 70-247 1-177 (210)
17 cd06546 GH18_CTS3_chitinase GH 100.0 6.8E-34 1.5E-38 265.7 25.4 199 69-302 1-217 (256)
18 cd02871 GH18_chitinase_D-like 100.0 5.4E-32 1.2E-36 261.0 27.5 215 68-303 1-248 (312)
19 cd06544 GH18_narbonin Narbonin 100.0 3.4E-32 7.3E-37 252.6 21.3 200 82-308 12-222 (253)
20 KOG2091|consensus 100.0 5.2E-31 1.1E-35 239.1 18.4 292 67-398 78-384 (392)
21 cd06542 GH18_EndoS-like Endo-b 99.9 1.3E-25 2.8E-30 211.2 21.7 245 69-419 2-254 (255)
22 cd02877 GH18_hevamine_XipI_cla 99.9 8.2E-22 1.8E-26 185.7 20.8 216 90-400 22-270 (280)
23 cd06543 GH18_PF-ChiA-like PF-C 99.9 8.4E-22 1.8E-26 186.9 17.8 153 90-251 23-184 (294)
24 COG3469 Chitinase [Carbohydrat 99.8 2.1E-18 4.6E-23 152.8 18.3 179 64-251 22-215 (332)
25 KOG4701|consensus 99.1 5.2E-09 1.1E-13 98.5 17.1 199 67-302 26-256 (568)
26 cd06547 GH85_ENGase Endo-beta- 98.7 1.8E-07 4E-12 90.8 12.4 153 123-308 51-216 (339)
27 PF11340 DUF3142: Protein of u 98.1 5.9E-05 1.3E-09 65.5 12.6 84 153-246 22-107 (181)
28 PF03644 Glyco_hydro_85: Glyco 98.0 2.3E-05 5.1E-10 75.4 9.0 152 123-306 47-209 (311)
29 PF02638 DUF187: Glycosyl hydr 97.9 0.00014 3.1E-09 70.2 12.2 131 152-305 134-299 (311)
30 PF13200 DUF4015: Putative gly 97.6 0.0027 5.8E-08 60.9 16.0 104 158-264 123-241 (316)
31 KOG2331|consensus 96.9 0.0096 2.1E-07 57.9 11.1 88 123-216 116-210 (526)
32 PF14883 GHL13: Hypothetical g 95.9 0.23 5E-06 46.6 13.6 193 91-309 29-267 (294)
33 cd04734 OYE_like_3_FMN Old yel 94.2 1.4 3E-05 43.2 14.3 150 94-245 48-250 (343)
34 cd02930 DCR_FMN 2,4-dienoyl-Co 93.9 1.9 4.2E-05 42.5 14.7 164 68-245 33-245 (353)
35 cd04747 OYE_like_5_FMN Old yel 93.6 3.8 8.3E-05 40.5 16.0 101 118-220 78-220 (361)
36 cd02932 OYE_YqiM_FMN Old yello 93.5 3.1 6.7E-05 40.7 15.2 128 92-221 46-231 (336)
37 TIGR01370 cysRS possible cyste 93.1 0.9 2E-05 43.8 10.4 88 152-245 141-236 (315)
38 cd04735 OYE_like_4_FMN Old yel 93.0 3.5 7.5E-05 40.7 14.8 128 117-247 77-258 (353)
39 cd02929 TMADH_HD_FMN Trimethyl 92.4 2.5 5.5E-05 41.9 13.0 152 92-245 51-259 (370)
40 PRK14581 hmsF outer membrane N 91.6 2.3 5E-05 45.3 12.1 195 91-308 346-614 (672)
41 PF14871 GHL6: Hypothetical gl 91.2 1 2.2E-05 37.7 7.3 62 118-180 44-132 (132)
42 PRK10605 N-ethylmaleimide redu 90.7 12 0.00025 37.1 15.5 148 94-245 50-270 (362)
43 cd04733 OYE_like_2_FMN Old yel 90.4 1.6 3.4E-05 42.8 9.1 126 118-246 82-258 (338)
44 cd02803 OYE_like_FMN_family Ol 90.3 3 6.5E-05 40.5 11.0 152 93-247 47-251 (327)
45 cd02933 OYE_like_FMN Old yello 90.2 5.4 0.00012 39.1 12.6 123 96-221 50-228 (338)
46 COG1306 Uncharacterized conser 89.9 1.1 2.4E-05 42.1 6.9 97 161-263 198-310 (400)
47 cd02810 DHOD_DHPD_FMN Dihydroo 88.8 3.8 8.1E-05 39.1 10.2 111 117-245 83-197 (289)
48 COG1902 NemA NADH:flavin oxido 88.7 13 0.00027 36.9 13.9 129 117-248 82-262 (363)
49 PRK13523 NADPH dehydrogenase N 88.5 13 0.00029 36.3 13.9 161 68-245 37-248 (337)
50 PF00724 Oxidored_FMN: NADH:fl 87.9 16 0.00034 35.9 14.1 128 93-223 50-228 (341)
51 PF13199 Glyco_hydro_66: Glyco 86.4 2.1 4.6E-05 44.6 7.3 63 152-216 238-306 (559)
52 COG4724 Endo-beta-N-acetylgluc 86.4 2 4.3E-05 42.0 6.4 82 123-209 132-220 (553)
53 PRK14582 pgaB outer membrane N 86.1 1.8 3.9E-05 46.1 6.7 93 195-308 512-614 (671)
54 TIGR03849 arch_ComA phosphosul 85.8 27 0.00058 32.2 13.2 146 118-302 41-194 (237)
55 COG1649 Uncharacterized protei 85.7 1.9 4.2E-05 43.0 6.2 92 154-246 181-307 (418)
56 cd02931 ER_like_FMN Enoate red 84.9 5.7 0.00012 39.6 9.3 101 118-220 83-227 (382)
57 TIGR02402 trehalose_TreZ malto 84.3 3.5 7.7E-05 43.1 7.8 83 118-209 160-266 (542)
58 TIGR02104 pulA_typeI pullulana 83.9 10 0.00022 40.4 11.2 64 118-182 229-322 (605)
59 PRK12568 glycogen branching en 83.6 12 0.00025 40.5 11.3 61 118-179 319-408 (730)
60 PRK05402 glycogen branching en 83.2 12 0.00026 40.8 11.6 62 118-180 315-405 (726)
61 TIGR01515 branching_enzym alph 81.9 18 0.00038 38.6 12.0 62 118-180 206-296 (613)
62 PF02065 Melibiase: Melibiase; 81.6 8.3 0.00018 38.6 8.9 101 118-220 104-236 (394)
63 PLN02411 12-oxophytodienoate r 80.7 10 0.00022 38.0 9.2 63 156-221 163-241 (391)
64 TIGR02103 pullul_strch alpha-1 79.2 13 0.00029 41.1 10.2 31 153-183 470-500 (898)
65 TIGR02102 pullulan_Gpos pullul 79.0 13 0.00027 42.3 10.0 81 118-207 555-662 (1111)
66 PRK08255 salicylyl-CoA 5-hydro 78.5 17 0.00037 39.9 10.8 152 92-245 444-659 (765)
67 PRK10550 tRNA-dihydrouridine s 78.1 12 0.00026 36.2 8.5 98 132-244 62-168 (312)
68 PRK14706 glycogen branching en 76.8 29 0.00062 37.2 11.6 62 118-180 217-307 (639)
69 cd04740 DHOD_1B_like Dihydroor 74.3 45 0.00098 31.8 11.4 86 117-220 75-163 (296)
70 PRK07259 dihydroorotate dehydr 74.1 29 0.00063 33.2 10.1 86 117-220 77-166 (301)
71 PRK12313 glycogen branching en 74.1 42 0.00092 35.9 12.2 61 118-179 220-309 (633)
72 PLN03244 alpha-amylase; Provis 73.7 38 0.00081 36.9 11.3 61 118-179 441-531 (872)
73 PLN02960 alpha-amylase 73.7 22 0.00047 39.2 9.7 61 118-179 466-556 (897)
74 PRK14705 glycogen branching en 73.2 30 0.00066 39.7 11.1 62 118-180 815-905 (1224)
75 PF07364 DUF1485: Protein of u 71.9 36 0.00078 32.6 9.9 110 120-244 47-158 (292)
76 PF02679 ComA: (2R)-phospho-3- 70.4 71 0.0015 29.7 11.1 145 118-302 54-206 (244)
77 PF00834 Ribul_P_3_epim: Ribul 69.9 15 0.00032 33.1 6.5 64 166-247 74-137 (201)
78 PLN02495 oxidoreductase, actin 69.9 49 0.0011 33.0 10.7 87 116-217 97-190 (385)
79 cd02801 DUS_like_FMN Dihydrour 69.7 20 0.00044 32.6 7.6 101 129-245 51-159 (231)
80 TIGR00737 nifR3_yhdG putative 68.0 52 0.0011 31.8 10.4 97 131-244 61-167 (319)
81 TIGR02100 glgX_debranch glycog 67.6 24 0.00052 38.1 8.6 86 118-207 245-366 (688)
82 PRK05286 dihydroorotate dehydr 67.6 68 0.0015 31.4 11.2 115 118-245 126-246 (344)
83 KOG3111|consensus 66.5 25 0.00054 31.2 6.8 65 165-247 80-144 (224)
84 PLN02877 alpha-amylase/limit d 66.2 45 0.00098 37.3 10.3 31 154-184 534-564 (970)
85 cd06591 GH31_xylosidase_XylS X 66.2 40 0.00087 32.6 9.2 33 151-183 128-160 (319)
86 PF14885 GHL15: Hypothetical g 64.2 9.4 0.0002 28.7 3.4 35 146-180 40-75 (79)
87 cd06592 GH31_glucosidase_KIAA1 64.1 33 0.00071 33.0 8.1 33 151-183 134-166 (303)
88 PRK03705 glycogen debranching 64.0 27 0.00059 37.5 8.0 64 118-182 242-339 (658)
89 PRK10785 maltodextrin glucosid 63.0 32 0.0007 36.5 8.4 54 152-209 303-361 (598)
90 PF02057 Glyco_hydro_59: Glyco 62.7 20 0.00044 38.0 6.6 81 118-209 113-198 (669)
91 PF14488 DUF4434: Domain of un 62.6 1E+02 0.0022 26.7 12.4 90 91-185 32-133 (166)
92 PLN02447 1,4-alpha-glucan-bran 61.8 76 0.0016 34.6 10.9 61 118-179 300-390 (758)
93 PRK08005 epimerase; Validated 60.5 32 0.00068 31.2 6.7 65 165-247 74-138 (210)
94 TIGR02456 treS_nterm trehalose 60.2 63 0.0014 33.9 9.9 28 152-180 171-198 (539)
95 TIGR01037 pyrD_sub1_fam dihydr 60.2 1E+02 0.0022 29.4 10.7 106 118-244 77-189 (300)
96 PF07745 Glyco_hydro_53: Glyco 59.8 22 0.00048 34.6 6.0 164 115-311 56-245 (332)
97 cd02940 DHPD_FMN Dihydropyrimi 59.2 1.2E+02 0.0026 29.0 10.9 87 118-220 85-177 (299)
98 PF08869 XisI: XisI protein; 59.0 6.9 0.00015 31.5 2.0 21 280-300 77-97 (111)
99 cd06600 GH31_MGAM-like This fa 58.7 52 0.0011 31.8 8.5 33 151-183 129-161 (317)
100 cd06602 GH31_MGAM_SI_GAA This 57.6 69 0.0015 31.3 9.1 33 151-183 134-166 (339)
101 PRK08091 ribulose-phosphate 3- 56.9 44 0.00095 30.7 7.1 65 165-247 84-150 (228)
102 COG3867 Arabinogalactan endo-1 55.8 1.9E+02 0.0042 27.7 13.3 85 130-218 115-222 (403)
103 COG5185 HEC1 Protein involved 54.6 15 0.00032 36.9 3.7 63 149-218 98-160 (622)
104 cd04738 DHOD_2_like Dihydrooro 54.0 1.9E+02 0.004 28.1 11.5 113 118-245 116-237 (327)
105 PRK08318 dihydropyrimidine deh 53.3 1.2E+02 0.0026 30.5 10.4 87 118-220 85-177 (420)
106 KOG1552|consensus 52.0 24 0.00053 32.8 4.6 47 240-298 88-134 (258)
107 TIGR00262 trpA tryptophan synt 51.8 2.1E+02 0.0045 26.8 14.4 150 67-246 9-172 (256)
108 cd04741 DHOD_1A_like Dihydroor 51.5 1.2E+02 0.0026 29.0 9.5 89 116-221 73-167 (294)
109 PF10566 Glyco_hydro_97: Glyco 50.2 1.1E+02 0.0024 29.0 8.8 58 118-183 73-130 (273)
110 PRK08745 ribulose-phosphate 3- 49.6 58 0.0013 29.8 6.7 64 166-247 79-142 (223)
111 PRK02506 dihydroorotate dehydr 49.2 1.4E+02 0.003 28.8 9.6 89 115-220 75-166 (310)
112 PF14587 Glyco_hydr_30_2: O-Gl 48.6 41 0.00089 33.4 5.8 109 104-218 93-224 (384)
113 cd04739 DHOD_like Dihydroorota 48.4 1.2E+02 0.0025 29.5 9.0 85 116-216 84-170 (325)
114 PF03328 HpcH_HpaI: HpcH/HpaI 47.4 70 0.0015 29.0 7.0 78 164-243 13-90 (221)
115 PRK09441 cytoplasmic alpha-amy 47.0 61 0.0013 33.3 7.2 50 152-209 206-255 (479)
116 cd06589 GH31 The enzymes of gl 46.9 67 0.0014 30.1 6.9 48 122-184 71-118 (265)
117 PRK09722 allulose-6-phosphate 46.9 76 0.0016 29.2 7.0 65 166-247 76-140 (229)
118 PRK08883 ribulose-phosphate 3- 46.8 69 0.0015 29.2 6.7 64 166-247 75-138 (220)
119 cd06599 GH31_glycosidase_Aec37 46.0 68 0.0015 31.0 7.0 32 152-183 138-169 (317)
120 PTZ00170 D-ribulose-5-phosphat 45.9 2E+02 0.0043 26.3 9.7 111 100-247 35-148 (228)
121 cd04724 Tryptophan_synthase_al 44.2 2.6E+02 0.0056 25.8 11.0 97 118-246 63-161 (242)
122 CHL00200 trpA tryptophan synth 43.3 2.9E+02 0.0062 26.0 10.5 182 67-300 14-209 (263)
123 COG0296 GlgB 1,4-alpha-glucan 43.0 84 0.0018 33.4 7.4 63 117-180 213-304 (628)
124 PRK07565 dihydroorotate dehydr 42.9 1.9E+02 0.004 28.2 9.6 84 116-215 86-171 (334)
125 COG2342 Predicted extracellula 42.8 77 0.0017 29.9 6.3 83 159-245 126-217 (300)
126 TIGR02803 ExbD_1 TonB system t 42.3 1.6E+02 0.0035 23.8 7.7 64 102-178 53-118 (122)
127 cd04722 TIM_phosphate_binding 42.1 2.2E+02 0.0047 24.3 11.0 69 165-246 77-145 (200)
128 COG0036 Rpe Pentose-5-phosphat 41.6 92 0.002 28.4 6.5 66 164-247 76-141 (220)
129 COG1891 Uncharacterized protei 40.9 1.8E+02 0.0038 25.6 7.7 147 193-390 34-184 (235)
130 PF14307 Glyco_tran_WbsX: Glyc 40.9 56 0.0012 32.0 5.6 42 370-420 55-96 (345)
131 PF04914 DltD_C: DltD C-termin 40.1 72 0.0016 26.5 5.3 59 118-178 36-95 (130)
132 KOG0622|consensus 40.1 1.5E+02 0.0033 29.6 8.2 78 120-209 154-238 (448)
133 cd06598 GH31_transferase_CtsZ 39.9 1.3E+02 0.0028 29.1 7.9 31 152-183 135-165 (317)
134 PF07582 AP_endonuc_2_N: AP en 37.6 82 0.0018 21.9 4.3 41 162-208 3-44 (55)
135 PRK09505 malS alpha-amylase; R 37.4 80 0.0017 34.1 6.4 29 153-181 435-463 (683)
136 PF01120 Alpha_L_fucos: Alpha- 37.1 4.1E+02 0.0089 26.0 11.0 89 118-215 138-242 (346)
137 cd06522 GH25_AtlA-like AtlA is 37.0 2.9E+02 0.0064 24.3 9.9 44 161-208 76-122 (192)
138 PRK10558 alpha-dehydro-beta-de 35.9 62 0.0014 30.3 4.8 48 163-220 31-78 (256)
139 PF02581 TMP-TENI: Thiamine mo 35.9 1.7E+02 0.0038 25.4 7.5 69 154-245 38-123 (180)
140 PRK11613 folP dihydropteroate 35.4 3.9E+02 0.0085 25.4 10.1 80 136-219 17-98 (282)
141 PRK10128 2-keto-3-deoxy-L-rham 35.2 68 0.0015 30.3 4.9 47 164-220 31-77 (267)
142 cd00019 AP2Ec AP endonuclease 34.4 1.3E+02 0.0029 28.1 6.9 23 161-183 12-34 (279)
143 PLN02334 ribulose-phosphate 3- 34.2 1.9E+02 0.0041 26.3 7.7 68 164-247 80-149 (229)
144 PRK14192 bifunctional 5,10-met 33.6 2.5E+02 0.0055 26.6 8.6 57 156-220 46-103 (283)
145 TIGR00742 yjbN tRNA dihydrouri 32.7 1.6E+02 0.0035 28.5 7.2 74 131-219 53-133 (318)
146 TIGR03239 GarL 2-dehydro-3-deo 32.6 80 0.0017 29.4 4.9 48 163-220 24-71 (249)
147 COG0411 LivG ABC-type branched 32.1 73 0.0016 29.6 4.4 46 189-247 181-226 (250)
148 PF05763 DUF835: Protein of un 31.5 1.4E+02 0.0031 24.9 5.8 64 152-220 55-120 (136)
149 cd06593 GH31_xylosidase_YicI Y 31.3 3E+02 0.0064 26.3 8.8 30 152-182 130-159 (308)
150 PF02055 Glyco_hydro_30: O-Gly 31.2 2.2E+02 0.0048 29.5 8.2 129 119-247 155-312 (496)
151 cd06594 GH31_glucosidase_YihQ 31.2 1.6E+02 0.0035 28.5 6.9 31 152-182 136-166 (317)
152 PRK11815 tRNA-dihydrouridine s 30.6 1.4E+02 0.0029 29.2 6.4 64 132-209 64-133 (333)
153 smart00633 Glyco_10 Glycosyl h 30.6 4.4E+02 0.0095 24.3 10.0 82 120-215 106-188 (254)
154 cd06595 GH31_xylosidase_XylS-l 30.2 1.7E+02 0.0038 27.8 6.9 61 121-183 78-160 (292)
155 smart00812 Alpha_L_fucos Alpha 29.9 3.2E+02 0.0069 27.3 8.9 83 118-208 128-223 (384)
156 PF00128 Alpha-amylase: Alpha 29.7 1.4E+02 0.0031 27.8 6.4 55 152-216 142-196 (316)
157 TIGR02631 xylA_Arthro xylose i 29.7 1.3E+02 0.0029 29.9 6.2 69 141-219 18-89 (382)
158 TIGR01305 GMP_reduct_1 guanosi 29.6 3.3E+02 0.0071 26.7 8.5 54 132-209 95-149 (343)
159 COG3410 Uncharacterized conser 29.6 1.2E+02 0.0026 26.3 4.9 46 152-205 145-190 (191)
160 TIGR03234 OH-pyruv-isom hydrox 29.0 91 0.002 28.7 4.7 21 161-181 16-36 (254)
161 PF01207 Dus: Dihydrouridine s 28.9 1.4E+02 0.0031 28.7 6.1 104 126-245 47-159 (309)
162 PF10354 DUF2431: Domain of un 28.9 3.4E+02 0.0075 23.4 8.0 107 121-251 44-156 (166)
163 PF07999 RHSP: Retrotransposon 28.4 4.4E+02 0.0094 26.9 9.6 100 278-399 107-215 (439)
164 TIGR02801 tolR TolR protein. T 28.2 3.2E+02 0.0069 22.2 7.4 47 119-178 80-126 (129)
165 PRK05581 ribulose-phosphate 3- 28.0 3.5E+02 0.0076 24.1 8.3 64 166-247 78-141 (220)
166 PRK00071 nadD nicotinic acid m 27.9 4.3E+02 0.0093 23.4 9.3 99 133-244 34-134 (203)
167 PRK11267 biopolymer transport 27.8 3.6E+02 0.0077 22.5 7.7 65 102-179 67-133 (141)
168 PRK09856 fructoselysine 3-epim 27.6 4.9E+02 0.011 24.0 10.7 99 118-220 47-149 (275)
169 PRK11024 colicin uptake protei 27.4 3.5E+02 0.0075 22.5 7.6 50 117-179 88-137 (141)
170 TIGR01163 rpe ribulose-phospha 27.4 2.9E+02 0.0064 24.3 7.7 65 165-247 72-136 (210)
171 TIGR01036 pyrD_sub2 dihydrooro 27.2 5.3E+02 0.011 25.1 9.8 107 126-245 128-245 (335)
172 PRK14057 epimerase; Provisiona 27.1 2E+02 0.0043 26.9 6.4 65 168-247 94-164 (254)
173 PF01487 DHquinase_I: Type I 3 26.9 4.7E+02 0.01 23.5 9.7 74 131-221 112-185 (224)
174 PF12876 Cellulase-like: Sugar 26.8 83 0.0018 23.9 3.3 48 194-246 37-88 (88)
175 PRK09936 hypothetical protein; 26.5 5.8E+02 0.013 24.4 12.4 140 73-220 25-182 (296)
176 PRK13840 sucrose phosphorylase 26.4 1.8E+02 0.0039 30.1 6.6 57 151-209 166-224 (495)
177 PRK11177 phosphoenolpyruvate-p 26.3 4.9E+02 0.011 27.6 9.9 125 115-250 309-458 (575)
178 PF08885 GSCFA: GSCFA family; 26.2 1.9E+02 0.0041 27.0 6.2 50 120-170 154-209 (251)
179 cd00429 RPE Ribulose-5-phospha 25.9 3.5E+02 0.0077 23.7 7.9 65 165-247 73-137 (211)
180 PF00150 Cellulase: Cellulase 25.8 4.3E+02 0.0092 24.2 8.8 22 118-140 62-83 (281)
181 PRK14510 putative bifunctional 25.8 2.3E+02 0.005 33.1 7.9 64 118-183 247-346 (1221)
182 COG0429 Predicted hydrolase of 25.7 2.9E+02 0.0063 27.0 7.3 62 159-221 91-158 (345)
183 PRK05096 guanosine 5'-monophos 25.7 3.8E+02 0.0082 26.3 8.2 54 132-209 96-150 (346)
184 TIGR00542 hxl6Piso_put hexulos 25.5 1E+02 0.0022 28.9 4.4 51 161-215 18-69 (279)
185 PRK07535 methyltetrahydrofolat 25.4 5.6E+02 0.012 23.9 10.4 107 159-298 25-159 (261)
186 cd07321 Extradiol_Dioxygenase_ 24.9 80 0.0017 23.6 2.8 30 146-175 8-37 (77)
187 PRK08446 coproporphyrinogen II 23.8 3.8E+02 0.0083 26.2 8.2 58 121-182 99-157 (350)
188 PRK01222 N-(5'-phosphoribosyl) 23.7 1.7E+02 0.0037 26.4 5.3 40 162-207 166-208 (210)
189 PRK13125 trpA tryptophan synth 23.5 2.8E+02 0.006 25.6 6.8 66 163-246 92-160 (244)
190 PRK13209 L-xylulose 5-phosphat 23.5 1.3E+02 0.0028 28.1 4.8 49 161-216 23-75 (283)
191 cd00405 PRAI Phosphoribosylant 23.4 2.3E+02 0.0049 25.2 6.1 65 161-243 62-126 (203)
192 cd06604 GH31_glucosidase_II_Ma 23.2 4.4E+02 0.0096 25.6 8.5 31 152-183 130-160 (339)
193 PF09419 PGP_phosphatase: Mito 23.2 2.1E+02 0.0045 25.0 5.4 44 167-211 35-78 (168)
194 PRK10415 tRNA-dihydrouridine s 23.0 4.3E+02 0.0093 25.5 8.3 51 165-218 83-140 (321)
195 PF12138 Spherulin4: Spherulat 22.9 6.2E+02 0.014 23.6 11.8 107 118-243 54-166 (253)
196 COG0050 TufB GTPases - transla 22.8 1.4E+02 0.003 28.7 4.5 44 132-181 127-171 (394)
197 PRK13660 hypothetical protein; 22.7 4.4E+02 0.0094 23.3 7.4 82 157-249 28-113 (182)
198 PF07745 Glyco_hydro_53: Glyco 22.2 7.4E+02 0.016 24.2 9.8 73 124-213 161-233 (332)
199 COG0848 ExbD Biopolymer transp 22.2 4.7E+02 0.01 21.9 7.2 70 100-182 63-134 (137)
200 TIGR01769 GGGP geranylgeranylg 22.0 5E+02 0.011 23.4 7.9 73 153-246 6-78 (205)
201 PF01055 Glyco_hydro_31: Glyco 21.6 3.6E+02 0.0077 27.2 7.8 34 151-184 149-182 (441)
202 TIGR02311 HpaI 2,4-dihydroxyhe 21.6 1.8E+02 0.004 27.0 5.2 48 164-221 25-72 (249)
203 smart00733 Mterf Mitochondrial 21.5 82 0.0018 17.6 1.9 21 366-387 10-30 (31)
204 COG3589 Uncharacterized conser 20.9 5E+02 0.011 25.4 7.8 168 118-303 49-226 (360)
No 1
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=100.00 E-value=4.6e-73 Score=560.19 Aligned_cols=346 Identities=39% Similarity=0.774 Sum_probs=312.1
Q ss_pred EEEEEeCCCCC----CCCCCCCCCCCCccEEEEEEEEecCCCeEeecCCC---hhhHHHHHHHHHHhCCCceEEEEEe-c
Q psy1028 70 LFCYYSLPQNS----SGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPD---HVKYYRDVVAMKLLNPNLKVLISVT-D 141 (424)
Q Consensus 70 vvgY~~~~~~~----~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~---~~~~~~~~~~lk~~n~~~kvllsvg-~ 141 (424)
|+|||++|... ..|.+.+++.++||||+|+|+.++.+|++...++. ....++++.++|++||++||++||| +
T Consensus 1 v~~y~~~w~~~~~~~~~~~~~~i~~~~~Thv~y~f~~i~~~g~~~~~~~~~d~~~~~~~~~~~lk~~~p~lkvlisiGG~ 80 (362)
T cd02872 1 VVCYFTNWAQYRPGNGKFVPENIDPFLCTHIIYAFAGLNPDGNIIILDEWNDIDLGLYERFNALKEKNPNLKTLLAIGGW 80 (362)
T ss_pred CEEEECcchhcCCCCCCcChhHCCcccCCEEEEeeEEECCCCCEEecCchhhhhhhHHHHHHHHHhhCCCceEEEEEcCC
Confidence 68999996432 36899999999999999999999999988876542 3478889999999999999999999 4
Q ss_pred C-CCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC-C--CcEEEEE
Q psy1028 142 A-GTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-G--RFLMTVA 217 (424)
Q Consensus 142 ~-~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~--~~~ls~a 217 (424)
. ++..|+.++++++.|++||++|+++|++|+|||||||||+|...++.++ ++++|+.||++||++|+ . +++||++
T Consensus 81 ~~~~~~f~~~~~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~p~~~~~~~~-d~~~~~~ll~~lr~~l~~~~~~~~ls~a 159 (362)
T cd02872 81 NFGSAKFSAMAASPENRKTFIKSAIAFLRKYGFDGLDLDWEYPGQRGGPPE-DKENFVTLLKELREAFEPEAPRLLLTAA 159 (362)
T ss_pred CCCcchhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeeeeeeccccCCCCHH-HHHHHHHHHHHHHHHHHhhCcCeEEEEE
Confidence 3 3568999999999999999999999999999999999999986655677 99999999999999998 4 7999999
Q ss_pred ecCCccccccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCCCceE
Q psy1028 218 VAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLL 297 (424)
Q Consensus 218 v~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~Klv 297 (424)
+|+........+|+++|.+++|+|+||+||+|+. | ...+|+++||+....+......++++.+|++|++.|+|++||+
T Consensus 160 v~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~-~-~~~~g~~spl~~~~~~~~~~~~~~v~~~v~~~~~~gvp~~Klv 237 (362)
T cd02872 160 VSAGKETIDAAYDIPEISKYLDFINVMTYDFHGS-W-EGVTGHNSPLYAGSADTGDQKYLNVDYAIKYWLSKGAPPEKLV 237 (362)
T ss_pred ecCChHHHhhcCCHHHHhhhcceEEEecccCCCC-C-CCCCCCCCCCCCCCCCccccccccHHHHHHHHHHcCCCHHHeE
Confidence 9987665555799999999999999999999999 9 8899999999987665433345689999999999999999999
Q ss_pred eecccceeeeeecCCCCCCCCCccccCCCCC----CCcceehHHhhhhccCCCceEEEcCCCeeeEEEeCCEEEEECCHH
Q psy1028 298 LGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQWISFDNEP 373 (424)
Q Consensus 298 lGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g----~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y~~~~~~~i~ydd~~ 373 (424)
||||+||+.|++.+..++++++|+.|++..| ..|.++|.|||+.+ ..+++..||+.+++||+|++++||+|||++
T Consensus 238 lGlp~YG~~~~~~~~~~~~~g~~~~g~~~~g~~~~~~g~~~y~ei~~~~-~~~~~~~~D~~~~~~y~~~~~~~v~ydd~~ 316 (362)
T cd02872 238 LGIPTYGRSFTLASPSNTGVGAPASGPGTAGPYTREAGFLAYYEICEFL-KSGWTVVWDDEQKVPYAYKGNQWVGYDDEE 316 (362)
T ss_pred eccccccceeeecCCccCCCCCccCCCCCCCCCcCCCccchHHHHHHhh-cCCcEEEEeCCcceeEEEECCEEEEeCCHH
Confidence 9999999999999887888999998877655 67899999999988 778999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCceEEEeeccCCCCCCccCCCCchhHHHHHHhh
Q psy1028 374 SLAYKTEYLMSKGLAGAMVWCLNTDDYAAKYHTSPYPLIKRIKTVL 419 (424)
Q Consensus 374 Si~~K~~~a~~~glgGv~iW~l~~Dd~~g~cg~g~~~Ll~a~~~~l 419 (424)
|++.|++||+++||||+++|+|++||++|.||.|.||||++|++.|
T Consensus 317 Si~~K~~~~~~~~lgGv~iW~l~~DD~~g~cg~~~~pLl~~i~~~~ 362 (362)
T cd02872 317 SIALKVQYLKSKGLGGAMVWSIDLDDFRGTCGQGKYPLLNAINRAL 362 (362)
T ss_pred HHHHHHHHHHhCCCceEEEEeeecCcCCCccCCCCCcHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999875
No 2
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=100.00 E-value=4.2e-68 Score=529.12 Aligned_cols=345 Identities=28% Similarity=0.518 Sum_probs=286.5
Q ss_pred EEEEEEeCCC----CCCCCCCCCCCCCC--ccEEEEEEEEecCC-CeEeecCCCh---hhHHHHHHHHHHhCCCceEEEE
Q psy1028 69 QLFCYYSLPQ----NSSGLLPHQLNPNL--CTHILLAFAQVSKN-NTVAHLEPDH---VKYYRDVVAMKLLNPNLKVLIS 138 (424)
Q Consensus 69 ~vvgY~~~~~----~~~~~~~~~i~~~~--~Thv~~~f~~~~~~-g~~~~~~~~~---~~~~~~~~~lk~~n~~~kvlls 138 (424)
+|+|||++|. +...|.+++|+... ||||+|+|+.++++ +.+...+... ...++++.+||++||++|||+|
T Consensus 1 ~vvcyy~~~a~~r~~~~~~~~~~i~~~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~p~lKvllS 80 (413)
T cd02873 1 KLVCYYDSKSYLREGLAKMSLEDLEPALQFCTHLVYGYAGIDADTYKIKSLNEDLDLDKSHYRAITSLKRKYPHLKVLLS 80 (413)
T ss_pred CEEEEecchhhcCCCCCeeCHHHcCCccccCCeEEEEEEEEeCCCCEEEecCcccchhhhHHHHHHHHHhhCCCCeEEEe
Confidence 4899999953 33478899999865 99999999999985 4666554322 2678899999999999999999
Q ss_pred Ee-cCC------CCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCC------------------------
Q psy1028 139 VT-DAG------TGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPG------------------------ 187 (424)
Q Consensus 139 vg-~~~------~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~------------------------ 187 (424)
|| |.. +..|+.++++++.|++||+++++||++|+|||||||||+|...+
T Consensus 81 iGGw~~~~~~~~s~~fs~~~~~~~~R~~Fi~siv~~l~~~~fDGidiDWEyP~~~~~~~~g~~~~~~~~~~~~~~g~~~~ 160 (413)
T cd02873 81 VGGDRDTDEEGENEKYLLLLESSESRNAFINSAHSLLKTYGFDGLDLAWQFPKNKPKKVRGTFGSAWHSFKKLFTGDSVV 160 (413)
T ss_pred ecCCCCCCCcccchhhHHHhCCHHHHHHHHHHHHHHHHHcCCCCeEeeeeCCCCcccccccccchhhhhhhccccccccc
Confidence 99 433 45699999999999999999999999999999999999997431
Q ss_pred --CCchhhHHHHHHHHHHHHHHcC-CCcEEEEEecCCccccccccChhhhhccccEEEeeecccCCCccCCC-CCCCCCC
Q psy1028 188 --PNKSHEKRMFSKLLQQLKFTLS-GRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLP-VLGPNAP 263 (424)
Q Consensus 188 --~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~-~~g~~ap 263 (424)
..++ ++++|+.||++||++|+ .+++||+++++.... ...+|+++|+++|||||||+||+|+. |..+ .+++++|
T Consensus 161 ~~~~~~-d~~nf~~Ll~elr~~l~~~~~~ls~av~~~~~~-~~~~d~~~l~~~vD~inlMtYD~~g~-~~~~~~~~~~ap 237 (413)
T cd02873 161 DEKAAE-HKEQFTALVRELKNALRPDGLLLTLTVLPHVNS-TWYFDVPAIANNVDFVNLATFDFLTP-ERNPEEADYTAP 237 (413)
T ss_pred CCCChh-HHHHHHHHHHHHHHHhcccCcEEEEEecCCchh-ccccCHHHHhhcCCEEEEEEecccCC-CCCCCccCcCCc
Confidence 1367 99999999999999998 779999998754332 23589999999999999999999998 6232 5899999
Q ss_pred CCCCCCCCCCCccccHHHHHHHHHHcCCCCCceEeecccceeeeeecCCC-CCC--CCCccccCCCCC----CCcceehH
Q psy1028 264 LYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPD-STD--YGMPAADVGRIG----NQGFVDYI 336 (424)
Q Consensus 264 l~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~YG~~~~~~~~~-~~~--~~~~~~g~~~~g----~~g~~~y~ 336 (424)
|+..... ...++++.+|++|++.|+|++||+||||||||.|++.+.. +.+ ..++..|++..| +.|.++|.
T Consensus 238 L~~~~~~---~~~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~w~l~~~~~~~g~~~~~~~~g~~~~G~~~~~~g~l~y~ 314 (413)
T cd02873 238 IYELYER---NPHHNVDYQVKYWLNQGTPASKLNLGIATYGRAWKLTKDSGITGVPPVLETDGPGPAGPQTKTPGLLSWP 314 (413)
T ss_pred cCCCccc---cccccHHHHHHHHHHcCCCHHHeEEEEecceeeeEccCCCCCcCCCCCccCCCCCCCCCCcCCCccccHH
Confidence 9865422 2346999999999999999999999999999999988653 222 224556666555 67899999
Q ss_pred HhhhhccCC--------CceEEEcCCCe-eeEEEe-------CCEEEEECCHHHHHHHHHHHHhcCCceEEEeeccCCCC
Q psy1028 337 DTVAFLRDP--------DTIQIFDKNTS-VPYAYR-------GDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDY 400 (424)
Q Consensus 337 ~i~~~~~~~--------~~~~~~D~~~~-~~y~~~-------~~~~i~ydd~~Si~~K~~~a~~~glgGv~iW~l~~Dd~ 400 (424)
|||..+... .|+..||++.+ .+|+|. .++||+|||++|++.|++||+++||||+|+|++++||+
T Consensus 315 ei~~~~~~~~~~~g~~~~~~~~~d~~~~~~~y~y~~~d~~~~~~~wvsydd~~Si~~K~~y~~~~gLgGv~~W~l~~DD~ 394 (413)
T cd02873 315 EICSKLPNPANLKGADAPLRKVGDPTKRFGSYAYRPADENGEHGIWVSYEDPDTAANKAGYAKAKGLGGVALFDLSLDDF 394 (413)
T ss_pred HHHHhhccCccccccccceeEeecccccccceEEeccccCCCCCeEEEeCCHHHHHHHHHHHHhCCCceEEEEeeecCcC
Confidence 999877542 35678998876 489884 25799999999999999999999999999999999999
Q ss_pred CCccCCCCchhHHHHHHhh
Q psy1028 401 AAKYHTSPYPLIKRIKTVL 419 (424)
Q Consensus 401 ~g~cg~g~~~Ll~a~~~~l 419 (424)
+|.|+.+.+|||++|++.|
T Consensus 395 ~g~c~~~~~pll~~i~~~~ 413 (413)
T cd02873 395 RGQCTGDKFPILRSAKYRL 413 (413)
T ss_pred CCCcCCCCChHHHHHHhhC
Confidence 9999777999999999865
No 3
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=100.00 E-value=2.9e-63 Score=485.55 Aligned_cols=318 Identities=35% Similarity=0.669 Sum_probs=282.4
Q ss_pred EEEEEEeCCCCC-CCCCCCCCCCCCccEEEEEEEEecCCCeEeecCCChh-hHHHHHHHHHHhCCCceEEEEEe-cCCCC
Q psy1028 69 QLFCYYSLPQNS-SGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHV-KYYRDVVAMKLLNPNLKVLISVT-DAGTG 145 (424)
Q Consensus 69 ~vvgY~~~~~~~-~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~~~-~~~~~~~~lk~~n~~~kvllsvg-~~~~~ 145 (424)
+++|||++|... ..|.+.+++.++||||+|+|+.++++|++.+.++..+ ..+.++.++|+++|++|||++|| +..+.
T Consensus 1 ~~~~Y~~~w~~~~~~~~~~~~~~~~~thv~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~kvl~svgg~~~s~ 80 (334)
T smart00636 1 RVVGYFTNWGVYGRNFPVDDIPASKLTHIIYAFANIDPDGTVTIGDEWADIGNFGQLKALKKKNPGLKVLLSIGGWTESD 80 (334)
T ss_pred CEEEEECchhccCCCCChhHCCcccCcEEEEeeeeeCCCCCEeeCCcchhhhhHHHHHHHHHhCCCCEEEEEEeCCCCCc
Confidence 489999998632 3589999999999999999999999999988754333 46778999999999999999999 55567
Q ss_pred CchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC------CCcEEEEEec
Q psy1028 146 NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS------GRFLMTVAVA 219 (424)
Q Consensus 146 ~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~------~~~~ls~av~ 219 (424)
.|+.++.+++.|++|+++|+++|++|+|||||||||++... .+ ++.+|..||++||++|+ ++++||++++
T Consensus 81 ~f~~~~~~~~~r~~fi~~i~~~~~~~~~DGidiDwE~~~~~---~~-d~~~~~~ll~~lr~~l~~~~~~~~~~~lsi~v~ 156 (334)
T smart00636 81 NFSSMLSDPASRKKFIDSIVSFLKKYGFDGIDIDWEYPGAR---GD-DRENYTALLKELREALDKEGAEGKGYLLTIAVP 156 (334)
T ss_pred chhHHHCCHHHHHHHHHHHHHHHHHcCCCeEEECCcCCCCC---cc-HHHHHHHHHHHHHHHHHHhcccCCceEEEEEec
Confidence 89999999999999999999999999999999999999642 25 78899999999999997 3899999999
Q ss_pred CCccccccccC-hhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCCCceEe
Q psy1028 220 APGPIIDRAYD-VPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLL 298 (424)
Q Consensus 220 ~~~~~~~~~~d-~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~Klvl 298 (424)
+........++ +++|.+++|+|+||+||+|++ | +..+|++|||+....+. ..++++.++++|++.|+|++||+|
T Consensus 157 ~~~~~~~~~~~~~~~l~~~vD~v~vm~YD~~~~-~-~~~~g~~spl~~~~~~~---~~~~v~~~v~~~~~~gvp~~Klvl 231 (334)
T smart00636 157 AGPDKIDKGYGDLPAIAKYLDFINLMTYDFHGA-W-SNPTGHNAPLYAGPGDP---EKYNVDYAVKYYLCKGVPPSKLVL 231 (334)
T ss_pred CChHHHHhhhhhHHHHHhhCcEEEEeeeccCCC-C-CCCCCCCCcCCCCCCCC---CCccHHHHHHHHHHcCCCHHHeEE
Confidence 87654444578 599999999999999999999 9 78899999999766543 245899999999999999999999
Q ss_pred ecccceeeeeecCCCCCCCCCccccCCCCC----CCcceehHHhhhhccCCCceEEEcCCCeeeEEEe-C-CEEEEECCH
Q psy1028 299 GLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR-G-DQWISFDNE 372 (424)
Q Consensus 299 Glp~YG~~~~~~~~~~~~~~~~~~g~~~~g----~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y~~~-~-~~~i~ydd~ 372 (424)
|||+||+.|++.++.++++++|+.|++..| ..|.++|.|||+.+ +++..||+++.++|.|. + ++||+|||+
T Consensus 232 Gip~YG~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~y~ei~~~~---~~~~~~d~~~~~~y~~~~~~~~~v~ydd~ 308 (334)
T smart00636 232 GIPFYGRGWTLVDGSNNGPGAPFTGPATGGPGTWEGGVVDYREICKLL---GATVVWDDTAKAPYAYNPGTGQWVSYDDP 308 (334)
T ss_pred eeccccCccccCCCCcCCCCCcccCCCCCCCCCCcccchhHHHHHhhc---CcEEEEcCCCceeEEEECCCCEEEEcCCH
Confidence 999999999999888888999998876554 67899999999865 78999999999999997 4 599999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeeccCC
Q psy1028 373 PSLAYKTEYLMSKGLAGAMVWCLNTD 398 (424)
Q Consensus 373 ~Si~~K~~~a~~~glgGv~iW~l~~D 398 (424)
+|++.|++||+++||||+|+|+|++|
T Consensus 309 ~Si~~K~~~~~~~~lgGv~iW~l~~D 334 (334)
T smart00636 309 RSIKAKADYVKDKGLGGVMIWELDAD 334 (334)
T ss_pred HHHHHHHHHHHhCCCCeEEEEeecCC
Confidence 99999999999999999999999997
No 4
>COG3325 ChiA Chitinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-63 Score=471.17 Aligned_cols=346 Identities=26% Similarity=0.458 Sum_probs=283.2
Q ss_pred cCCCcEEEEEEeCCCC-C-CCCCCCCCCCCCccEEEEEEEEecCCCeEe-----ec--------------CC--C-hhhH
Q psy1028 64 AVDNYQLFCYYSLPQN-S-SGLLPHQLNPNLCTHILLAFAQVSKNNTVA-----HL--------------EP--D-HVKY 119 (424)
Q Consensus 64 ~~~~~~vvgY~~~~~~-~-~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~-----~~--------------~~--~-~~~~ 119 (424)
....+||+|||.+|.. . ..|.+.+||..++|||+|+|+.|+++|... .. ++ + ....
T Consensus 34 ~d~~~rvvgYY~sWs~~d~~~y~~~DIp~~qlTHInYAF~~I~~~g~~~~~~~~~~~~~~~~~~~~~~e~dp~~~~~~G~ 113 (441)
T COG3325 34 SDDQFKVVGYYTSWSQYDRQDYFPGDIPLDQLTHINYAFLDINSDGKSIESWVADEAALYGVPNIEGVELDPWSDPLKGH 113 (441)
T ss_pred CCCCceEEEEecccccCCCcccccccCCHHHhceeeEEEEEecCCCCccccccccchhhccccCcCceeeccccccccch
Confidence 3457899999999743 2 378999999999999999999999988421 00 11 1 2357
Q ss_pred HHHHHHHHHhCCCceEEEEEe-cCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCC-----CCchhh
Q psy1028 120 YRDVVAMKLLNPNLKVLISVT-DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPG-----PNKSHE 193 (424)
Q Consensus 120 ~~~~~~lk~~n~~~kvllsvg-~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~-----~~~~~~ 193 (424)
+..+..+|+++|++|+++||| |..|..|+.++.+.+.|++|++++++||++|+|||||||||||++.+ +.++ +
T Consensus 114 ~~~L~~lk~~~~d~k~l~SIGGWs~S~~F~~~aad~a~re~Fa~saVe~~r~~~FDGVDIDWEYP~~~~~~~~~~~~~-d 192 (441)
T COG3325 114 FGALFDLKATYPDLKTLISIGGWSDSGGFSDMAADDASRENFAKSAVEFMRTYGFDGVDIDWEYPGSGGDAGNCGRPK-D 192 (441)
T ss_pred HHHHHHHhhhCCCceEEEeecccccCCCcchhhcCHHHHHHHHHHHHHHHHhcCCCceeeccccCCCCCCCCCCCCcc-c
Confidence 889999999999999999999 88899999999999999999999999999999999999999998764 3467 9
Q ss_pred HHHHHHHHHHHHHHcC-------CCcEEEEEecCCccccccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCC
Q psy1028 194 KRMFSKLLQQLKFTLS-------GRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYP 266 (424)
Q Consensus 194 ~~~~~~~l~~Lr~~l~-------~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~ 266 (424)
.++|+.||++||++|. +.+.||+|.|+...... ..+..+++++|||||+|||||||. | ....|||++||.
T Consensus 193 ~~ny~~Ll~eLR~~LD~a~~edgr~Y~LTiA~~as~~~l~-~~~~~~~~~~vDyiNiMTYDf~G~-W-n~~~Gh~a~Ly~ 269 (441)
T COG3325 193 KANYVLLLQELRKKLDKAGVEDGRHYQLTIAAPASKDKLE-GLNHAEIAQYVDYINIMTYDFHGA-W-NETLGHHAALYG 269 (441)
T ss_pred HHHHHHHHHHHHHHHhhcccccCceEEEEEecCCchhhhh-cccHHHHHHHHhhhheeeeecccc-c-cccccccccccc
Confidence 9999999999999998 67999999999988776 789999999999999999999999 9 999999999998
Q ss_pred CCCCCCCCc-cccH------HHHHHHHHHcCCCCCceEeecccceeeeeecCCCCCCC-CCccccCC----CCC----CC
Q psy1028 267 AVTDQGYFK-SLNA------NWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY-GMPAADVG----RIG----NQ 330 (424)
Q Consensus 267 ~~~~~~~~~-~~~~------~~~~~~~~~~gvp~~KlvlGlp~YG~~~~~~~~~~~~~-~~~~~g~~----~~g----~~ 330 (424)
.+.++.... .+.+ ...++.....++||+|||||+|||||.|..++....+. .....+.. ..| ..
T Consensus 270 ~~~d~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~klvlG~p~YgRgw~~v~~~~~~~~~~~~q~~~n~g~~~Gtw~a~n 349 (441)
T COG3325 270 TPKDPPLANGGFYVDAEVDGIDWLEEGFAGDVPPSKLVLGMPFYGRGWNGVDGGSLGTCPGLYQGLDNSGIPKGTWEAGN 349 (441)
T ss_pred CCCCCccccCCeeEEEEechhHHHHhhhccCCCCceEEeeccccccccccccCcccCCCCCcccccCCCCCCCCcccccc
Confidence 777765433 2322 23556666778999999999999999999987754321 11111111 112 11
Q ss_pred cceeh---HHhh-hhccCCCceEEEcCCCeeeEEEe--CCEEEEECCHHHHHHHHHHHHhcCCceEEEeeccCCCCCCcc
Q psy1028 331 GFVDY---IDTV-AFLRDPDTIQIFDKNTSVPYAYR--GDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY 404 (424)
Q Consensus 331 g~~~y---~~i~-~~~~~~~~~~~~D~~~~~~y~~~--~~~~i~ydd~~Si~~K~~~a~~~glgGv~iW~l~~Dd~~g~c 404 (424)
+.-+| ..+- .....+++.++||+.+++||+|+ ++.||+|||++||+.|.+||+++||||+|+|++++|-
T Consensus 350 ~~~~~~~~~~l~~n~~~~~g~~~~~d~~a~apyL~n~~~~vFiSyDd~rSvkaK~eYv~~n~LGG~m~We~sgD~----- 424 (441)
T COG3325 350 GDKDYGKAYDLDANNAGKNGYERYWDDVAKAPYLYNPEKGVFISYDDPRSVKAKAEYVADNNLGGMMFWEISGDE----- 424 (441)
T ss_pred cCccchhhccccccccCCCCeeEecccccccceeecCCCCeEEEccCCcchhhHHHHHhhcCccceEEEEecCCc-----
Confidence 11122 2332 23355889999999999999997 7889999999999999999999999999999999993
Q ss_pred CCCCchhHHHHHHhhhc
Q psy1028 405 HTSPYPLIKRIKTVLTD 421 (424)
Q Consensus 405 g~g~~~Ll~a~~~~l~~ 421 (424)
...|++++.+.|..
T Consensus 425 ---n~~llna~~~~l~~ 438 (441)
T COG3325 425 ---NGVLLNAVNEGLGF 438 (441)
T ss_pred ---chhHHHHhhcccCC
Confidence 56899999998753
No 5
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=100.00 E-value=1.1e-62 Score=480.64 Aligned_cols=319 Identities=23% Similarity=0.408 Sum_probs=263.1
Q ss_pred EEEEEEeCCCCC---CCCCCCCCCCCCccEEEEEEEEecCCCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEe-cCCC
Q psy1028 69 QLFCYYSLPQNS---SGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVT-DAGT 144 (424)
Q Consensus 69 ~vvgY~~~~~~~---~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg-~~~~ 144 (424)
|+||||++|... ..+.+.+|+.++||||+|+|+.++++|++...+ ..+.+.++.++| ++|||+||| |..+
T Consensus 1 ~~v~Y~~~w~~~r~~~~~~~~~i~~~~~THi~yaf~~~~~~g~l~~~~--~~~~~~~~~~~k----~lkvllsiGG~~~s 74 (345)
T cd02878 1 KNIAYFEAYNLDRPCLNMDVTQIDTSKYTHIHFAFANITSDFSVDVSS--VQEQFSDFKKLK----GVKKILSFGGWDFS 74 (345)
T ss_pred CEEEEEChhhcCCCCCCCCHhHCCcccCCEEEEEeEeecCCCeEeecc--cHHHHHHHHhhc----CcEEEEEEeCCCCC
Confidence 589999998432 368899999999999999999999999988753 334455555554 499999999 4433
Q ss_pred C------CchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCC------CCchhhHHHHHHHHHHHHHHcCCCc
Q psy1028 145 G------NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPG------PNKSHEKRMFSKLLQQLKFTLSGRF 212 (424)
Q Consensus 145 ~------~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~------~~~~~~~~~~~~~l~~Lr~~l~~~~ 212 (424)
. .|+.++ +++.|++||++++++|++|+|||||||||+|...+ +.++ |+++|+.||++||++|++++
T Consensus 75 ~~~~~~~~f~~~~-~~~~R~~Fi~si~~~~~~~~fDGidiDwE~P~~~~~~~~~~~~~~-d~~n~~~ll~elr~~l~~~~ 152 (345)
T cd02878 75 TSPSTYQIFRDAV-KPANRDTFANNVVNFVNKYNLDGVDFDWEYPGAPDIPGIPAGDPD-DGKNYLEFLKLLKSKLPSGK 152 (345)
T ss_pred CCCccchhhHhhc-CHHHHHHHHHHHHHHHHHcCCCceeecccCCcccCCCCCCCCChH-HHHHHHHHHHHHHHHhCcCc
Confidence 3 478887 99999999999999999999999999999997542 2457 89999999999999999889
Q ss_pred EEEEEecCCccccccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCC-CCCCccccHHHHHHHHHHcCC
Q psy1028 213 LMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTD-QGYFKSLNANWSVNYYLYKGI 291 (424)
Q Consensus 213 ~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~-~~~~~~~~~~~~~~~~~~~gv 291 (424)
+||+++|+..... ..+|+++|.+++||||||+||+|+. | +..+++++|....... .......+++.+|++|++.|+
T Consensus 153 ~ls~a~~~~~~~~-~~yd~~~l~~~vD~i~vMtYD~~g~-w-~~~~~~~~p~~p~~~~~~~~~~~~~~~~~v~~~~~~Gv 229 (345)
T cd02878 153 SLSIAAPASYWYL-KGFPIKDMAKYVDYIVYMTYDLHGQ-W-DYGNKWASPGCPAGNCLRSHVNKTETLDALSMITKAGV 229 (345)
T ss_pred EEEEEcCCChhhh-cCCcHHHHHhhCcEEEEEeecccCC-c-CccCCcCCCCCCcccccccCCCchhHHHHHHHHHHcCC
Confidence 9999999876543 4699999999999999999999999 9 6665555553221100 000011258899999999999
Q ss_pred CCCceEeecccceeeeeecCCCCCCCCCccccCCCC---C----CCcceehHHhhhhc-cCCCceEEEcCCCeeeEE-Ee
Q psy1028 292 PANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRI---G----NQGFVDYIDTVAFL-RDPDTIQIFDKNTSVPYA-YR 362 (424)
Q Consensus 292 p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~---g----~~g~~~y~~i~~~~-~~~~~~~~~D~~~~~~y~-~~ 362 (424)
|++||+||||+|||.|++.++.++++++|+.|++.. | ..+++.|.|+|..+ ..++++..||+.++++|+ |.
T Consensus 230 p~~KlvlGip~YGr~~~l~~~~~~~~~~p~~g~~~~~~~g~~~~~~g~~~~~e~~~~~~~~~~~~~~~d~~~~~~y~~~~ 309 (345)
T cd02878 230 PSNKVVVGVASYGRSFKMADPGCTGPGCTFTGPGSGAEAGRCTCTAGYGAISEIEIIDISKSKNKRWYDTDSDSDILVYD 309 (345)
T ss_pred CHHHeEEeeccccceeeccCCCCCCCCCcccCCCCCCCCCCCCCchhhhhHHHHHHHHhccCCCcEEEecCCCccEEEEc
Confidence 999999999999999999999999999999887532 2 45566679999743 557789999999999987 55
Q ss_pred CCEEEEECCHHHHHHHHHHHHhcCCceEEEeeccCC
Q psy1028 363 GDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398 (424)
Q Consensus 363 ~~~~i~ydd~~Si~~K~~~a~~~glgGv~iW~l~~D 398 (424)
+++||+|||++|++.|++||+++||||+|+|+|++|
T Consensus 310 ~~~wv~ydd~~Si~~K~~y~~~~~LgGv~~W~ld~~ 345 (345)
T cd02878 310 DDQWVAYMSPATKAARIEWYKGLNFGGTSDWAVDLQ 345 (345)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCceEEEeeccCC
Confidence 779999999999999999999999999999999987
No 6
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=100.00 E-value=2.8e-62 Score=468.76 Aligned_cols=278 Identities=31% Similarity=0.577 Sum_probs=243.7
Q ss_pred cEEEEEEeCCCCCCCCCCCCCCCCCccEEEEEEEEecCCC-eEeecCCChhhHHHHHH-HHHHhCCCceEEEEEe-cC-C
Q psy1028 68 YQLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNN-TVAHLEPDHVKYYRDVV-AMKLLNPNLKVLISVT-DA-G 143 (424)
Q Consensus 68 ~~vvgY~~~~~~~~~~~~~~i~~~~~Thv~~~f~~~~~~g-~~~~~~~~~~~~~~~~~-~lk~~n~~~kvllsvg-~~-~ 143 (424)
-+++|||.+|. +.|.+++|+.++||||+|+|+.++.++ .+...+ ..+..+..+. .+|+++|++|+|+||| +. +
T Consensus 3 ~~~~~Y~~~w~--~~~~~~~i~~~~~THi~yaf~~~~~~~~~~~~~~-~~~~~~~~~~~~~k~~~~~lkvlisiGG~~~~ 79 (299)
T cd02879 3 IVKGGYWPAWS--EEFPPSNIDSSLFTHLFYAFADLDPSTYEVVISP-SDESEFSTFTETVKRKNPSVKTLLSIGGGGSD 79 (299)
T ss_pred eEEEEEECCCC--CCCChhHCCcccCCEEEEEEEEecCCCCEEeecc-ccHHHHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 47899999996 579999999999999999999999865 566554 3334455554 6888999999999999 43 3
Q ss_pred CCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC--------CCcEEE
Q psy1028 144 TGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS--------GRFLMT 215 (424)
Q Consensus 144 ~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~--------~~~~ls 215 (424)
+..|+.++++++.|++||+++++++++|||||||||||+|.. ++ |+++|+.||++||++|+ ++++||
T Consensus 80 s~~fs~~~~~~~~R~~fi~siv~~l~~~~fDGidiDWE~P~~----~~-d~~n~~~ll~elr~~l~~~~~~~~~~~~~ls 154 (299)
T cd02879 80 SSAFAAMASDPTARKAFINSSIKVARKYGFDGLDLDWEFPSS----QV-EMENFGKLLEEWRAAVKDEARSSGRPPLLLT 154 (299)
T ss_pred CchhhHHhCCHHHHHHHHHHHHHHHHHhCCCceeecccCCCC----hh-HHHHHHHHHHHHHHHHHHHhhccCCCcEEEE
Confidence 678999999999999999999999999999999999999963 56 99999999999999997 478999
Q ss_pred EEecCCccc----cccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCC
Q psy1028 216 VAVAAPGPI----IDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGI 291 (424)
Q Consensus 216 ~av~~~~~~----~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gv 291 (424)
+++++.... ....||+++|.++|||||||+||+|++ |....+++++||+.... .++++.+|++|++.|+
T Consensus 155 ~av~~~~~~~~~~~~~~yd~~~l~~~vD~i~vMtYD~~g~-~~~~~~~~~a~l~~~~~------~~~~~~~v~~~~~~g~ 227 (299)
T cd02879 155 AAVYFSPILFLSDDSVSYPIEAINKNLDWVNVMAYDYYGS-WESNTTGPAAALYDPNS------NVSTDYGIKSWIKAGV 227 (299)
T ss_pred eecccchhhccccccccCCHHHHHhhCCEEEEEeecccCC-CCCCCCCCCCcCCCCCC------CCCHHHHHHHHHHcCC
Confidence 999876543 345689999999999999999999999 83346889999986432 3489999999999999
Q ss_pred CCCceEeecccceeeeeecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceEEEcCCCeeeEEEeCCEEEEECC
Q psy1028 292 PANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQWISFDN 371 (424)
Q Consensus 292 p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y~~~~~~~i~ydd 371 (424)
|++||+||||||||.|++ ||+.+.++|.+++++||+|||
T Consensus 228 p~~KlvlGvp~YGr~~~~-----------------------------------------~D~~~~~~y~~~~~~wi~ydd 266 (299)
T cd02879 228 PAKKLVLGLPLYGRAWTL-----------------------------------------YDTTTVSSYVYAGTTWIGYDD 266 (299)
T ss_pred CHHHEEEEeccccccccc-----------------------------------------cCCCcceEEEEECCEEEEeCC
Confidence 999999999999999963 688888899999999999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEeeccCCCCC
Q psy1028 372 EPSLAYKTEYLMSKGLAGAMVWCLNTDDYA 401 (424)
Q Consensus 372 ~~Si~~K~~~a~~~glgGv~iW~l~~Dd~~ 401 (424)
++|++.|++||+++||||+|+|+|++||++
T Consensus 267 ~~Si~~K~~~a~~~~lgGv~~W~l~~Dd~~ 296 (299)
T cd02879 267 VQSIAVKVKYAKQKGLLGYFAWAVGYDDNN 296 (299)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEeecCCcc
Confidence 999999999999999999999999999975
No 7
>KOG2806|consensus
Probab=100.00 E-value=5.6e-61 Score=479.18 Aligned_cols=345 Identities=28% Similarity=0.508 Sum_probs=293.9
Q ss_pred ccCCCcEEEEEEeCCCCCCCCCCCCCCCCCccEEEEEEEEecCCCeEeecCCC-hhhHHHHHHHHHHhCCCceEEEEEe-
Q psy1028 63 VAVDNYQLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPD-HVKYYRDVVAMKLLNPNLKVLISVT- 140 (424)
Q Consensus 63 ~~~~~~~vvgY~~~~~~~~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~-~~~~~~~~~~lk~~n~~~kvllsvg- 140 (424)
...+.++++|||..+. ....+.+++..+|||++|+|+.++.+|.+.+.... ..........+|.+||++|+|+|||
T Consensus 53 ~~~c~~~~~~~~~~~~--~~~~~~~~~~~~~TH~vfafa~~~~~~~~~~~~~~~~~~f~~~~~~~k~~n~~vK~llSIGG 130 (432)
T KOG2806|consen 53 NTVCEKSIVGYYPSRI--GPETLEDQDPLKCTHLVYAFAKMKRVGYVVFCGARTMNRFSSYNQTAKSSNPTVKVMISIGG 130 (432)
T ss_pred cccccceeEEEeCCCC--CCCCccccChhhcCcceEEEeeecccccEEeccchhhhhhHHHHHHHHhhCCCceEEEEecC
Confidence 3457889999998864 25788999999999999999999999998887632 2356666677898999999999999
Q ss_pred c-CCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC---CC-----
Q psy1028 141 D-AGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS---GR----- 211 (424)
Q Consensus 141 ~-~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~---~~----- 211 (424)
+ ..+..|+.++++++.|+.||++|++||++|+|||||||||+|.. .+. ++.+|..|+++||++|. +.
T Consensus 131 ~~~ns~~fs~~~s~~~~r~~FI~Sii~fl~~~~fDGvDL~We~P~~---~~~-d~~~~~~~i~elr~~~~~~~~~~~~~~ 206 (432)
T KOG2806|consen 131 SHGNSGLFSLVLSDRMIRAKFIESVVSFIKDYGFDGVDLAWEWPLF---TPS-DQLEFSRFIQELRSAFARETLKSPDTA 206 (432)
T ss_pred CCCCccchhhhhcChHHHHHHHHHHHHHHHHcCCCceeeeeECCCC---chh-hHHHHHHHHHHHHHHHHHHhhccCCcc
Confidence 5 55889999999999999999999999999999999999999951 245 89999999999999998 11
Q ss_pred cEEEEEecCCcc-ccccccChhhhhccccEEEeeecccCCCccCCC--CCCCCCCCCCCCCCCCCCccccHHHHHHHHHH
Q psy1028 212 FLMTVAVAAPGP-IIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLP--VLGPNAPLYPAVTDQGYFKSLNANWSVNYYLY 288 (424)
Q Consensus 212 ~~ls~av~~~~~-~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~--~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~ 288 (424)
.+|+.++..... ....+||+++|.+++||||||+||||++ | .. .+|++|||+.... .....++++..+++|++
T Consensus 207 ~~l~~~v~~~~~~~~~~~ydi~~i~~~~DfiNi~syDf~gp-w-~~~~~tGp~aPl~~~~~--~~~~~~Nvd~~~ky~~~ 282 (432)
T KOG2806|consen 207 KVLEAVVADSKQSAYSDGYDYENLSKYVDFINIMSYDYYGP-W-SLPCFTGPPSPLYKGPS--MTNPKMNVDSLLKYWTE 282 (432)
T ss_pred ceeeeccccCccchhhccCCHHHHHhhCCeEEEecccccCC-C-cCCCcCCCCcccCCCCc--ccccCcchhhhHHHHhh
Confidence 245555554433 5667899999999999999999999999 9 66 7999999997654 22335799999999999
Q ss_pred cCCCCCceEeecccceeeeeecCCCCCCCCCccccCCCCC-----CCcceehHHhhhhccCCCceEEEcCCCeeeEEEe-
Q psy1028 289 KGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG-----NQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR- 362 (424)
Q Consensus 289 ~gvp~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g-----~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y~~~- 362 (424)
.|.||+||+|||||||+.|++.+...+ ++.+..+++..| ..|.++|.|||+...+.+ ...||++.+++|+|.
T Consensus 283 ~~~~~~Kl~~gip~yg~~w~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~ls~~ei~~~~~~~~-~~~~d~~~~~~Y~~~~ 360 (432)
T KOG2806|consen 283 KGLPPSKLVLALPFYGRSWQLLEDSRS-SAAPPFGQAAPVSMRSKGGGYMSYPEICERKINTG-VTHWDEETQTPYLYNI 360 (432)
T ss_pred cCCCchheEEEEecceehhhhcCCcCC-CCCccCCCcccCccccccCceeeHHHHHHHhcccC-CceecCCceeeeEEec
Confidence 999999999999999999999987555 666666655544 688999999999666555 799999999999999
Q ss_pred -CCEEEEECCHHHHHHHHHHHHhcCCceEEEeeccCCCCCCc-cCC-CCchhHHHHHHhh
Q psy1028 363 -GDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAK-YHT-SPYPLIKRIKTVL 419 (424)
Q Consensus 363 -~~~~i~ydd~~Si~~K~~~a~~~glgGv~iW~l~~Dd~~g~-cg~-g~~~Ll~a~~~~l 419 (424)
+++||+|||++|++.|++||+++||||+|+|.+++||++|. |+. ..+|++.++.+.+
T Consensus 361 ~~~~wvtyen~~Si~~K~~Yvk~~~lGGv~iW~vd~DD~~~~~~~~~~~~~~~~~~~~~~ 420 (432)
T KOG2806|consen 361 PYDQWVTYENERSIHIKADYAKDEGLGGVAIWNIDQDDESGSLLNAALSRPQTCSICLKN 420 (432)
T ss_pred CCCeEEecCCHHHHHHHHHHHHhcCCceEEEEeccCCCCCCccccccccccceeeccccc
Confidence 99999999999999999999999999999999999999998 553 5888888776654
No 8
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=100.00 E-value=7.2e-61 Score=464.88 Aligned_cols=286 Identities=31% Similarity=0.604 Sum_probs=251.7
Q ss_pred EEEEEeCCCCC-CCCCCC-CCCCCCccEEEEEEEEecCCCeEeecCC-------------------ChhhHHHHHHHHHH
Q psy1028 70 LFCYYSLPQNS-SGLLPH-QLNPNLCTHILLAFAQVSKNNTVAHLEP-------------------DHVKYYRDVVAMKL 128 (424)
Q Consensus 70 vvgY~~~~~~~-~~~~~~-~i~~~~~Thv~~~f~~~~~~g~~~~~~~-------------------~~~~~~~~~~~lk~ 128 (424)
|+|||++|... ..+.+. +|+..+||||+|+|+.++++|.+...+. .....++++.+||+
T Consensus 1 v~~Y~~~W~~~~~~~~~~~~i~~~~~THl~yaf~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~ 80 (322)
T cd06548 1 VVGYFTNWGIYGRNYFVTDDIPADKLTHINYAFADIDGDGGVVTSDDEAADEAAQSVDGGADTDDQPLKGNFGQLRKLKQ 80 (322)
T ss_pred CEEEeCCCcccCCCCCcccCCChhHCcEEEEEeeeEcCCCCeEccChhhhhhccccCCcccccCCccchhHHHHHHHHHH
Confidence 58999998543 234445 6999999999999999999998876431 12367889999999
Q ss_pred hCCCceEEEEEe-cCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCC-----CchhhHHHHHHHHH
Q psy1028 129 LNPNLKVLISVT-DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGP-----NKSHEKRMFSKLLQ 202 (424)
Q Consensus 129 ~n~~~kvllsvg-~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~-----~~~~~~~~~~~~l~ 202 (424)
+||++||++||| +..+..|+.++++++.|++|+++|+++|++|+|||||||||+|...++ .++ ++++|+.||+
T Consensus 81 ~~p~lkvl~siGG~~~s~~f~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiDwE~p~~~~~~~~~~~~~-d~~~~~~ll~ 159 (322)
T cd06548 81 KNPHLKILLSIGGWTWSGGFSDAAATEASRAKFADSAVDFIRKYGFDGIDIDWEYPGSGGAPGNVARPE-DKENFTLLLK 159 (322)
T ss_pred hCCCCEEEEEEeCCCCCCCchhHhCCHHHHHHHHHHHHHHHHhcCCCeEEECCcCCCCCCCCCCCCChh-HHHHHHHHHH
Confidence 999999999999 666778999999999999999999999999999999999999976432 367 9999999999
Q ss_pred HHHHHcCC-------CcEEEEEecCCccccccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCc
Q psy1028 203 QLKFTLSG-------RFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFK 275 (424)
Q Consensus 203 ~Lr~~l~~-------~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~ 275 (424)
+||++|+. +++||+++++...... .+++++|.+++|+||||+||+|++ | ...+|++|||+....++ ..
T Consensus 160 ~Lr~~l~~~~~~~~~~~~Ls~av~~~~~~~~-~~~~~~l~~~vD~vnlMtYD~~g~-w-~~~~g~~spL~~~~~~~--~~ 234 (322)
T cd06548 160 ELREALDALGAETGRKYLLTIAAPAGPDKLD-KLEVAEIAKYLDFINLMTYDFHGA-W-SNTTGHHSNLYASPADP--PG 234 (322)
T ss_pred HHHHHHHHhhhccCCceEEEEEccCCHHHHh-cCCHHHHhhcCCEEEEEEeeccCC-C-CCCCCCCCCCCCCCCCC--CC
Confidence 99999983 6999999998776443 578999999999999999999999 9 88999999999766532 23
Q ss_pred cccHHHHHHHHHHcCCCCCceEeecccceeeeeecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceEEEcCCC
Q psy1028 276 SLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNT 355 (424)
Q Consensus 276 ~~~~~~~~~~~~~~gvp~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~~ 355 (424)
.++++.++++|++.|+|++||+||||+|||.|++ ++..||+.+
T Consensus 235 ~~~v~~~v~~~~~~gvp~~KlvlGip~YGr~~~~-------------------------------------~~~~~D~~~ 277 (322)
T cd06548 235 GYSVDAAVNYYLSAGVPPEKLVLGVPFYGRGWTG-------------------------------------YTRYWDEVA 277 (322)
T ss_pred CccHHHHHHHHHHcCCCHHHeEEEecccccccCC-------------------------------------cEEEEcCCc
Confidence 4699999999999999999999999999999964 478999999
Q ss_pred eeeEEEeC--CEEEEECCHHHHHHHHHHHHhcCCceEEEeeccCC
Q psy1028 356 SVPYAYRG--DQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398 (424)
Q Consensus 356 ~~~y~~~~--~~~i~ydd~~Si~~K~~~a~~~glgGv~iW~l~~D 398 (424)
++||+|++ ++||+|||++||+.|++||+++||||+|+|++++|
T Consensus 278 ~~~y~~~~~~~~~v~ydd~~Si~~K~~~a~~~~LgGv~~W~l~~D 322 (322)
T cd06548 278 KAPYLYNPSTKTFISYDDPRSIKAKADYVKDKGLGGVMFWELSGD 322 (322)
T ss_pred ceeEEEeCCCCeEEEeCCHHHHHHHHHHHHhcCCccEEEEeccCC
Confidence 99999986 89999999999999999999999999999999997
No 9
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=100.00 E-value=1.4e-56 Score=440.08 Aligned_cols=323 Identities=33% Similarity=0.607 Sum_probs=273.7
Q ss_pred cEEEEEEeCCCC-CCC-CCCCCCCCCCccEEEEEEEEecCCCeEee------cCCChhhHHHHHHHHHHhCCCceEEEEE
Q psy1028 68 YQLFCYYSLPQN-SSG-LLPHQLNPNLCTHILLAFAQVSKNNTVAH------LEPDHVKYYRDVVAMKLLNPNLKVLISV 139 (424)
Q Consensus 68 ~~vvgY~~~~~~-~~~-~~~~~i~~~~~Thv~~~f~~~~~~g~~~~------~~~~~~~~~~~~~~lk~~n~~~kvllsv 139 (424)
++|+|||++|.. ... +.+++++.+.||||+|+|+.++.++.+.. ........++.+.++++++|++||++||
T Consensus 1 ~~vv~Y~~~~~~~~~~~~~~~~i~~~~~t~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvllsi 80 (343)
T PF00704_consen 1 KRVVGYYSNWNSYRPGSYKIEDIPWSKCTHIVYAFAGIDPNGNLNYPWNFDDDNDGDSSGFKNLKELKAKNPGVKVLLSI 80 (343)
T ss_dssp BEEEEEEEGGGGSSTGCSHGGGSHTTTESEEEEEEEEEETTTTEEEGTTTECSSTTHHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred CEEEEEECCcCCCCCCCCCHHHCCcccCCEEEEEeeeecCCCceecccccccccCccccchhHHHHHHhhccCceEEEEe
Confidence 589999999853 233 77899999999999999999999998752 2224457788888999999999999999
Q ss_pred e-cCCCC-CchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCC------C
Q psy1028 140 T-DAGTG-NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSG------R 211 (424)
Q Consensus 140 g-~~~~~-~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~------~ 211 (424)
| +..+. .|..++++++.|++|+++|+++|++|+|||||||||++...+. ++ +..+|..||++||++|++ +
T Consensus 81 gg~~~~~~~~~~~~~~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~-~~-~~~~~~~~l~~L~~~l~~~~~~~~~ 158 (343)
T PF00704_consen 81 GGWGMSSDGFSQLLSNPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGD-PQ-DKDNYTAFLKELRKALKRANRSGKG 158 (343)
T ss_dssp EETTSSHHHHHHHHHSHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSS-TT-HHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred ccccccccccccccccHHHHHHHHHhhhhhhcccCcceeeeeeeecccccc-ch-hhhhhhhhhhhhhhhhcccccccce
Confidence 9 55565 8999999999999999999999999999999999999976322 45 899999999999999994 8
Q ss_pred cEEEEEecCCccccccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCC
Q psy1028 212 FLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGI 291 (424)
Q Consensus 212 ~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gv 291 (424)
++||+++|+...... .++++++.+++|+|+||+||++++ | ...+++++|++....+ ...++++.++++|+..|+
T Consensus 159 ~~ls~a~p~~~~~~~-~~~~~~l~~~vD~v~~m~yD~~~~-~-~~~~~~~~~l~~~~~~---~~~~~~~~~v~~~~~~g~ 232 (343)
T PF00704_consen 159 YILSVAVPPSPDYYD-KYDYKELAQYVDYVNLMTYDYHGP-W-SDVTGPNAPLYDSSWD---SNYYSVDSAVQYWIKAGV 232 (343)
T ss_dssp SEEEEEEECSHHHHT-THHHHHHHTTSSEEEEETTSSSST-T-SSBETTSSSSSHTTTS---GTSSSHHHHHHHHHHTTS
T ss_pred eEEeecccccccccc-ccccccccccccccccccccCCCC-c-ccccccccccccCCcc---CCCceeeeehhhhccccC
Confidence 999999998776443 459999999999999999999998 8 7799999999976643 123589999999999999
Q ss_pred CCCceEeecccceeeeeecCCCCCCCCCcccc-C-CCCCCCcceehHHhhhhccCCCceEEEcCCCeeeEEEeC--CEEE
Q psy1028 292 PANKLLLGLPTYGHSYTLVNPDSTDYGMPAAD-V-GRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRG--DQWI 367 (424)
Q Consensus 292 p~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g-~-~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y~~~~--~~~i 367 (424)
|++||+||+|+||+.|++.+...+...++..+ . ......+.++|.++|..++.+++...||+.++++|.+.. ++||
T Consensus 233 p~~Kl~lglp~yg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~y~~~~~~~~~i 312 (343)
T PF00704_consen 233 PPSKLVLGLPFYGRSWTLVNGSPNGPWGPAYWSPGKGTKNAGILSYYELCALLKSNGYTVQWDDTAQAPYAYNDDKKHWI 312 (343)
T ss_dssp TGGGEEEEEESEEEEEESSSSTTSTTTBBEESEETTTTSBTTEEEHHHHHHHTHHTTEEEEEETTTTEEEEEETTTTEEE
T ss_pred ChhheeecCCcccccceecCCcCCCCCCcccccccccccCCCccccccchhhcccCCcceEEeecccceEEEecCCCeEE
Confidence 99999999999999999988766665554421 1 111267899999999988778889999999999999986 8999
Q ss_pred EECCHHHHHHHHHHHHhcCCceEEEeeccCC
Q psy1028 368 SFDNEPSLAYKTEYLMSKGLAGAMVWCLNTD 398 (424)
Q Consensus 368 ~ydd~~Si~~K~~~a~~~glgGv~iW~l~~D 398 (424)
+|||++|++.|++|++++||||+++|+|++|
T Consensus 313 ~~e~~~Si~~K~~~v~~~glgGv~~W~l~~D 343 (343)
T PF00704_consen 313 SYEDPRSIKAKMDYVKEKGLGGVAIWSLDQD 343 (343)
T ss_dssp EE--HHHHHHHHHHHHHTT-SEEEEETGGGS
T ss_pred EeCCHHHHHHHHHHHHhCCCCEEEEEecCCC
Confidence 9999999999999999999999999999998
No 10
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=100.00 E-value=2.2e-56 Score=433.00 Aligned_cols=295 Identities=20% Similarity=0.275 Sum_probs=244.5
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCCccEEEEEEEEecCCCeEeecCCChhhHHHHHHHHHHhCCCceEEEE--EecCCCCC
Q psy1028 69 QLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLIS--VTDAGTGN 146 (424)
Q Consensus 69 ~vvgY~~~~~~~~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvlls--vg~~~~~~ 146 (424)
.++|||++|.. ..+.+.+++.++||||+|+|+.++++|.........+.....+..+|+++|++||+++ +|+++...
T Consensus 4 ~~~~y~~~W~~-~~~~~~~~~~~~lthv~~~f~~i~~~g~~~~~~~~~~~~~~~~~~lk~~~~~lkvlp~i~~gg~~~~~ 82 (318)
T cd02876 4 PVLGYVTPWNS-HGYDVAKKFAAKFTHVSPVWLQIKRKGNKFVIEGTHDIDKGWIEEVRKANKNIKILPRVLFEGWSYQD 82 (318)
T ss_pred ceEEEEcCcCc-cchHHHHHHhccCCEecceEEEEecCCCeeeeecCcchhhHHHHHHHhhCCCcEEEeEEEECCCCHHH
Confidence 48999999965 4688899999999999999999998776433221111122346788999999999955 56545556
Q ss_pred chhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEe-ccCCCCCCCCchhhHHHHHHHHHHHHHHcC-CCcEEEEEecCCccc
Q psy1028 147 FAKAVSTRANRLAFSESILEFLIEHNLDGIDLD-WEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-GRFLMTVAVAAPGPI 224 (424)
Q Consensus 147 ~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiD-wE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls~av~~~~~~ 224 (424)
|+.++++++.|++||+++++++++||||||||| ||+|...+. ++ ++++|+.||++||++|+ .++.|++++++....
T Consensus 83 f~~~~~~~~~R~~fi~s~~~~~~~~~~DGidiD~we~p~~~~~-~~-d~~~~~~~l~el~~~l~~~~~~l~~~v~~~~~~ 160 (318)
T cd02876 83 LQSLLNDEQEREKLIKLLVTTAKKNHFDGIVLEVWSQLAAYGV-PD-KRKELIQLVIHLGETLHSANLKLILVIPPPREK 160 (318)
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHcCCCcEEEechhhhcccCC-HH-HHHHHHHHHHHHHHHHhhcCCEEEEEEcCcccc
Confidence 999999999999999999999999999999999 999975432 67 89999999999999999 788999999875431
Q ss_pred -----cccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcC-CCCCceEe
Q psy1028 225 -----IDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKG-IPANKLLL 298 (424)
Q Consensus 225 -----~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~g-vp~~Klvl 298 (424)
....+|+++|++++|+|+||+||+|++ ..+|++||++ |++.+++++++.| +|++||+|
T Consensus 161 ~~~~~~~~~~d~~~l~~~vD~v~lMtYD~~~~----~~~g~~apl~------------~v~~~v~~~~~~~~vp~~Klvl 224 (318)
T cd02876 161 GNQNGLFTRKDFEKLAPHVDGFSLMTYDYSSP----QRPGPNAPLS------------WVRSCLELLLPESGKKRAKILL 224 (318)
T ss_pred ccccccccccCHHHHHhhccEEEEEeeccCCC----CCCCCCCCcH------------HHHHHHHHHHhcCCCCHHHeEE
Confidence 223579999999999999999999976 5799999998 9999999999987 99999999
Q ss_pred ecccceeeeeecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceEEEcCCCeee-EEEeC---CEEEEECCHHH
Q psy1028 299 GLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVP-YAYRG---DQWISFDNEPS 374 (424)
Q Consensus 299 Glp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~-y~~~~---~~~i~ydd~~S 374 (424)
|||+|||.|++.+ .+.+ +++.+.+++++..++++.||++++.+ |.|.+ ++||||||++|
T Consensus 225 Gip~YG~~w~~~~-----~~~~------------~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~~~~~v~ydd~~S 287 (318)
T cd02876 225 GLNFYGNDYTLPG-----GGGA------------ITGSEYLKLLKSNKPKLQWDEKSAEHFFEYKNKGGKHAVFYPTLKS 287 (318)
T ss_pred eccccccccccCC-----CCce------------eehHHHHHHHHhcCCCceeccCCCcceEEEecCCCcEEEEeCCHHH
Confidence 9999999998743 1111 33445555555567889999997665 77864 78999999999
Q ss_pred HHHHHHHHHhcCCceEEEeeccCCCC
Q psy1028 375 LAYKTEYLMSKGLAGAMVWCLNTDDY 400 (424)
Q Consensus 375 i~~K~~~a~~~glgGv~iW~l~~Dd~ 400 (424)
++.|++||+++|| |+|+|+||+++.
T Consensus 288 i~~K~~~a~~~~l-Gv~~W~lg~~~~ 312 (318)
T cd02876 288 IQLRLDLAKELGT-GISIWELGQGLD 312 (318)
T ss_pred HHHHHHHHHHcCC-cEEEEcccCCch
Confidence 9999999999999 999999999873
No 11
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=100.00 E-value=1.4e-53 Score=417.33 Aligned_cols=307 Identities=20% Similarity=0.306 Sum_probs=244.5
Q ss_pred CCcEEEEEEeCCCCCCCCCCCCCCCCCccEEEEEEEEecCCCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEecCCCC
Q psy1028 66 DNYQLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTG 145 (424)
Q Consensus 66 ~~~~vvgY~~~~~~~~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg~~~~~ 145 (424)
..+.|+||.... ..-...+++++|||..+ |++ + ..+...+|++ |+||+++.+..
T Consensus 34 ~~~~~~~~~~~~-----~~~~~~~~~~~tti~~~-------~~~-----~-----~~~~~~A~~~-~v~v~~~~~~~--- 87 (358)
T cd02875 34 PRFEFLVFSVNS-----TNYPNYDWSKVTTIAIF-------GDI-----D-----DELLCYAHSK-GVRLVLKGDVP--- 87 (358)
T ss_pred CceEEEEEEeCC-----CcCcccccccceEEEec-------CCC-----C-----HHHHHHHHHc-CCEEEEECccC---
Confidence 468899999752 23356788999999876 211 1 2366677776 99999874321
Q ss_pred CchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC---CCcEEEEEecCCc
Q psy1028 146 NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS---GRFLMTVAVAAPG 222 (424)
Q Consensus 146 ~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~---~~~~ls~av~~~~ 222 (424)
...+.+++.|++||+++++++++|||||||||||+|... .++ ++++|+.||++||++|+ .+++||++++..+
T Consensus 88 --~~~l~~~~~R~~fi~siv~~~~~~gfDGIdIDwE~p~~~--~~~-d~~~~t~llkelr~~l~~~~~~~~Lsvav~~~p 162 (358)
T cd02875 88 --LEQISNPTYRTQWIQQKVELAKSQFMDGINIDIEQPITK--GSP-EYYALTELVKETTKAFKKENPGYQISFDVAWSP 162 (358)
T ss_pred --HHHcCCHHHHHHHHHHHHHHHHHhCCCeEEEcccCCCCC--Ccc-hHHHHHHHHHHHHHHHhhcCCCcEEEEEEecCc
Confidence 235789999999999999999999999999999999642 245 88999999999999998 3789999998765
Q ss_pred ccccc-ccChhhhhccccEEEeeecccCCCccCC--CCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCCCceEee
Q psy1028 223 PIIDR-AYDVPLMGRLVDFVSIMGYDYHSYIWYL--PVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLG 299 (424)
Q Consensus 223 ~~~~~-~~d~~~l~~~vD~v~vmtYD~~~~~w~~--~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~KlvlG 299 (424)
..... .||+++|++++|||+||+||+|+..| + ..+|+++|+. +++.++++|+..|+|++||+||
T Consensus 163 ~~~~~~~yd~~~l~~~vD~v~lMtYD~h~~~w-~~~~~~g~~ap~~------------~v~~~v~~~~~~gvp~~KLvLG 229 (358)
T cd02875 163 SCIDKRCYDYTGIADASDFLVVMDYDEQSQIW-GKECIAGANSPYS------------QTLSGYNNFTKLGIDPKKLVMG 229 (358)
T ss_pred ccccccccCHHHHHhhCCEeeEEeecccCCCC-CCCCCCCCCCCch------------hHHHHHHHHHHcCCCHHHeEEE
Confidence 43332 49999999999999999999997546 4 3588999987 8999999999999999999999
Q ss_pred cccceeeeeecCCCCC-----CCCCccccCCCCC-CCcceehHHhhhhccCCCceEEEcCCCeeeEEEe----CC-EEEE
Q psy1028 300 LPTYGHSYTLVNPDST-----DYGMPAADVGRIG-NQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR----GD-QWIS 368 (424)
Q Consensus 300 lp~YG~~~~~~~~~~~-----~~~~~~~g~~~~g-~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y~~~----~~-~~i~ 368 (424)
||+|||.|++.+.... .++.|..|.+..+ ..+.++|.|||+.++..++.+.||+.+++||.++ +. +|||
T Consensus 230 ip~YGr~w~~~~~~~~~~~~~~~~~p~~g~~~~~~~g~~i~Y~ei~~~~~~~~~~~~wD~~~~~py~~y~d~~g~~~~V~ 309 (358)
T cd02875 230 LPWYGYDYPCLNGNLEDVVCTIPKVPFRGANCSDAAGRQIPYSEIMKQINSSIGGRLWDSEQKSPFYNYKDKQGNLHQVW 309 (358)
T ss_pred eCCCCCceeCCCCcccCcccCCCCCCcCCCCCcCCCCCccCHHHHHHHHhcCCCceeeccccccceEEEecCCCcEEEEE
Confidence 9999999997654311 2334444433222 3457899999998887778899999999998743 22 6999
Q ss_pred ECCHHHHHHHHHHHHhcCCceEEEeeccCCCCCCccCCCCchhHHHHHHh
Q psy1028 369 FDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKYHTSPYPLIKRIKTV 418 (424)
Q Consensus 369 ydd~~Si~~K~~~a~~~glgGv~iW~l~~Dd~~g~cg~g~~~Ll~a~~~~ 418 (424)
|||++|++.|++||+++||||+|+|+||+||++|.|- ......++.+.
T Consensus 310 ydD~~Si~~K~~~a~~~gL~Gv~iW~ld~dD~~g~~~--~~~~~~~~~~~ 357 (358)
T cd02875 310 YDNPQSLSIKVAYAKNLGLKGIGMWNGDLLDYSGLPI--AEKQTEDMWNA 357 (358)
T ss_pred eCCHHHHHHHHHHHHhCCCCeEEEEeccccccCCCch--hhhhhHHHHhh
Confidence 9999999999999999999999999999999999873 22444454443
No 12
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=100.00 E-value=1.3e-53 Score=413.14 Aligned_cols=290 Identities=23% Similarity=0.367 Sum_probs=246.9
Q ss_pred EEEEEEeCCCCCCCCCCCCCCCCCccEEEEEEEEecCCCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEe-c----CC
Q psy1028 69 QLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVT-D----AG 143 (424)
Q Consensus 69 ~vvgY~~~~~~~~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg-~----~~ 143 (424)
.++|||.+|+.. .+...+-..+++|||++.|+.++++|.+.... ...+++.++++ ++||+++|| + ++
T Consensus 3 ~~~g~~~~~~~~-~~~~~~~~~~~lt~v~p~w~~~~~~g~~~~~~------~~~~~~~a~~~-~~kv~~~i~~~~~~~~~ 74 (313)
T cd02874 3 EVLGYYTPRNGS-DYESLRANAPYLTYIAPFWYGVDADGTLTGLP------DERLIEAAKRR-GVKPLLVITNLTNGNFD 74 (313)
T ss_pred eEEEEEecCCCc-hHHHHHHhcCCCCEEEEEEEEEcCCCCCCCCC------CHHHHHHHHHC-CCeEEEEEecCCCCCCC
Confidence 489999998763 35565667899999999999999999854432 13466666666 999999999 3 35
Q ss_pred CCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC-CCcEEEEEecCCc
Q psy1028 144 TGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-GRFLMTVAVAAPG 222 (424)
Q Consensus 144 ~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls~av~~~~ 222 (424)
+..|+.++++++.|++|+++|++++++|||||||||||++. ++ ++++|..||++||++|+ ++++|++++++..
T Consensus 75 ~~~~~~~l~~~~~r~~fi~~iv~~l~~~~~DGidiDwE~~~-----~~-d~~~~~~fl~~lr~~l~~~~~~lsv~~~p~~ 148 (313)
T cd02874 75 SELAHAVLSNPEARQRLINNILALAKKYGYDGVNIDFENVP-----PE-DREAYTQFLRELSDRLHPAGYTLSTAVVPKT 148 (313)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHhCCCcEEEecccCC-----HH-HHHHHHHHHHHHHHHhhhcCcEEEEEecCcc
Confidence 66789999999999999999999999999999999999984 45 89999999999999998 8899999987653
Q ss_pred c-----ccccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCCCceE
Q psy1028 223 P-----IIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLL 297 (424)
Q Consensus 223 ~-----~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~Klv 297 (424)
. .+...+++++|++++|+|+||+||+|+. | +.+||++|+. +++.++++++ .|+|++||+
T Consensus 149 ~~~~~~~~~~~~~~~~l~~~vD~v~lm~YD~~~~-~--~~~gp~a~~~------------~~~~~~~~~~-~gvp~~Klv 212 (313)
T cd02874 149 SADQFGNWSGAYDYAAIGKIVDFVVLMTYDWHWR-G--GPPGPVAPIG------------WVERVLQYAV-TQIPREKIL 212 (313)
T ss_pred ccccccccccccCHHHHHhhCCEEEEEEeccCCC-C--CCCCccCChH------------HHHHHHHHHH-hcCCHHHEE
Confidence 2 2235689999999999999999999999 4 7899999997 8999999887 589999999
Q ss_pred eecccceeeeeecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceEEEcCCCeeeEE-EeC----CEEEEECCH
Q psy1028 298 LGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYA-YRG----DQWISFDNE 372 (424)
Q Consensus 298 lGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y~-~~~----~~~i~ydd~ 372 (424)
||||+||+.|++.+.. .+..+.++|.++|++++..++++.||+.++++|. |.+ .+||+|||+
T Consensus 213 lGip~YG~~w~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~y~~~~g~~~~v~y~d~ 279 (313)
T cd02874 213 LGIPLYGYDWTLPYKK-------------GGKASTISPQQAINLAKRYGAEIQYDEEAQSPFFRYVDEQGRRHEVWFEDA 279 (313)
T ss_pred EeecccccccccCCCC-------------CcCccccCHHHHHHHHHHcCCCeEECcccCCCcEEEEeCCCCEEEEEeCcH
Confidence 9999999999875321 0133458899999988888899999999999976 432 479999999
Q ss_pred HHHHHHHHHHHhcCCceEEEeeccCCCCC
Q psy1028 373 PSLAYKTEYLMSKGLAGAMVWCLNTDDYA 401 (424)
Q Consensus 373 ~Si~~K~~~a~~~glgGv~iW~l~~Dd~~ 401 (424)
+|++.|++|++++||||+++|+|++||..
T Consensus 280 ~Si~~K~~~~~~~~lgGv~iW~lg~dD~~ 308 (313)
T cd02874 280 RSLQAKFELAKEYGLRGVSYWRLGLEDPQ 308 (313)
T ss_pred HHHHHHHHHHHHcCCCeEEEEECCCCCcc
Confidence 99999999999999999999999999953
No 13
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=100.00 E-value=1.4e-49 Score=381.17 Aligned_cols=285 Identities=18% Similarity=0.239 Sum_probs=233.3
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCccEEEEEEEEec-CCCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEe--cCCCCC
Q psy1028 70 LFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVS-KNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVT--DAGTGN 146 (424)
Q Consensus 70 vvgY~~~~~~~~~~~~~~i~~~~~Thv~~~f~~~~-~~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg--~~~~~~ 146 (424)
++|||..|+. ..+.........+|||++.|+++. .+|.+.... +. .....+..+|++++.++++.+++ .+.+..
T Consensus 2 ~l~~~~~w~~-~s~~sl~~~~~~l~~vsP~W~~~~~~~g~l~~~~-d~-~~~~~~~~~k~~~~~l~~~~~~~~~~~~~~~ 78 (298)
T cd06549 2 ALAFYTPWDD-ASFASLKRHAPRLDWLVPEWLNLTGPEGRIDVFV-DP-QGVAIIAAAKAHPKVLPLVQNISGGAWDGKN 78 (298)
T ss_pred eeEEEecCCh-hhHHHHHHhhccCCEEeceeEEEecCCCceeccC-Ch-HHHHHHHHHHcCCceeEEEEecCCCCCCHHH
Confidence 7899999976 455666667789999999999998 578886532 22 23334556666666677777777 333456
Q ss_pred chhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC-CCcEEEEEecCCcccc
Q psy1028 147 FAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-GRFLMTVAVAAPGPII 225 (424)
Q Consensus 147 ~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls~av~~~~~~~ 225 (424)
|+.++++++.|++||++|++++++|||||||||||++. ++ ++++|+.||++||++|+ .++.||+++|+...
T Consensus 79 ~~~~l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E~~~-----~~-d~~~~~~fl~eL~~~l~~~~~~lsv~v~~~~~-- 150 (298)
T cd06549 79 IARLLADPSARAKFIANIAAYLERNQADGIVLDFEELP-----AD-DLPKYVAFLSELRRRLPAQGKQLTVTVPADEA-- 150 (298)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCCCEEEecCCCC-----hh-HHHHHHHHHHHHHHHhhhcCcEEEEEecCCCC--
Confidence 89999999999999999999999999999999999983 56 89999999999999999 68999999997643
Q ss_pred ccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCCCceEeeccccee
Q psy1028 226 DRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGH 305 (424)
Q Consensus 226 ~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~YG~ 305 (424)
.+|++.|.+++|+++||+||+|++ ...+||.+++. |++..+++..+ |+|++||+||||+||+
T Consensus 151 --~~d~~~l~~~~D~v~lMtYD~~~~---~~~~gp~a~~~------------~~~~~~~~~~~-~vp~~KlvlGip~YG~ 212 (298)
T cd06549 151 --DWNLKALARNADKLILMAYDEHYQ---GGAPGPIASQD------------WFESNLAQAVK-KLPPEKLIVALGSYGY 212 (298)
T ss_pred --CCCHHHHHHhCCEEEEEEeccCCC---CCCCCCCCChh------------hHHHHHHHHHh-CCCHHHEEEEecccCc
Confidence 589999999999999999999998 46778888776 88888888765 8999999999999999
Q ss_pred eeeecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceEEEcCCCeee-EEEe--C--CEEEEECCHHHHHHHHH
Q psy1028 306 SYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVP-YAYR--G--DQWISFDNEPSLAYKTE 380 (424)
Q Consensus 306 ~~~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~-y~~~--~--~~~i~ydd~~Si~~K~~ 380 (424)
+|++.... ..++..+...++...+..+.||++...+ |.|. + .++|||+|++|++.|++
T Consensus 213 ~w~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~h~Vw~~d~~Sl~~K~~ 275 (298)
T cd06549 213 DWTKGGNT-----------------KAISSEAAWLLAAHASAAVKFDDKASNATYFFYDDEGVSHEVWMLDAVTLFNQLK 275 (298)
T ss_pred cccCCCCC-----------------cccCHHHHHHHHHHcCCcceecccccCCceEEEcCCCcEEEEEeccHHHHHHHHH
Confidence 99874210 1144556655555556678898877776 5553 1 37999999999999999
Q ss_pred HHHhcCCceEEEeeccCCCC
Q psy1028 381 YLMSKGLAGAMVWCLNTDDY 400 (424)
Q Consensus 381 ~a~~~glgGv~iW~l~~Dd~ 400 (424)
+|+++||+|+++|+||+||.
T Consensus 276 ~a~~~~l~Gva~W~lg~ed~ 295 (298)
T cd06549 276 AVQRLGPAGVALWRLGSEDP 295 (298)
T ss_pred HHHHcCCCcEEEEeccCCCC
Confidence 99999999999999999995
No 14
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=100.00 E-value=8.9e-48 Score=360.92 Aligned_cols=251 Identities=27% Similarity=0.412 Sum_probs=210.2
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCccEEEEEEEEecCCCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEecCCCCCchh
Q psy1028 70 LFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAK 149 (424)
Q Consensus 70 vvgY~~~~~~~~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~ 149 (424)
|+|||++|.. ....+.+++..+||||+++|+.++++|++...+. . ..+..+++..++ +++||+++||+.....+..
T Consensus 1 vigyy~~w~~-~~~~~~~~~~~~lThv~~~f~~i~~~G~l~~~~~-~-~~~~~~~~~~~~-~~~kvl~sigg~~~~~~~~ 76 (253)
T cd06545 1 VVGYLPNYDD-LNALSPTIDFSKLTHINLAFANPDANGTLNANPV-R-SELNSVVNAAHA-HNVKILISLAGGSPPEFTA 76 (253)
T ss_pred CEEEeCCccc-ccCCcccCChhhCCeEEEEEEEECCCCeEEecCc-H-HHHHHHHHHHHh-CCCEEEEEEcCCCCCcchh
Confidence 6899999965 3346889999999999999999999999887642 1 233344444443 3899999999444444777
Q ss_pred hhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC-CCcEEEEEecCCccccccc
Q psy1028 150 AVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-GRFLMTVAVAAPGPIIDRA 228 (424)
Q Consensus 150 ~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls~av~~~~~~~~~~ 228 (424)
++++++.|++|+++|++++++|+|||||||||++.. ..++|..|+++||++|+ .+++||+++++... .
T Consensus 77 ~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~~~~-------~~~~~~~fv~~Lr~~l~~~~~~lt~av~~~~~----~ 145 (253)
T cd06545 77 ALNDPAKRKALVDKIINYVVSYNLDGIDVDLEGPDV-------TFGDYLVFIRALYAALKKEGKLLTAAVSSWNG----G 145 (253)
T ss_pred hhcCHHHHHHHHHHHHHHHHHhCCCceeEEeeccCc-------cHhHHHHHHHHHHHHHhhcCcEEEEEccCccc----c
Confidence 999999999999999999999999999999999964 46899999999999999 58999999987433 2
Q ss_pred cChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCC-CCCceEeecccceeee
Q psy1028 229 YDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGI-PANKLLLGLPTYGHSY 307 (424)
Q Consensus 229 ~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gv-p~~KlvlGlp~YG~~~ 307 (424)
+...++.+++|+|+||+||++++ |....+++++|+. +++..+++|+..|+ |++||+||||+||+.|
T Consensus 146 ~~~~~~~~~vD~i~vMtYD~~g~-~~~~~~g~~a~~~------------~~~~~v~~~~~~g~ip~~KlvlGlp~YG~~w 212 (253)
T cd06545 146 AVSDSTLAYFDFINIMSYDATGP-WWGDNPGQHSSYD------------DAVNDLNYWNERGLASKDKLVLGLPFYGYGF 212 (253)
T ss_pred cccHHHHhhCCEEEEEcCcCCCC-CCCCCCCCCCchH------------hHHHHHHHHHHcCCCCHHHEEEEeCCccccc
Confidence 23467789999999999999998 7345689999987 89999999999898 9999999999999988
Q ss_pred eecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceEEEcCCCeeeEEEeCCEEEEECCHHHHHHHHHHHHhcCC
Q psy1028 308 TLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGL 387 (424)
Q Consensus 308 ~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y~~~~~~~i~ydd~~Si~~K~~~a~~~gl 387 (424)
. |++..++..|+++|+++ +
T Consensus 213 ~------------------------------------------------------------~~~~~~~~~~~~~~~~~-~ 231 (253)
T cd06545 213 Y------------------------------------------------------------YNGIPTIRNKVAFAKQN-Y 231 (253)
T ss_pred c------------------------------------------------------------CCCHHHHHHHHHHHHHh-c
Confidence 2 46677899999999999 9
Q ss_pred ceEEEeeccCCCCCCccCCCCchhHHHH
Q psy1028 388 AGAMVWCLNTDDYAAKYHTSPYPLIKRI 415 (424)
Q Consensus 388 gGv~iW~l~~Dd~~g~cg~g~~~Ll~a~ 415 (424)
||+|+|++++|... ..+|+.||
T Consensus 232 gG~~~w~~~~d~~~------~~~l~~~~ 253 (253)
T cd06545 232 GGVMIWELSQDASG------ENSLLNAI 253 (253)
T ss_pred CeEEEEeccCCCCC------CcchhhcC
Confidence 99999999999843 56898874
No 15
>COG3858 Predicted glycosyl hydrolase [General function prediction only]
Probab=100.00 E-value=2.2e-37 Score=293.68 Aligned_cols=293 Identities=22% Similarity=0.380 Sum_probs=226.6
Q ss_pred cEEEEEEeCCCC-CCCCCCCCCCCCCccEEEEEEEEecCCCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEe-cC---
Q psy1028 68 YQLFCYYSLPQN-SSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVT-DA--- 142 (424)
Q Consensus 68 ~~vvgY~~~~~~-~~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg-~~--- 142 (424)
-.+.+|+..... ........-.....+.+-.+..+.+++|++....+... +...+.+ ++|.++.+. ..
T Consensus 102 ~~t~~~~~~~~~~~~~~~~~~~~~p~~t~~~~F~~~~~~~g~l~~~p~~~~-----~~~~~~~--~i~~~~~iSN~~~~~ 174 (423)
T COG3858 102 GETTAYYAPRPPTETGELVRRHAGPYLTYVDLFSYHAQENGNLTETPNENV-----IEIAQCR--KIKPVPGISNGTRPG 174 (423)
T ss_pred ceeEEEecCCCchhhhhhhhccCCcceeeeccchhccccccccccCCCcch-----hhhhhhc--ccceeEEEecCCccc
Confidence 467888886432 11111111112224444444445567888875432111 2333333 688888887 22
Q ss_pred ---CCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC-CCcEEEEEe
Q psy1028 143 ---GTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-GRFLMTVAV 218 (424)
Q Consensus 143 ---~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls~av 218 (424)
+.+.++.++.++..++++++++++.++++|+.||.||+|... +. |++.|..|++++|.+|+ .++.+|+|+
T Consensus 175 ~~f~~ela~~lL~net~~~~~i~~ii~~l~~~Gyrgv~iDfE~v~-----~~-DR~~yt~flR~~r~~l~~~G~~~siAv 248 (423)
T COG3858 175 ANFGGELAQLLLNNETAKNRLINNIITLLDARGYRGVNIDFENVG-----PG-DRELYTDFLRQVRDALHSGGYTVSIAV 248 (423)
T ss_pred cccchHHHHHHHhcHHHHHHHHHHHHHHHHhcCcccEEechhhCC-----HH-HHHHHHHHHHHHHHHhccCCeEEEEEe
Confidence 233458999999999999999999999999999999999985 56 99999999999999999 779999999
Q ss_pred cCCcc-----ccccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCC
Q psy1028 219 AAPGP-----IIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPA 293 (424)
Q Consensus 219 ~~~~~-----~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~ 293 (424)
++... .|...+|+..+.+++|+|.||+||.|.+ .+.+|+.||.. |++..+++.+.. +|+
T Consensus 249 aakt~~~~~G~W~~~~dy~a~Gkiad~v~lMtYd~h~~---gG~PG~vA~i~------------~vr~~ieya~T~-iP~ 312 (423)
T COG3858 249 AAKTSDLQVGSWHGAYDYVALGKIADFVILMTYDWHYS---GGPPGPVASIG------------WVRKVIEYALTV-IPA 312 (423)
T ss_pred cCCCCCCcCccccchhhhhhhceeeeEEEEEEeccCcC---CCCCCcccCch------------hHhhhhhhhhee-cch
Confidence 98652 3455789999999999999999999999 58899999998 999999999995 999
Q ss_pred CceEeecccceeeeeecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceEEEcCCCeeeEEEe----C-CEEEE
Q psy1028 294 NKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYR----G-DQWIS 368 (424)
Q Consensus 294 ~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y~~~----~-~~~i~ 368 (424)
+||+||+|+||++|...... .|.. ... ++.++...+....+.++.||..++.||.|. + .++||
T Consensus 313 ~Kv~mGip~YGYDW~~~y~~---~g~~--------~~a-~~~~~~i~ia~~y~A~Iq~D~~~qsp~F~y~D~eg~~h~VW 380 (423)
T COG3858 313 EKVMMGIPLYGYDWTLPYDP---LGYL--------ARA-ISPDEAIDIANRYNATIQYDATSQSPFFYYVDKEGRYHEVW 380 (423)
T ss_pred HHeEEccccccccccCCCCC---Ccce--------eee-cCcchhhhhhcccCCccCcCccccCceEEEEcCCCceEEEE
Confidence 99999999999999985431 0111 111 555665555566678999999999997764 3 68999
Q ss_pred ECCHHHHHHHHHHHHhcCCceEEEeeccCCCCC
Q psy1028 369 FDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYA 401 (424)
Q Consensus 369 ydd~~Si~~K~~~a~~~glgGv~iW~l~~Dd~~ 401 (424)
|||++|+..|++++|++||.||++|.|+++|.+
T Consensus 381 feD~~s~~~k~~lik~ygl~GVs~W~Lg~e~p~ 413 (423)
T COG3858 381 FEDARSFQTKLDLIKEYGLRGVSYWVLGQEDPR 413 (423)
T ss_pred cCchHHHHHHHHHHHHcCCceEEEEEecCcchh
Confidence 999999999999999999999999999999975
No 16
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=100.00 E-value=9.9e-37 Score=278.65 Aligned_cols=174 Identities=36% Similarity=0.622 Sum_probs=145.0
Q ss_pred EEEEEeCCCCCCCCCCCCCCCCCccEEEEEEEEecCCCeEee-cCCChhhHHHHHHHHHHhCCCceEEEEEe-cCCCCCc
Q psy1028 70 LFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAH-LEPDHVKYYRDVVAMKLLNPNLKVLISVT-DAGTGNF 147 (424)
Q Consensus 70 vvgY~~~~~~~~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~-~~~~~~~~~~~~~~lk~~n~~~kvllsvg-~~~~~~~ 147 (424)
++|||.+|.......+..++...||||+++|+.++++|.+.. .+...+.....+.++++++|++||++||| +.....+
T Consensus 1 vv~y~~~w~~~~~~~~~~~~~~~~thvi~~f~~v~~~~~~~~~~~~~~~~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~ 80 (210)
T cd00598 1 VICYYDGWSSGRGPDPTDIPLSLCTHIIYAFAEISSDGSLNLFGDKSEEPLKGALEELASKKPGLKVLISIGGWTDSSPF 80 (210)
T ss_pred CEEEEccccccCCCChhhCCcccCCEEEEeeEEECCCCCEecccCcccHHHHHHHHHHHHhCCCCEEEEEEcCCCCCCCc
Confidence 589999987655444688899999999999999999888764 22233456677888998889999999999 4444444
Q ss_pred hhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCC-CcEEEEEecCCccccc
Q psy1028 148 AKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSG-RFLMTVAVAAPGPIID 226 (424)
Q Consensus 148 ~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~-~~~ls~av~~~~~~~~ 226 (424)
.++.+++.|++|++++++++++|+|||||||||++...+. . ++++|..||++||++|++ +++||+++++......
T Consensus 81 -~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD~E~~~~~~~--~-~~~~~~~ll~~lr~~l~~~~~~ls~a~~~~~~~~~ 156 (210)
T cd00598 81 -TLASDPASRAAFANSLVSFLKTYGFDGVDIDWEYPGAADN--S-DRENFITLLRELRSALGAANYLLTIAVPASYFDLG 156 (210)
T ss_pred -hhhcCHHHHHHHHHHHHHHHHHcCCCceEEeeeCCCCcCc--c-HHHHHHHHHHHHHHHhcccCcEEEEEecCChHHhh
Confidence 7899999999999999999999999999999999975311 3 489999999999999994 8999999999776443
Q ss_pred cccChhhhhccccEEEeeecc
Q psy1028 227 RAYDVPLMGRLVDFVSIMGYD 247 (424)
Q Consensus 227 ~~~d~~~l~~~vD~v~vmtYD 247 (424)
..++++++.+++|++++|+||
T Consensus 157 ~~~~~~~l~~~vD~v~vm~Yd 177 (210)
T cd00598 157 YAYDVPAIGDYVDFVNVMTYD 177 (210)
T ss_pred ccCCHHHHHhhCCEEEEeeec
Confidence 348999999999999999993
No 17
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=100.00 E-value=6.8e-34 Score=265.66 Aligned_cols=199 Identities=19% Similarity=0.316 Sum_probs=151.9
Q ss_pred EEEEEEeCCCCCCC-----CCCCCCCCCCccEEEEEEEEecCCCeEeecCCC--h---hhHHHHHHHHHHhCCCceEEEE
Q psy1028 69 QLFCYYSLPQNSSG-----LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPD--H---VKYYRDVVAMKLLNPNLKVLIS 138 (424)
Q Consensus 69 ~vvgY~~~~~~~~~-----~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~--~---~~~~~~~~~lk~~n~~~kvlls 138 (424)
|+||||++|..... +.+..++..+||||+|+|+.++.+|++.+.+.. . ...++++..+|+ +++|||+|
T Consensus 1 r~v~y~~~~~~~~~~~~~~~~~~~~~~~~~THvi~af~~i~~~G~l~~~d~~~~~~~~~~~~~~i~~~~~--~g~KVllS 78 (256)
T cd06546 1 RLVIYYQTTHPSNGDPISSLLLVTEKGIALTHLIVAALHINDDGNIHLNDHPPDHPRFTTLWTELAILQS--SGVKVMGM 78 (256)
T ss_pred CEEEEEccEECCCCCcccccccccCCCCCCceEEEEEEEECCCCeEEECCCCCCcchhhHHHHHHHHHHh--CCCEEEEE
Confidence 68999999733211 223356778999999999999999998886531 1 145666766765 49999999
Q ss_pred EecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEe
Q psy1028 139 VTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAV 218 (424)
Q Consensus 139 vg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av 218 (424)
||++....|+.++++++.|++|++++++++++|+|||||||||+|. +..+|..||++||++++++++||+++
T Consensus 79 iGG~~~~~fs~~a~~~~~r~~f~~s~~~~~~~~~~DGiDiDwE~p~--------~~~~~~~ll~~Lr~~~~~~~~lT~Ap 150 (256)
T cd06546 79 LGGAAPGSFSRLDDDDEDFERYYGQLRDMIRRRGLDGLDLDVEEPM--------SLDGIIRLIDRLRSDFGPDFIITLAP 150 (256)
T ss_pred ECCCCCCCcccccCCHHHHHHHHHHHHHHHHHhCCCceEEeeecCC--------CHhHHHHHHHHHHHHhCCCcEEEECC
Confidence 9954444588888899999999999999999999999999999985 45799999999999999889999987
Q ss_pred cCCcc----ccccccChhhhh----ccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcC
Q psy1028 219 AAPGP----IIDRAYDVPLMG----RLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKG 290 (424)
Q Consensus 219 ~~~~~----~~~~~~d~~~l~----~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~g 290 (424)
++... ..-..+++.++. .++||+|+|.||.++. .. .. .....|+..+
T Consensus 151 ~~~~~~~g~~~~~~~~~~~l~~~~~~~~Df~nvQfYn~~g~---~~---------------------~~-~~~~~~~~~~ 205 (256)
T cd06546 151 VASALTGGEANLSGFDYRELEQARGDKIDFYNAQFYNGFGS---MS---------------------SP-SDYDAIVAQG 205 (256)
T ss_pred ccccccCCcccccccCHHHHHHhhCCceeEEEEcCcCCCCC---cc---------------------CH-HHHHHHHHcC
Confidence 65421 111246777765 4999999999987655 11 01 1223344558
Q ss_pred CCCCceEeeccc
Q psy1028 291 IPANKLLLGLPT 302 (424)
Q Consensus 291 vp~~KlvlGlp~ 302 (424)
+|++||++|+|.
T Consensus 206 ~~~~Kv~iGlpa 217 (256)
T cd06546 206 WDPERIVIGLLT 217 (256)
T ss_pred CCcccEEEEEec
Confidence 999999999984
No 18
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=100.00 E-value=5.4e-32 Score=261.02 Aligned_cols=215 Identities=23% Similarity=0.290 Sum_probs=154.1
Q ss_pred cEEEEEEeCCCCCCCC---CCCCCCCCCccEEEEEEEEecCCCeEeec-------C-CChhhHHHHHHHHHHhCCCceEE
Q psy1028 68 YQLFCYYSLPQNSSGL---LPHQLNPNLCTHILLAFAQVSKNNTVAHL-------E-PDHVKYYRDVVAMKLLNPNLKVL 136 (424)
Q Consensus 68 ~~vvgY~~~~~~~~~~---~~~~i~~~~~Thv~~~f~~~~~~g~~~~~-------~-~~~~~~~~~~~~lk~~n~~~kvl 136 (424)
|+++|||++|...+.- .+..+ .+.||||+++|+.++.++..... . .......+.+..+|++ ++|||
T Consensus 1 k~~vgY~~~w~~~~~~~~~~~~~~-~~~yt~i~~AF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~q~~--G~KVl 77 (312)
T cd02871 1 KVLVGYWHNWDNGAGSGRQDLDDV-PSKYNVINVAFAEPTSDGGGEVTFNNGSSPGGYSPAEFKADIKALQAK--GKKVL 77 (312)
T ss_pred CeEEEecCcccCCCCCCCCCcccC-CCCCCEEEEcceeecCCCceeEeecccCCcccCChHHHHHHHHHHHHC--CCEEE
Confidence 5899999998654322 23444 58999999999999987654321 1 1223556667777775 89999
Q ss_pred EEEe-cCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEE
Q psy1028 137 ISVT-DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMT 215 (424)
Q Consensus 137 lsvg-~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls 215 (424)
+||| +.++. .+.+++.|++|+++|++++++|+|||||||||++....+.++ +.++|+.||++||++++++++||
T Consensus 78 lSiGG~~~~~----~~~~~~~~~~fa~sl~~~~~~~g~DGiDiD~E~~~~~~~~~~-~~~~~~~~lk~lr~~~~~~~~lT 152 (312)
T cd02871 78 ISIGGANGHV----DLNHTAQEDNFVDSIVAIIKEYGFDGLDIDLESGSNPLNATP-VITNLISALKQLKDHYGPNFILT 152 (312)
T ss_pred EEEeCCCCcc----ccCCHHHHHHHHHHHHHHHHHhCCCeEEEecccCCccCCcHH-HHHHHHHHHHHHHHHcCCCeEEE
Confidence 9999 43322 367889999999999999999999999999999875444456 88999999999999999999999
Q ss_pred EEecCCccc--------ccccc--ChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHH
Q psy1028 216 VAVAAPGPI--------IDRAY--DVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNY 285 (424)
Q Consensus 216 ~av~~~~~~--------~~~~~--d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~ 285 (424)
+|+.+.... ....| .++.+.+++||+|||.||.++. + ++...-+... ...+..++..
T Consensus 153 ~AP~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~D~invqfYn~~~~-~-----~~~~~~~~~~-------~~~~~~~~~~ 219 (312)
T cd02871 153 MAPETPYVQGGYAAYGGIWGAYLPLIDNLRDDLTWLNVQYYNSGGM-G-----GCDGQSYSQG-------TADFLVALAD 219 (312)
T ss_pred ECCCcccccCcccccccCCcchhHHHHHhhhheeEEEEeeccCCCc-c-----cccccCCccc-------hhHHHHHHHH
Confidence 997654321 11123 3667888999999999997765 2 1111111000 0133444444
Q ss_pred HHHcC-----------CCCCceEeecccc
Q psy1028 286 YLYKG-----------IPANKLLLGLPTY 303 (424)
Q Consensus 286 ~~~~g-----------vp~~KlvlGlp~Y 303 (424)
++..| +|++||+||+|..
T Consensus 220 ~~~~~~~~~~~~~~~~~p~~Kv~iG~pa~ 248 (312)
T cd02871 220 MLLTGFPIAGNDRFPPLPADKVVIGLPAS 248 (312)
T ss_pred HHHcCCCccCCcccccCChhhEEEeccCC
Confidence 44445 8999999999963
No 19
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=100.00 E-value=3.4e-32 Score=252.63 Aligned_cols=200 Identities=22% Similarity=0.243 Sum_probs=146.3
Q ss_pred CCCCCCCCCCC--ccEEEEEEE-EecC-----CCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEe-cCCC--CCchhh
Q psy1028 82 GLLPHQLNPNL--CTHILLAFA-QVSK-----NNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVT-DAGT--GNFAKA 150 (424)
Q Consensus 82 ~~~~~~i~~~~--~Thv~~~f~-~~~~-----~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg-~~~~--~~~~~~ 150 (424)
...+++||.+. ||||+|+|+ ..+. +|.+.....+....++++..+|++||++|||+||| |... ..+...
T Consensus 12 ~~~~~dip~~~~~~thii~aFa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lK~~~p~lKvllSiGG~~~~~~~~~~~~ 91 (253)
T cd06544 12 GVTFSDVPINPKVEFHFILSFAIDYDTESNPTNGKFNPYWDTENLTPEAVKSIKAQHPNVKVVISIGGRGVQNNPTPFDP 91 (253)
T ss_pred CccccccCCCCCeeEEEEEEeeeecccccCCCCCccccccCccccCHHHHHHHHHhCCCcEEEEEeCCCCCCCCccccCc
Confidence 35688999888 999999999 4432 45444432233457889999999999999999999 3332 223333
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccC
Q psy1028 151 VSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYD 230 (424)
Q Consensus 151 ~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d 230 (424)
.+....|++|+++++++|++|||||||||||++. . ++++|..||++||++|++..+|+++..+........++
T Consensus 92 ~~~~~~~~~fv~S~~~~l~~~~fDGiDiDwE~~~------~-d~~~f~~ll~~l~~~l~~~~~lt~a~vap~~~~~~~~y 164 (253)
T cd06544 92 SNVDSWVSNAVSSLTSIIQTYNLDGIDIDYEHFP------A-DPDTFVECIGQLITELKNNGVIKVASIAPSEDAEQSHY 164 (253)
T ss_pred hhhhhHHHHHHHHHHHHHHHhCCCceeeecccCC------c-CHHHHHHHHHHHHHHhhhcCCeEEEEecCCcccccccc
Confidence 3444566778999999999999999999999984 3 88999999999999999333555554333222203456
Q ss_pred hhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCCCceEeecccceeeee
Q psy1028 231 VPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYT 308 (424)
Q Consensus 231 ~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~YG~~~~ 308 (424)
++.+.+++|++++|+||+++. + .+ ...+ ......+.|.. ++|++||++|+|.+++.|.
T Consensus 165 ~~~~~~~~d~id~~~~qfy~~-~-~~--~~~~---------------~~~~~~~~~~~-~~p~~Kv~lGl~a~~~~~~ 222 (253)
T cd06544 165 LALYNAYGDYIDYVNYQFYNY-G-VP--TTVA---------------KYVEFYDEVAN-NYPGKKVLASFSTDGEDGA 222 (253)
T ss_pred HHHHHHhhCceeEEEhhhhCC-C-CC--CCHH---------------HHHHHHHHHHh-CCCcccEEEEEecCCCccC
Confidence 888999999999999999988 4 21 1000 22345566655 6999999999999997764
No 20
>KOG2091|consensus
Probab=99.97 E-value=5.2e-31 Score=239.06 Aligned_cols=292 Identities=17% Similarity=0.240 Sum_probs=236.8
Q ss_pred CcEEEEEEeCCCCCCCCCCCCCCCCCccEEEEEEEEecCCCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEe--cCCC
Q psy1028 67 NYQLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVT--DAGT 144 (424)
Q Consensus 67 ~~~vvgY~~~~~~~~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg--~~~~ 144 (424)
+..+.||.+.|++ ..|.+.++..+++|||.+.|+.+...|+-.......+.....|++++++++++++++.+- .+.+
T Consensus 78 ~~~vLayVTPWNs-~Gydvakifaskft~iSPVW~ql~~qgs~~~v~G~hdid~gwiralRk~~~~l~ivPR~~fd~~~~ 156 (392)
T KOG2091|consen 78 GGTVLAYVTPWNS-HGYDVAKIFASKFTYISPVWLQLKDQGSDVGVYGKHDIDPGWIRALRKSGKDLHIVPRFYFDEFTS 156 (392)
T ss_pred CCceEEEecCcCc-cchhHHHHHhcccceecchheeehhcCcceEEeecccCChHHHHHHHHhCCCceeeceehhhhccc
Confidence 4569999999998 569999999999999999999999877432221122233455899999999999999998 6667
Q ss_pred CCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEe-ccCCCCCCCCchhhHHHHHHHHHHHHHHcC-CCcEEEEEecCCc
Q psy1028 145 GNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLD-WEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-GRFLMTVAVAAPG 222 (424)
Q Consensus 145 ~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiD-wE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls~av~~~~ 222 (424)
..+..++.+++.|++..+.++++++++||||+.|+ |...... . +......|+++|..+|+ ..+.+.+.+|+..
T Consensus 157 ~d~ke~l~ke~l~ekv~~tlv~~ck~~~fdGlVlevwsq~a~~---i--~d~~al~~v~hl~k~Lhkq~l~~iLvvPp~~ 231 (392)
T KOG2091|consen 157 ADLKEFLVKEALREKVGQTLVNFCKKHGFDGLVLEVWSQLADV---I--ADKDALELVEHLGKALHKQELQAILVVPPVI 231 (392)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHcCCCeeeHHHHHHHHHH---H--hhhHHHHHHHHHHHHHHHhheEEEEEeCCCC
Confidence 78999999999999999999999999999999999 6554321 1 22445578889999998 7788888888832
Q ss_pred cccc------cccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCCCce
Q psy1028 223 PIID------RAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKL 296 (424)
Q Consensus 223 ~~~~------~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~Kl 296 (424)
.... ..-+++.|.+..|.+.+||||+... ..+|+++|+. |++.+++.+.-..--+.||
T Consensus 232 ~~e~~~~~~ft~ee~~~L~~~~d~fsLmTYd~s~~----~~pg~nap~~------------wi~~~l~~l~~~s~~r~Ki 295 (392)
T KOG2091|consen 232 EEENGQLKFFTPEEFSKLVAVYDGFSLMTYDYSLV----QGPGPNAPLE------------WIRHCLHHLGGSSAKRPKI 295 (392)
T ss_pred cCCCCCcCcCCHHHHHHHHHhhhheeEEEeecccc----cCCCCCCCHH------------HHHHHHHHhCCccccccce
Confidence 2111 1236888999999999999999876 6799999999 9999999985443456899
Q ss_pred EeecccceeeeeecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceEEEcCCCeeeE-EEe----CCEEEEECC
Q psy1028 297 LLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPY-AYR----GDQWISFDN 371 (424)
Q Consensus 297 vlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y-~~~----~~~~i~ydd 371 (424)
++||.|||.+|...+ ..+.++-....++++.......||+++...+ .|. +++-|.|.+
T Consensus 296 LlGlNFYG~d~~~gd-----------------g~~~IT~~rYL~lLk~~k~~~~~Dees~EH~f~~k~n~~gkhivfyPT 358 (392)
T KOG2091|consen 296 LLGLNFYGNDFNLGD-----------------GGEAITAKRYLQLLKGEKSVFKFDEESKEHFFEYKRNDDGKHIVFYPT 358 (392)
T ss_pred eEeeeccccccccCC-----------------CCCceeHHHHHHHHhccCcceeeccccchhheeeeccCCCceEEEecc
Confidence 999999999998722 1123777788888888888899999999984 453 478999999
Q ss_pred HHHHHHHHHHHHhcCCceEEEeeccCC
Q psy1028 372 EPSLAYKTEYLMSKGLAGAMVWCLNTD 398 (424)
Q Consensus 372 ~~Si~~K~~~a~~~glgGv~iW~l~~D 398 (424)
..|+..++++|++.| .||+||++||-
T Consensus 359 L~Sl~~Ri~lA~~~g-vgISIWe~GqG 384 (392)
T KOG2091|consen 359 LTSLELRIELARELG-VGISIWEYGQG 384 (392)
T ss_pred hHhHHHHHHHHHHhC-CceEeeeccCc
Confidence 999999999999999 79999999885
No 21
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=99.94 E-value=1.3e-25 Score=211.24 Aligned_cols=245 Identities=18% Similarity=0.179 Sum_probs=173.6
Q ss_pred EEEEEEeCCCCC---CCCCCCCCCCCCccEEEEEEEEecCCCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEe-cCCC
Q psy1028 69 QLFCYYSLPQNS---SGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVT-DAGT 144 (424)
Q Consensus 69 ~vvgY~~~~~~~---~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg-~~~~ 144 (424)
+.+|||.+|.+. ....+.++| ..+++|++++..++.++.-.... ..+...+.+..++++ |+||+++|| +...
T Consensus 2 ~~~~y~~~~~~~~~~~~~~l~~~p-ds~D~v~lf~~~~~~~~~~~~~~-~~~~~~~~i~~l~~k--G~KVl~sigg~~~~ 77 (255)
T cd06542 2 ISFGYFEVWDDKGASLQESLLNLP-DSVDMVSLFAANINLDAATAVQF-LLTNKETYIRPLQAK--GTKVLLSILGNHLG 77 (255)
T ss_pred eEEEEEEecCCcCcccccccccCC-CcceEEEEcccccCcccccchhh-hhHHHHHHHHHHhhC--CCEEEEEECCCCCC
Confidence 578999998642 234566775 67999999655555432211000 122344455666665 999999999 4444
Q ss_pred CCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCC--CCchhhHHHHHHHHHHHHHHcCC-CcEEEEEecCC
Q psy1028 145 GNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPG--PNKSHEKRMFSKLLQQLKFTLSG-RFLMTVAVAAP 221 (424)
Q Consensus 145 ~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~--~~~~~~~~~~~~~l~~Lr~~l~~-~~~ls~av~~~ 221 (424)
..| ....+++.|++|+++|++++++|||||||||||++.... ..+. +.++|..||++||+++++ +++|++++++.
T Consensus 78 ~~~-~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~E~~~~~~~~~~~~-~~~~~~~lv~~Lr~~~~~~~kllt~~~~~~ 155 (255)
T cd06542 78 AGF-ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDDEYSGYGKNGTSQP-SNEAFVRLIKELRKYMGPTDKLLTIDGYGQ 155 (255)
T ss_pred CCc-cccCCHHHHHHHHHHHHHHHHHhCCCceEEeeeecccCCCCCCcc-hHHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 444 235678899999999999999999999999999986521 1235 789999999999999984 99999998875
Q ss_pred ccccccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCCCceEeecc
Q psy1028 222 GPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLP 301 (424)
Q Consensus 222 ~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp 301 (424)
.... +.+++.+++||+++|+|+.+.. .... .+ .....|+|++|+++|++
T Consensus 156 ~~~~----~~~~~~~~vDyv~~~~y~~~~~---~~~~-----~~-------------------~~~~~g~~~~k~i~~~~ 204 (255)
T cd06542 156 ALSN----DGEEVSPYVDYVIYQYYGSSSS---STQR-----NW-------------------NTNSPKIPPEKMVYTES 204 (255)
T ss_pred chhc----CHHHHHHhCCEEEeeccCCCCc---cCCc-----cc-------------------ccccCCCCHHHceeeee
Confidence 4421 6789999999999999986544 1111 00 01124899999999998
Q ss_pred cceeeeeecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceEEEcCCCeeeEEEeCCEEEEECCHHHHHHHHHH
Q psy1028 302 TYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQWISFDNEPSLAYKTEY 381 (424)
Q Consensus 302 ~YG~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y~~~~~~~i~ydd~~Si~~K~~~ 381 (424)
+++.... ....++...+++
T Consensus 205 ~~~~~~~-------------------------------------------------------------~~~~~~~~~A~~ 223 (255)
T cd06542 205 FEEENGG-------------------------------------------------------------NSGSSAEQYARW 223 (255)
T ss_pred eecccCC-------------------------------------------------------------CcchhHHHHHhc
Confidence 8753210 123345566667
Q ss_pred HHhc-CCceEEEeeccCCCCCCccCCCCchhHHHHHHhh
Q psy1028 382 LMSK-GLAGAMVWCLNTDDYAAKYHTSPYPLIKRIKTVL 419 (424)
Q Consensus 382 a~~~-glgGv~iW~l~~Dd~~g~cg~g~~~Ll~a~~~~l 419 (424)
+.+. +.||+|+|.++.|- .++.++++.+.|
T Consensus 224 ~~~~~~~gG~~~y~~~~dy--------~~~~~~~~~~~~ 254 (255)
T cd06542 224 TPAKGGKGGIGTYALDRDY--------YRPYDSAVSKAL 254 (255)
T ss_pred CcccCceEEEEEEecCCCc--------cccchhhhhhhh
Confidence 7766 89999999999884 357788777765
No 22
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=99.89 E-value=8.2e-22 Score=185.70 Aligned_cols=216 Identities=19% Similarity=0.262 Sum_probs=148.9
Q ss_pred CCCccEEEEEEEEecCCCe---EeecCCC-------hhhHHHHHHHHHHhCCCceEEEEEe-cCCCCCchhhhcCHHHHH
Q psy1028 90 PNLCTHILLAFAQVSKNNT---VAHLEPD-------HVKYYRDVVAMKLLNPNLKVLISVT-DAGTGNFAKAVSTRANRL 158 (424)
Q Consensus 90 ~~~~Thv~~~f~~~~~~g~---~~~~~~~-------~~~~~~~~~~lk~~n~~~kvllsvg-~~~~~~~~~~~~~~~~r~ 158 (424)
...++.|+++|+..-++|. +.+.+.. -.+..++|+.++++ ++||||||| +..+..+ .+++.|+
T Consensus 22 ~~~~dii~i~Fl~~~~~~~~p~~n~~~~c~~~~~~~c~~~~~dI~~cq~~--G~KVlLSIGG~~~~~~~----~s~~~a~ 95 (280)
T cd02877 22 TGNYDIVNISFLNVFGSGGTPGLNFAGHCGGSTYPNCPQLGADIKHCQSK--GKKVLLSIGGAGGSYSL----SSDADAK 95 (280)
T ss_pred CCCccEEEEEeEcccCCCCCcccCccccCcccccccchhHHHHHHHHHHC--CCEEEEEccCCCCCcCC----CCHHHHH
Confidence 3568999999988776532 2222211 12567777777776 899999999 4444333 7889999
Q ss_pred HHHHHHHHHHH------------cCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC----CCcEEEEEecCCc
Q psy1028 159 AFSESILEFLI------------EHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS----GRFLMTVAVAAPG 222 (424)
Q Consensus 159 ~fi~~i~~~l~------------~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~----~~~~ls~av~~~~ 222 (424)
+|+++|.++.. +++|||||||||++. ..+|..|+++||+.+. ++++||+|+++..
T Consensus 96 ~Fa~~l~~~~~~~~~~~~~rp~g~~~lDGiD~D~E~~~---------~~~~~~l~~~LR~~~~~~~~~~~~LTaAPq~~~ 166 (280)
T cd02877 96 DFADYLWNAFGGGTDSGVPRPFGDAVVDGFDFDIEHGS---------PENYDALAKRLRSLFASDPSKKYYLTAAPQCPY 166 (280)
T ss_pred HHHHHHHHHhCCccccccccccccccccceEEecccCC---------ccCHHHHHHHHHHHhhcccCCceEEEeccccCC
Confidence 99999988762 567999999999984 3679999999999996 5699999977743
Q ss_pred cccccccChhhhh-ccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCC---CceEe
Q psy1028 223 PIIDRAYDVPLMG-RLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPA---NKLLL 298 (424)
Q Consensus 223 ~~~~~~~d~~~l~-~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~---~Klvl 298 (424)
. ..+....+. .++||++||.||..+- ....+..+ ......+.|... ++. .||+|
T Consensus 167 ~---d~~~~~~i~~~~~D~i~vqfYn~~~c---~~~~~~~~---------------~~~~~~~~w~~~-~~~~~~~kv~l 224 (280)
T cd02877 167 P---DASLGDAIATGLFDFIFVQFYNNPCC---SYASGNAS---------------GFNFNWDTWTSW-AKATSNAKVFL 224 (280)
T ss_pred c---chhHHHHHccCccCEEEEEEecCccc---cccccccc---------------hhhhHHHHHHHh-cccCCCceEEE
Confidence 2 123344555 4999999999995543 11111111 233455666664 665 89999
Q ss_pred ecccceeeeeecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceEEEcCCCeeeEEEeCCEEEEECCHHHHHHH
Q psy1028 299 GLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQWISFDNEPSLAYK 378 (424)
Q Consensus 299 Glp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~~~~~y~~~~~~~i~ydd~~Si~~K 378 (424)
|+|..-.. ...+ |-++..+..-
T Consensus 225 Glpas~~a------------------------------------a~~G----------------------yv~p~~l~~~ 246 (280)
T cd02877 225 GLPASPEA------------------------------------AGSG----------------------YVDPSELASL 246 (280)
T ss_pred ecccCCCC------------------------------------CCCC----------------------ccCHHHHHHH
Confidence 99863210 0012 4667777777
Q ss_pred HHHHH-hc-CCceEEEeeccCCCC
Q psy1028 379 TEYLM-SK-GLAGAMVWCLNTDDY 400 (424)
Q Consensus 379 ~~~a~-~~-glgGv~iW~l~~Dd~ 400 (424)
+...+ +. ++||||+|+...|..
T Consensus 247 v~~~~~~~~~fGGvM~Wd~~~~~~ 270 (280)
T cd02877 247 VLPVKQKSPNFGGVMLWDASQDKQ 270 (280)
T ss_pred HHHHhhcCCCCcEEEEEhHhhccC
Confidence 66544 44 699999999999975
No 23
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=99.88 E-value=8.4e-22 Score=186.92 Aligned_cols=153 Identities=16% Similarity=0.113 Sum_probs=121.7
Q ss_pred CCCccEEEEEEEEecCCCeEeecCC---C-hhhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHH
Q psy1028 90 PNLCTHILLAFAQVSKNNTVAHLEP---D-HVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESIL 165 (424)
Q Consensus 90 ~~~~Thv~~~f~~~~~~g~~~~~~~---~-~~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~ 165 (424)
...|+||+++|+....+++...... + .....+.|..+|++ |+||++|||+.....+ ..+...|++|++++.
T Consensus 23 ~~g~~~v~lAFi~~~~~~~~~w~g~~~~~~~~~~~~~i~~lk~~--G~kViiS~GG~~g~~~---~~~~~~~~~~~~a~~ 97 (294)
T cd06543 23 ATGVKAFTLAFIVASGGCKPAWGGSYPLDQGGWIKSDIAALRAA--GGDVIVSFGGASGTPL---ATSCTSADQLAAAYQ 97 (294)
T ss_pred HcCCCEEEEEEEEcCCCCcccCCCCCCcccchhHHHHHHHHHHc--CCeEEEEecCCCCCcc---ccCcccHHHHHHHHH
Confidence 4689999999998887777655431 1 34567888899988 6999999994333323 337789999999999
Q ss_pred HHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccc-cccChhhhhc----cccE
Q psy1028 166 EFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIID-RAYDVPLMGR----LVDF 240 (424)
Q Consensus 166 ~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~-~~~d~~~l~~----~vD~ 240 (424)
++|++|+|||||||||++... +.. ..+++.++|++|++++ +++.||+++|..+.... .++++-+.++ .+|+
T Consensus 98 ~~i~~y~~dgiDfDiE~~~~~--d~~-~~~~~~~al~~Lq~~~-p~l~vs~Tlp~~p~gl~~~g~~~l~~a~~~Gv~~d~ 173 (294)
T cd06543 98 KVIDAYGLTHLDFDIEGGALT--DTA-AIDRRAQALALLQKEY-PDLKISFTLPVLPTGLTPDGLNVLEAAAANGVDLDT 173 (294)
T ss_pred HHHHHhCCCeEEEeccCCccc--cch-hHHHHHHHHHHHHHHC-CCcEEEEecCCCCCCCChhHHHHHHHHHHcCCCcce
Confidence 999999999999999998542 112 3589999999999999 78999999998665443 4567777778 8999
Q ss_pred EEeeecccCCC
Q psy1028 241 VSIMGYDYHSY 251 (424)
Q Consensus 241 v~vmtYD~~~~ 251 (424)
||||+|||++.
T Consensus 174 VNiMtmDyg~~ 184 (294)
T cd06543 174 VNIMTMDYGSS 184 (294)
T ss_pred eeeeeecCCCC
Confidence 99999999977
No 24
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=99.81 E-value=2.1e-18 Score=152.79 Aligned_cols=179 Identities=17% Similarity=0.199 Sum_probs=116.1
Q ss_pred cCCCcEEEEEEeCCCCCCC----------CCCCCCCCCCccEEEEEEEEecCCCeEeecCC---ChhhHHHHHHHHHHhC
Q psy1028 64 AVDNYQLFCYYSLPQNSSG----------LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEP---DHVKYYRDVVAMKLLN 130 (424)
Q Consensus 64 ~~~~~~vvgY~~~~~~~~~----------~~~~~i~~~~~Thv~~~f~~~~~~g~~~~~~~---~~~~~~~~~~~lk~~n 130 (424)
...+|++||||++|.+... +.+++. ...+..+-..|..- .|++....+ .+.+..+++.+|.++
T Consensus 22 ~~~~KvLvGyWHnw~sgaaDgyq~gs~adial~d~-~~~ynvv~V~Fmk~--~g~iptf~P~~~~daeFr~~v~aLnae- 97 (332)
T COG3469 22 DISNKVLVGYWHNWKSGAADGYQQGSSADIALADT-PRNYNVVTVSFMKG--AGDIPTFKPYNDPDAEFRAQVGALNAE- 97 (332)
T ss_pred ccccceEEEeeecccccccccccccceeeeEeccC-CcccceEEEEEeec--CCCCcccCcCCCCHHHHHHHHHHhhcc-
Confidence 3456799999999865431 112222 23455666666443 354443333 234667777888887
Q ss_pred CCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCC
Q psy1028 131 PNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSG 210 (424)
Q Consensus 131 ~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~ 210 (424)
|.-|+||+|+.+.. +--.....++|+++|++++++|||||+|||.|.........+.-.+...+.+|+.....++
T Consensus 98 -GkavllsLGGAdgh----IeL~~~qE~~fv~eiirlietyGFDGLDiDLEq~ai~~~dnq~v~p~alk~vk~hyk~~Gk 172 (332)
T COG3469 98 -GKAVLLSLGGADGH----IELKAGQEQAFVNEIIRLIETYGFDGLDIDLEQSAILAADNQTVIPAALKAVKDHYKNQGK 172 (332)
T ss_pred -CcEEEEEccCccce----EEeccchHHHHHHHHHHHHHHhCCCccccchhhhhhhhcCCeeehHHHHHHHHHHHHhcCC
Confidence 89999999943321 1112234789999999999999999999999976432111110223444445555555559
Q ss_pred CcEEEEEecCCcccccccc--ChhhhhccccEEEeeecccCCC
Q psy1028 211 RFLMTVAVAAPGPIIDRAY--DVPLMGRLVDFVSIMGYDYHSY 251 (424)
Q Consensus 211 ~~~ls~av~~~~~~~~~~~--d~~~l~~~vD~v~vmtYD~~~~ 251 (424)
++.||||+..++-.....| .+.+|..+.|||..+-|+..|.
T Consensus 173 ~f~itMAPEfPYl~~~gaY~pyin~l~~~yD~i~pQlYNqGGd 215 (332)
T COG3469 173 NFFITMAPEFPYLQGWGAYIPYINELRDYYDFIAPQLYNQGGD 215 (332)
T ss_pred ceEEEecCCCceecCCcccchHHHHHhhHHhhhhHHHhcCCCC
Confidence 9999999987654222223 4678889999999999987776
No 25
>KOG4701|consensus
Probab=99.10 E-value=5.2e-09 Score=98.51 Aligned_cols=199 Identities=20% Similarity=0.239 Sum_probs=120.0
Q ss_pred CcEEEEEEeCC-CCCCCCCCCCCCCCCccEEEEEEEEecC-CCeEe--ecCC--Chh--------hHHHHHHHHHHhCCC
Q psy1028 67 NYQLFCYYSLP-QNSSGLLPHQLNPNLCTHILLAFAQVSK-NNTVA--HLEP--DHV--------KYYRDVVAMKLLNPN 132 (424)
Q Consensus 67 ~~~vvgY~~~~-~~~~~~~~~~i~~~~~Thv~~~f~~~~~-~g~~~--~~~~--~~~--------~~~~~~~~lk~~n~~ 132 (424)
..-+.+||..- .+...--..--....+..|+++|+.--+ +|+.. +.+. +.. +.-.++...+. + |
T Consensus 26 ~t~IA~YWGQN~aG~q~~Ls~yC~~~~yd~~~lsFL~~F~~~~Tp~LNfAn~Csd~~~~~l~~CTqi~~di~~CQS-~-G 103 (568)
T KOG4701|consen 26 QTAIAGYWGQNLAGDQKRLSSYCQNTTYDAIILSFLIDFNVDGTPVLNFANLCSDSDTFSLKKCTQIETDIQVCQS-N-G 103 (568)
T ss_pred ccceEEEeccccccchhhhhhhhccCccceeeeehhhhcCCCCCceeehhcccCccccccccccchhhhHHHHHHh-c-C
Confidence 34588999752 2211111122234567888888865433 44433 2221 111 22233444444 4 9
Q ss_pred ceEEEEEe-cCCCCCchhhhcCHHHHHHHHHHHHHHHHcC----------CCCEEEEeccCCCCCCCCchhhHHHHHHHH
Q psy1028 133 LKVLISVT-DAGTGNFAKAVSTRANRLAFSESILEFLIEH----------NLDGIDLDWEFPGWPGPNKSHEKRMFSKLL 201 (424)
Q Consensus 133 ~kvllsvg-~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~----------gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l 201 (424)
+||||++| ..++- .+.+.+..+.|++.+-+....- -+||+|+|.|.. ....|..|-
T Consensus 104 iKVlLSLGG~~GnY----s~~~d~dA~~fA~~LWn~Fg~G~~S~RPfg~AVvDGfDF~IE~g---------~~~~ysaLA 170 (568)
T KOG4701|consen 104 IKVLLSLGGYNGNY----SLNNDDDATNFAFQLWNIFGSGEDSYRPFGKAVVDGFDFEIEKG---------TNTAYSALA 170 (568)
T ss_pred eEEEEeccCcccce----eeccchhHHHHHHHHHHHhcCCccccCcccchhccceeeeeecC---------CcchHHHHH
Confidence 99999999 44433 3466788889999998876542 289999999986 346788888
Q ss_pred HHHHHHcC---CCcEEEEEecCCccccccccChhhh-hccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccc
Q psy1028 202 QQLKFTLS---GRFLMTVAVAAPGPIIDRAYDVPLM-GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSL 277 (424)
Q Consensus 202 ~~Lr~~l~---~~~~ls~av~~~~~~~~~~~d~~~l-~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~ 277 (424)
+.||..|. +.+.|+.|+.++...... -+.| .+-.||+.|+-|+-. .....+.- +.+
T Consensus 171 ~~L~~~Fa~~~r~yYLsaAPQCP~PD~~~---G~aL~~~~fDf~~IQFYNN~-------~CS~SsG~----------~Q~ 230 (568)
T KOG4701|consen 171 KRLLEIFASDPRRYYLSAAPQCPVPDHTL---GKALSENSFDFLSIQFYNNS-------TCSGSSGS----------RQS 230 (568)
T ss_pred HHHHHHHccCCceEEeccCCCCCCCchhh---hhhhhccccceEEEEeecCC-------CcccccCc----------ccc
Confidence 88988887 888999998876542111 1222 346899999998621 11111110 011
Q ss_pred cHHHHHHHHHHcCCCCCc---eEeeccc
Q psy1028 278 NANWSVNYYLYKGIPANK---LLLGLPT 302 (424)
Q Consensus 278 ~~~~~~~~~~~~gvp~~K---lvlGlp~ 302 (424)
.++..+++... +.++| +.||||.
T Consensus 231 ~fDsW~~ya~~--~a~nKn~~lFLGLPg 256 (568)
T KOG4701|consen 231 TFDAWVEYAED--SAYNKNTSLFLGLPG 256 (568)
T ss_pred cHHHHHHHHhh--hcccccceEEeeccC
Confidence 44544444433 67777 9999985
No 26
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=98.69 E-value=1.8e-07 Score=90.78 Aligned_cols=153 Identities=14% Similarity=0.127 Sum_probs=106.6
Q ss_pred HHHHHHhCCCceEEEEEe--cC-CCCCchhhhcC-HHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHH
Q psy1028 123 VVAMKLLNPNLKVLISVT--DA-GTGNFAKAVST-RANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFS 198 (424)
Q Consensus 123 ~~~lk~~n~~~kvllsvg--~~-~~~~~~~~~~~-~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~ 198 (424)
+...+|+| |+||+-.|- +. +...+..++.+ ++.+..+|+.|+++++.|||||+.||+|.... .++ +.+++.
T Consensus 51 ~idaAHkn-GV~Vlgti~~e~~~~~~~~~~lL~~~~~~~~~~a~kLv~lak~yGfDGw~iN~E~~~~---~~~-~~~~l~ 125 (339)
T cd06547 51 WINAAHRN-GVPVLGTFIFEWTGQVEWLEDFLKKDEDGSFPVADKLVEVAKYYGFDGWLINIETELG---DAE-KAKRLI 125 (339)
T ss_pred HHHHHHhc-CCeEEEEEEecCCCchHHHHHHhccCcccchHHHHHHHHHHHHhCCCceEeeeeccCC---cHH-HHHHHH
Confidence 66777887 999999988 32 34567888888 99999999999999999999999999998852 256 899999
Q ss_pred HHHHHHHHHcCC---CcEEEE-EecC--Ccccccc---ccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCC
Q psy1028 199 KLLQQLKFTLSG---RFLMTV-AVAA--PGPIIDR---AYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVT 269 (424)
Q Consensus 199 ~~l~~Lr~~l~~---~~~ls~-av~~--~~~~~~~---~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~ 269 (424)
.|+++|++++++ +..|.- ..-. ..-.+.. ..+.+ ..+.+|-+ +..|. | .. .
T Consensus 126 ~F~~~L~~~~~~~~~~~~v~WYDs~t~~G~l~wQn~Ln~~N~~-ff~~~D~~-FlNY~-----W-~~--------~---- 185 (339)
T cd06547 126 AFLRYLKAKLHENVPGSLVIWYDSMTEDGKLSWQNELNSKNKP-FFDVCDGI-FLNYW-----W-TE--------E---- 185 (339)
T ss_pred HHHHHHHHHHhhcCCCcEEEEEecCCCCCccchhhhhhHHHHH-HHhhhcce-eEecC-----C-Cc--------c----
Confidence 999999999983 444421 1110 0000110 11122 22566644 22343 4 11 0
Q ss_pred CCCCCccccHHHHHHHHHHcCCCCCceEeecccceeeee
Q psy1028 270 DQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYT 308 (424)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~YG~~~~ 308 (424)
..+.+++.....|..+.+|-+||=..|+...
T Consensus 186 --------~l~~s~~~a~~~g~~~~dvy~GiDv~grg~~ 216 (339)
T cd06547 186 --------SLERSVQLAEGLGRSPYDVYVGVDVWGRGTK 216 (339)
T ss_pred --------hHHHHHHHHHHcCCCHhHEEEEEEEEcCCcc
Confidence 4566667777788999999999998887654
No 27
>PF11340 DUF3142: Protein of unknown function (DUF3142); InterPro: IPR021488 This bacterial family of proteins has no known function.
Probab=98.12 E-value=5.9e-05 Score=65.47 Aligned_cols=84 Identities=14% Similarity=0.197 Sum_probs=65.6
Q ss_pred CHHHHHHHHHHHHHHHHcC-CCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCcccccccc-C
Q psy1028 153 TRANRLAFSESILEFLIEH-NLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAY-D 230 (424)
Q Consensus 153 ~~~~r~~fi~~i~~~l~~~-gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~-d 230 (424)
+++..++..+.+.++-..- ...||.|||..... ..+.|..|+++||.+|..++.|||+.=+.-. ..- .
T Consensus 22 ~~~~~~~i~~~l~~W~~~G~~v~giQIDfDa~t~-------~L~~Y~~fL~~LR~~LP~~~~LSIT~L~dW~---~~~~~ 91 (181)
T PF11340_consen 22 PEQVLARILQLLQRWQAAGNNVAGIQIDFDAATS-------RLPAYAQFLQQLRQRLPPDYRLSITALPDWL---SSPDW 91 (181)
T ss_pred CHHHHHHHHHHHHHHHHcCCCceEEEEecCcccc-------chHHHHHHHHHHHHhCCCCceEeeEEehhhh---cCchh
Confidence 3455566666666666543 68999999998855 7899999999999999999999998654322 123 4
Q ss_pred hhhhhccccEEEeeec
Q psy1028 231 VPLMGRLVDFVSIMGY 246 (424)
Q Consensus 231 ~~~l~~~vD~v~vmtY 246 (424)
+..|...+|.+++|+|
T Consensus 92 L~~L~~~VDE~VlQ~y 107 (181)
T PF11340_consen 92 LNALPGVVDELVLQVY 107 (181)
T ss_pred hhhHhhcCCeeEEEee
Confidence 8889999999999999
No 28
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=98.01 E-value=2.3e-05 Score=75.35 Aligned_cols=152 Identities=14% Similarity=0.174 Sum_probs=93.4
Q ss_pred HHHHHHhCCCceEEEEEe--c-CCCCCchhhhc-CHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHH
Q psy1028 123 VVAMKLLNPNLKVLISVT--D-AGTGNFAKAVS-TRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFS 198 (424)
Q Consensus 123 ~~~lk~~n~~~kvllsvg--~-~~~~~~~~~~~-~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~ 198 (424)
.+..+|+| |+||+=.|- + .+......++. ++.....+++.|+++++.|||||.-|++|.... ... ..+.+.
T Consensus 47 widaAHrn-GV~vLGTiife~~~~~~~~~~ll~~~~~g~~~~A~kLi~ia~~yGFDGw~iN~E~~~~---~~~-~~~~l~ 121 (311)
T PF03644_consen 47 WIDAAHRN-GVKVLGTIIFEWGGGAEWCEELLEKDEDGSFPYADKLIEIAKYYGFDGWLINIETPLS---GPE-DAENLI 121 (311)
T ss_dssp HHHHHHHT-T--EEEEEEEEEE--HHHHHHHT---TTS--HHHHHHHHHHHHHT--EEEEEEEESST---TGG-GHHHHH
T ss_pred hHHHHHhc-CceEEEEEEecCCchHHHHHHHHcCCcccccHHHHHHHHHHHHcCCCceEEEecccCC---chh-HHHHHH
Confidence 67888888 999998877 2 23456778888 888889999999999999999999999998754 125 889999
Q ss_pred HHHHHHHHHcCC--CcEEEEE--ecCCc-cccccccC--hhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCC
Q psy1028 199 KLLQQLKFTLSG--RFLMTVA--VAAPG-PIIDRAYD--VPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQ 271 (424)
Q Consensus 199 ~~l~~Lr~~l~~--~~~ls~a--v~~~~-~~~~~~~d--~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~ 271 (424)
.|+++|+++++. +..|.-- +.... -.+...+. =....+.+|-+.+ .|. | .
T Consensus 122 ~F~~~l~~~~~~~~~~~v~WYDs~t~~G~l~~qn~Ln~~N~~f~~~~d~iFl-NY~-----W-~---------------- 178 (311)
T PF03644_consen 122 DFLKYLRKEAHENPGSEVIWYDSVTNSGRLSWQNELNDKNKPFFDVCDGIFL-NYN-----W-N---------------- 178 (311)
T ss_dssp HHHHHHHHHHHHT-T-EEEEES-B-SSSSB---SSS-TTTGGGBES-SEEEE--S--------S----------------
T ss_pred HHHHHHHHHhhcCCCcEEEEeecCCcCCccchHHHHHhhCcchhhhcceeeE-ecC-----C-C----------------
Confidence 999999999973 3333221 11110 00110000 0011344454422 221 3 0
Q ss_pred CCCccccHHHHHHHHHHcCCCCCceEeecccceee
Q psy1028 272 GYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHS 306 (424)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~YG~~ 306 (424)
...++.+++.+.+.+.+|.+|-+|+=..|+.
T Consensus 179 ----~~~l~~s~~~A~~~~~~~~~vy~GiDv~grg 209 (311)
T PF03644_consen 179 ----PDSLESSVANAKSRGRDPYDVYAGIDVFGRG 209 (311)
T ss_dssp ----HHHHHHHHHHHHHHTS-GGGEEEEEEHHHHT
T ss_pred ----cccHHHHHHHHHHcCCCHHHEEEEEEEEcCC
Confidence 0157888888888899999999999998887
No 29
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.90 E-value=0.00014 Score=70.20 Aligned_cols=131 Identities=15% Similarity=0.138 Sum_probs=88.2
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEe-ccCCCCC-C-------------C-----Cchhh-------HHHHHHHHHHH
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLD-WEFPGWP-G-------------P-----NKSHE-------KRMFSKLLQQL 204 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiD-wE~~~~~-~-------------~-----~~~~~-------~~~~~~~l~~L 204 (424)
..|+.|+-.++-+.+++++|.+|||.|| +-++... | + .+. + +++...|+++|
T Consensus 134 ~~PeVr~~i~~~v~Eiv~~YdvDGIhlDdy~yp~~~~g~~~~~~~~y~~~~g~~~~~~~~-d~~W~~WRr~~I~~~V~~i 212 (311)
T PF02638_consen 134 GHPEVRDYIIDIVKEIVKNYDVDGIHLDDYFYPPPSFGYDFPDVAAYEKYTGKDPFSSPE-DDAWTQWRRDNINNFVKRI 212 (311)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCeEEecccccccccCCCCCccHHHHHHhcCcCCCCCcc-chHHHHHHHHHHHHHHHHH
Confidence 4578888888999999999999999999 4454221 1 1 223 4 67888999999
Q ss_pred HHHcC---CCcEEEEEecCCc-c-ccccccChhhhh--ccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccc
Q psy1028 205 KFTLS---GRFLMTVAVAAPG-P-IIDRAYDVPLMG--RLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSL 277 (424)
Q Consensus 205 r~~l~---~~~~ls~av~~~~-~-~~~~~~d~~~l~--~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~ 277 (424)
+.+++ +...+++++.+.. . ......|...-. .++|++..|.|-..-+ ...+
T Consensus 213 ~~~ik~~kP~v~~sisp~g~~~~~y~~~~qD~~~W~~~G~iD~i~Pq~Y~~~~~-------~~~~--------------- 270 (311)
T PF02638_consen 213 YDAIKAIKPWVKFSISPFGIWNSAYDDYYQDWRNWLKEGYIDYIVPQIYWSDFS-------HFTA--------------- 270 (311)
T ss_pred HHHHHHhCCCCeEEEEeecchhhhhhheeccHHHHHhcCCccEEEeeecccccc-------hhHH---------------
Confidence 99998 7788888766433 1 111223554443 5899999999943111 0111
Q ss_pred cHHHHHHHHHHcCCC-CCceEeeccccee
Q psy1028 278 NANWSVNYYLYKGIP-ANKLLLGLPTYGH 305 (424)
Q Consensus 278 ~~~~~~~~~~~~gvp-~~KlvlGlp~YG~ 305 (424)
.++..+..|.+.-.+ .-+|.+|+.+|-.
T Consensus 271 ~~~~~~~~w~~~~~~~~v~ly~G~~~y~~ 299 (311)
T PF02638_consen 271 PYEQLAKWWAKQVKPTNVHLYIGLALYKV 299 (311)
T ss_pred HHHHHHHHHHHhhcCCCceEEEccCcCCC
Confidence 567777777764333 2389999998853
No 30
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=97.63 E-value=0.0027 Score=60.93 Aligned_cols=104 Identities=17% Similarity=0.186 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHcCCCCEEEEec-cCCCCCC--------CC-chhhHHHHHHHHHHHHHHcC-CCcEEEEEecCCcccc-
Q psy1028 158 LAFSESILEFLIEHNLDGIDLDW-EFPGWPG--------PN-KSHEKRMFSKLLQQLKFTLS-GRFLMTVAVAAPGPII- 225 (424)
Q Consensus 158 ~~fi~~i~~~l~~~gfDGIdiDw-E~~~~~~--------~~-~~~~~~~~~~~l~~Lr~~l~-~~~~ls~av~~~~~~~- 225 (424)
....-.|..-+.+.|||.|.||+ .+|.... +. .+.-.+....||+..|++++ .+..||+.|.......
T Consensus 123 w~Y~i~IA~Eaa~~GFdEIqfDYIRFP~~~~~~~l~y~~~~~~~~r~~aI~~Fl~~a~~~l~~~~v~vSaDVfG~~~~~~ 202 (316)
T PF13200_consen 123 WDYNIDIAKEAAKLGFDEIQFDYIRFPDEGRLSGLDYSENDTEESRVDAITDFLAYAREELHPYGVPVSADVFGYVAWSP 202 (316)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeeeecCCCCcccccccCCCCCcchHHHHHHHHHHHHHHHHhHcCCCEEEEecccccccC
Confidence 34455678888889999999996 7776210 01 11034778899999999998 8889999988754322
Q ss_pred ---ccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCC
Q psy1028 226 ---DRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPL 264 (424)
Q Consensus 226 ---~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl 264 (424)
.-+.+++.|++++|+|.-|-|=-|.. ....|...|-
T Consensus 203 ~~~~iGQ~~~~~a~~vD~IsPMiYPSh~~---~g~~g~~~P~ 241 (316)
T PF13200_consen 203 DDMGIGQDFEKIAEYVDYISPMIYPSHYG---PGFFGIDKPD 241 (316)
T ss_pred CCCCcCCCHHHHhhhCCEEEecccccccC---cccCCCCCcc
Confidence 34679999999999999999976655 4455544443
No 31
>KOG2331|consensus
Probab=96.93 E-value=0.0096 Score=57.94 Aligned_cols=88 Identities=15% Similarity=0.085 Sum_probs=70.4
Q ss_pred HHHHHHhCCCceEEEEEe--c-CCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHH
Q psy1028 123 VVAMKLLNPNLKVLISVT--D-AGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSK 199 (424)
Q Consensus 123 ~~~lk~~n~~~kvllsvg--~-~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~ 199 (424)
....++++ |+||+=.+- | .+-..-..++.+++..+..++.++++.+-.||||==|+.|.-.. .. ...++..
T Consensus 116 wtn~AHrH-GV~vlGTFItEw~eg~~~c~~~La~~es~~~~~e~L~~l~~~fgFdGWLiNiEn~i~----~~-~i~~l~~ 189 (526)
T KOG2331|consen 116 WTNTAHRH-GVKVLGTFITEWDEGKATCKEFLATEESVEMTVERLVELARFFGFDGWLINIENKID----LA-KIPNLIQ 189 (526)
T ss_pred ccchhhhc-CceeeeeEEEEeccchhHHHHHHccchhHHHHHHHHHHHHHHhCCceEEEEeeeccC----hh-hCccHHH
Confidence 34556666 999987776 2 34556788999999999999999999999999999999997642 33 6788999
Q ss_pred HHHHHHHHcC----CCcEEEE
Q psy1028 200 LLQQLKFTLS----GRFLMTV 216 (424)
Q Consensus 200 ~l~~Lr~~l~----~~~~ls~ 216 (424)
|++.|.++++ .++.|-.
T Consensus 190 F~~~Lt~~~~~~~p~~~ViWY 210 (526)
T KOG2331|consen 190 FVSHLTKVLHSSVPGGLVIWY 210 (526)
T ss_pred HHHHHHHHHhhcCCCceEEEE
Confidence 9999999998 4555433
No 32
>PF14883 GHL13: Hypothetical glycosyl hydrolase family 13
Probab=95.95 E-value=0.23 Score=46.58 Aligned_cols=193 Identities=14% Similarity=0.143 Sum_probs=116.1
Q ss_pred CCccEEEE-EEEEecCCCeE---eecCC---ChhhHHHHHH-HHHHhCCCceEEEEEe--cCC-C--C------------
Q psy1028 91 NLCTHILL-AFAQVSKNNTV---AHLEP---DHVKYYRDVV-AMKLLNPNLKVLISVT--DAG-T--G------------ 145 (424)
Q Consensus 91 ~~~Thv~~-~f~~~~~~g~~---~~~~~---~~~~~~~~~~-~lk~~n~~~kvllsvg--~~~-~--~------------ 145 (424)
-++++|.+ +|...++||.. .|.+. -....+.++. +++.+. ++||..-+. .+. . .
T Consensus 29 ~~~~tV~Lqaf~d~~gdg~~~~~YFpnr~lpvraDlf~rvawql~tr~-~v~VyAWMPvlaf~lp~~~~~~~~~~~~~~~ 107 (294)
T PF14883_consen 29 MGINTVYLQAFADPDGDGNADAVYFPNRHLPVRADLFNRVAWQLRTRA-GVKVYAWMPVLAFDLPKVKRADEVRTDRPDP 107 (294)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEcCCCCCchHHHHHHHHHHHHhhhh-CCEEEEeeehhhccCCCcchhhhccccCCCC
Confidence 45677776 66667777754 33332 1125566665 677676 899976655 111 0 0
Q ss_pred -Cchhhh-cCHHHHHHHHHHHHHHHHcC-CCCEEEE-------eccCCCCCCC--CchhhHHHHHHHHHHHHHHcC----
Q psy1028 146 -NFAKAV-STRANRLAFSESILEFLIEH-NLDGIDL-------DWEFPGWPGP--NKSHEKRMFSKLLQQLKFTLS---- 209 (424)
Q Consensus 146 -~~~~~~-~~~~~r~~fi~~i~~~l~~~-gfDGIdi-------DwE~~~~~~~--~~~~~~~~~~~~l~~Lr~~l~---- 209 (424)
...++- =+++.| +.|..|.+=|..| .||||=| |+|.+..... ... -...++.|..+|++..+
T Consensus 108 ~~y~RLSPf~p~~r-~~I~~IYeDLA~y~~fdGILFhDDa~L~D~E~~~~~~~~~~~~-Kt~~Li~ft~eL~~~v~~~rp 185 (294)
T PF14883_consen 108 DGYRRLSPFDPEAR-QIIKEIYEDLARYSKFDGILFHDDAVLSDFEIAAIRQNPADRQ-KTRALIDFTMELAAAVRRYRP 185 (294)
T ss_pred CCceecCCCCHHHH-HHHHHHHHHHHhhCCCCeEEEcCCccccchhhhhhccChhhHH-HHHHHHHHHHHHHHHHHHhCc
Confidence 011110 134444 5688999999998 8999988 4553222110 012 34678889999998887
Q ss_pred -----CCcEEEEEecCCccccccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHH
Q psy1028 210 -----GRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVN 284 (424)
Q Consensus 210 -----~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~ 284 (424)
+++.-...+.+....|- ..++..+.+.-||..+|++=++.. .. .+- -|+...++
T Consensus 186 ~lkTARNiya~pvl~P~se~Wf-AQnl~~fl~~YD~taimAMPymE~---~~-----~~~------------~WL~~Lv~ 244 (294)
T PF14883_consen 186 DLKTARNIYAEPVLNPESEAWF-AQNLDDFLKAYDYTAIMAMPYMEQ---AE-----DPE------------QWLAQLVD 244 (294)
T ss_pred cchhhhcccccccCCcchhhHH-HHhHHHHHHhCCeeheeccchhcc---cc-----CHH------------HHHHHHHH
Confidence 22222222222222221 347888888999999999876655 11 111 28888888
Q ss_pred HHHHcCCCCCceEeecccceeeeee
Q psy1028 285 YYLYKGIPANKLLLGLPTYGHSYTL 309 (424)
Q Consensus 285 ~~~~~gvp~~KlvlGlp~YG~~~~~ 309 (424)
.+.+...+.+|+|+-|-. ++|..
T Consensus 245 ~v~~~p~~l~KtvFELQa--~dwr~ 267 (294)
T PF14883_consen 245 AVAARPGGLDKTVFELQA--VDWRT 267 (294)
T ss_pred HHHhcCCcccceEEEEec--cCCcc
Confidence 888876668999998754 44543
No 33
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=94.22 E-value=1.4 Score=43.25 Aligned_cols=150 Identities=15% Similarity=0.232 Sum_probs=85.8
Q ss_pred cEEEEEEEEecCCCeEe-----ecCCChhhHHHHHHHHHHhCCCceEEEEEe--cCCCC-C--------chh--------
Q psy1028 94 THILLAFAQVSKNNTVA-----HLEPDHVKYYRDVVAMKLLNPNLKVLISVT--DAGTG-N--------FAK-------- 149 (424)
Q Consensus 94 Thv~~~f~~~~~~g~~~-----~~~~~~~~~~~~~~~lk~~n~~~kvllsvg--~~~~~-~--------~~~-------- 149 (424)
-.|+-....++++|... ..+.+.-..++++.+.-|++ +.|+++-|. +..+. . -+.
T Consensus 48 GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~-g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~ 126 (343)
T cd04734 48 GLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAH-GAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRA 126 (343)
T ss_pred CEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhc-CCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCC
Confidence 34455555666554322 22212225777787777776 899999987 11110 0 000
Q ss_pred ---hhcC---HHHHHHHHHHHHHHHHcCCCCEEEEeccC---------CCC------CCCCchhhHHHHHHHHHHHHHHc
Q psy1028 150 ---AVST---RANRLAFSESILEFLIEHNLDGIDLDWEF---------PGW------PGPNKSHEKRMFSKLLQQLKFTL 208 (424)
Q Consensus 150 ---~~~~---~~~r~~fi~~i~~~l~~~gfDGIdiDwE~---------~~~------~~~~~~~~~~~~~~~l~~Lr~~l 208 (424)
-++. .+..+.|++... .+++-|||||+|..-+ |.. .|++.++.......+++.+|++.
T Consensus 127 ~~~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~v 205 (343)
T cd04734 127 VPKAMEEEDIEEIIAAFADAAR-RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAV 205 (343)
T ss_pred CCCcCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHc
Confidence 0111 244566776554 4455799999999832 211 24555523466778999999999
Q ss_pred CCCcEEEEEecCCcccc-----ccccCh-hhhhcc--ccEEEeee
Q psy1028 209 SGRFLMTVAVAAPGPII-----DRAYDV-PLMGRL--VDFVSIMG 245 (424)
Q Consensus 209 ~~~~~ls~av~~~~~~~-----~~~~d~-~~l~~~--vD~v~vmt 245 (424)
+.++.|.+-+.+..... +....+ +.|.+. +|++.|..
T Consensus 206 g~~~~v~iRl~~~~~~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~ 250 (343)
T cd04734 206 GPDFIVGIRISGDEDTEGGLSPDEALEIAARLAAEGLIDYVNVSA 250 (343)
T ss_pred CCCCeEEEEeehhhccCCCCCHHHHHHHHHHHHhcCCCCEEEeCC
Confidence 88888888887643211 111122 334443 79998854
No 34
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=93.92 E-value=1.9 Score=42.46 Aligned_cols=164 Identities=10% Similarity=0.066 Sum_probs=89.8
Q ss_pred cEEEEEEeCCCCCCCCCCCCCCCCCccEEEEEEEEecCCCeEe-----ecCCChhhHHHHHHHHHHhCCCceEEEEEe--
Q psy1028 68 YQLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVA-----HLEPDHVKYYRDVVAMKLLNPNLKVLISVT-- 140 (424)
Q Consensus 68 ~~vvgY~~~~~~~~~~~~~~i~~~~~Thv~~~f~~~~~~g~~~-----~~~~~~~~~~~~~~~lk~~n~~~kvllsvg-- 140 (424)
...+.||..|.. ...-.|+.....++++|... ..+.+.-..++++.+.-+++ +.|+++-+.
T Consensus 33 ~~~~~~y~~rA~-----------gG~glii~~~~~v~~~~~~~~~~~~~~~~~~i~~~~~l~~~vh~~-g~~~~~QL~h~ 100 (353)
T cd02930 33 DRLAAFYAERAR-----------GGVGLIVTGGFAPNEAGKLGPGGPVLNSPRQAAGHRLITDAVHAE-GGKIALQILHA 100 (353)
T ss_pred HHHHHHHHHHhc-----------CCceEEEEeeEEeCCcccCCCCCcccCCHHHHHHHHHHHHHHHHc-CCEEEeeccCC
Confidence 456667765421 12334555555555554322 21212235677777766666 899999985
Q ss_pred cC--CC------CC--------chhhhcC---HHHHHHHHHHHHHHHHcCCCCEEEEeccC---------CCC------C
Q psy1028 141 DA--GT------GN--------FAKAVST---RANRLAFSESILEFLIEHNLDGIDLDWEF---------PGW------P 186 (424)
Q Consensus 141 ~~--~~------~~--------~~~~~~~---~~~r~~fi~~i~~~l~~~gfDGIdiDwE~---------~~~------~ 186 (424)
+. .. .. ....++. .+..+.|++.... +++-|||||+|.--+ |.. .
T Consensus 101 G~~~~~~~~~~ps~~~~~~~~~~p~~mt~~eI~~i~~~f~~aA~~-a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~y 179 (353)
T cd02930 101 GRYAYHPLCVAPSAIRAPINPFTPRELSEEEIEQTIEDFARCAAL-AREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEW 179 (353)
T ss_pred CCCCCCCCCcCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHH-HHHcCCCEEEEecccchHHHHhcCCccCCCcCcc
Confidence 11 10 00 0011111 2345566665544 445699999997631 211 1
Q ss_pred CCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccCh-------hhhhc-cccEEEeee
Q psy1028 187 GPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDV-------PLMGR-LVDFVSIMG 245 (424)
Q Consensus 187 ~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~-------~~l~~-~vD~v~vmt 245 (424)
||+.++........++.+|++++.++.|.+-+...... ..+++. +.|.+ -+|++.|..
T Consensus 180 GGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~-~~g~~~~e~~~i~~~Le~~G~d~i~vs~ 245 (353)
T cd02930 180 GGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLV-EGGSTWEEVVALAKALEAAGADILNTGI 245 (353)
T ss_pred CCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccC-CCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 34555234555689999999999888888877753211 112222 23333 279998843
No 35
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.61 E-value=3.8 Score=40.48 Aligned_cols=101 Identities=14% Similarity=0.148 Sum_probs=63.1
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe--cCC-CC---------C------------chhhhcC---HHHHHHHHHHHHHHHHc
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT--DAG-TG---------N------------FAKAVST---RANRLAFSESILEFLIE 170 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg--~~~-~~---------~------------~~~~~~~---~~~r~~fi~~i~~~l~~ 170 (424)
..++++.+.-|++ +.|+++-+. +.. .. . ..+.++. .+..+.|++.. ..+++
T Consensus 78 ~~~~~l~d~vh~~-Ga~i~~QL~H~Gr~~~~~~~~~~~~~~~~ps~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~~a~~ 155 (361)
T cd04747 78 AGWKKVVDEVHAA-GGKIAPQLWHVGAMRKLGTPPFPDVPPLSPSGLVGPGKPVGREMTEADIDDVIAAFARAA-ADARR 155 (361)
T ss_pred HHHHHHHHHHHhc-CCEEEEeccCCCCCcCcccCccCCCceeCCCCCCcCCCCCCccCCHHHHHHHHHHHHHHH-HHHHH
Confidence 6677777776676 899999985 110 00 0 0011111 23445666544 34455
Q ss_pred CCCCEEEEeccC---------CCC------CCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 171 HNLDGIDLDWEF---------PGW------PGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 171 ~gfDGIdiDwE~---------~~~------~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
-|||||+|.--+ |.. .|++.++......+.|+.+|++.++++.|.+-+.+
T Consensus 156 aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~ 220 (361)
T cd04747 156 LGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQ 220 (361)
T ss_pred cCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECc
Confidence 699999998655 322 14555523345567999999999888889988875
No 36
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=93.47 E-value=3.1 Score=40.70 Aligned_cols=128 Identities=13% Similarity=0.176 Sum_probs=74.1
Q ss_pred CccEEEEEEEEecCCCeE-----eecCCChhhHHHHHHHHHHhCCCceEEEEEe--cC--CCCC-c--------------
Q psy1028 92 LCTHILLAFAQVSKNNTV-----AHLEPDHVKYYRDVVAMKLLNPNLKVLISVT--DA--GTGN-F-------------- 147 (424)
Q Consensus 92 ~~Thv~~~f~~~~~~g~~-----~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg--~~--~~~~-~-------------- 147 (424)
.+-.|+.....+++.|.. ...+.+.-..++++.+.-+++ |.|+++-+. +. .... +
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~-G~~~~~QL~H~G~~~~~~~~~~~~~~~~~~~~~~~ 124 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQ-GAKIGIQLAHAGRKASTAPPWEGGGPLLPPGGGGW 124 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhc-CCcEEEEccCCCcCCCCCCCccccccccccccCCC
Confidence 345555555566655432 222212235677777766666 899999985 11 1000 0
Q ss_pred -----h-----------hhhcC---HHHHHHHHHHHHHHHHcCCCCEEEEeccC---------CCC------CCCCchhh
Q psy1028 148 -----A-----------KAVST---RANRLAFSESILEFLIEHNLDGIDLDWEF---------PGW------PGPNKSHE 193 (424)
Q Consensus 148 -----~-----------~~~~~---~~~r~~fi~~i~~~l~~~gfDGIdiDwE~---------~~~------~~~~~~~~ 193 (424)
+ ..++. ....+.|++..... ++-|||||+|..-+ |.. .|+..++.
T Consensus 125 ~~~~ps~~~~~~~~~~p~~mt~~eI~~ii~~~~~aA~~a-~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr 203 (336)
T cd02932 125 QVVAPSAIPFDEGWPTPRELTREEIAEVVDAFVAAARRA-VEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENR 203 (336)
T ss_pred ceeCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHHH-HHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHH
Confidence 0 00111 23456666655544 44699999998532 211 13444424
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEecCC
Q psy1028 194 KRMFSKLLQQLKFTLSGRFLMTVAVAAP 221 (424)
Q Consensus 194 ~~~~~~~l~~Lr~~l~~~~~ls~av~~~ 221 (424)
.......++.+|++++.++.|.+.+.+.
T Consensus 204 ~rf~~eiv~aIR~~vG~d~~v~vri~~~ 231 (336)
T cd02932 204 MRFLLEVVDAVRAVWPEDKPLFVRISAT 231 (336)
T ss_pred hHHHHHHHHHHHHHcCCCceEEEEEccc
Confidence 4555689999999998888899887753
No 37
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=93.09 E-value=0.9 Score=43.81 Aligned_cols=88 Identities=13% Similarity=0.089 Sum_probs=49.9
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEec----cCCCCCC-CCchhhHHHHHHHHHHHHHHcC---CCcEEEEEecCCcc
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLDW----EFPGWPG-PNKSHEKRMFSKLLQQLKFTLS---GRFLMTVAVAAPGP 223 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiDw----E~~~~~~-~~~~~~~~~~~~~l~~Lr~~l~---~~~~ls~av~~~~~ 223 (424)
.+++.|+-+.+. ++.+.+.|||||.+|. ++....+ +.+. ..+.++.|+++|.+..| ++++| .+.-+..
T Consensus 141 ~~~~W~~il~~r-l~~l~~kGfDGvfLD~lDsy~~~~~~~~~~~~-~~~~m~~~i~~Ia~~ar~~~P~~~I--I~NnG~e 216 (315)
T TIGR01370 141 WDPEWKAIAFSY-LDRVIAQGFDGVYLDLIDAFEYWAENGDNRPG-AAAEMIAFVCEIAAYARAQNPQFVI--IPQNGEE 216 (315)
T ss_pred ccHHHHHHHHHH-HHHHHHcCCCeEeeccchhhhhhcccCCcchh-hHHHHHHHHHHHHHHHHHHCCCEEE--EecCchh
Confidence 356677766666 6677788999999984 3221111 1233 55778888888855555 44333 2222222
Q ss_pred ccccccChhhhhccccEEEeee
Q psy1028 224 IIDRAYDVPLMGRLVDFVSIMG 245 (424)
Q Consensus 224 ~~~~~~d~~~l~~~vD~v~vmt 245 (424)
... .+-..+...+|.|+.-+
T Consensus 217 il~--~~~g~~~~~idgV~~Es 236 (315)
T TIGR01370 217 LLR--DDHGGLAATVSGWAVEE 236 (315)
T ss_pred hhh--ccccchhhhceEEEecc
Confidence 221 11123566778887665
No 38
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=93.02 E-value=3.5 Score=40.67 Aligned_cols=128 Identities=13% Similarity=0.208 Sum_probs=77.0
Q ss_pred hhHHHHHHHHHHhCCCceEEEEEe--cC--CCC------Cc--------------hhhhcC---HHHHHHHHHHHHHHHH
Q psy1028 117 VKYYRDVVAMKLLNPNLKVLISVT--DA--GTG------NF--------------AKAVST---RANRLAFSESILEFLI 169 (424)
Q Consensus 117 ~~~~~~~~~lk~~n~~~kvllsvg--~~--~~~------~~--------------~~~~~~---~~~r~~fi~~i~~~l~ 169 (424)
-..++++.+.-|++ |.|+++-+. +. ... .+ ...++. .+..+.|++.... ++
T Consensus 77 i~~~~~l~~~vh~~-G~~i~~QL~h~G~~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~-a~ 154 (353)
T cd04735 77 IPGLRKLAQAIKSK-GAKAILQIFHAGRMANPALVPGGDVVSPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRR-AI 154 (353)
T ss_pred hHHHHHHHHHHHhC-CCeEEEEecCCCCCCCccccCCCceecCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHH-HH
Confidence 36788888877777 899999986 11 110 00 011111 2345667766555 45
Q ss_pred cCCCCEEEEeccC---------CCC------CCCCchhhHHHHHHHHHHHHHHcC----CCcEEEEEecCCccccccccC
Q psy1028 170 EHNLDGIDLDWEF---------PGW------PGPNKSHEKRMFSKLLQQLKFTLS----GRFLMTVAVAAPGPIIDRAYD 230 (424)
Q Consensus 170 ~~gfDGIdiDwE~---------~~~------~~~~~~~~~~~~~~~l~~Lr~~l~----~~~~ls~av~~~~~~~~~~~d 230 (424)
+-|||||+|..-+ |.. .||+.++......+.|+.+|++++ .++.|.+.+.+.... ..+.+
T Consensus 155 ~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~-~~g~~ 233 (353)
T cd04735 155 EAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPE-EPGIR 233 (353)
T ss_pred HcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccccc-CCCCC
Confidence 5799999998632 211 245556234445689999999998 788999988864321 11222
Q ss_pred ------h-hhhhc-cccEEEeeecc
Q psy1028 231 ------V-PLMGR-LVDFVSIMGYD 247 (424)
Q Consensus 231 ------~-~~l~~-~vD~v~vmtYD 247 (424)
+ +.|.+ -+|+|.|....
T Consensus 234 ~ee~~~i~~~L~~~GvD~I~Vs~g~ 258 (353)
T cd04735 234 MEDTLALVDKLADKGLDYLHISLWD 258 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEeccCc
Confidence 2 22333 37999987654
No 39
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=92.44 E-value=2.5 Score=41.93 Aligned_cols=152 Identities=10% Similarity=0.074 Sum_probs=87.7
Q ss_pred CccEEEEEEEEecCCCeEe------ecCCChhhHHHHHHHHHHhCCCceEEEEEe--cCC-CC------Cc---------
Q psy1028 92 LCTHILLAFAQVSKNNTVA------HLEPDHVKYYRDVVAMKLLNPNLKVLISVT--DAG-TG------NF--------- 147 (424)
Q Consensus 92 ~~Thv~~~f~~~~~~g~~~------~~~~~~~~~~~~~~~lk~~n~~~kvllsvg--~~~-~~------~~--------- 147 (424)
.+-.|+.....+..+|... ..++..-..++++.+.-|++ |.|+++-+. +.. .. .+
T Consensus 51 G~GLIi~e~~~V~~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~-G~~i~~QL~H~G~~~~~~~~~~~~~~ps~~~~~~ 129 (370)
T cd02929 51 GWGVVNTEQCSIHPSSDDTPRISARLWDDGDIRNLAAMTDAVHKH-GALAGIELWHGGAHAPNRESRETPLGPSQLPSEF 129 (370)
T ss_pred CceEEEEeeeEEccccccCcccCcCcCCHHHHHHHHHHHHHHHHC-CCeEEEecccCCCCCCccCCCCCccCCCCCCCCc
Confidence 4556666666676655422 22212236677787777776 899999986 110 00 00
Q ss_pred -------hhhhcC---HHHHHHHHHHHHHHHHcCCCCEEEEeccC---------CCC------CCCCchhhHHHHHHHHH
Q psy1028 148 -------AKAVST---RANRLAFSESILEFLIEHNLDGIDLDWEF---------PGW------PGPNKSHEKRMFSKLLQ 202 (424)
Q Consensus 148 -------~~~~~~---~~~r~~fi~~i~~~l~~~gfDGIdiDwE~---------~~~------~~~~~~~~~~~~~~~l~ 202 (424)
...++. .+..+.|++... .+++-|||||+|.--+ |.. .|++.++........|+
T Consensus 130 ~~~~~~~p~~mt~~eI~~ii~~f~~AA~-ra~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~ 208 (370)
T cd02929 130 PTGGPVQAREMDKDDIKRVRRWYVDAAL-RARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLE 208 (370)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHHHH-HHHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHH
Confidence 011111 134566776554 4455799999998765 221 14555523455668999
Q ss_pred HHHHHcCCCcEEEEEecCCcccccc-ccC-------hhhhhccccEEEeee
Q psy1028 203 QLKFTLSGRFLMTVAVAAPGPIIDR-AYD-------VPLMGRLVDFVSIMG 245 (424)
Q Consensus 203 ~Lr~~l~~~~~ls~av~~~~~~~~~-~~d-------~~~l~~~vD~v~vmt 245 (424)
.+|++++.++.|.+-+.+....... ..+ .+.|.+.+|++.+-.
T Consensus 209 aIr~~vg~~~~v~vRls~~~~~~~~g~~~~~e~~~~~~~l~~~~D~i~vs~ 259 (370)
T cd02929 209 DTKDAVGDDCAVATRFSVDELIGPGGIESEGEGVEFVEMLDELPDLWDVNV 259 (370)
T ss_pred HHHHHcCCCceEEEEecHHHhcCCCCCCCHHHHHHHHHHHHhhCCEEEecC
Confidence 9999998888888888764321110 011 133455578887753
No 40
>PRK14581 hmsF outer membrane N-deacetylase; Provisional
Probab=91.64 E-value=2.3 Score=45.32 Aligned_cols=195 Identities=13% Similarity=0.094 Sum_probs=110.6
Q ss_pred CCccEEEE-EEEEecCCCeE---eecCC---ChhhHHHHH-HHHHHhCCCceEEEEEe--cCC-CCC-------------
Q psy1028 91 NLCTHILL-AFAQVSKNNTV---AHLEP---DHVKYYRDV-VAMKLLNPNLKVLISVT--DAG-TGN------------- 146 (424)
Q Consensus 91 ~~~Thv~~-~f~~~~~~g~~---~~~~~---~~~~~~~~~-~~lk~~n~~~kvllsvg--~~~-~~~------------- 146 (424)
-.++||.+ +|+..++||.. .|.+- -....+.++ -+|+.+. ++||+.-.. .+. ...
T Consensus 346 ~~~~~VyLqafadp~gdg~~~~lYFpnr~lPmraDlfnrvawql~tR~-~v~vyAWmpvl~~~l~~~~~~~~~~~~~~~~ 424 (672)
T PRK14581 346 LRVTHVFLQAFSDPKGDGNIRQVYFPNRWIPMRQDLFNRVVWQLASRP-DVEVYAWMPVLAFDMDPSLPRITRIDPKTGK 424 (672)
T ss_pred cCCCEEEEEeeeCCCCCCceeeEEecCCcccHHHhhhhHHHHHHHhhh-CceEEEeeehhhccCCcccchhhhcccccCc
Confidence 46788877 77777778754 44432 112455555 5677776 899976655 221 110
Q ss_pred -------chhhh-cCHHHHHHHHHHHHHHHHcC-CCCEEEE-------eccCCCCC--------C---------CCch--
Q psy1028 147 -------FAKAV-STRANRLAFSESILEFLIEH-NLDGIDL-------DWEFPGWP--------G---------PNKS-- 191 (424)
Q Consensus 147 -------~~~~~-~~~~~r~~fi~~i~~~l~~~-gfDGIdi-------DwE~~~~~--------~---------~~~~-- 191 (424)
+.++- =+++. ++.|.+|.+=|..| .||||=+ |+|..... | .+++
T Consensus 425 ~~~~~~~y~rlspf~~~~-~~~i~~iy~DLa~~~~~~GilfhDd~~l~d~ed~sp~a~~~y~~~gl~~~~~~~~~~~~~~ 503 (672)
T PRK14581 425 TSIDPDQYRRLSPFNPEV-RQRIIDIYRDMAYSAPIDGIIYHDDAVMSDFEDASPDAIRAYEKAGFPGSITTIRQDPEMM 503 (672)
T ss_pred cccCCCCccccCCCCHHH-HHHHHHHHHHHHhcCCCCeEEeccccccccccccCHHHHHHHHhcCCCccHHhHhcCHHHH
Confidence 00110 02333 36688999989988 7999988 44433200 1 0111
Q ss_pred -----hhHHHHHHHHHHHHHHcC--C--CcEEEEEecC------CccccccccChhhhhccccEEEeeecccCCCccCCC
Q psy1028 192 -----HEKRMFSKLLQQLKFTLS--G--RFLMTVAVAA------PGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLP 256 (424)
Q Consensus 192 -----~~~~~~~~~l~~Lr~~l~--~--~~~ls~av~~------~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~ 256 (424)
.-...+..|..+|++.++ + .+...-.+.+ ....|- ..++..+.+..||+.+|+|-+... ..
T Consensus 504 ~~w~~~k~~~l~~f~~~l~~~v~~~~~p~~~tarniya~~~l~p~~~~w~-aQ~l~~~~~~yD~~a~mamp~me~---~~ 579 (672)
T PRK14581 504 QRWTRYKSKYLIDFTNELTREVRDIRGPQVKSARNIFAMPILEPESEAWF-AQNLDDFLANYDWVAPMAMPLMEK---VP 579 (672)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCccceehhcccccccCChhHHHHH-HhHHHHHHhhcchhHHhhchhhhc---cc
Confidence 012445688888888886 2 2222222222 112221 347888899999999999975544 11
Q ss_pred CCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCCCceEeecccceeeee
Q psy1028 257 VLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYT 308 (424)
Q Consensus 257 ~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~YG~~~~ 308 (424)
.. .+ .-|....++.+.+.-...+|+|+-|-. ++|.
T Consensus 580 ~~--~~-------------~~w~~~l~~~v~~~~~~~~k~vfelQ~--~dw~ 614 (672)
T PRK14581 580 LS--ES-------------NEWLAELVNKVAQRPGALEKTVFELQS--KDWT 614 (672)
T ss_pred cc--cH-------------HHHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 11 00 117777777776543467899988753 4554
No 41
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=91.17 E-value=1 Score=37.65 Aligned_cols=62 Identities=19% Similarity=0.161 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-cC-----------------CC---------CCchhhhcCHHHHHHHHHHHHHHHHc
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-DA-----------------GT---------GNFAKAVSTRANRLAFSESILEFLIE 170 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~~-----------------~~---------~~~~~~~~~~~~r~~fi~~i~~~l~~ 170 (424)
..+++++++.+++ |+||++-+. .. +. ..+...--+..-++-++..|.+++++
T Consensus 44 Dllge~v~a~h~~-Girv~ay~~~~~d~~~~~~HPeW~~~~~~G~~~~~~~~~~~~~~~~c~ns~Y~e~~~~~i~Ei~~~ 122 (132)
T PF14871_consen 44 DLLGEQVEACHER-GIRVPAYFDFSWDEDAAERHPEWFVRDADGRPMRGERFGYPGWYTCCLNSPYREFLLEQIREILDR 122 (132)
T ss_pred CHHHHHHHHHHHC-CCEEEEEEeeecChHHHHhCCceeeECCCCCCcCCCCcCCCCceecCCCccHHHHHHHHHHHHHHc
Confidence 4566777777666 999987766 11 11 11334445567788888999999999
Q ss_pred CCCCEEEEec
Q psy1028 171 HNLDGIDLDW 180 (424)
Q Consensus 171 ~gfDGIdiDw 180 (424)
|.+|||-+||
T Consensus 123 y~~DGiF~D~ 132 (132)
T PF14871_consen 123 YDVDGIFFDI 132 (132)
T ss_pred CCCCEEEecC
Confidence 9999999996
No 42
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=90.66 E-value=12 Score=37.09 Aligned_cols=148 Identities=10% Similarity=0.121 Sum_probs=81.0
Q ss_pred cEEEEEEEEecCCCeEe-----ecCCChhhHHHHHHHHHHhCCCceEEEEEe--cCC--CC-------Cc--hhh-----
Q psy1028 94 THILLAFAQVSKNNTVA-----HLEPDHVKYYRDVVAMKLLNPNLKVLISVT--DAG--TG-------NF--AKA----- 150 (424)
Q Consensus 94 Thv~~~f~~~~~~g~~~-----~~~~~~~~~~~~~~~lk~~n~~~kvllsvg--~~~--~~-------~~--~~~----- 150 (424)
-.|+-....++++|... ..+.+.-..++++.+..|++ |.|+++-+. +.. .. .+ +.+
T Consensus 50 GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~vH~~-Ga~i~~QL~H~Gr~~~~~~~~~~~~~~apS~~~~~~~ 128 (362)
T PRK10605 50 GLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAE-GGHIAVQLWHTGRISHASLQPGGQAPVAPSAINAGTR 128 (362)
T ss_pred CEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHHHHhC-CCEEEEeccCCCCCCCcccCCCCCCeECCCCcCcCcc
Confidence 44555555666554322 11212226677787777776 999999986 111 00 00 000
Q ss_pred -------------------hcC----HHHHHHHHHHHHHHHHcCCCCEEEEeccC---------CC------CCCCCchh
Q psy1028 151 -------------------VST----RANRLAFSESILEFLIEHNLDGIDLDWEF---------PG------WPGPNKSH 192 (424)
Q Consensus 151 -------------------~~~----~~~r~~fi~~i~~~l~~~gfDGIdiDwE~---------~~------~~~~~~~~ 192 (424)
.-+ .+..+.|++.. ..+++-|||||+|.--+ |. ..||+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslE- 206 (362)
T PRK10605 129 TSLRDENGQAIRVETSTPRALELEEIPGIVNDFRQAI-ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVE- 206 (362)
T ss_pred cccccccccccccCCCCCccCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHH-
Confidence 001 23445666644 44555799999997443 11 1245666
Q ss_pred hHHH-HHHHHHHHHHHcCCCcEEEEEecCCcc--ccccccCh--------hhhhcc-ccEEEeee
Q psy1028 193 EKRM-FSKLLQQLKFTLSGRFLMTVAVAAPGP--IIDRAYDV--------PLMGRL-VDFVSIMG 245 (424)
Q Consensus 193 ~~~~-~~~~l~~Lr~~l~~~~~ls~av~~~~~--~~~~~~d~--------~~l~~~-vD~v~vmt 245 (424)
++.. ....|+.+|++++.++ |.+-+.+... ....+++. +.|.+. +|+|+|..
T Consensus 207 NR~Rf~~Eiv~aVr~~vg~~~-igvRis~~~~~~~~~~G~~~~e~~~~~~~~L~~~giD~i~vs~ 270 (362)
T PRK10605 207 NRARLVLEVVDAGIAEWGADR-IGIRISPLGTFNNVDNGPNEEADALYLIEQLGKRGIAYLHMSE 270 (362)
T ss_pred HHHHHHHHHHHHHHHHcCCCe-EEEEECCccccccCCCCCCHHHHHHHHHHHHHHcCCCEEEecc
Confidence 5444 4578899999998664 7777766421 11122332 233332 79998875
No 43
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.36 E-value=1.6 Score=42.78 Aligned_cols=126 Identities=13% Similarity=0.220 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe--cCC-CC-----Cc-----------------hhhhcC---HHHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT--DAG-TG-----NF-----------------AKAVST---RANRLAFSESILEFLI 169 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg--~~~-~~-----~~-----------------~~~~~~---~~~r~~fi~~i~~~l~ 169 (424)
..++++.+..|++ |.|+++-+. +.. .. .+ ...++. ....+.|++... .++
T Consensus 82 ~~~~~l~~~vh~~-G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~-ra~ 159 (338)
T cd04733 82 EAFREWAAAAKAN-GALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAAR-LAQ 159 (338)
T ss_pred HHHHHHHHHHHhc-CCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHHH-HHH
Confidence 6677777766666 899999877 111 00 00 001111 124556666554 567
Q ss_pred cCCCCEEEEeccC---------CCC------CCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccC----
Q psy1028 170 EHNLDGIDLDWEF---------PGW------PGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYD---- 230 (424)
Q Consensus 170 ~~gfDGIdiDwE~---------~~~------~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d---- 230 (424)
+.|||||+|.--+ |.. .||+.++........|+++|++++.++.|.+.+.+... ...+++
T Consensus 160 ~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~-~~~g~~~eea 238 (338)
T cd04733 160 EAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADF-QRGGFTEEDA 238 (338)
T ss_pred HcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHc-CCCCCCHHHH
Confidence 7899999998654 332 24555623344568999999999888899988875211 111222
Q ss_pred ---hhhhhcc-ccEEEeeec
Q psy1028 231 ---VPLMGRL-VDFVSIMGY 246 (424)
Q Consensus 231 ---~~~l~~~-vD~v~vmtY 246 (424)
.+.|.+. +|+|.|..-
T Consensus 239 ~~ia~~Le~~Gvd~iev~~g 258 (338)
T cd04733 239 LEVVEALEEAGVDLVELSGG 258 (338)
T ss_pred HHHHHHHHHcCCCEEEecCC
Confidence 2233333 788887653
No 44
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=90.30 E-value=3 Score=40.50 Aligned_cols=152 Identities=12% Similarity=0.141 Sum_probs=83.2
Q ss_pred ccEEEEEEEEecCCCeEe-----ecCCChhhHHHHHHHHHHhCCCceEEEEEe--cCC-CC------C------------
Q psy1028 93 CTHILLAFAQVSKNNTVA-----HLEPDHVKYYRDVVAMKLLNPNLKVLISVT--DAG-TG------N------------ 146 (424)
Q Consensus 93 ~Thv~~~f~~~~~~g~~~-----~~~~~~~~~~~~~~~lk~~n~~~kvllsvg--~~~-~~------~------------ 146 (424)
.-.|+.....+++.|... ..+.+.-..++++.+.-|++ +.|+++-+. +.. .. .
T Consensus 47 ~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~-g~~~~~Ql~h~G~~~~~~~~~~~~~~~s~~~~~~~~ 125 (327)
T cd02803 47 VGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAH-GAKIFAQLAHAGRQAQPNLTGGPPPAPSAIPSPGGG 125 (327)
T ss_pred CcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhC-CCHhhHHhhCCCcCCCCcCCCCCccCCCCCCCCCCC
Confidence 445566666666655432 22212236777777766666 888887776 111 00 0
Q ss_pred -chhhhcC---HHHHHHHHHHHHHHHHcCCCCEEEEeccC---------CC------CCCCCchhhHHHHHHHHHHHHHH
Q psy1028 147 -FAKAVST---RANRLAFSESILEFLIEHNLDGIDLDWEF---------PG------WPGPNKSHEKRMFSKLLQQLKFT 207 (424)
Q Consensus 147 -~~~~~~~---~~~r~~fi~~i~~~l~~~gfDGIdiDwE~---------~~------~~~~~~~~~~~~~~~~l~~Lr~~ 207 (424)
....++. .+..+.|++..... ++-|||||+|..-+ |. ..|++.++......+.++++|++
T Consensus 126 ~~~~~mt~~ei~~~i~~~~~aA~~a-~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~ 204 (327)
T cd02803 126 EPPREMTKEEIEQIIEDFAAAARRA-KEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREA 204 (327)
T ss_pred CCCCcCCHHHHHHHHHHHHHHHHHH-HHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHH
Confidence 0011111 13344555544333 44799999998642 11 11344441334456889999999
Q ss_pred cCCCcEEEEEecCCccccccccC-------hhhhhcc-ccEEEeeecc
Q psy1028 208 LSGRFLMTVAVAAPGPIIDRAYD-------VPLMGRL-VDFVSIMGYD 247 (424)
Q Consensus 208 l~~~~~ls~av~~~~~~~~~~~d-------~~~l~~~-vD~v~vmtYD 247 (424)
++.++.|.+-+.+..... ..++ .+.+.+. +|+|.|..-.
T Consensus 205 ~g~d~~i~vris~~~~~~-~g~~~~e~~~la~~l~~~G~d~i~vs~g~ 251 (327)
T cd02803 205 VGPDFPVGVRLSADDFVP-GGLTLEEAIEIAKALEEAGVDALHVSGGS 251 (327)
T ss_pred cCCCceEEEEechhccCC-CCCCHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 988888888887643211 1122 2233333 7999887654
No 45
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=90.20 E-value=5.4 Score=39.06 Aligned_cols=123 Identities=13% Similarity=0.180 Sum_probs=69.3
Q ss_pred EEEEEEEecCCCeEe-----ecCCChhhHHHHHHHHHHhCCCceEEEEEe--cCC-CCC--------c--h---------
Q psy1028 96 ILLAFAQVSKNNTVA-----HLEPDHVKYYRDVVAMKLLNPNLKVLISVT--DAG-TGN--------F--A--------- 148 (424)
Q Consensus 96 v~~~f~~~~~~g~~~-----~~~~~~~~~~~~~~~lk~~n~~~kvllsvg--~~~-~~~--------~--~--------- 148 (424)
|+.....+++.|... ..+.+.-..++++.+.-+++ +.|+++-+. +.. ... + +
T Consensus 50 Ii~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~vh~~-ga~~~~QL~H~G~~~~~~~~~~~~~~~~ps~~~~~~~~~ 128 (338)
T cd02933 50 IITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAVHAK-GGKIFLQLWHVGRVSHPSLLPGGAPPVAPSAIAAEGKVF 128 (338)
T ss_pred EEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHHHhc-CCeEEEEcccCccCCCcccccCCCCccCCCCCCCCcccc
Confidence 455555666555322 21212225677777766666 899999987 111 000 0 0
Q ss_pred -----------hhhcC---HHHHHHHHHHHHHHHHcCCCCEEEEeccC---------CCC------CCCCchhhHHHHHH
Q psy1028 149 -----------KAVST---RANRLAFSESILEFLIEHNLDGIDLDWEF---------PGW------PGPNKSHEKRMFSK 199 (424)
Q Consensus 149 -----------~~~~~---~~~r~~fi~~i~~~l~~~gfDGIdiDwE~---------~~~------~~~~~~~~~~~~~~ 199 (424)
..+.. .+..+.|++.. ..+++-|||||+|..-+ |.. .||+.++.......
T Consensus 129 ~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~e 207 (338)
T cd02933 129 TPAGKVPYPTPRALTTEEIPGIVADFRQAA-RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLE 207 (338)
T ss_pred cccccCCCCCCCCCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHH
Confidence 01111 13345566544 44555699999998765 321 13455523345567
Q ss_pred HHHHHHHHcCCCcEEEEEecCC
Q psy1028 200 LLQQLKFTLSGRFLMTVAVAAP 221 (424)
Q Consensus 200 ~l~~Lr~~l~~~~~ls~av~~~ 221 (424)
.|+.+|++++.+ .|++-+...
T Consensus 208 ii~air~~vg~d-~v~vRis~~ 228 (338)
T cd02933 208 VVDAVAEAIGAD-RVGIRLSPF 228 (338)
T ss_pred HHHHHHHHhCCC-ceEEEECcc
Confidence 899999999755 378777654
No 46
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=89.89 E-value=1.1 Score=42.12 Aligned_cols=97 Identities=20% Similarity=0.231 Sum_probs=67.8
Q ss_pred HHHHHHHHHcCCCCEEEEec-cCCCCCCC-----------CchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCc-cc---
Q psy1028 161 SESILEFLIEHNLDGIDLDW-EFPGWPGP-----------NKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPG-PI--- 224 (424)
Q Consensus 161 i~~i~~~l~~~gfDGIdiDw-E~~~~~~~-----------~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~-~~--- 224 (424)
--+|.+-..+.|||-|.+|+ .+|...++ .-+ -.+.+.+||.--|++|. .-||+.+-... +.
T Consensus 198 NvtIAKEa~~fGfdEiQFDYIRFP~dg~~l~~A~~~~n~~~m~-~~~Al~sfL~yArE~l~--vpIS~DIYG~nGw~~t~ 274 (400)
T COG1306 198 NVTIAKEAAKFGFDEIQFDYIRFPADGGGLDKALNYRNTDNMT-KSEALQSFLHYAREELE--VPISADIYGQNGWSSTD 274 (400)
T ss_pred hHHHHHHHHHcCccceeeeEEEccCCCCchhhhhcccccccCC-hHHHHHHHHHHHHHhcc--cceEEEeecccCccCCc
Confidence 34678888999999999997 56655432 112 34678889999999985 45666665432 21
Q ss_pred cccccChhhhhccccEEEeeecccCCCccCCCCCCCCCC
Q psy1028 225 IDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAP 263 (424)
Q Consensus 225 ~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~ap 263 (424)
..-+.+++.|+++||.|.-|.|--|.+ ....+...|
T Consensus 275 ~~~GQ~~e~ls~yVDvIsPMfYPSHy~---~~fl~~~~p 310 (400)
T COG1306 275 MALGQFWEALSSYVDVISPMFYPSHYG---KGFLGLAVP 310 (400)
T ss_pred chhhhhHHHHHhhhhhccccccccccc---ccccccccc
Confidence 113568999999999999999977766 555544433
No 47
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=88.75 E-value=3.8 Score=39.05 Aligned_cols=111 Identities=13% Similarity=0.197 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCC--chhhH
Q psy1028 117 VKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPN--KSHEK 194 (424)
Q Consensus 117 ~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~--~~~~~ 194 (424)
+...+.+...++..++..++++|+... + +.++ .+++.+.++|+|+|+|++--|....+. .. +.
T Consensus 83 ~~~~~~i~~~~~~~~~~pvi~si~g~~----------~---~~~~-~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~-~~ 147 (289)
T cd02810 83 DVWLQDIAKAKKEFPGQPLIASVGGSS----------K---EDYV-ELARKIERAGAKALELNLSCPNVGGGRQLGQ-DP 147 (289)
T ss_pred HHHHHHHHHHHhccCCCeEEEEeccCC----------H---HHHH-HHHHHHHHhCCCEEEEEcCCCCCCCCccccc-CH
Confidence 345556666555424788999997331 1 1233 345556667999999999776542211 22 45
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEecCCccccccccCh-hhhhc-cccEEEeee
Q psy1028 195 RMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDV-PLMGR-LVDFVSIMG 245 (424)
Q Consensus 195 ~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~-~~l~~-~vD~v~vmt 245 (424)
+...++++++|+.+ ++-|++-+...... +....+ +.+.+ -+|++.+..
T Consensus 148 ~~~~eiv~~vr~~~--~~pv~vKl~~~~~~-~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 148 EAVANLLKAVKAAV--DIPLLVKLSPYFDL-EDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred HHHHHHHHHHHHcc--CCCEEEEeCCCCCH-HHHHHHHHHHHHcCCCEEEEEc
Confidence 67778899999877 45566665543220 011112 22222 379998863
No 48
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=88.74 E-value=13 Score=36.85 Aligned_cols=129 Identities=10% Similarity=0.170 Sum_probs=77.3
Q ss_pred hhHHHHHHHHHHhCCCceEEEEEe--c---CCCCC-------------------chhhhcC---HHHHHHHHHHHHHHHH
Q psy1028 117 VKYYRDVVAMKLLNPNLKVLISVT--D---AGTGN-------------------FAKAVST---RANRLAFSESILEFLI 169 (424)
Q Consensus 117 ~~~~~~~~~lk~~n~~~kvllsvg--~---~~~~~-------------------~~~~~~~---~~~r~~fi~~i~~~l~ 169 (424)
-..++++.+.-|++ |.|+++-|. + ..+.. ..+.++. .+.++.|++....-.+
T Consensus 82 i~~~~~vt~avH~~-G~~i~iQL~H~Gr~~~~~~~~~~~~vapS~~~~~~~~~~~pr~mt~~eI~~ii~~f~~AA~rA~~ 160 (363)
T COG1902 82 IPGLKRLTEAVHAH-GAKIFIQLWHAGRKARASHPWLPSAVAPSAIPAPGGRRATPRELTEEEIEEVIEDFARAARRAKE 160 (363)
T ss_pred hHHHHHHHHHHHhc-CCeEEEEeccCcccccccccCCCcccCCCccccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHH
Confidence 36777777766666 889999998 2 11110 1111222 1344555555554444
Q ss_pred cCCCCEEEEeccC---------CCC------CCCCchhhHHHH-HHHHHHHHHHcCCCcEEEEEecCCccccccccChh-
Q psy1028 170 EHNLDGIDLDWEF---------PGW------PGPNKSHEKRMF-SKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVP- 232 (424)
Q Consensus 170 ~~gfDGIdiDwE~---------~~~------~~~~~~~~~~~~-~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~- 232 (424)
-|||||+|.=-+ |.. .||+.+ .+..| ...++.+|++.+.++.|.+-+.+.......+++++
T Consensus 161 -AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlE-NR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~~g~~~~e 238 (363)
T COG1902 161 -AGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLE-NRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDGGGLTIEE 238 (363)
T ss_pred -cCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHH-HHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCCHHH
Confidence 799999996432 111 245666 55544 57889999999998889999888655122233322
Q ss_pred ------hhhcc--ccEEEeeeccc
Q psy1028 233 ------LMGRL--VDFVSIMGYDY 248 (424)
Q Consensus 233 ------~l~~~--vD~v~vmtYD~ 248 (424)
.|.+. +|++.+..-+.
T Consensus 239 ~~~la~~L~~~G~~d~i~vs~~~~ 262 (363)
T COG1902 239 AVELAKALEEAGLVDYIHVSEGGY 262 (363)
T ss_pred HHHHHHHHHhcCCccEEEeecccc
Confidence 23332 68888886544
No 49
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=88.52 E-value=13 Score=36.34 Aligned_cols=161 Identities=13% Similarity=0.138 Sum_probs=85.7
Q ss_pred cEEEEEEeCCCCCCCCCCCCCCCCCccEEEEEEEEecCCCe-----EeecCCChhhHHHHHHHHHHhCCCceEEEEEe--
Q psy1028 68 YQLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNT-----VAHLEPDHVKYYRDVVAMKLLNPNLKVLISVT-- 140 (424)
Q Consensus 68 ~~vvgY~~~~~~~~~~~~~~i~~~~~Thv~~~f~~~~~~g~-----~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg-- 140 (424)
...+.||..|.. ..+-.|+.....++++|. +...+.+.-..++++.+.-+++ |.|+++.+.
T Consensus 37 ~~~~~~y~~rA~-----------gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~-G~~i~~QL~H~ 104 (337)
T PRK13523 37 NFHLIHYGTRAA-----------GQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDH-GAKAAIQLAHA 104 (337)
T ss_pred HHHHHHHHHHHc-----------CCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhc-CCEEEEEccCC
Confidence 345667776421 224444444445554433 2222222336677777766666 999999986
Q ss_pred cCCCC----------C-------chhhhcC---HHHHHHHHHHHHHHHHcCCCCEEEEeccC---------CCC------
Q psy1028 141 DAGTG----------N-------FAKAVST---RANRLAFSESILEFLIEHNLDGIDLDWEF---------PGW------ 185 (424)
Q Consensus 141 ~~~~~----------~-------~~~~~~~---~~~r~~fi~~i~~~l~~~gfDGIdiDwE~---------~~~------ 185 (424)
+.... . ....++. .+..+.|++.. ..+++-|||||+|.--+ |..
T Consensus 105 G~~~~~~~~~~~ps~~~~~~~~~~p~~mt~eeI~~ii~~f~~aA-~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~ 183 (337)
T PRK13523 105 GRKAELEGDIVAPSAIPFDEKSKTPVEMTKEQIKETVLAFKQAA-VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDE 183 (337)
T ss_pred CCCCCCCCCccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHH-HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCC
Confidence 11110 0 0011111 14456666655 44455799999998653 322
Q ss_pred CCCCchhhHHH-HHHHHHHHHHHcCCCcEEEEEecCCccccccccCh-------hhhhcc-ccEEEeee
Q psy1028 186 PGPNKSHEKRM-FSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDV-------PLMGRL-VDFVSIMG 245 (424)
Q Consensus 186 ~~~~~~~~~~~-~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~-------~~l~~~-vD~v~vmt 245 (424)
.||+.+ .+.. ....|+.+|++. ++.|++-+.+... ...+.+. +.|.+. +|+|.|..
T Consensus 184 yGGsle-nR~Rf~~eii~~ir~~~--~~~v~vRis~~d~-~~~G~~~~e~~~i~~~l~~~gvD~i~vs~ 248 (337)
T PRK13523 184 YGGSPE-NRYRFLREIIDAVKEVW--DGPLFVRISASDY-HPGGLTVQDYVQYAKWMKEQGVDLIDVSS 248 (337)
T ss_pred CCCCHH-HHHHHHHHHHHHHHHhc--CCCeEEEeccccc-CCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 145555 4444 457888899987 4556666665321 1112222 223222 79998864
No 50
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=87.90 E-value=16 Score=35.86 Aligned_cols=128 Identities=10% Similarity=0.145 Sum_probs=76.1
Q ss_pred ccEEEEEEEEecCCCe-----EeecCCChhhHHHHHHHHHHhCCCceEEEEEe--c--CCCC--Cc-----h--------
Q psy1028 93 CTHILLAFAQVSKNNT-----VAHLEPDHVKYYRDVVAMKLLNPNLKVLISVT--D--AGTG--NF-----A-------- 148 (424)
Q Consensus 93 ~Thv~~~f~~~~~~g~-----~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg--~--~~~~--~~-----~-------- 148 (424)
+-.|+.....+++.|. +...+...-..++++.+.-|++ |.|+++-|. + .... .. +
T Consensus 50 ~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~-Ga~i~~QL~H~G~~~~~~~~~~~~~~psa~~~~~~~ 128 (341)
T PF00724_consen 50 AGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAH-GAKIIAQLWHAGRQANPEYSGDPPVGPSAPSALPSP 128 (341)
T ss_dssp TSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHT-TSEEEEEEE--GGGSSGCCSGGGCEESSCSSSSSTT
T ss_pred CceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhc-CccceeeccccccccCcccCCCCccCcccccccCcc
Confidence 4556667767776544 2222212225677777776776 999999988 1 1100 00 0
Q ss_pred --------hhhcC---HHHHHHHHHHHHHHHHcCCCCEEEEeccC---------CCC------CCCCchhhHHHH-HHHH
Q psy1028 149 --------KAVST---RANRLAFSESILEFLIEHNLDGIDLDWEF---------PGW------PGPNKSHEKRMF-SKLL 201 (424)
Q Consensus 149 --------~~~~~---~~~r~~fi~~i~~~l~~~gfDGIdiDwE~---------~~~------~~~~~~~~~~~~-~~~l 201 (424)
..++. .+..+.|++......+ -|||||+|.--+ |.. .||+.+ ++..| ...|
T Consensus 129 ~~~~~~~~~~mt~~eI~~ii~~f~~AA~~A~~-AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~E-NR~Rf~~Eii 206 (341)
T PF00724_consen 129 IKFMGYPPREMTEEEIEEIIEDFAQAARRAKE-AGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLE-NRARFLLEII 206 (341)
T ss_dssp TTETSCEEEE--HHHHHHHHHHHHHHHHHHHH-TT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHH-HHHHHHHHHH
T ss_pred cccCCCCCeeCCHHHHHHHHHHHHHHHHHHHH-hccCeEeecccchhhhhheeeeccCCCchhhhhhhc-hhhHHHHHHH
Confidence 00111 2334455555544444 699999997643 111 245666 55444 5799
Q ss_pred HHHHHHcCCCcEEEEEecCCcc
Q psy1028 202 QQLKFTLSGRFLMTVAVAAPGP 223 (424)
Q Consensus 202 ~~Lr~~l~~~~~ls~av~~~~~ 223 (424)
+++|++++.++.|.+-+.+...
T Consensus 207 ~aIr~~vg~d~~v~~Rls~~~~ 228 (341)
T PF00724_consen 207 EAIREAVGPDFPVGVRLSPDDF 228 (341)
T ss_dssp HHHHHHHTGGGEEEEEEETTCS
T ss_pred HHHHHHhcCCceEEEEEeeecc
Confidence 9999999999999999988643
No 51
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=86.43 E-value=2.1 Score=44.57 Aligned_cols=63 Identities=13% Similarity=0.155 Sum_probs=42.7
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEeccCC-C----CCCCCc-hhhHHHHHHHHHHHHHHcCCCcEEEE
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLDWEFP-G----WPGPNK-SHEKRMFSKLLQQLKFTLSGRFLMTV 216 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~-~----~~~~~~-~~~~~~~~~~l~~Lr~~l~~~~~ls~ 216 (424)
.++..|+-+++++.+.++..||||+.||==.. + ..|... . -...|..||++++++++ ++.|.+
T Consensus 238 ~N~~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~-l~~~y~~Fi~~~K~~~~-~k~lv~ 306 (559)
T PF13199_consen 238 GNPEWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYD-LSDGYASFINAMKEALP-DKYLVF 306 (559)
T ss_dssp T-HHHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGE-CHHHHHHHHHHHHHHST-TSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchh-hHHHHHHHHHHHHHhCC-CCceee
Confidence 56788999999999999999999999983211 0 111223 3 47899999999999994 444444
No 52
>COG4724 Endo-beta-N-acetylglucosaminidase D [Carbohydrate transport and metabolism]
Probab=86.41 E-value=2 Score=41.95 Aligned_cols=82 Identities=13% Similarity=0.106 Sum_probs=61.3
Q ss_pred HHHHHHhCCCceEEEEEe------cCCCCCchhhh-cCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHH
Q psy1028 123 VVAMKLLNPNLKVLISVT------DAGTGNFAKAV-STRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKR 195 (424)
Q Consensus 123 ~~~lk~~n~~~kvllsvg------~~~~~~~~~~~-~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~ 195 (424)
++...|+| |+.|+=.|= +...+-+..|+ ++++-.--|+..+++..+-|||||--|+-|-.+. .++ +.+
T Consensus 132 VIDaaHrN-GVPvlGt~Ffppk~ygg~~ewv~~mLk~dedGsfP~A~klv~vAkyYGfdGwFINqET~G~---~~~-~a~ 206 (553)
T COG4724 132 VIDAAHRN-GVPVLGTLFFPPKNYGGDQEWVAEMLKQDEDGSFPIARKLVDVAKYYGFDGWFINQETTGD---VKP-LAE 206 (553)
T ss_pred hhhhhhcC-CCceeeeeecChhhcCchHHHHHHHHhcCcCCCChhHHHHHHHHHhcCcceeEecccccCC---Ccc-hHH
Confidence 77788888 999887665 12223344444 4445555789999999999999999999987655 566 888
Q ss_pred HHHHHHHHHHHHcC
Q psy1028 196 MFSKLLQQLKFTLS 209 (424)
Q Consensus 196 ~~~~~l~~Lr~~l~ 209 (424)
++.+||..+++.-.
T Consensus 207 ~M~~f~ly~ke~~~ 220 (553)
T COG4724 207 KMRQFMLYSKEYAA 220 (553)
T ss_pred HHHHHHHHHHhccc
Confidence 99999999886654
No 53
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=86.08 E-value=1.8 Score=46.12 Aligned_cols=93 Identities=12% Similarity=-0.002 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHcC--CC-cEEEE-EecCC------ccccccccChhhhhccccEEEeeecccCCCccCCCCCCCCCCC
Q psy1028 195 RMFSKLLQQLKFTLS--GR-FLMTV-AVAAP------GPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPL 264 (424)
Q Consensus 195 ~~~~~~l~~Lr~~l~--~~-~~ls~-av~~~------~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl 264 (424)
..+..|..+|.+.++ ++ .+.|+ .+.+. ...|- ..++..+.+..||+.+|++=|... . ..+. +.
T Consensus 512 ~~l~~f~~~l~~~v~~~~~~~~~tarni~a~~~l~p~~e~w~-aQ~l~~~~~~yD~~a~mampyme~---~--~~~~-~~ 584 (671)
T PRK14582 512 RALTDFTLELSARVKAIRGPQVKTARNIFALPVIQPESEAWF-AQNLDDFLKSYDWTAPMAMPLMEG---V--AEKS-SD 584 (671)
T ss_pred HHHHHHHHHHHHHHHhhcCccceeeccccccccCChhHHHHH-HhHHHHHHhhcchhhhhcchhhhc---c--Cccc-HH
Confidence 445688888888877 22 22222 22221 12221 347888889999999999654433 1 1111 11
Q ss_pred CCCCCCCCCCccccHHHHHHHHHHcCCCCCceEeecccceeeee
Q psy1028 265 YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYT 308 (424)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~YG~~~~ 308 (424)
-|+...++.+.+.-...+|+|+-|-. ++|.
T Consensus 585 ------------~wl~~l~~~v~~~~~~~~k~vfelq~--~dw~ 614 (671)
T PRK14582 585 ------------AWLIQLVNQVKNIPGALDKTIFELQA--RDWQ 614 (671)
T ss_pred ------------HHHHHHHHHHHhcCCcccceEEEeec--cccc
Confidence 17788777777644567999988753 4554
No 54
>TIGR03849 arch_ComA phosphosulfolactate synthase. This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.
Probab=85.76 E-value=27 Score=32.25 Aligned_cols=146 Identities=16% Similarity=0.148 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMF 197 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~ 197 (424)
..+++..++.+++ +++|.+- |+ .|..+ ..+..++..++.+++.|||.|+|.=-...- ..+..
T Consensus 41 ~~l~eki~la~~~-~V~v~~G-Gt----l~E~~-----~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i-------~~~~~ 102 (237)
T TIGR03849 41 DIVKEKIEMYKDY-GIKVYPG-GT----LFEIA-----HSKGKFDEYLNECDELGFEAVEISDGSMEI-------SLEER 102 (237)
T ss_pred HHHHHHHHHHHHc-CCeEeCC-cc----HHHHH-----HHhhhHHHHHHHHHHcCCCEEEEcCCccCC-------CHHHH
Confidence 4677788888877 7766554 32 23332 234667888889999999999996443322 23455
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCCccccccccCh--------hhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCC
Q psy1028 198 SKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDV--------PLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVT 269 (424)
Q Consensus 198 ~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~--------~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~ 269 (424)
..+|+.++.. ++.+---+...........+. ..|..-+|+|.+-+=.- |-...++...+
T Consensus 103 ~rlI~~~~~~---g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEs----------g~~~Gi~~~~g 169 (237)
T TIGR03849 103 CNLIERAKDN---GFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRES----------GKNIGLFDEKG 169 (237)
T ss_pred HHHHHHHHhC---CCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhc----------CCCcceeCCCC
Confidence 5566665532 111111111100000001111 22455689998886221 11112221111
Q ss_pred CCCCCccccHHHHHHHHHHcCCCCCceEeeccc
Q psy1028 270 DQGYFKSLNANWSVNYYLYKGIPANKLLLGLPT 302 (424)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~ 302 (424)
. +-...+..+++ .++++||+.--|.
T Consensus 170 ~-------~r~d~v~~i~~-~l~~eklifEAp~ 194 (237)
T TIGR03849 170 N-------VKEDELDVLAE-NVDINKVIFEAPQ 194 (237)
T ss_pred C-------CchHHHHHHHh-hCChhcEEEECCC
Confidence 1 34667777887 4999999988763
No 55
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.67 E-value=1.9 Score=43.01 Aligned_cols=92 Identities=21% Similarity=0.211 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEec--cCCCCCCC---------------Cch-h------hHHHHHHHHHHHHHHcC
Q psy1028 154 RANRLAFSESILEFLIEHNLDGIDLDW--EFPGWPGP---------------NKS-H------EKRMFSKLLQQLKFTLS 209 (424)
Q Consensus 154 ~~~r~~fi~~i~~~l~~~gfDGIdiDw--E~~~~~~~---------------~~~-~------~~~~~~~~l~~Lr~~l~ 209 (424)
++.|+-..+-+++.+++|..|||-+|- -++...+. .+. . -+++..+|++++...++
T Consensus 181 Pevq~~i~~lv~evV~~YdvDGIQfDd~fy~~~~~gy~~~~~~~y~~et~~~~~~~~~~w~~WRr~~i~~~v~~i~~~VK 260 (418)
T COG1649 181 PEVQDFITSLVVEVVRNYDVDGIQFDDYFYYPIPFGYDPDTVTLYRYETGKGPPSNPDQWTDWRRDNITALVAQISQTVK 260 (418)
T ss_pred hHHHHHHHHHHHHHHhCCCCCceecceeecccCccccCchHHHHHHhhccCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 556666667788999999999999982 23322210 111 0 24577889999999888
Q ss_pred ---CCcEEEEEe-cCCcccccccc-----Chhhh--hccccEEEeeec
Q psy1028 210 ---GRFLMTVAV-AAPGPIIDRAY-----DVPLM--GRLVDFVSIMGY 246 (424)
Q Consensus 210 ---~~~~ls~av-~~~~~~~~~~~-----d~~~l--~~~vD~v~vmtY 246 (424)
++..++++. +.... ..-.| |...- ..++|++..|.|
T Consensus 261 avKp~v~~svsp~n~~~~-~~f~y~~~~qDw~~Wv~~G~iD~l~pqvY 307 (418)
T COG1649 261 AVKPNVKFSVSPFNPLGS-ATFAYDYFLQDWRRWVRQGLIDELAPQVY 307 (418)
T ss_pred hhCCCeEEEEccCCCCCc-cceehhhhhhhHHHHHHcccHhhhhhhhh
Confidence 888888887 42111 00012 22211 458999999999
No 56
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=84.86 E-value=5.7 Score=39.62 Aligned_cols=101 Identities=15% Similarity=0.199 Sum_probs=61.6
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-cCC----CC-----------C---------chhhhcC---HHHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-DAG----TG-----------N---------FAKAVST---RANRLAFSESILEFLI 169 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~~~----~~-----------~---------~~~~~~~---~~~r~~fi~~i~~~l~ 169 (424)
..++++.+.-+++ |.|+++-+. ..+ .. . ....++. .+.++.|++.. ..++
T Consensus 83 ~~~k~l~davh~~-G~~i~~QL~H~~Gr~~~~~~~~~~~~~~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~AA-~ra~ 160 (382)
T cd02931 83 RTAKEMTERVHAY-GTKIFLQLTAGFGRVCIPGFLGEDKPVAPSPIPNRWLPEITCRELTTEEVETFVGKFGESA-VIAK 160 (382)
T ss_pred HHHHHHHHHHHHc-CCEEEEEccCcCCCccCccccCCCCccCCCCCCCCcCCCCCCCcCCHHHHHHHHHHHHHHH-HHHH
Confidence 5677777766666 899998883 101 00 0 0000111 13455666654 3444
Q ss_pred cCCCCEEEEeccC---C--------C-----CCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 170 EHNLDGIDLDWEF---P--------G-----WPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 170 ~~gfDGIdiDwE~---~--------~-----~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
+-|||||+|.--+ + . ..|++.++......+.|+++|++.+.++.|++-+.+
T Consensus 161 ~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~ 227 (382)
T cd02931 161 EAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSV 227 (382)
T ss_pred HcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEec
Confidence 5799999999733 2 1 114555523445568999999999888889888765
No 57
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=84.26 E-value=3.5 Score=43.13 Aligned_cols=83 Identities=19% Similarity=0.217 Sum_probs=54.6
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c-CC--CCC-------chh----------hhcCH---HHHHHHHHHHHHHHHcCCC
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D-AG--TGN-------FAK----------AVSTR---ANRLAFSESILEFLIEHNL 173 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~-~~--~~~-------~~~----------~~~~~---~~r~~fi~~i~~~l~~~gf 173 (424)
..++++++..|++ |++|++=+- + .+ ... |.. -..++ ..|+-+++++.-|+++|++
T Consensus 160 ~e~k~lV~~aH~~-Gi~VilD~V~NH~~~~~~~~~~~~~y~~~~~~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~i 238 (542)
T TIGR02402 160 DDLKALVDAAHGL-GLGVILDVVYNHFGPEGNYLPRYAPYFTDRYSTPWGAAINFDGPGSDEVRRYILDNALYWLREYHF 238 (542)
T ss_pred HHHHHHHHHHHHC-CCEEEEEEccCCCCCccccccccCccccCCCCCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCC
Confidence 5677788877777 999999887 2 11 110 100 01234 7888999999999999999
Q ss_pred CEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC
Q psy1028 174 DGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS 209 (424)
Q Consensus 174 DGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~ 209 (424)
||+-||--.... +. .-..|++++++.++
T Consensus 239 DGfR~D~~~~~~-------~~-~~~~~l~~~~~~~~ 266 (542)
T TIGR02402 239 DGLRLDAVHAIA-------DT-SAKHILEELAREVH 266 (542)
T ss_pred cEEEEeCHHHhc-------cc-cHHHHHHHHHHHHH
Confidence 999999532211 11 11457777777765
No 58
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=83.94 E-value=10 Score=40.40 Aligned_cols=64 Identities=22% Similarity=0.332 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-cCC----CCCchh-------------------------hhcCHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-DAG----TGNFAK-------------------------AVSTRANRLAFSESILEF 167 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~~~----~~~~~~-------------------------~~~~~~~r~~fi~~i~~~ 167 (424)
..++++++..|++ |++|++=+- ... ...|.. -..++..|+-+++++.-|
T Consensus 229 ~efk~lV~~~H~~-Gi~VilDvV~NH~~~~~~~~f~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W 307 (605)
T TIGR02104 229 RELKQMIQALHEN-GIRVIMDVVYNHTYSREESPFEKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYW 307 (605)
T ss_pred HHHHHHHHHHHHC-CCEEEEEEEcCCccCCCCCcccCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHH
Confidence 4577777777776 999999887 211 011100 013577888999999999
Q ss_pred HHcCCCCEEEEeccC
Q psy1028 168 LIEHNLDGIDLDWEF 182 (424)
Q Consensus 168 l~~~gfDGIdiDwE~ 182 (424)
++++|+||+-||.-.
T Consensus 308 ~~e~~iDGfR~D~~~ 322 (605)
T TIGR02104 308 VKEYNIDGFRFDLMG 322 (605)
T ss_pred HHHcCCCEEEEechh
Confidence 999999999999653
No 59
>PRK12568 glycogen branching enzyme; Provisional
Probab=83.56 E-value=12 Score=40.54 Aligned_cols=61 Identities=15% Similarity=0.166 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c-CCCC-----------C-------------chh---hhcCHHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D-AGTG-----------N-------------FAK---AVSTRANRLAFSESILEFL 168 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~-~~~~-----------~-------------~~~---~~~~~~~r~~fi~~i~~~l 168 (424)
..++.+++..+++ |++|++-+- . .... . |.. -..+++.|+-+++++.-||
T Consensus 319 ~dfk~lV~~~H~~-Gi~VIlD~V~nH~~~d~~~l~~fdg~~~Ye~~d~~~g~~~~W~~~~~N~~~peVr~~li~~a~~Wl 397 (730)
T PRK12568 319 DGFAQFVDACHRA-GIGVILDWVSAHFPDDAHGLAQFDGAALYEHADPREGMHRDWNTLIYNYGRPEVTAYLLGSALEWI 397 (730)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeccccCCccccccccCCCccccccCCCcCCccCCCCCeecccCCHHHHHHHHHHHHHHH
Confidence 5677788877777 999999876 1 1100 0 100 1356788999999999999
Q ss_pred HcCCCCEEEEe
Q psy1028 169 IEHNLDGIDLD 179 (424)
Q Consensus 169 ~~~gfDGIdiD 179 (424)
+++++||+-+|
T Consensus 398 ~eyhIDG~R~D 408 (730)
T PRK12568 398 EHYHLDGLRVD 408 (730)
T ss_pred HHhCceEEEEc
Confidence 99999999999
No 60
>PRK05402 glycogen branching enzyme; Provisional
Probab=83.23 E-value=12 Score=40.76 Aligned_cols=62 Identities=16% Similarity=0.198 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c-CCCC------------------------Cch---hhhcCHHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D-AGTG------------------------NFA---KAVSTRANRLAFSESILEFL 168 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~-~~~~------------------------~~~---~~~~~~~~r~~fi~~i~~~l 168 (424)
+.++.+++..+++ |++|++=+- . .+.. .|. --..+++.|+-+++++.-||
T Consensus 315 ~dfk~lV~~~H~~-Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~n~~~~~v~~~l~~~~~~W~ 393 (726)
T PRK05402 315 DDFRYFVDACHQA-GIGVILDWVPAHFPKDAHGLARFDGTALYEHADPREGEHPDWGTLIFNYGRNEVRNFLVANALYWL 393 (726)
T ss_pred HHHHHHHHHHHHC-CCEEEEEECCCCCCCCccchhccCCCcceeccCCcCCccCCCCCccccCCCHHHHHHHHHHHHHHH
Confidence 5677788777776 999999876 1 1110 000 02346788899999999999
Q ss_pred HcCCCCEEEEec
Q psy1028 169 IEHNLDGIDLDW 180 (424)
Q Consensus 169 ~~~gfDGIdiDw 180 (424)
+++++||+-||-
T Consensus 394 ~e~~iDG~R~D~ 405 (726)
T PRK05402 394 EEFHIDGLRVDA 405 (726)
T ss_pred HHhCCcEEEECC
Confidence 999999999993
No 61
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=81.89 E-value=18 Score=38.61 Aligned_cols=62 Identities=11% Similarity=0.096 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c-CCCC--C---------c-------------hh---hhcCHHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D-AGTG--N---------F-------------AK---AVSTRANRLAFSESILEFL 168 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~-~~~~--~---------~-------------~~---~~~~~~~r~~fi~~i~~~l 168 (424)
..++++++..|++ |+|||+=+- . .+.. . + .. -..++..|+-+++++.-|+
T Consensus 206 ~dlk~lV~~~H~~-Gi~VilD~V~NH~~~~~~~~~~~~~~~~y~~~~~~~~~~~~w~~~~~~~~~~~Vr~~l~~~~~~W~ 284 (613)
T TIGR01515 206 DDFMYFVDACHQA-GIGVILDWVPGHFPKDDHGLAEFDGTPLYEHKDPRDGEHWDWGTLIFDYGRPEVRNFLVANALYWA 284 (613)
T ss_pred HHHHHHHHHHHHC-CCEEEEEecccCcCCccchhhccCCCcceeccCCccCcCCCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 5677788777776 999999876 1 1100 0 0 00 1145788999999999999
Q ss_pred HcCCCCEEEEec
Q psy1028 169 IEHNLDGIDLDW 180 (424)
Q Consensus 169 ~~~gfDGIdiDw 180 (424)
++|++||+-||-
T Consensus 285 ~ey~iDG~R~D~ 296 (613)
T TIGR01515 285 EFYHIDGLRVDA 296 (613)
T ss_pred HHhCCcEEEEcC
Confidence 999999999996
No 62
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=81.61 E-value=8.3 Score=38.59 Aligned_cols=101 Identities=15% Similarity=0.077 Sum_probs=63.0
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe----cCCCCCc----------------------hhhhcCHHHHHHHHHHHHHHHHcC
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT----DAGTGNF----------------------AKAVSTRANRLAFSESILEFLIEH 171 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg----~~~~~~~----------------------~~~~~~~~~r~~fi~~i~~~l~~~ 171 (424)
..++.+.+..++. |+|.-|-+. ..++..+ .-=+++++.++-+.+.+.++++++
T Consensus 104 ~Gl~~l~~~i~~~-Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l~~~i~~ll~~~ 182 (394)
T PF02065_consen 104 NGLKPLADYIHSL-GMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYLFEVIDRLLREW 182 (394)
T ss_dssp THHHHHHHHHHHT-T-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHC-CCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHHHHHHHHHHHhc
Confidence 5577777644444 899888774 1111111 011467888999999999999999
Q ss_pred CCCEEEEeccCCCCCCCCch------hhHHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 172 NLDGIDLDWEFPGWPGPNKS------HEKRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 172 gfDGIdiDwE~~~~~~~~~~------~~~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
|+|.|-+|+.......+.+. .....+-.++++||+++ +++++..+...
T Consensus 183 gidYiK~D~n~~~~~~~~~~~~~~~~~~~~~~y~l~~~L~~~~-P~v~iE~CssG 236 (394)
T PF02065_consen 183 GIDYIKWDFNRDITEAGSPSLPEGYHRYVLGLYRLLDRLRARF-PDVLIENCSSG 236 (394)
T ss_dssp T-SEEEEE-TS-TTS-SSTTS-GHHHHHHHHHHHHHHHHHHHT-TTSEEEE-BTT
T ss_pred CCCEEEeccccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHhC-CCcEEEeccCC
Confidence 99999999986554333222 02234456888898888 88888877654
No 63
>PLN02411 12-oxophytodienoate reductase
Probab=80.72 E-value=10 Score=38.00 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEeccC---------CCC------CCCCchhhHHHH-HHHHHHHHHHcCCCcEEEEEec
Q psy1028 156 NRLAFSESILEFLIEHNLDGIDLDWEF---------PGW------PGPNKSHEKRMF-SKLLQQLKFTLSGRFLMTVAVA 219 (424)
Q Consensus 156 ~r~~fi~~i~~~l~~~gfDGIdiDwE~---------~~~------~~~~~~~~~~~~-~~~l~~Lr~~l~~~~~ls~av~ 219 (424)
..+.|++... .+++-|||||+|.--+ |.. .||+.+ .+..| ...|+.+|++.+.++ |.+.+.
T Consensus 163 ii~~f~~AA~-rA~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlE-NR~RF~lEIi~aVr~~vg~d~-vgvRiS 239 (391)
T PLN02411 163 VVEHYRQAAL-NAIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIE-NRCRFLMQVVQAVVSAIGADR-VGVRVS 239 (391)
T ss_pred HHHHHHHHHH-HHHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHH-HHhHHHHHHHHHHHHHcCCCe-EEEEEc
Confidence 3445555443 3445799999997543 111 145666 55444 578899999998665 888887
Q ss_pred CC
Q psy1028 220 AP 221 (424)
Q Consensus 220 ~~ 221 (424)
+.
T Consensus 240 ~~ 241 (391)
T PLN02411 240 PA 241 (391)
T ss_pred cc
Confidence 63
No 64
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=79.24 E-value=13 Score=41.11 Aligned_cols=31 Identities=16% Similarity=0.199 Sum_probs=27.1
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCEEEEeccCC
Q psy1028 153 TRANRLAFSESILEFLIEHNLDGIDLDWEFP 183 (424)
Q Consensus 153 ~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~ 183 (424)
++.-|+-+++++.-|+++|++||+-||.-..
T Consensus 470 ~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~ 500 (898)
T TIGR02103 470 HRMMAKLIVDSLVVWAKDYKVDGFRFDLMGH 500 (898)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCEEEEechhh
Confidence 4677889999999999999999999997643
No 65
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=78.98 E-value=13 Score=42.30 Aligned_cols=81 Identities=14% Similarity=0.182 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-cCC--CCCchh------------------------hhcCHHHHHHHHHHHHHHHHc
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-DAG--TGNFAK------------------------AVSTRANRLAFSESILEFLIE 170 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~~~--~~~~~~------------------------~~~~~~~r~~fi~~i~~~l~~ 170 (424)
..+++|++..|++ |++|||=|- ... ...|.. -..++..|+-+++++.-|+++
T Consensus 555 ~EfK~LV~alH~~-GI~VILDVVyNHt~~~~~f~~~~p~Yy~~~~~~G~~~~~~~g~~l~~e~~~vrk~iiDsl~yWv~e 633 (1111)
T TIGR02102 555 AEFKNLINEIHKR-GMGVILDVVYNHTAKVYIFEDLEPNYYHFMDADGTPRTSFGGGRLGTTHEMSRRILVDSIKYLVDE 633 (1111)
T ss_pred HHHHHHHHHHHHC-CCEEEEecccccccccccccccCCCceEeeCCCCCcccccCCCCCCcCCHHHHHHHHHHHHHHHHh
Confidence 4577777766666 999999876 110 001100 013467788999999999999
Q ss_pred CCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHH
Q psy1028 171 HNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFT 207 (424)
Q Consensus 171 ~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~ 207 (424)
|++||.-||.-... +...+..+.+++++.
T Consensus 634 y~VDGFRfDl~g~~--------d~~~~~~~~~~l~~~ 662 (1111)
T TIGR02102 634 FKVDGFRFDMMGDH--------DAASIEIAYKEAKAI 662 (1111)
T ss_pred cCCcEEEEeccccC--------CHHHHHHHHHHHHHh
Confidence 99999999975321 444555555555543
No 66
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=78.46 E-value=17 Score=39.90 Aligned_cols=152 Identities=13% Similarity=0.150 Sum_probs=86.0
Q ss_pred CccEEEEEEEEecCCCeEeecCC-----ChhhHHHHHHHHHHhCCCceEEEEEe--cCC-CC--C------------c--
Q psy1028 92 LCTHILLAFAQVSKNNTVAHLEP-----DHVKYYRDVVAMKLLNPNLKVLISVT--DAG-TG--N------------F-- 147 (424)
Q Consensus 92 ~~Thv~~~f~~~~~~g~~~~~~~-----~~~~~~~~~~~lk~~n~~~kvllsvg--~~~-~~--~------------~-- 147 (424)
..-.|+.....++++|....... +.-..++++.+..|++.+.|+++-+. +.. +. . +
T Consensus 444 G~glii~e~~~v~~~g~~~~~~~~~~~d~~i~~~~~~~~~vh~~gg~~i~~QL~h~Gr~~~~~~~~~~~~~~~~~~~~~~ 523 (765)
T PRK08255 444 GAGLVMTEMTCVSPEGRITPGCPGLYNDEQEAAWKRIVDFVHANSDAKIGIQLGHSGRKGSTRLGWEGIDEPLEEGNWPL 523 (765)
T ss_pred CCcEEEECCeEECCCcCCCCCCCccCCHHHHHHHHHHHHHHHhcCCceEEEEccCCcccccccccccccccccccCCCce
Confidence 35556666667777665432211 22256777777666652489998886 110 00 0 0
Q ss_pred ---h-----------hhhcC---HHHHHHHHHHHHHHHHcCCCCEEEEecc---------CCCC------CCCCchhhHH
Q psy1028 148 ---A-----------KAVST---RANRLAFSESILEFLIEHNLDGIDLDWE---------FPGW------PGPNKSHEKR 195 (424)
Q Consensus 148 ---~-----------~~~~~---~~~r~~fi~~i~~~l~~~gfDGIdiDwE---------~~~~------~~~~~~~~~~ 195 (424)
+ .-++. .+..+.|++.... +++-|||||+|.-- .|.. .|++-++...
T Consensus 524 ~~pS~~~~~~~~~~p~~mt~~eI~~~i~~f~~aA~~-a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r 602 (765)
T PRK08255 524 ISASPLPYLPGSQVPREMTRADMDRVRDDFVAAARR-AAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLR 602 (765)
T ss_pred eCCCCCcCCCCCCCCCcCCHHHHHHHHHHHHHHHHH-HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhH
Confidence 0 00111 1245566665544 45579999999865 2322 1344442345
Q ss_pred HHHHHHHHHHHHcCCCcEEEEEecCCccccccccC------h-hhhhc-cccEEEeee
Q psy1028 196 MFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYD------V-PLMGR-LVDFVSIMG 245 (424)
Q Consensus 196 ~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d------~-~~l~~-~vD~v~vmt 245 (424)
.....++.+|++.+.++.|++-+.+..+.. .+.+ + +.|.+ -+|+|.|-.
T Consensus 603 ~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~-~g~~~~~~~~~~~~l~~~g~d~i~vs~ 659 (765)
T PRK08255 603 YPLEVFRAVRAVWPAEKPMSVRISAHDWVE-GGNTPDDAVEIARAFKAAGADLIDVSS 659 (765)
T ss_pred HHHHHHHHHHHhcCCCCeeEEEEccccccC-CCCCHHHHHHHHHHHHhcCCcEEEeCC
Confidence 566788999999988899999888743321 1222 2 22333 279998863
No 67
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=78.13 E-value=12 Score=36.21 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=58.9
Q ss_pred CceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCC----CCCCC---chhhHHHHHHHHHHH
Q psy1028 132 NLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPG----WPGPN---KSHEKRMFSKLLQQL 204 (424)
Q Consensus 132 ~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~----~~~~~---~~~~~~~~~~~l~~L 204 (424)
+..+.+.|.+.+ + +.|++... .+.+.|||||||+.-.|. ..|+. .. +.....++++++
T Consensus 62 e~p~~vQl~g~~----------p---~~~~~aA~-~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~-~~~~~~eiv~av 126 (312)
T PRK10550 62 GTLVRIQLLGQY----------P---QWLAENAA-RAVELGSWGVDLNCGCPSKTVNGSGGGATLLK-DPELIYQGAKAM 126 (312)
T ss_pred CCcEEEEeccCC----------H---HHHHHHHH-HHHHcCCCEEEEeCCCCchHHhcCCCchHhhc-CHHHHHHHHHHH
Confidence 456777776332 2 23444333 346679999999988775 22211 23 667788899999
Q ss_pred HHHcCCCcEEEEEecCCccccccccChhhhhc--cccEEEee
Q psy1028 205 KFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGR--LVDFVSIM 244 (424)
Q Consensus 205 r~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~--~vD~v~vm 244 (424)
|++++.++-||+-+.......+...++..+.+ -+|.+.|.
T Consensus 127 r~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh 168 (312)
T PRK10550 127 REAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGATELVVH 168 (312)
T ss_pred HHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCCEEEEC
Confidence 99986567788777654322111223333332 37888774
No 68
>PRK14706 glycogen branching enzyme; Provisional
Probab=76.79 E-value=29 Score=37.18 Aligned_cols=62 Identities=15% Similarity=0.199 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c-CCC-----------C-------------Cchh---hhcCHHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D-AGT-----------G-------------NFAK---AVSTRANRLAFSESILEFL 168 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~-~~~-----------~-------------~~~~---~~~~~~~r~~fi~~i~~~l 168 (424)
..++.+++..+++ |++|++-+- . .+. . .|.. -..+++.|+-+++++.-||
T Consensus 217 ~~~~~lv~~~H~~-gi~VilD~v~nH~~~~~~~l~~~dg~~~y~~~~~~~g~~~~w~~~~~~~~~~eVr~~l~~~~~~W~ 295 (639)
T PRK14706 217 EDFKYLVNHLHGL-GIGVILDWVPGHFPTDESGLAHFDGGPLYEYADPRKGYHYDWNTYIFDYGRNEVVMFLIGSALKWL 295 (639)
T ss_pred HHHHHHHHHHHHC-CCEEEEEecccccCcchhhhhccCCCcceeccCCcCCcCCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 5677777777776 999999876 1 110 0 0000 1246788999999999999
Q ss_pred HcCCCCEEEEec
Q psy1028 169 IEHNLDGIDLDW 180 (424)
Q Consensus 169 ~~~gfDGIdiDw 180 (424)
+++++||+-+|-
T Consensus 296 ~e~~iDG~R~Da 307 (639)
T PRK14706 296 QDFHVDGLRVDA 307 (639)
T ss_pred HHhCCCeEEEee
Confidence 999999999993
No 69
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=74.27 E-value=45 Score=31.76 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=54.1
Q ss_pred hhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCC-C--chhh
Q psy1028 117 VKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGP-N--KSHE 193 (424)
Q Consensus 117 ~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~-~--~~~~ 193 (424)
+..++.+...+++ .+.+++++|+... .+.|++ ++..+++.|+|+|+|++-.|...+. . -. +
T Consensus 75 ~~~~~~~~~~~~~-~~~p~ivsi~g~~-------------~~~~~~-~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~-~ 138 (296)
T cd04740 75 EAFLEELLPWLRE-FGTPVIASIAGST-------------VEEFVE-VAEKLADAGADAIELNISCPNVKGGGMAFGT-D 138 (296)
T ss_pred HHHHHHHHHHhhc-CCCcEEEEEecCC-------------HHHHHH-HHHHHHHcCCCEEEEECCCCCCCCCcccccC-C
Confidence 4555666665543 3788999997321 234444 4445677799999999877654321 1 13 4
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 194 KRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 194 ~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
...+.++++.+|+.. ++-|++-+.+
T Consensus 139 ~~~~~eiv~~vr~~~--~~Pv~vKl~~ 163 (296)
T cd04740 139 PEAVAEIVKAVKKAT--DVPVIVKLTP 163 (296)
T ss_pred HHHHHHHHHHHHhcc--CCCEEEEeCC
Confidence 567778888888876 3445555544
No 70
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=74.08 E-value=29 Score=33.23 Aligned_cols=86 Identities=12% Similarity=0.189 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCC-CCEEEEeccCCCCCC-C--Cchh
Q psy1028 117 VKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHN-LDGIDLDWEFPGWPG-P--NKSH 192 (424)
Q Consensus 117 ~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~g-fDGIdiDwE~~~~~~-~--~~~~ 192 (424)
+..++.+...+++. +..++++|++.. .+.|++ ++..+++.| +|||+|+.--|.... + -.+
T Consensus 77 ~~~~~~~~~~~~~~-~~p~i~si~g~~-------------~~~~~~-~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~- 140 (301)
T PRK07259 77 DAFIEEELPWLEEF-DTPIIANVAGST-------------EEEYAE-VAEKLSKAPNVDAIELNISCPNVKHGGMAFGT- 140 (301)
T ss_pred HHHHHHHHHHHhcc-CCcEEEEeccCC-------------HHHHHH-HHHHHhccCCcCEEEEECCCCCCCCCcccccc-
Confidence 34455555544443 678999997322 234544 344567888 999999885554322 1 123
Q ss_pred hHHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 193 EKRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 193 ~~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
+.+.+.++++.+|++. ++-|++-+.+
T Consensus 141 ~~~~~~eiv~~vr~~~--~~pv~vKl~~ 166 (301)
T PRK07259 141 DPELAYEVVKAVKEVV--KVPVIVKLTP 166 (301)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEEcCC
Confidence 5567888899998887 4556665554
No 71
>PRK12313 glycogen branching enzyme; Provisional
Probab=74.05 E-value=42 Score=35.91 Aligned_cols=61 Identities=20% Similarity=0.207 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c-CCC--C---------C-------------ch---hhhcCHHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D-AGT--G---------N-------------FA---KAVSTRANRLAFSESILEFL 168 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~-~~~--~---------~-------------~~---~~~~~~~~r~~fi~~i~~~l 168 (424)
+.++++++..|++ |+||++=+- . .+. . . |. --..+++.|+-+++++.-|+
T Consensus 220 ~d~k~lv~~~H~~-Gi~VilD~V~nH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~n~~~~~vr~~l~~~~~~W~ 298 (633)
T PRK12313 220 EDFMYLVDALHQN-GIGVILDWVPGHFPKDDDGLAYFDGTPLYEYQDPRRAENPDWGALNFDLGKNEVRSFLISSALFWL 298 (633)
T ss_pred HHHHHHHHHHHHC-CCEEEEEECCCCCCCCcccccccCCCcceeecCCCCCcCCCCCCcccCCCCHHHHHHHHHHHHHHH
Confidence 5678888877777 999999876 1 110 0 0 00 01235788999999999999
Q ss_pred HcCCCCEEEEe
Q psy1028 169 IEHNLDGIDLD 179 (424)
Q Consensus 169 ~~~gfDGIdiD 179 (424)
++|++||+-||
T Consensus 299 ~~~~iDG~R~D 309 (633)
T PRK12313 299 DEYHLDGLRVD 309 (633)
T ss_pred HHhCCcEEEEc
Confidence 99999999999
No 72
>PLN03244 alpha-amylase; Provisional
Probab=73.75 E-value=38 Score=36.92 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c-CCCC--------------Cch--------------hhhcCHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D-AGTG--------------NFA--------------KAVSTRANRLAFSESILEF 167 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~-~~~~--------------~~~--------------~~~~~~~~r~~fi~~i~~~ 167 (424)
+.++.++...+++ |++|+|=|- . ++.+ .|. --...++.|+-++.++.-|
T Consensus 441 eDLK~LVD~aH~~-GI~VILDvV~NH~~~d~~~GL~~fDGt~~~Yf~~~~~g~~~~WGs~~fnyg~~EVr~FLLsna~yW 519 (872)
T PLN03244 441 DDFKRLVDEAHGL-GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHTGKRGHHKHWGTRMFKYGDLDVLHFLISNLNWW 519 (872)
T ss_pred HHHHHHHHHHHHC-CCEEEEEecCccCCCccccchhhcCCCccceeccCCCCccCCCCCceecCCCHHHHHHHHHHHHHH
Confidence 5678888877777 999999876 1 1100 111 0123467888999999999
Q ss_pred HHcCCCCEEEEe
Q psy1028 168 LIEHNLDGIDLD 179 (424)
Q Consensus 168 l~~~gfDGIdiD 179 (424)
|++|++||+-+|
T Consensus 520 leEyhIDGFRfD 531 (872)
T PLN03244 520 ITEYQIDGFQFH 531 (872)
T ss_pred HHHhCcCcceee
Confidence 999999999998
No 73
>PLN02960 alpha-amylase
Probab=73.68 E-value=22 Score=39.17 Aligned_cols=61 Identities=13% Similarity=0.181 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c-CCCC--------------Cch-----------h---hhcCHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D-AGTG--------------NFA-----------K---AVSTRANRLAFSESILEF 167 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~-~~~~--------------~~~-----------~---~~~~~~~r~~fi~~i~~~ 167 (424)
..++.+++..+++ |++|+|-+- . .+.+ .|. . -..++..|+-++.++.-|
T Consensus 466 ~dfk~LVd~aH~~-GI~VILDvV~NH~~~d~~~~L~~FDG~~~~Yf~~~~~g~~~~WG~~~fNy~~~eVr~fLlsna~yW 544 (897)
T PLN02960 466 DDFKRLVDEAHGL-GLLVFLDIVHSYAAADEMVGLSLFDGSNDCYFHSGKRGHHKRWGTRMFKYGDHEVLHFLLSNLNWW 544 (897)
T ss_pred HHHHHHHHHHHHC-CCEEEEEecccccCCccccchhhcCCCccceeecCCCCccCCCCCcccCCCCHHHHHHHHHHHHHH
Confidence 5677788777776 999999885 1 1000 111 0 135678899999999999
Q ss_pred HHcCCCCEEEEe
Q psy1028 168 LIEHNLDGIDLD 179 (424)
Q Consensus 168 l~~~gfDGIdiD 179 (424)
|++|++||+-+|
T Consensus 545 l~EyhIDGfR~D 556 (897)
T PLN02960 545 VTEYRVDGFQFH 556 (897)
T ss_pred HHHHCCCceeec
Confidence 999999999998
No 74
>PRK14705 glycogen branching enzyme; Provisional
Probab=73.24 E-value=30 Score=39.73 Aligned_cols=62 Identities=18% Similarity=0.198 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c-CCCC-----------Cch-------------h---hhcCHHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D-AGTG-----------NFA-------------K---AVSTRANRLAFSESILEFL 168 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~-~~~~-----------~~~-------------~---~~~~~~~r~~fi~~i~~~l 168 (424)
..++.+++..|++ |++||+=+- + +..+ .+. . -..+++.|+-+++++.-|+
T Consensus 815 ~dfk~lVd~~H~~-GI~VILD~V~nH~~~d~~~l~~fdg~~~y~~~d~~~g~~~~Wg~~~fn~~~~eVr~fli~~a~~Wl 893 (1224)
T PRK14705 815 DEFRFLVDSLHQA-GIGVLLDWVPAHFPKDSWALAQFDGQPLYEHADPALGEHPDWGTLIFDFGRTEVRNFLVANALYWL 893 (1224)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeccccCCcchhhhhhcCCCcccccCCcccCCCCCCCCceecCCCHHHHHHHHHHHHHHH
Confidence 5677788877776 999999876 1 1100 000 0 1246788899999999999
Q ss_pred HcCCCCEEEEec
Q psy1028 169 IEHNLDGIDLDW 180 (424)
Q Consensus 169 ~~~gfDGIdiDw 180 (424)
++|++||+-+|-
T Consensus 894 ~eyhiDGfR~Da 905 (1224)
T PRK14705 894 DEFHIDGLRVDA 905 (1224)
T ss_pred HHhCCCcEEEee
Confidence 999999999995
No 75
>PF07364 DUF1485: Protein of unknown function (DUF1485); InterPro: IPR015995 Proteins in this entry are involved in degradation of the cyanobacterial heptapeptide hepatotoxin microcystin LR, and are encoded in the mlr gene cluster []. MlrC from Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) is believed to mediate the last step of peptidolytic degradation of the tetrapeptide. It is suspected to be a metallopeptidase based on homology to known peptidases and its inhibition by metal chelators. The proteins encoded by the mlr cluster may be involved in cell wall peptidoglycan cycling and subsequently act fortuitously in hydrolysis of microcystin LR. This entry represents the N-terminal region of these proteins.; PDB: 3IUU_A.
Probab=71.87 E-value=36 Score=32.58 Aligned_cols=110 Identities=16% Similarity=0.139 Sum_probs=64.6
Q ss_pred HHHHHHHHHhCCCceEEEEEe-cCCCCCchhhhcCHHHHHHHHHHHHHHHHcCC-CCEEEEeccCCCCCCCCchhhHHHH
Q psy1028 120 YRDVVAMKLLNPNLKVLISVT-DAGTGNFAKAVSTRANRLAFSESILEFLIEHN-LDGIDLDWEFPGWPGPNKSHEKRMF 197 (424)
Q Consensus 120 ~~~~~~lk~~n~~~kvllsvg-~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~g-fDGIdiDwE~~~~~~~~~~~~~~~~ 197 (424)
..-+.+..+++ +..+++.+- ...+.. .-+.+.-+.+...|++-|+..+ +|||-|+.-.-..--+ .+ |.+
T Consensus 47 ~~g~~~~a~~~-g~e~vp~~~a~A~P~G----~v~~~aye~l~~eil~~l~~agp~Dgv~L~LHGAmv~e~-~~-D~E-- 117 (292)
T PF07364_consen 47 IGGFLDAAEAQ-GWEVVPLLWAAAEPGG----PVTREAYERLRDEILDRLRAAGPLDGVLLDLHGAMVAEG-YD-DGE-- 117 (292)
T ss_dssp HHHHHHHHHHT-T-EEEEEEEEEE-SEE-----B-HHHHHHHHHHHHHHHHHS---SEEEEEE-S---BSS--S-SHH--
T ss_pred hHHHHHHHHHC-CCEEEeeEeeeecCCC----cccHHHHHHHHHHHHHHHHhcCCcCEEEEeccCcEeecC-CC-Cch--
Confidence 33455544454 889999988 222221 1244677889999999999986 9999999864332111 11 222
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEee
Q psy1028 198 SKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIM 244 (424)
Q Consensus 198 ~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vm 244 (424)
..||+.+|+.++++.-|.+++-.... --+.|.+.+|.++..
T Consensus 118 G~Ll~rvR~~vGp~vpI~~tlDlHaN------vs~~mv~~ad~~~~y 158 (292)
T PF07364_consen 118 GDLLRRVRAIVGPDVPIAATLDLHAN------VSPRMVEAADIIVGY 158 (292)
T ss_dssp HHHHHHHHHHHTTTSEEEEEE-TT----------HHHHHH-SEEEE-
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCCC------ccHHHHHhCCEEEEc
Confidence 35999999999987877777655332 125788899987543
No 76
>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []. Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.
Probab=70.43 E-value=71 Score=29.67 Aligned_cols=145 Identities=16% Similarity=0.124 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMF 197 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~ 197 (424)
..+++.+++.+++ ++ .++.|++ .|..+. .+.-++..++.+++.|||.|+|.=-...- ..+..
T Consensus 54 ~~l~eki~l~~~~-gV--~v~~GGt---l~E~a~-----~q~~~~~yl~~~k~lGf~~IEiSdGti~l-------~~~~r 115 (244)
T PF02679_consen 54 EILKEKIDLAHSH-GV--YVYPGGT---LFEVAY-----QQGKFDEYLEECKELGFDAIEISDGTIDL-------PEEER 115 (244)
T ss_dssp HHHHHHHHHHHCT-T---EEEE-HH---HHHHHH-----HTT-HHHHHHHHHHCT-SEEEE--SSS----------HHHH
T ss_pred HHHHHHHHHHHHc-CC--eEeCCcH---HHHHHH-----hcChHHHHHHHHHHcCCCEEEecCCceeC-------CHHHH
Confidence 5677888888876 55 5556622 123222 24457888899999999999997443322 33455
Q ss_pred HHHHHHHHHHcCCCcEEEEEecCCccccccccChh--------hhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCC
Q psy1028 198 SKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVP--------LMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVT 269 (424)
Q Consensus 198 ~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~--------~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~ 269 (424)
..+|+.+++ .++.+-.-+...........+.. .|..-+|+|.+-+= ..|-. .++...+
T Consensus 116 ~~~I~~~~~---~Gf~v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEar----------EsG~~-Gi~~~~g 181 (244)
T PF02679_consen 116 LRLIRKAKE---EGFKVLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEAR----------ESGKG-GIYDNDG 181 (244)
T ss_dssp HHHHHHHCC---TTSEEEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--T----------TT--S-TTB-TTS
T ss_pred HHHHHHHHH---CCCEEeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeee----------ccCCC-CccCCCC
Confidence 555555544 55555555554332111111222 23446788888742 12222 4443332
Q ss_pred CCCCCccccHHHHHHHHHHcCCCCCceEeeccc
Q psy1028 270 DQGYFKSLNANWSVNYYLYKGIPANKLLLGLPT 302 (424)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~ 302 (424)
. +-...+..+++. ++++||+.--|-
T Consensus 182 ~-------~r~d~v~~i~~~-~~~~~lifEAp~ 206 (244)
T PF02679_consen 182 E-------VRTDLVEKIIER-LGLEKLIFEAPQ 206 (244)
T ss_dssp --------B-HHHHHHHHTT-S-GGGEEEE--S
T ss_pred C-------ccHHHHHHHHHh-CCHhHEEEeCCC
Confidence 2 457778888874 999999987664
No 77
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=69.94 E-value=15 Score=33.13 Aligned_cols=64 Identities=19% Similarity=0.162 Sum_probs=42.7
Q ss_pred HHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEeee
Q psy1028 166 EFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMG 245 (424)
Q Consensus 166 ~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmt 245 (424)
+.+.+.|.|-|-+.+|... ....+++.+|+ .+....+++.+.... -.++.+.+.+|+|.||+
T Consensus 74 ~~~~~~g~~~i~~H~E~~~-----------~~~~~i~~ik~---~g~k~GialnP~T~~----~~~~~~l~~vD~VlvMs 135 (201)
T PF00834_consen 74 EEFAEAGADYITFHAEATE-----------DPKETIKYIKE---AGIKAGIALNPETPV----EELEPYLDQVDMVLVMS 135 (201)
T ss_dssp HHHHHHT-SEEEEEGGGTT-----------THHHHHHHHHH---TTSEEEEEE-TTS-G----GGGTTTGCCSSEEEEES
T ss_pred HHHHhcCCCEEEEcccchh-----------CHHHHHHHHHH---hCCCEEEEEECCCCc----hHHHHHhhhcCEEEEEE
Confidence 3345568999999999541 23356677776 578888888775442 23567788999999998
Q ss_pred cc
Q psy1028 246 YD 247 (424)
Q Consensus 246 YD 247 (424)
-+
T Consensus 136 V~ 137 (201)
T PF00834_consen 136 VE 137 (201)
T ss_dssp S-
T ss_pred ec
Confidence 65
No 78
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=69.94 E-value=49 Score=33.01 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=54.1
Q ss_pred hhhHHHHHHHHHHhCCCceEEEEEec-CCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCC----C--
Q psy1028 116 HVKYYRDVVAMKLLNPNLKVLISVTD-AGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPG----P-- 188 (424)
Q Consensus 116 ~~~~~~~~~~lk~~n~~~kvllsvg~-~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~----~-- 188 (424)
.+..++.+.+++++.|++.|+.||.+ ...+ .+ ..+++.+++.|.|+|+|++--|...+ +
T Consensus 97 ~~~~l~~i~~~k~~~~~~pvIaSi~~~~s~~-------------~~-~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~ 162 (385)
T PLN02495 97 FETMLAEFKQLKEEYPDRILIASIMEEYNKD-------------AW-EEIIERVEETGVDALEINFSCPHGMPERKMGAA 162 (385)
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEccCCCCHH-------------HH-HHHHHHHHhcCCCEEEEECCCCCCCCcCccchh
Confidence 44667777788877778899999952 2212 21 22334456789999999998765421 1
Q ss_pred CchhhHHHHHHHHHHHHHHcCCCcEEEEE
Q psy1028 189 NKSHEKRMFSKLLQQLKFTLSGRFLMTVA 217 (424)
Q Consensus 189 ~~~~~~~~~~~~l~~Lr~~l~~~~~ls~a 217 (424)
-.+ +.+....+++.+|+..+..+.+-++
T Consensus 163 ~gq-~~e~~~~i~~~Vk~~~~iPv~vKLs 190 (385)
T PLN02495 163 VGQ-DCDLLEEVCGWINAKATVPVWAKMT 190 (385)
T ss_pred hcc-CHHHHHHHHHHHHHhhcCceEEEeC
Confidence 123 5566667777777776544444443
No 79
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=69.67 E-value=20 Score=32.55 Aligned_cols=101 Identities=12% Similarity=0.208 Sum_probs=54.6
Q ss_pred hCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCC------CCCCchhhHHHHHHHHH
Q psy1028 129 LNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGW------PGPNKSHEKRMFSKLLQ 202 (424)
Q Consensus 129 ~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~------~~~~~~~~~~~~~~~l~ 202 (424)
...+..++++|++.. + +.|++. ...+++.|||||+|+.-.|.. .|+....+.....++++
T Consensus 51 ~~~~~p~~~qi~g~~----------~---~~~~~a-a~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~ 116 (231)
T cd02801 51 NPEERPLIVQLGGSD----------P---ETLAEA-AKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVR 116 (231)
T ss_pred CccCCCEEEEEcCCC----------H---HHHHHH-HHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHH
Confidence 345789999997332 1 233333 334456799999999765432 11222214566778899
Q ss_pred HHHHHcCCCcEEEEEecCCccccccccC-hhhhhc-cccEEEeee
Q psy1028 203 QLKFTLSGRFLMTVAVAAPGPIIDRAYD-VPLMGR-LVDFVSIMG 245 (424)
Q Consensus 203 ~Lr~~l~~~~~ls~av~~~~~~~~~~~d-~~~l~~-~vD~v~vmt 245 (424)
++|+.++ .-+++-+...........+ .+.+.+ -+|++.|..
T Consensus 117 ~v~~~~~--~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i~v~~ 159 (231)
T cd02801 117 AVREAVP--IPVTVKIRLGWDDEEETLELAKALEDAGASALTVHG 159 (231)
T ss_pred HHHHhcC--CCEEEEEeeccCCchHHHHHHHHHHHhCCCEEEECC
Confidence 9998875 4444444332211101111 222322 378887753
No 80
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=68.00 E-value=52 Score=31.82 Aligned_cols=97 Identities=11% Similarity=0.104 Sum_probs=53.2
Q ss_pred CCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCC-----CCCC--chhhHHHHHHHHHH
Q psy1028 131 PNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGW-----PGPN--KSHEKRMFSKLLQQ 203 (424)
Q Consensus 131 ~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~-----~~~~--~~~~~~~~~~~l~~ 203 (424)
.+..+++.|++.+.+ .|++ .+..+++.|||||||+.--|.. .+|. .. +.....++++.
T Consensus 61 ~~~p~i~ql~g~~~~-------------~~~~-aa~~~~~~G~d~IelN~gcP~~~~~~~~~Gs~l~~-~~~~~~ei~~~ 125 (319)
T TIGR00737 61 DETPISVQLFGSDPD-------------TMAE-AAKINEELGADIIDINMGCPVPKITKKGAGSALLR-DPDLIGKIVKA 125 (319)
T ss_pred ccceEEEEEeCCCHH-------------HHHH-HHHHHHhCCCCEEEEECCCCHHHhcCCCccchHhC-CHHHHHHHHHH
Confidence 356777888743322 3333 3335677899999999876632 1222 12 45677788888
Q ss_pred HHHHcCCCcEEEEEecCCccccc-cccChh-hhhc-cccEEEee
Q psy1028 204 LKFTLSGRFLMTVAVAAPGPIID-RAYDVP-LMGR-LVDFVSIM 244 (424)
Q Consensus 204 Lr~~l~~~~~ls~av~~~~~~~~-~~~d~~-~l~~-~vD~v~vm 244 (424)
+|++++ +-|++-+........ ...++. .+.+ -+|.+.|.
T Consensus 126 vr~~~~--~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i~vh 167 (319)
T TIGR00737 126 VVDAVD--IPVTVKIRIGWDDAHINAVEAARIAEDAGAQAVTLH 167 (319)
T ss_pred HHhhcC--CCEEEEEEcccCCCcchHHHHHHHHHHhCCCEEEEE
Confidence 888875 344554432211100 111222 2333 37999885
No 81
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=67.62 E-value=24 Score=38.13 Aligned_cols=86 Identities=14% Similarity=0.207 Sum_probs=53.9
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-cC---CC-------------CCchh-------------------hhcCHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-DA---GT-------------GNFAK-------------------AVSTRANRLAFS 161 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~~---~~-------------~~~~~-------------------~~~~~~~r~~fi 161 (424)
..++++++..|++ |++|++=+- .. +. ..+.. -..++..|+-++
T Consensus 245 ~efk~LV~~~H~~-GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~ 323 (688)
T TIGR02100 245 AEFKTMVRALHDA-GIEVILDVVYNHTAEGNELGPTLSFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVM 323 (688)
T ss_pred HHHHHHHHHHHHC-CCEEEEEECcCCccCcCCCCCcccccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHH
Confidence 4577777766666 999999887 11 00 00000 023567788888
Q ss_pred HHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHH
Q psy1028 162 ESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFT 207 (424)
Q Consensus 162 ~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~ 207 (424)
+++.-|++++|+||+-||.-..... ... .......|+++|+..
T Consensus 324 d~l~~W~~e~gIDGfR~D~a~~l~~--~~~-~~~~~~~~~~~i~~d 366 (688)
T TIGR02100 324 DSLRYWVTEMHVDGFRFDLATTLGR--ELY-GFDMLSGFFTAIRQD 366 (688)
T ss_pred HHHHHHHHHcCCcEEEEechhhhcc--ccC-CCcccHHHHHHHHhC
Confidence 9999999999999999997543211 000 112234577777763
No 82
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=67.60 E-value=68 Score=31.43 Aligned_cols=115 Identities=12% Similarity=0.042 Sum_probs=65.8
Q ss_pred hHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCC-CchhhHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGP-NKSHEKRM 196 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~-~~~~~~~~ 196 (424)
...+.+.+.+ .++.|++||+..... ......+.|++.+..+ .. +.|+|+|++--|...+. ..+ +.+.
T Consensus 126 ~~~~~l~~~~---~~~pvivsI~~~~~~------~~~~~~~d~~~~~~~~-~~-~ad~lelN~scP~~~g~~~~~-~~~~ 193 (344)
T PRK05286 126 ALAERLKKAY---RGIPLGINIGKNKDT------PLEDAVDDYLICLEKL-YP-YADYFTVNISSPNTPGLRDLQ-YGEA 193 (344)
T ss_pred HHHHHHHHhc---CCCcEEEEEecCCCC------CcccCHHHHHHHHHHH-Hh-hCCEEEEEccCCCCCCccccc-CHHH
Confidence 3444444433 378899999833211 1122344555555554 33 49999999987755332 244 6778
Q ss_pred HHHHHHHHHHHcCC---CcEEEEEecCCccccccccChhh-hhc-cccEEEeee
Q psy1028 197 FSKLLQQLKFTLSG---RFLMTVAVAAPGPIIDRAYDVPL-MGR-LVDFVSIMG 245 (424)
Q Consensus 197 ~~~~l~~Lr~~l~~---~~~ls~av~~~~~~~~~~~d~~~-l~~-~vD~v~vmt 245 (424)
+.++++.+|+..+. ++-|.+-+.+.... +...++.+ +.+ -+|.|.+..
T Consensus 194 ~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~-~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 194 LDELLAALKEAQAELHGYVPLLVKIAPDLSD-EELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred HHHHHHHHHHHHhccccCCceEEEeCCCCCH-HHHHHHHHHHHHhCCcEEEEeC
Confidence 88999999998852 35566666643221 01112222 222 478988874
No 83
>KOG3111|consensus
Probab=66.54 E-value=25 Score=31.21 Aligned_cols=65 Identities=14% Similarity=0.236 Sum_probs=48.4
Q ss_pred HHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEee
Q psy1028 165 LEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIM 244 (424)
Q Consensus 165 ~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vm 244 (424)
+.-+.+-|.+.+-|.+|... ....+++.+|+ ++..+.+++-+... --++..+++.+|.+.||
T Consensus 80 V~~~a~agas~~tfH~E~~q-----------~~~~lv~~ir~---~Gmk~G~alkPgT~----Ve~~~~~~~~~D~vLvM 141 (224)
T KOG3111|consen 80 VDQMAKAGASLFTFHYEATQ-----------KPAELVEKIRE---KGMKVGLALKPGTP----VEDLEPLAEHVDMVLVM 141 (224)
T ss_pred HHHHHhcCcceEEEEEeecc-----------CHHHHHHHHHH---cCCeeeEEeCCCCc----HHHHHHhhccccEEEEE
Confidence 44456678999999999652 25567777776 78899999987654 23456677899999999
Q ss_pred ecc
Q psy1028 245 GYD 247 (424)
Q Consensus 245 tYD 247 (424)
|-.
T Consensus 142 tVe 144 (224)
T KOG3111|consen 142 TVE 144 (224)
T ss_pred Eec
Confidence 874
No 84
>PLN02877 alpha-amylase/limit dextrinase
Probab=66.16 E-value=45 Score=37.29 Aligned_cols=31 Identities=13% Similarity=0.159 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCEEEEeccCCC
Q psy1028 154 RANRLAFSESILEFLIEHNLDGIDLDWEFPG 184 (424)
Q Consensus 154 ~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~ 184 (424)
+-.|+-+++++.-|+++|++||.-+|.-...
T Consensus 534 ~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i 564 (970)
T PLN02877 534 YMVDRLIVDDLLNWAVNYKVDGFRFDLMGHL 564 (970)
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEEccccc
Confidence 4567888999999999999999999987653
No 85
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=66.15 E-value=40 Score=32.63 Aligned_cols=33 Identities=15% Similarity=0.148 Sum_probs=27.9
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCC
Q psy1028 151 VSTRANRLAFSESILEFLIEHNLDGIDLDWEFP 183 (424)
Q Consensus 151 ~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~ 183 (424)
+.+++.|+-|.+.+.+.+.+.|+||+=+|+-.+
T Consensus 128 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 128 ATNPEAREYYWKQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred CCCHHHHHHHHHHHHHHhhcCCCcEEEecCCCC
Confidence 367888888889899999999999999998554
No 86
>PF14885 GHL15: Hypothetical glycosyl hydrolase family 15
Probab=64.23 E-value=9.4 Score=28.74 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=28.7
Q ss_pred CchhhhcC-HHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy1028 146 NFAKAVST-RANRLAFSESILEFLIEHNLDGIDLDW 180 (424)
Q Consensus 146 ~~~~~~~~-~~~r~~fi~~i~~~l~~~gfDGIdiDw 180 (424)
.+.....+ +.-|+.+++.|++.+..-.||||-+|-
T Consensus 40 ~~~~~~~~~~~~r~~w~~~v~e~~~~s~~DGv~~Dn 75 (79)
T PF14885_consen 40 HYQMYVWSCPDYRRYWVDAVVEELQNSPWDGVFADN 75 (79)
T ss_pred eeeeccCCcchHHHHHHHHHHHHHhcCccceeeeec
Confidence 33334444 899999999999999988999999984
No 87
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=64.11 E-value=33 Score=32.96 Aligned_cols=33 Identities=9% Similarity=0.026 Sum_probs=27.8
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCC
Q psy1028 151 VSTRANRLAFSESILEFLIEHNLDGIDLDWEFP 183 (424)
Q Consensus 151 ~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~ 183 (424)
+.+++.|+=+.+.+..++.++|+||+=+|+-.+
T Consensus 134 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 134 FTNPEAVDWFLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCcEEEeCCCCc
Confidence 467888888888888888899999999998554
No 88
>PRK03705 glycogen debranching enzyme; Provisional
Probab=63.95 E-value=27 Score=37.50 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-cCCCC----------------Cc------------h----h-hhcCHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-DAGTG----------------NF------------A----K-AVSTRANRLAFSES 163 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~~~~~----------------~~------------~----~-~~~~~~~r~~fi~~ 163 (424)
..++++++..|++ |+||++=|- ..... .+ . . -..++..|+-++++
T Consensus 242 ~efk~LV~~~H~~-GI~VIlDvV~NHt~~~~~~~~~~~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~ 320 (658)
T PRK03705 242 DEFRDAVKALHKA-GIEVILDVVFNHSAELDLDGPTLSLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDC 320 (658)
T ss_pred HHHHHHHHHHHHC-CCEEEEEEcccCccCcCCCCcchhcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHH
Confidence 3577777766666 999999887 11100 00 0 0 11367888999999
Q ss_pred HHHHHHcCCCCEEEEeccC
Q psy1028 164 ILEFLIEHNLDGIDLDWEF 182 (424)
Q Consensus 164 i~~~l~~~gfDGIdiDwE~ 182 (424)
+.-|+++||+||.-||.-.
T Consensus 321 l~~W~~e~gVDGFRfD~a~ 339 (658)
T PRK03705 321 LRYWVETCHVDGFRFDLAT 339 (658)
T ss_pred HHHHHHHhCCCEEEEEcHh
Confidence 9999999999999999744
No 89
>PRK10785 maltodextrin glucosidase; Provisional
Probab=62.97 E-value=32 Score=36.54 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=33.0
Q ss_pred cCHHHHHHHHH----HHHHHHHc-CCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC
Q psy1028 152 STRANRLAFSE----SILEFLIE-HNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS 209 (424)
Q Consensus 152 ~~~~~r~~fi~----~i~~~l~~-~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~ 209 (424)
.+++.|+.+++ -+..|+++ +|+||.-||--...... . ....-..|++++|++++
T Consensus 303 ~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v~~~---~-~~~~~~~f~~~~~~~vk 361 (598)
T PRK10785 303 QSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHMLGEG---G-GARNNLQHVAGITQAAK 361 (598)
T ss_pred CCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHhccc---c-CccccHHHHHHHHHHHH
Confidence 35777888885 34557776 89999999954221100 0 11122367777777775
No 90
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=62.73 E-value=20 Score=38.02 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=35.5
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe----cCCCCCchhhhcCHHHHHHHHHHHHHHH-HcCCCCEEEEeccCCCCCCCCchh
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT----DAGTGNFAKAVSTRANRLAFSESILEFL-IEHNLDGIDLDWEFPGWPGPNKSH 192 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg----~~~~~~~~~~~~~~~~r~~fi~~i~~~l-~~~gfDGIdiDwE~~~~~~~~~~~ 192 (424)
-.+..+.+.|++||++|+.+.== |-+.. +..-..++... +.-++++| -.+.-.|+||||=.+-.
T Consensus 113 ye~~L~~eAKkrNP~ikl~~L~W~~PgW~~~g-~~~~~~~~~~~---a~Y~~~wl~ga~~~~gl~idYvg~~N------- 181 (669)
T PF02057_consen 113 YEWWLMAEAKKRNPNIKLYGLPWGFPGWVGNG-WNWPYDNPQLT---AYYVVSWLLGAKKTHGLDIDYVGIWN------- 181 (669)
T ss_dssp SHHHHHHHHHHH-TT-EEEEEES-B-GGGGTT-SS-TTSSHHHH---HHHHHHHHHHHHHHH-----EE-S-T-------
T ss_pred hhhhhHHHHHhhCCCCeEEEeccCCCccccCC-CCCcccchhhh---hHHHHHHHHHHHHHhCCCceEechhh-------
Confidence 35777889999999999875432 22211 11111122222 22334444 22233456777755422
Q ss_pred hHHHHHHHHHHHHHHcC
Q psy1028 193 EKRMFSKLLQQLKFTLS 209 (424)
Q Consensus 193 ~~~~~~~~l~~Lr~~l~ 209 (424)
++..=...++.||.+|.
T Consensus 182 Er~~~~~~ik~lr~~l~ 198 (669)
T PF02057_consen 182 ERGFDVNYIKWLRKALN 198 (669)
T ss_dssp TS---HHHHHHHHHHHH
T ss_pred ccCCChhHHHHHHHHHh
Confidence 22223457788888887
No 91
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=62.63 E-value=1e+02 Score=26.69 Aligned_cols=90 Identities=8% Similarity=0.072 Sum_probs=50.7
Q ss_pred CCccEEEEEEEEecCCCeEeecC---C----ChhhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHH----HH
Q psy1028 91 NLCTHILLAFAQVSKNNTVAHLE---P----DHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANR----LA 159 (424)
Q Consensus 91 ~~~Thv~~~f~~~~~~g~~~~~~---~----~~~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r----~~ 159 (424)
-.|..||+.+..... ....... . .....+..+.+++.++ |+||++.++.. ...|.+ .+.+.. ..
T Consensus 32 ~GidtlIlq~~~~~~-~~~yps~~~~~~~~~~~~d~l~~~L~~A~~~-Gmkv~~Gl~~~-~~~w~~--~~~~~~~~~~~~ 106 (166)
T PF14488_consen 32 IGIDTLILQWTGYGG-FAFYPSKLSPGGFYMPPVDLLEMILDAADKY-GMKVFVGLYFD-PDYWDQ--GDLDWEAERNKQ 106 (166)
T ss_pred cCCcEEEEEEeecCC-cccCCccccCccccCCcccHHHHHHHHHHHc-CCEEEEeCCCC-chhhhc--cCHHHHHHHHHH
Confidence 468888888765542 1111111 0 1224677777877777 99999999811 111221 333333 34
Q ss_pred HHHHHHHHHHcC-CCCEEEEeccCCCC
Q psy1028 160 FSESILEFLIEH-NLDGIDLDWEFPGW 185 (424)
Q Consensus 160 fi~~i~~~l~~~-gfDGIdiDwE~~~~ 185 (424)
.++.+.+.-..+ .|.|--|-.|.-..
T Consensus 107 v~~el~~~yg~h~sf~GWYip~E~~~~ 133 (166)
T PF14488_consen 107 VADELWQRYGHHPSFYGWYIPYEIDDY 133 (166)
T ss_pred HHHHHHHHHcCCCCCceEEEecccCCc
Confidence 445554433333 49999999996543
No 92
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=61.78 E-value=76 Score=34.63 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c-CCC--------------CCch-----------h---hhcCHHHHHHHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D-AGT--------------GNFA-----------K---AVSTRANRLAFSESILEF 167 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~-~~~--------------~~~~-----------~---~~~~~~~r~~fi~~i~~~ 167 (424)
..++.+++..+++ |++|++=|- . ... ..|. . -..+++.|+-+++++.-|
T Consensus 300 ~dlk~LVd~aH~~-GI~VilDvV~nH~~~~~~~gl~~fDg~~~~Yf~~~~~g~~~~w~~~~~N~~~~eVr~fLl~~~~~W 378 (758)
T PLN02447 300 EDLKYLIDKAHSL-GLRVLMDVVHSHASKNTLDGLNGFDGTDGSYFHSGPRGYHWLWDSRLFNYGNWEVLRFLLSNLRWW 378 (758)
T ss_pred HHHHHHHHHHHHC-CCEEEEEeccccccccccccccccCCCCccccccCCCCCcCcCCCceecCCCHHHHHHHHHHHHHH
Confidence 5677787777776 999999876 1 100 0010 0 013467888889999999
Q ss_pred HHcCCCCEEEEe
Q psy1028 168 LIEHNLDGIDLD 179 (424)
Q Consensus 168 l~~~gfDGIdiD 179 (424)
+++|++||+-||
T Consensus 379 l~ey~IDGfRfD 390 (758)
T PLN02447 379 LEEYKFDGFRFD 390 (758)
T ss_pred HHHhCccccccc
Confidence 999999999998
No 93
>PRK08005 epimerase; Validated
Probab=60.53 E-value=32 Score=31.22 Aligned_cols=65 Identities=17% Similarity=0.088 Sum_probs=45.0
Q ss_pred HHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEee
Q psy1028 165 LEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIM 244 (424)
Q Consensus 165 ~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vm 244 (424)
+..+.+.|.|-|-|.+|... ....+++.+|+ .+....+|+.+... --.+..+.+.+|+|.||
T Consensus 74 i~~~~~~gad~It~H~Ea~~-----------~~~~~l~~Ik~---~G~k~GlAlnP~Tp----~~~i~~~l~~vD~VlvM 135 (210)
T PRK08005 74 LPWLAAIRPGWIFIHAESVQ-----------NPSEILADIRA---IGAKAGLALNPATP----LLPYRYLALQLDALMIM 135 (210)
T ss_pred HHHHHHhCCCEEEEcccCcc-----------CHHHHHHHHHH---cCCcEEEEECCCCC----HHHHHHHHHhcCEEEEE
Confidence 34455578999999999541 23356666666 46777888877643 12345677899999999
Q ss_pred ecc
Q psy1028 245 GYD 247 (424)
Q Consensus 245 tYD 247 (424)
+-+
T Consensus 136 sV~ 138 (210)
T PRK08005 136 TSE 138 (210)
T ss_pred Eec
Confidence 875
No 94
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=60.21 E-value=63 Score=33.86 Aligned_cols=28 Identities=25% Similarity=0.222 Sum_probs=21.9
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEec
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLDW 180 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiDw 180 (424)
.+++.|+.+++.+..+++ +|+||+-||-
T Consensus 171 ~np~vr~~l~~~~~~w~~-~GvDGfRlDa 198 (539)
T TIGR02456 171 DNPAVHDAVHDVMRFWLD-LGVDGFRLDA 198 (539)
T ss_pred CCHHHHHHHHHHHHHHHH-cCCCEEEEec
Confidence 357778777777777775 8999999994
No 95
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=60.20 E-value=1e+02 Score=29.43 Aligned_cols=106 Identities=10% Similarity=0.141 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcC--CCCEEEEeccCCCCCCCC---chh
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEH--NLDGIDLDWEFPGWPGPN---KSH 192 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~--gfDGIdiDwE~~~~~~~~---~~~ 192 (424)
...+.+...++.. +..++++|.+.. + +.++ .+++.+++. ++|+|||++--|...+.. -.
T Consensus 77 ~~~~~~~~~~~~~-~~pl~~qi~g~~----------~---~~~~-~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~- 140 (300)
T TIGR01037 77 AFLEELKPVREEF-PTPLIASVYGSS----------V---EEFA-EVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQ- 140 (300)
T ss_pred HHHHHHHHHhccC-CCcEEEEeecCC----------H---HHHH-HHHHHHHhccCccCEEEEECCCCCCCCCcccccc-
Confidence 3444444444433 567899996322 1 1233 344444543 499999999877654311 23
Q ss_pred hHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhh-hh-ccccEEEee
Q psy1028 193 EKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPL-MG-RLVDFVSIM 244 (424)
Q Consensus 193 ~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~-l~-~~vD~v~vm 244 (424)
+.+...++++++|++. ++-|++-+.+... ....+.. +. .-+|.+.+.
T Consensus 141 ~~~~~~eiv~~vr~~~--~~pv~vKi~~~~~---~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 141 DPELSADVVKAVKDKT--DVPVFAKLSPNVT---DITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred CHHHHHHHHHHHHHhc--CCCEEEECCCChh---hHHHHHHHHHHcCCCEEEEE
Confidence 5667888999999887 3556666654221 1122222 22 247999875
No 96
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=59.79 E-value=22 Score=34.65 Aligned_cols=164 Identities=15% Similarity=0.124 Sum_probs=77.3
Q ss_pred ChhhHHHHHHHHHHhCCCceEEEEEe----cCC------CCCchhh--hcCHHHHHHHHHHHHHHHHcCCCCEEEEeccC
Q psy1028 115 DHVKYYRDVVAMKLLNPNLKVLISVT----DAG------TGNFAKA--VSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182 (424)
Q Consensus 115 ~~~~~~~~~~~lk~~n~~~kvllsvg----~~~------~~~~~~~--~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~ 182 (424)
+.+...+..++.|+. |+||||-+. |.+ +..|..+ ..=.+....+...+++.|+..| +..||=.
T Consensus 56 ~~~~~~~~akrak~~--Gm~vlldfHYSD~WaDPg~Q~~P~aW~~~~~~~l~~~v~~yT~~vl~~l~~~G---~~pd~VQ 130 (332)
T PF07745_consen 56 DLEDVIALAKRAKAA--GMKVLLDFHYSDFWADPGKQNKPAAWANLSFDQLAKAVYDYTKDVLQALKAAG---VTPDMVQ 130 (332)
T ss_dssp SHHHHHHHHHHHHHT--T-EEEEEE-SSSS--BTTB-B--TTCTSSSHHHHHHHHHHHHHHHHHHHHHTT-----ESEEE
T ss_pred CHHHHHHHHHHHHHC--CCeEEEeecccCCCCCCCCCCCCccCCCCCHHHHHHHHHHHHHHHHHHHHHCC---CCccEEE
Confidence 444556666666666 999999999 332 2223322 0012445566777777777755 6677755
Q ss_pred CCCC--------CCCchhhHHHHHHHHHHHHHHcC---CCcEEEEEecCCccccccccChhhhhc---cccEEEeeeccc
Q psy1028 183 PGWP--------GPNKSHEKRMFSKLLQQLKFTLS---GRFLMTVAVAAPGPIIDRAYDVPLMGR---LVDFVSIMGYDY 248 (424)
Q Consensus 183 ~~~~--------~~~~~~~~~~~~~~l~~Lr~~l~---~~~~ls~av~~~~~~~~~~~d~~~l~~---~vD~v~vmtYD~ 248 (424)
.+.. .+... +.+++..||+.-.++++ ++..+.+-+...........-+..|.+ -.|.|-+--|-
T Consensus 131 VGNEin~Gmlwp~g~~~-~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP- 208 (332)
T PF07745_consen 131 VGNEINNGMLWPDGKPS-NWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYP- 208 (332)
T ss_dssp ESSSGGGESTBTTTCTT--HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-S-
T ss_pred eCccccccccCcCCCcc-CHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCC-
Confidence 4432 12355 78888888866555555 444444444433221111122333322 34555554443
Q ss_pred CCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCCCceEeecccceeeeeecC
Q psy1028 249 HSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVN 311 (424)
Q Consensus 249 ~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~YG~~~~~~~ 311 (424)
. | +..+. .+...++.+.+. ..+ +|++.= .|+.|++.+
T Consensus 209 --~-w-------~~~l~------------~l~~~l~~l~~r-y~K-~V~V~E--t~yp~t~~d 245 (332)
T PF07745_consen 209 --F-W-------HGTLE------------DLKNNLNDLASR-YGK-PVMVVE--TGYPWTLDD 245 (332)
T ss_dssp --T-T-------ST-HH------------HHHHHHHHHHHH-HT--EEEEEE--E---SBS--
T ss_pred --C-C-------cchHH------------HHHHHHHHHHHH-hCC-eeEEEe--ccccccccc
Confidence 2 3 11333 677778877653 333 444443 244565543
No 97
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=59.17 E-value=1.2e+02 Score=29.04 Aligned_cols=87 Identities=9% Similarity=0.190 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCC----C--Cch
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPG----P--NKS 191 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~----~--~~~ 191 (424)
...+.+.++++..++..++.++.+. .++ +.|++ +++.+++.++|+|||++-.|...+ + -.+
T Consensus 85 ~~~~~~~~~~~~~~~~p~i~si~G~---------~~~---~~~~~-~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~ 151 (299)
T cd02940 85 YWLKEIRELKKDFPDKILIASIMCE---------YNK---EDWTE-LAKLVEEAGADALELNFSCPHGMPERGMGAAVGQ 151 (299)
T ss_pred HHHHHHHHHHhhCCCCeEEEEecCC---------CCH---HHHHH-HHHHHHhcCCCEEEEECCCCCCCCCCCCchhhcc
Confidence 4455566666554456677777532 011 24443 344556678999999998776421 1 124
Q ss_pred hhHHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 192 HEKRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 192 ~~~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
+.+.+.++++.+|+..+. -|++-+.+
T Consensus 152 -~~~~~~~iv~~v~~~~~~--Pv~vKl~~ 177 (299)
T cd02940 152 -DPELVEEICRWVREAVKI--PVIAKLTP 177 (299)
T ss_pred -CHHHHHHHHHHHHHhcCC--CeEEECCC
Confidence 677888999999987743 34444443
No 98
>PF08869 XisI: XisI protein; InterPro: IPR014968 The fdxN element, along with two other DNA elements, is excised from the chromosome during heterocyst differentiation in cyanobacteria. The xisH as well as the xisF and xisI genes are required []. ; PDB: 3D7Q_A 2NWV_A 2NVM_A 2NLV_B.
Probab=58.97 E-value=6.9 Score=31.47 Aligned_cols=21 Identities=19% Similarity=0.460 Sum_probs=16.0
Q ss_pred HHHHHHHHHcCCCCCceEeec
Q psy1028 280 NWSVNYYLYKGIPANKLLLGL 300 (424)
Q Consensus 280 ~~~~~~~~~~gvp~~KlvlGl 300 (424)
....+.++++|||++.||||+
T Consensus 77 ~gIa~eLve~GVpk~dIVLgF 97 (111)
T PF08869_consen 77 DGIAEELVEAGVPKEDIVLGF 97 (111)
T ss_dssp SHHHHHHHHTT--GGGEEETT
T ss_pred hHHHHHHHHcCCCHHHEEEcc
Confidence 455677899999999999996
No 99
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=58.71 E-value=52 Score=31.81 Aligned_cols=33 Identities=27% Similarity=0.353 Sum_probs=28.8
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCC
Q psy1028 151 VSTRANRLAFSESILEFLIEHNLDGIDLDWEFP 183 (424)
Q Consensus 151 ~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~ 183 (424)
..+++.|+=+.+.+..++.+.|+||+=+|+-.|
T Consensus 129 ftnp~a~~ww~~~~~~~~~~~gvdg~w~D~~Ep 161 (317)
T cd06600 129 FTNPDTREWWAGLFSEWLNSQGVDGIWLDMNEP 161 (317)
T ss_pred CCChHHHHHHHHHHHHHhhcCCCceEEeeCCCC
Confidence 367899999999998988899999999998655
No 100
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=57.62 E-value=69 Score=31.33 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=27.9
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCC
Q psy1028 151 VSTRANRLAFSESILEFLIEHNLDGIDLDWEFP 183 (424)
Q Consensus 151 ~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~ 183 (424)
+.+++.|+=+.+.+.+++.+.|+||+=+|+-.+
T Consensus 134 ftnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 134 FLNPNTQEWWTDEIKDFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 467888888888888889999999999998665
No 101
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=56.89 E-value=44 Score=30.72 Aligned_cols=65 Identities=14% Similarity=0.140 Sum_probs=45.0
Q ss_pred HHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCc--EEEEEecCCccccccccChhhhhccccEEE
Q psy1028 165 LEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRF--LMTVAVAAPGPIIDRAYDVPLMGRLVDFVS 242 (424)
Q Consensus 165 ~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~--~ls~av~~~~~~~~~~~d~~~l~~~vD~v~ 242 (424)
++.+.+.|.|-|-|..|... ....+|+.+|+ .+. ...+|+.+... --.+..+.+.+|+|.
T Consensus 84 i~~~~~aGad~It~H~Ea~~-----------~~~~~l~~Ik~---~g~~~kaGlalnP~Tp----~~~i~~~l~~vD~VL 145 (228)
T PRK08091 84 AKACVAAGADIVTLQVEQTH-----------DLALTIEWLAK---QKTTVLIGLCLCPETP----ISLLEPYLDQIDLIQ 145 (228)
T ss_pred HHHHHHhCCCEEEEcccCcc-----------cHHHHHHHHHH---CCCCceEEEEECCCCC----HHHHHHHHhhcCEEE
Confidence 34455669999999999541 23456666666 344 77788877544 234567788999999
Q ss_pred eeecc
Q psy1028 243 IMGYD 247 (424)
Q Consensus 243 vmtYD 247 (424)
||+-+
T Consensus 146 iMtV~ 150 (228)
T PRK08091 146 ILTLD 150 (228)
T ss_pred EEEEC
Confidence 99875
No 102
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=55.79 E-value=1.9e+02 Score=27.67 Aligned_cols=85 Identities=14% Similarity=0.131 Sum_probs=43.3
Q ss_pred CCCceEEEEEe----cCCCC------CchhhhcC--HHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCC--------CC
Q psy1028 130 NPNLKVLISVT----DAGTG------NFAKAVST--RANRLAFSESILEFLIEHNLDGIDLDWEFPGWPG--------PN 189 (424)
Q Consensus 130 n~~~kvllsvg----~~~~~------~~~~~~~~--~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~--------~~ 189 (424)
+.|.|||+-+. |.++. .|..+--+ ....-.+-+.+++-+++ .||++||-..+... |.
T Consensus 115 ~~GmKVl~dFHYSDfwaDPakQ~kPkaW~~l~fe~lk~avy~yTk~~l~~m~~---eGi~pdmVQVGNEtn~gflwp~Ge 191 (403)
T COG3867 115 NLGMKVLLDFHYSDFWADPAKQKKPKAWENLNFEQLKKAVYSYTKYVLTTMKK---EGILPDMVQVGNETNGGFLWPDGE 191 (403)
T ss_pred hcCcEEEeeccchhhccChhhcCCcHHhhhcCHHHHHHHHHHHHHHHHHHHHH---cCCCccceEeccccCCceeccCCC
Confidence 44999999998 33321 22221111 11222444566666666 56888886554321 22
Q ss_pred chhhHHHHHHHHHHHHHHcC---CCcEEEEEe
Q psy1028 190 KSHEKRMFSKLLQQLKFTLS---GRFLMTVAV 218 (424)
Q Consensus 190 ~~~~~~~~~~~l~~Lr~~l~---~~~~ls~av 218 (424)
.. +.+.+..|+.+=..+++ +..++.+-+
T Consensus 192 ~~-~f~k~a~L~n~g~~avrev~p~ikv~lHl 222 (403)
T COG3867 192 GR-NFDKMAALLNAGIRAVREVSPTIKVALHL 222 (403)
T ss_pred Cc-ChHHHHHHHHHHhhhhhhcCCCceEEEEe
Confidence 22 44556666665544554 444444433
No 103
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=54.57 E-value=15 Score=36.94 Aligned_cols=63 Identities=19% Similarity=0.294 Sum_probs=47.5
Q ss_pred hhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEe
Q psy1028 149 KAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAV 218 (424)
Q Consensus 149 ~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av 218 (424)
+.+++..-++..+..|+++|.++|||| -|-...... | ....|...++-|...++++|..+...
T Consensus 98 Rplrdk~yqq~c~~~I~~yL~engfd~-pis~k~l~~----P--S~k~F~~IFK~LY~~lDp~f~F~~r~ 160 (622)
T COG5185 98 RPLRDKNYQQACQEEIYDYLKENGFDI-PISIKFLKQ----P--SQKGFIIIFKWLYLRLDPGFGFTKRI 160 (622)
T ss_pred cccccchHHHHHHHHHHHHHHHcCCCc-chhHHHhcC----C--ccccHHHHHHHHHhccCCCCCcchhh
Confidence 367888899999999999999999998 222222111 2 35679999999999998888766544
No 104
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=53.96 E-value=1.9e+02 Score=28.13 Aligned_cols=113 Identities=11% Similarity=0.040 Sum_probs=63.3
Q ss_pred hHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCC-CchhhHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGP-NKSHEKRM 196 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~-~~~~~~~~ 196 (424)
..++++...+. .++-+++||++..... -++..+.|++.+..+- . ..|+|+|++--|...+. ..+ +.+.
T Consensus 116 ~~~~~l~~~~~--~~~plivsi~g~~~~~------~~~~~~d~~~~~~~~~-~-~ad~ielN~scP~~~g~~~~~-~~~~ 184 (327)
T cd04738 116 AVAKRLKKRRP--RGGPLGVNIGKNKDTP------LEDAVEDYVIGVRKLG-P-YADYLVVNVSSPNTPGLRDLQ-GKEA 184 (327)
T ss_pred HHHHHHHHhcc--CCCeEEEEEeCCCCCc------ccccHHHHHHHHHHHH-h-hCCEEEEECCCCCCCcccccc-CHHH
Confidence 34444444332 3678999998433221 1123345555444432 2 38999999976654321 234 6678
Q ss_pred HHHHHHHHHHHcC---CCcEEEEEecCCccccccccChhhhhc-----cccEEEeee
Q psy1028 197 FSKLLQQLKFTLS---GRFLMTVAVAAPGPIIDRAYDVPLMGR-----LVDFVSIMG 245 (424)
Q Consensus 197 ~~~~l~~Lr~~l~---~~~~ls~av~~~~~~~~~~~d~~~l~~-----~vD~v~vmt 245 (424)
+.++++.+|+... +++-|.+-+++... . -++..+++ -+|.|.+.+
T Consensus 185 ~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~-~---~~~~~ia~~l~~aGad~I~~~n 237 (327)
T cd04738 185 LRELLTAVKEERNKLGKKVPLLVKIAPDLS-D---EELEDIADVALEHGVDGIIATN 237 (327)
T ss_pred HHHHHHHHHHHHhhcccCCCeEEEeCCCCC-H---HHHHHHHHHHHHcCCcEEEEEC
Confidence 8899999998874 23556666654321 0 12222322 478887653
No 105
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=53.33 E-value=1.2e+02 Score=30.54 Aligned_cols=87 Identities=16% Similarity=0.188 Sum_probs=52.6
Q ss_pred hHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCC---C-CC--ch
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWP---G-PN--KS 191 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~---~-~~--~~ 191 (424)
...+.+..+++..++..++++|.+.. ++ +.++ ..+..+++.|+|+|+|++-.|... + +. .+
T Consensus 85 ~~~~~~~~~~~~~~~~p~i~si~g~~---------~~---~~~~-~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~ 151 (420)
T PRK08318 85 VNLREIRRVKRDYPDRALIASIMVEC---------NE---EEWK-EIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQ 151 (420)
T ss_pred HHHHHHHHHHhhCCCceEEEEeccCC---------CH---HHHH-HHHHHHHhcCCCEEEEeCCCCCCccccCCcccccC
Confidence 34445556655544566788885320 11 2223 344455677899999999887621 1 11 24
Q ss_pred hhHHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 192 HEKRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 192 ~~~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
+.+.+.++++.+++..+.. |++-+.+
T Consensus 152 -~~~~~~~i~~~v~~~~~~P--v~vKl~p 177 (420)
T PRK08318 152 -VPELVEMYTRWVKRGSRLP--VIVKLTP 177 (420)
T ss_pred -CHHHHHHHHHHHHhccCCc--EEEEcCC
Confidence 6788899999999887533 4444443
No 106
>KOG1552|consensus
Probab=51.99 E-value=24 Score=32.83 Aligned_cols=47 Identities=13% Similarity=0.183 Sum_probs=30.8
Q ss_pred EEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCCCCceEe
Q psy1028 240 FVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLL 298 (424)
Q Consensus 240 ~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp~~Klvl 298 (424)
-+|+|+|||.|. +-..|-++...- ...++.+.+++.+..-++++|+|
T Consensus 88 n~nv~~~DYSGy---G~S~G~psE~n~---------y~Di~avye~Lr~~~g~~~~Iil 134 (258)
T KOG1552|consen 88 NCNVVSYDYSGY---GRSSGKPSERNL---------YADIKAVYEWLRNRYGSPERIIL 134 (258)
T ss_pred cceEEEEecccc---cccCCCcccccc---------hhhHHHHHHHHHhhcCCCceEEE
Confidence 478999999988 555555554421 12678888887754226777665
No 107
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=51.82 E-value=2.1e+02 Score=26.78 Aligned_cols=150 Identities=12% Similarity=0.020 Sum_probs=78.3
Q ss_pred CcEEEEEEeCCCCCCCCC---CCCCCCCCccEEEEEEEEecC--CCeEeecCC--------ChhhHHHHHHHHHHhCCCc
Q psy1028 67 NYQLFCYYSLPQNSSGLL---PHQLNPNLCTHILLAFAQVSK--NNTVAHLEP--------DHVKYYRDVVAMKLLNPNL 133 (424)
Q Consensus 67 ~~~vvgY~~~~~~~~~~~---~~~i~~~~~Thv~~~f~~~~~--~g~~~~~~~--------~~~~~~~~~~~lk~~n~~~ 133 (424)
++..++|+..-++..... +..+....++.|=+.+-.-|+ ||-+.-... ..+..++.+.+++++++++
T Consensus 9 ~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 88 (256)
T TIGR00262 9 EGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI 88 (256)
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 457899998622211111 122233456666555544443 664331110 2335677778888765567
Q ss_pred eEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcE
Q psy1028 134 KVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFL 213 (424)
Q Consensus 134 kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ 213 (424)
.++ .++-.+ +-.+ .=++..++.+.+.|.|||-|--+.+ + + ...+++.+|+ .++.
T Consensus 89 plv-~m~Y~N----------pi~~-~G~e~f~~~~~~aGvdgviipDlp~-------e-e---~~~~~~~~~~---~gl~ 142 (256)
T TIGR00262 89 PIG-LLTYYN----------LIFR-KGVEEFYAKCKEVGVDGVLVADLPL-------E-E---SGDLVEAAKK---HGVK 142 (256)
T ss_pred CEE-EEEecc----------HHhh-hhHHHHHHHHHHcCCCEEEECCCCh-------H-H---HHHHHHHHHH---CCCc
Confidence 655 333111 1000 0023345556778999999976643 1 2 2334444444 4555
Q ss_pred EEEEecCCccccccccChhhhhcccc-EEEeeec
Q psy1028 214 MTVAVAAPGPIIDRAYDVPLMGRLVD-FVSIMGY 246 (424)
Q Consensus 214 ls~av~~~~~~~~~~~d~~~l~~~vD-~v~vmtY 246 (424)
+...+.+... .-.++.+.+.+| |+.+|+.
T Consensus 143 ~i~lv~P~T~----~eri~~i~~~~~gfiy~vs~ 172 (256)
T TIGR00262 143 PIFLVAPNAD----DERLKQIAEKSQGFVYLVSR 172 (256)
T ss_pred EEEEECCCCC----HHHHHHHHHhCCCCEEEEEC
Confidence 5555554332 123567788888 9999985
No 108
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=51.53 E-value=1.2e+02 Score=28.98 Aligned_cols=89 Identities=15% Similarity=0.085 Sum_probs=53.7
Q ss_pred hhhHHHHHHHHHHh--CCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcC--CCCEEEEeccCCCCCCC--C
Q psy1028 116 HVKYYRDVVAMKLL--NPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEH--NLDGIDLDWEFPGWPGP--N 189 (424)
Q Consensus 116 ~~~~~~~~~~lk~~--n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~--gfDGIdiDwE~~~~~~~--~ 189 (424)
.+..++.+..++++ ..+.-+++||++. . +.+++.+..+.+.. +.|+|||++--|...+. -
T Consensus 73 ~~~~~~~i~~~~~~~~~~~~pvivsi~g~-~-------------~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~ 138 (294)
T cd04741 73 LDYYLEYIRTISDGLPGSAKPFFISVTGS-A-------------EDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPP 138 (294)
T ss_pred HHHHHHHHHHHhhhccccCCeEEEECCCC-H-------------HHHHHHHHHHHhhccccccEEEEECCCCCCCCcccc
Confidence 34555666665543 2466788888622 1 23444443433333 69999999987764322 1
Q ss_pred chhhHHHHHHHHHHHHHHcCCCcEEEEEecCC
Q psy1028 190 KSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAP 221 (424)
Q Consensus 190 ~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~ 221 (424)
.. +.+.+.++++.+|+..... |++-+++.
T Consensus 139 ~~-~~~~~~~i~~~v~~~~~iP--v~vKl~p~ 167 (294)
T cd04741 139 AY-DFDATLEYLTAVKAAYSIP--VGVKTPPY 167 (294)
T ss_pred cC-CHHHHHHHHHHHHHhcCCC--EEEEeCCC
Confidence 23 5678899999999987543 55555543
No 109
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=50.18 E-value=1.1e+02 Score=28.95 Aligned_cols=58 Identities=10% Similarity=0.151 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCC
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP 183 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~ 183 (424)
..++++++-.++. |++|+|-+.+........ ..+. .+.+.+.+++.|..||-|||-.-
T Consensus 73 ~dl~elv~Ya~~K-gVgi~lw~~~~~~~~~~~------~~~~-~~~~f~~~~~~Gv~GvKidF~~~ 130 (273)
T PF10566_consen 73 FDLPELVDYAKEK-GVGIWLWYHSETGGNVAN------LEKQ-LDEAFKLYAKWGVKGVKIDFMDR 130 (273)
T ss_dssp --HHHHHHHHHHT-T-EEEEEEECCHTTBHHH------HHCC-HHHHHHHHHHCTEEEEEEE--SS
T ss_pred cCHHHHHHHHHHc-CCCEEEEEeCCcchhhHh------HHHH-HHHHHHHHHHcCCCEEeeCcCCC
Confidence 5677788766655 899999988332222222 2222 38888999999999999999765
No 110
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=49.62 E-value=58 Score=29.82 Aligned_cols=64 Identities=13% Similarity=0.085 Sum_probs=44.5
Q ss_pred HHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEeee
Q psy1028 166 EFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMG 245 (424)
Q Consensus 166 ~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmt 245 (424)
..+.+.|.|=|-|..|... ....+|+.+|+ .+....+++.+... --.+..+.+.+|.|.||+
T Consensus 79 ~~~~~~gad~I~~H~Ea~~-----------~~~~~l~~Ir~---~g~k~GlalnP~T~----~~~i~~~l~~vD~VlvMt 140 (223)
T PRK08745 79 PDFADAGATTISFHPEASR-----------HVHRTIQLIKS---HGCQAGLVLNPATP----VDILDWVLPELDLVLVMS 140 (223)
T ss_pred HHHHHhCCCEEEEcccCcc-----------cHHHHHHHHHH---CCCceeEEeCCCCC----HHHHHHHHhhcCEEEEEE
Confidence 3444569999999999541 23456666666 46677777776543 223566788999999998
Q ss_pred cc
Q psy1028 246 YD 247 (424)
Q Consensus 246 YD 247 (424)
-+
T Consensus 141 V~ 142 (223)
T PRK08745 141 VN 142 (223)
T ss_pred EC
Confidence 75
No 111
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=49.22 E-value=1.4e+02 Score=28.83 Aligned_cols=89 Identities=16% Similarity=0.219 Sum_probs=53.9
Q ss_pred ChhhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCC-CCEEEEeccCCCCCCCC--ch
Q psy1028 115 DHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHN-LDGIDLDWEFPGWPGPN--KS 191 (424)
Q Consensus 115 ~~~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~g-fDGIdiDwE~~~~~~~~--~~ 191 (424)
..+...+.+.+++++.++..++.||.+... +.+. .+++.+++.+ .|.|+|++--|...++. ..
T Consensus 75 g~~~~~~~i~~~~~~~~~~pvI~Si~G~~~-------------~~~~-~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~ 140 (310)
T PRK02506 75 GFDYYLDYVLELQKKGPNKPHFLSVVGLSP-------------EETH-TILKKIQASDFNGLVELNLSCPNVPGKPQIAY 140 (310)
T ss_pred CHHHHHHHHHHHHhhcCCCCEEEEEEeCcH-------------HHHH-HHHHHHhhcCCCCEEEEECCCCCCCCcccccc
Confidence 344556666666665446888899753221 1222 3334456777 79999999877432211 22
Q ss_pred hhHHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 192 HEKRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 192 ~~~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
+.+.+.++++.+|+..... |.+-+++
T Consensus 141 -d~~~~~~i~~~v~~~~~~P--v~vKlsp 166 (310)
T PRK02506 141 -DFETTEQILEEVFTYFTKP--LGVKLPP 166 (310)
T ss_pred -CHHHHHHHHHHHHHhcCCc--cEEecCC
Confidence 4567888999999887543 4444444
No 112
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B.
Probab=48.59 E-value=41 Score=33.36 Aligned_cols=109 Identities=10% Similarity=0.082 Sum_probs=51.1
Q ss_pred cCCCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEecCC------CC-Cc-----hhhhcCHHHHHHHHHHHHHHHHcC
Q psy1028 104 SKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAG------TG-NF-----AKAVSTRANRLAFSESILEFLIEH 171 (424)
Q Consensus 104 ~~~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg~~~------~~-~~-----~~~~~~~~~r~~fi~~i~~~l~~~ 171 (424)
.++|+..... +...+.|.+.+++. |+..++.+-++- +. .. ..-+ .+...+.|+.=|++.++.+
T Consensus 93 ~~dg~yDW~~---D~gQrwfL~~Ak~r-GV~~f~aFSNSPP~~MT~NG~~~g~~~~~~NL-k~d~y~~FA~YLa~Vv~~~ 167 (384)
T PF14587_consen 93 PADGSYDWDA---DAGQRWFLKAAKER-GVNIFEAFSNSPPWWMTKNGSASGGDDGSDNL-KPDNYDAFADYLADVVKHY 167 (384)
T ss_dssp -TTS-B-TTS---SHHHHHHHHHHHHT-T---EEEE-SSS-GGGSSSSSSB-S-SSS-SS--TT-HHHHHHHHHHHHHHH
T ss_pred CCCCCcCCCC---CHHHHHHHHHHHHc-CCCeEEEeecCCCHHHhcCCCCCCCCcccccc-ChhHHHHHHHHHHHHHHHH
Confidence 3455544432 23334454444443 899999887111 00 00 1112 3466788888777777777
Q ss_pred CCCEEEEeccCCCCCC----------CCchhhHHHHHHHHHHHHHHcC-CCcEEEEEe
Q psy1028 172 NLDGIDLDWEFPGWPG----------PNKSHEKRMFSKLLQQLKFTLS-GRFLMTVAV 218 (424)
Q Consensus 172 gfDGIdiDwE~~~~~~----------~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls~av 218 (424)
.=.||.|++=.|.... |.+- +.+....||+.|+.+|. +++.-.|++
T Consensus 168 ~~~GI~f~~IsP~NEP~~~W~~~~QEG~~~-~~~e~a~vI~~L~~~L~~~GL~t~I~~ 224 (384)
T PF14587_consen 168 KKWGINFDYISPFNEPQWNWAGGSQEGCHF-TNEEQADVIRALDKALKKRGLSTKISA 224 (384)
T ss_dssp HCTT--EEEEE--S-TTS-GG--SS-B-----HHHHHHHHHHHHHHHHHHT-S-EEEE
T ss_pred HhcCCccceeCCcCCCCCCCCCCCcCCCCC-CHHHHHHHHHHHHHHHHhcCCCceEEe
Confidence 5578888764333211 1233 56778999999999998 444433433
No 113
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=48.42 E-value=1.2e+02 Score=29.53 Aligned_cols=85 Identities=11% Similarity=0.093 Sum_probs=48.8
Q ss_pred hhhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCC-CCC-chhh
Q psy1028 116 HVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWP-GPN-KSHE 193 (424)
Q Consensus 116 ~~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~-~~~-~~~~ 193 (424)
.+...+.+..++++. +..|+++|.+.. + +.| ..++..+++.|+|+|+|++-.+... +.. .+ .
T Consensus 84 ~~~~~~~i~~~~~~~-~~pvi~si~g~~----------~---~~~-~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~-~ 147 (325)
T cd04739 84 PEEYLELIRRAKRAV-SIPVIASLNGVS----------A---GGW-VDYARQIEEAGADALELNIYALPTDPDISGAE-V 147 (325)
T ss_pred HHHHHHHHHHHHhcc-CCeEEEEeCCCC----------H---HHH-HHHHHHHHhcCCCEEEEeCCCCCCCCCcccch-H
Confidence 345566666665443 677888885321 1 222 2344455677899999999753221 111 11 2
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEE
Q psy1028 194 KRMFSKLLQQLKFTLSGRFLMTV 216 (424)
Q Consensus 194 ~~~~~~~l~~Lr~~l~~~~~ls~ 216 (424)
.+.+.++++.+|+..+..+.+-+
T Consensus 148 ~~~~~eiv~~v~~~~~iPv~vKl 170 (325)
T cd04739 148 EQRYLDILRAVKSAVTIPVAVKL 170 (325)
T ss_pred HHHHHHHHHHHHhccCCCEEEEc
Confidence 24567888888888754443333
No 114
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=47.37 E-value=70 Score=28.98 Aligned_cols=78 Identities=15% Similarity=0.085 Sum_probs=46.7
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEe
Q psy1028 164 ILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSI 243 (424)
Q Consensus 164 i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~v 243 (424)
+++.+...|+|-|-||+|+......... .+.++..+++.++..=..+..+-+.++...... ..-|+..+..-+|.|.+
T Consensus 13 ~~~~a~~~g~D~vilDlEd~~~~~~K~~-ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~-~~~Dl~~l~~g~~gI~l 90 (221)
T PF03328_consen 13 MLEKAAASGADFVILDLEDGVPPDEKDE-AREDLAEALRSIRAARAAGSEIIVRVNSLDSPH-IERDLEALDAGADGIVL 90 (221)
T ss_dssp HHHHHHTTCSSEEEEESSTTSSGGGHHH-HHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHH-HHHHHHHHHTTSSEEEE
T ss_pred HHHHHHhcCCCEEEEeCcccCCcccchh-hHHHHHHHHHhhcccccccccceecCCCCCcch-hhhhhhhcccCCCeeec
Confidence 4556778899999999998653111122 556777777777764335567788887754311 11233345556666644
No 115
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=47.00 E-value=61 Score=33.34 Aligned_cols=50 Identities=10% Similarity=0.070 Sum_probs=33.7
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS 209 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~ 209 (424)
.+++.|+.+++.+.-+++++|+||+-||--.-. ....+..+.+++++..+
T Consensus 206 ~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v--------~~~f~~~~~~~~~~~~~ 255 (479)
T PRK09441 206 RHPEVREELKYWAKWYMETTGFDGFRLDAVKHI--------DAWFIKEWIEHVREVAG 255 (479)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCC--------CHHHHHHHHHHHHHhcC
Confidence 357778888877666666799999999964322 33455566666665443
No 116
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=46.93 E-value=67 Score=30.11 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=35.8
Q ss_pred HHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCC
Q psy1028 122 DVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPG 184 (424)
Q Consensus 122 ~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~ 184 (424)
.+..|+++ |+|+++.+- +..|+=|.+.+.+++.+.|+||+=+|+-.+.
T Consensus 71 ~i~~l~~~--g~~~~~~~~-------------P~v~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 71 MIDELHDN--GVKLVLWID-------------PYIREWWAEVVKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred HHHHHHHC--CCEEEEEeC-------------hhHHHHHHHHHHHhhccCCCCEEeccCCCCC
Confidence 34446665 899999985 1117777777888888999999999986554
No 117
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=46.88 E-value=76 Score=29.20 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=43.9
Q ss_pred HHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEeee
Q psy1028 166 EFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMG 245 (424)
Q Consensus 166 ~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmt 245 (424)
..+.+.|.|=|-|..|... .....+++.+|+ .+....+|+.+... --.+..+.+.+|+|.||+
T Consensus 76 ~~~~~aGad~it~H~Ea~~----------~~~~~~i~~Ik~---~G~kaGlalnP~T~----~~~l~~~l~~vD~VLvMs 138 (229)
T PRK09722 76 DQLADAGADFITLHPETIN----------GQAFRLIDEIRR---AGMKVGLVLNPETP----VESIKYYIHLLDKITVMT 138 (229)
T ss_pred HHHHHcCCCEEEECccCCc----------chHHHHHHHHHH---cCCCEEEEeCCCCC----HHHHHHHHHhcCEEEEEE
Confidence 3344459999999999541 123345666665 46677788877544 234567788999999998
Q ss_pred cc
Q psy1028 246 YD 247 (424)
Q Consensus 246 YD 247 (424)
-+
T Consensus 139 V~ 140 (229)
T PRK09722 139 VD 140 (229)
T ss_pred Ec
Confidence 75
No 118
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=46.82 E-value=69 Score=29.24 Aligned_cols=64 Identities=16% Similarity=0.141 Sum_probs=44.8
Q ss_pred HHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEeee
Q psy1028 166 EFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMG 245 (424)
Q Consensus 166 ~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmt 245 (424)
..+.+.|.|=|-|..|.. .....+++.+|+ .+....+++.+... .-.+..+.+.+|.|.+|+
T Consensus 75 ~~~~~~gad~i~~H~Ea~-----------~~~~~~l~~ik~---~g~k~GlalnP~Tp----~~~i~~~l~~~D~vlvMt 136 (220)
T PRK08883 75 PDFAKAGASMITFHVEAS-----------EHVDRTLQLIKE---HGCQAGVVLNPATP----LHHLEYIMDKVDLILLMS 136 (220)
T ss_pred HHHHHhCCCEEEEcccCc-----------ccHHHHHHHHHH---cCCcEEEEeCCCCC----HHHHHHHHHhCCeEEEEE
Confidence 444557999999999954 124456666666 56677777777544 234567788999999998
Q ss_pred cc
Q psy1028 246 YD 247 (424)
Q Consensus 246 YD 247 (424)
-+
T Consensus 137 V~ 138 (220)
T PRK08883 137 VN 138 (220)
T ss_pred ec
Confidence 75
No 119
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=46.04 E-value=68 Score=31.00 Aligned_cols=32 Identities=19% Similarity=0.126 Sum_probs=26.2
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEeccCC
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLDWEFP 183 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~ 183 (424)
.+++.|+=|.+.+.+.+.+.|+||+=+|+..+
T Consensus 138 tnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 138 TNPEGREWWKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred CChHHHHHHHHHHHHHHhcCCCcEEEecCCCC
Confidence 57788888888887888889999999997544
No 120
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=45.88 E-value=2e+02 Score=26.34 Aligned_cols=111 Identities=15% Similarity=0.115 Sum_probs=63.1
Q ss_pred EEEecC-CCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy1028 100 FAQVSK-NNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDL 178 (424)
Q Consensus 100 f~~~~~-~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdi 178 (424)
++++|- ||.... +.....+.+..+|+..|.+. +-+. -+..++ ...++.+.+.|.|=|-+
T Consensus 35 ~~H~DimDg~fvp---n~~~G~~~v~~lr~~~~~~~--lDvH--------Lm~~~p-------~~~i~~~~~~Gad~itv 94 (228)
T PTZ00170 35 WLHVDVMDGHFVP---NLSFGPPVVKSLRKHLPNTF--LDCH--------LMVSNP-------EKWVDDFAKAGASQFTF 94 (228)
T ss_pred EEEEecccCccCC---CcCcCHHHHHHHHhcCCCCC--EEEE--------ECCCCH-------HHHHHHHHHcCCCEEEE
Confidence 344444 665443 22234566777887644443 3333 122332 22334555679999999
Q ss_pred eccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhh--ccccEEEeeecc
Q psy1028 179 DWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMG--RLVDFVSIMGYD 247 (424)
Q Consensus 179 DwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~--~~vD~v~vmtYD 247 (424)
..|.. . ......++.+|+ .++.+.+++.+... .-++..+. ..+|+|.+|+.+
T Consensus 95 H~ea~---------~-~~~~~~l~~ik~---~G~~~gval~p~t~----~e~l~~~l~~~~vD~Vl~m~v~ 148 (228)
T PTZ00170 95 HIEAT---------E-DDPKAVARKIRE---AGMKVGVAIKPKTP----VEVLFPLIDTDLVDMVLVMTVE 148 (228)
T ss_pred eccCC---------c-hHHHHHHHHHHH---CCCeEEEEECCCCC----HHHHHHHHccchhhhHHhhhcc
Confidence 99964 1 114455666655 45677777776433 12344555 778999999876
No 121
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=44.22 E-value=2.6e+02 Score=25.76 Aligned_cols=97 Identities=13% Similarity=0.106 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHH-HHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAF-SESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRM 196 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~f-i~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~ 196 (424)
..++.+.++|++. ++++++++-. ..+. +. +...++.+.+.|.|||-|--.++ +.
T Consensus 63 ~~~~~~~~vr~~~-~~pv~lm~y~------n~~~-------~~G~~~fi~~~~~aG~~giiipDl~~-----------ee 117 (242)
T cd04724 63 DVLELVKEIRKKN-TIPIVLMGYY------NPIL-------QYGLERFLRDAKEAGVDGLIIPDLPP-----------EE 117 (242)
T ss_pred HHHHHHHHHhhcC-CCCEEEEEec------CHHH-------HhCHHHHHHHHHHCCCcEEEECCCCH-----------HH
Confidence 4566677777664 6676655421 0010 00 23345556777999999943322 12
Q ss_pred HHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhc-cccEEEeeec
Q psy1028 197 FSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGR-LVDFVSIMGY 246 (424)
Q Consensus 197 ~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~-~vD~v~vmtY 246 (424)
...+++.+|+ .++...+.+.+... .-.++.+.+ ..|++.+|+.
T Consensus 118 ~~~~~~~~~~---~g~~~i~~i~P~T~----~~~i~~i~~~~~~~vy~~s~ 161 (242)
T cd04724 118 AEEFREAAKE---YGLDLIFLVAPTTP----DERIKKIAELASGFIYYVSR 161 (242)
T ss_pred HHHHHHHHHH---cCCcEEEEeCCCCC----HHHHHHHHhhCCCCEEEEeC
Confidence 3344444444 56656666655432 123456666 8899999986
No 122
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=43.29 E-value=2.9e+02 Score=25.99 Aligned_cols=182 Identities=9% Similarity=0.052 Sum_probs=92.2
Q ss_pred CcEEEEEEeCCCCCCCCC---CCCCCCCCccEEEEEEEEecC--CCeEeecCC--------ChhhHHHHHHHHHHhCCCc
Q psy1028 67 NYQLFCYYSLPQNSSGLL---PHQLNPNLCTHILLAFAQVSK--NNTVAHLEP--------DHVKYYRDVVAMKLLNPNL 133 (424)
Q Consensus 67 ~~~vvgY~~~~~~~~~~~---~~~i~~~~~Thv~~~f~~~~~--~g~~~~~~~--------~~~~~~~~~~~lk~~n~~~ 133 (424)
++..++|+..-++..... +..+.-...+.|=+.+-.-|+ ||-+.-... ..+..++.+.+++++ +++
T Consensus 14 ~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~-~~~ 92 (263)
T CHL00200 14 QCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGE-IKA 92 (263)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC-CCC
Confidence 456899998622111111 111222345555444433333 554322110 223567777777754 567
Q ss_pred eEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcE
Q psy1028 134 KVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFL 213 (424)
Q Consensus 134 kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ 213 (424)
.++++--. + ..|.. -.++| ++.+++-|.|||-|--+.+ + +... +++.+++ .++.
T Consensus 93 p~vlm~Y~-N-~i~~~------G~e~F----~~~~~~aGvdgviipDLP~-------e-e~~~---~~~~~~~---~gi~ 146 (263)
T CHL00200 93 PIVIFTYY-N-PVLHY------GINKF----IKKISQAGVKGLIIPDLPY-------E-ESDY---LISVCNL---YNIE 146 (263)
T ss_pred CEEEEecc-c-HHHHh------CHHHH----HHHHHHcCCeEEEecCCCH-------H-HHHH---HHHHHHH---cCCC
Confidence 75533221 1 10110 11233 4556778999999976654 1 3222 3333333 4555
Q ss_pred EEEEecCCccccccccChhhhhcccc-EEEeeecccCCCccCCCCCCCCCCCCCCCCCCCCCccccHHHHHHHHHHcCCC
Q psy1028 214 MTVAVAAPGPIIDRAYDVPLMGRLVD-FVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIP 292 (424)
Q Consensus 214 ls~av~~~~~~~~~~~d~~~l~~~vD-~v~vmtYD~~~~~w~~~~~g~~apl~~~~~~~~~~~~~~~~~~~~~~~~~gvp 292 (424)
+..-+.+... .-.++.+++.++ ||.+|+. ...+|....+.. .+...++...+. .
T Consensus 147 ~I~lv~PtT~----~eri~~i~~~a~gFIY~vS~--------~GvTG~~~~~~~-----------~~~~~i~~ir~~-t- 201 (263)
T CHL00200 147 LILLIAPTSS----KSRIQKIARAAPGCIYLVST--------TGVTGLKTELDK-----------KLKKLIETIKKM-T- 201 (263)
T ss_pred EEEEECCCCC----HHHHHHHHHhCCCcEEEEcC--------CCCCCCCccccH-----------HHHHHHHHHHHh-c-
Confidence 5555555432 234678889998 9999873 344555443331 456666666552 2
Q ss_pred CCceEeec
Q psy1028 293 ANKLLLGL 300 (424)
Q Consensus 293 ~~KlvlGl 300 (424)
.-.|++|.
T Consensus 202 ~~Pi~vGF 209 (263)
T CHL00200 202 NKPIILGF 209 (263)
T ss_pred CCCEEEEC
Confidence 34677774
No 123
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=42.96 E-value=84 Score=33.43 Aligned_cols=63 Identities=16% Similarity=0.226 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHhCCCceEEEEEe--cCCC----------C--------------Cchhh---hcCHHHHHHHHHHHHHH
Q psy1028 117 VKYYRDVVAMKLLNPNLKVLISVT--DAGT----------G--------------NFAKA---VSTRANRLAFSESILEF 167 (424)
Q Consensus 117 ~~~~~~~~~lk~~n~~~kvllsvg--~~~~----------~--------------~~~~~---~~~~~~r~~fi~~i~~~ 167 (424)
.+.++.++..++++ |+-|+|=+- -+.. . .|... ....+.|.=|+.++.-+
T Consensus 213 Pedfk~fVD~aH~~-GIgViLD~V~~HF~~d~~~L~~fdg~~~~e~~~~~~~~~~~Wg~~i~~~gr~EVR~Fll~nal~W 291 (628)
T COG0296 213 PEDFKALVDAAHQA-GIGVILDWVPNHFPPDGNYLARFDGTFLYEHEDPRRGEHTDWGTAIFNYGRNEVRNFLLANALYW 291 (628)
T ss_pred HHHHHHHHHHHHHc-CCEEEEEecCCcCCCCcchhhhcCCccccccCCcccccCCCcccchhccCcHHHHHHHHHHHHHH
Confidence 36788888888887 999998775 1111 0 11111 12467888899999999
Q ss_pred HHcCCCCEEEEec
Q psy1028 168 LIEHNLDGIDLDW 180 (424)
Q Consensus 168 l~~~gfDGIdiDw 180 (424)
|++|++||+-+|-
T Consensus 292 l~~yHiDGlRvDA 304 (628)
T COG0296 292 LEEYHIDGLRVDA 304 (628)
T ss_pred HHHhCCcceeeeh
Confidence 9999999999873
No 124
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=42.87 E-value=1.9e+02 Score=28.18 Aligned_cols=84 Identities=11% Similarity=0.123 Sum_probs=48.9
Q ss_pred hhhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCC-CCC-chhh
Q psy1028 116 HVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWP-GPN-KSHE 193 (424)
Q Consensus 116 ~~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~-~~~-~~~~ 193 (424)
.+...+.+..++++. ++.++++|+.... +.+ ..++..+++.|+|+|+|++-.|... +.. .+ .
T Consensus 86 ~d~~~~~i~~~~~~~-~~pvi~sI~g~~~-------------~e~-~~~a~~~~~agad~ielN~scpp~~~~~~g~~-~ 149 (334)
T PRK07565 86 PEEYLELIRRAKEAV-DIPVIASLNGSSA-------------GGW-VDYARQIEQAGADALELNIYYLPTDPDISGAE-V 149 (334)
T ss_pred HHHHHHHHHHHHHhc-CCcEEEEeccCCH-------------HHH-HHHHHHHHHcCCCEEEEeCCCCCCCCCCcccc-H
Confidence 344555566665553 6888999963221 122 2344556677999999998653221 111 11 2
Q ss_pred HHHHHHHHHHHHHHcCCCcEEE
Q psy1028 194 KRMFSKLLQQLKFTLSGRFLMT 215 (424)
Q Consensus 194 ~~~~~~~l~~Lr~~l~~~~~ls 215 (424)
.+.+.++++++++..+....+-
T Consensus 150 ~~~~~eil~~v~~~~~iPV~vK 171 (334)
T PRK07565 150 EQRYLDILRAVKSAVSIPVAVK 171 (334)
T ss_pred HHHHHHHHHHHHhccCCcEEEE
Confidence 2457788899988875443333
No 125
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=42.78 E-value=77 Score=29.94 Aligned_cols=83 Identities=18% Similarity=0.245 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCC----CCCC--CCchhhHHHHHHHHHHHHHHcC--CCcEEEEEecCCccccccccC
Q psy1028 159 AFSESILEFLIEHNLDGIDLDWEFP----GWPG--PNKSHEKRMFSKLLQQLKFTLS--GRFLMTVAVAAPGPIIDRAYD 230 (424)
Q Consensus 159 ~fi~~i~~~l~~~gfDGIdiDwE~~----~~~~--~~~~~~~~~~~~~l~~Lr~~l~--~~~~ls~av~~~~~~~~~~~d 230 (424)
..+.+-.+-|.+.|||||-||+=-+ ...+ .... .......|+.+|++..+ ++. +-+-+.......+ .+
T Consensus 126 dii~~~l~rL~d~GfdGvyLD~VD~y~Y~~~~~~~~~~~-~~k~m~~~i~~i~~~~ra~~~~-~~Vi~qng~~l~d--~~ 201 (300)
T COG2342 126 DIIRSYLDRLIDQGFDGVYLDVVDAYWYVEWNDRETGVN-AAKKMVKFIAAIAEYARAANPL-FRVIPQNGAELFD--AD 201 (300)
T ss_pred HHHHHHHHHHHHccCceEEEeeechHHHHHHhccccccc-HHHHHHHHHHHHHHHHHhcCCc-EEEEecccHhhcC--cc
Confidence 4455666677788999999996321 1110 1122 45667778888888777 333 5555554444332 33
Q ss_pred hhhhhccccE-EEeee
Q psy1028 231 VPLMGRLVDF-VSIMG 245 (424)
Q Consensus 231 ~~~l~~~vD~-v~vmt 245 (424)
...+...+++ +++-+
T Consensus 202 ~a~l~~~~~~~~~vE~ 217 (300)
T COG2342 202 GAGLLPRLGFGVAVET 217 (300)
T ss_pred ccchhhccccceEEEE
Confidence 3444443333 34433
No 126
>TIGR02803 ExbD_1 TonB system transport protein ExbD, group 1. Members of this family are Gram-negative bacterial inner membrane proteins, generally designated ExbD, related to the TolR family modeled by TIGRFAMs TIGR02801. Members always are encoded next to a protein designated ExbB (TIGR02797), related to the TolQ family modeled by TIGRFAMs TIGR02796. ExbD and ExbB together form a proton channel through which they can harness the proton-motive force to energize TonB, which in turn energizes TonB-dependent receptors in the outer membrane. TonB-dependent receptors with known specificity tend to import siderophores or vitamin B12. A TonB system and Tol-Pal system often will co-exist in a single bacterial genome.
Probab=42.25 E-value=1.6e+02 Score=23.85 Aligned_cols=64 Identities=8% Similarity=0.025 Sum_probs=39.1
Q ss_pred EecCCCeEeecCC--ChhhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy1028 102 QVSKNNTVAHLEP--DHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDL 178 (424)
Q Consensus 102 ~~~~~g~~~~~~~--~~~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdi 178 (424)
.++.+|.+.+.+. +.++....+.++++++|+..|++..- .+..-.-+-.+.+.+++.|+.-|.|
T Consensus 53 ~I~~~g~~~~~~~~v~~~~L~~~l~~~~~~~~~~~v~I~aD-------------~~~~~~~vv~v~d~~~~aG~~~v~l 118 (122)
T TIGR02803 53 SVKADLSLFVGNDPVARETLGTALDALTEGDKDTTIFFRAD-------------KTVDYGDLMKVMNLLRQAGYLKIGL 118 (122)
T ss_pred EEeCCCCEEECCccCCHHHHHHHHHHHHhcCCCceEEEEcC-------------CCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 4455666555322 23456666777777777776665542 1122244678888999999886655
No 127
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=42.11 E-value=2.2e+02 Score=24.29 Aligned_cols=69 Identities=14% Similarity=0.089 Sum_probs=44.3
Q ss_pred HHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEee
Q psy1028 165 LEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIM 244 (424)
Q Consensus 165 ~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vm 244 (424)
..++++.|+|+|.|.-+.+. .......+++++++.+ .+..+.+.+....... . ......-+|++.+.
T Consensus 77 a~~~~~~g~d~v~l~~~~~~--------~~~~~~~~~~~i~~~~-~~~~v~~~~~~~~~~~-~---~~~~~~g~d~i~~~ 143 (200)
T cd04722 77 AAAARAAGADGVEIHGAVGY--------LAREDLELIRELREAV-PDVKVVVKLSPTGELA-A---AAAEEAGVDEVGLG 143 (200)
T ss_pred HHHHHHcCCCEEEEeccCCc--------HHHHHHHHHHHHHHhc-CCceEEEEECCCCccc-h---hhHHHcCCCEEEEc
Confidence 67888899999999988752 2234556788888877 5677777776543211 1 00122347888776
Q ss_pred ec
Q psy1028 245 GY 246 (424)
Q Consensus 245 tY 246 (424)
.-
T Consensus 144 ~~ 145 (200)
T cd04722 144 NG 145 (200)
T ss_pred CC
Confidence 43
No 128
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=41.56 E-value=92 Score=28.38 Aligned_cols=66 Identities=17% Similarity=0.148 Sum_probs=44.3
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEe
Q psy1028 164 ILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSI 243 (424)
Q Consensus 164 i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~v 243 (424)
.+....+.|.|-|-|..|.. ...-.+|+.+|+ .+....+++.+.... -.+.-+.+.+|+|.+
T Consensus 76 ~i~~fa~agad~It~H~E~~-----------~~~~r~i~~Ik~---~G~kaGv~lnP~Tp~----~~i~~~l~~vD~Vll 137 (220)
T COG0036 76 YIEAFAKAGADIITFHAEAT-----------EHIHRTIQLIKE---LGVKAGLVLNPATPL----EALEPVLDDVDLVLL 137 (220)
T ss_pred HHHHHHHhCCCEEEEEeccC-----------cCHHHHHHHHHH---cCCeEEEEECCCCCH----HHHHHHHhhCCEEEE
Confidence 34445566899999999932 123345566655 467777777765441 235667899999999
Q ss_pred eecc
Q psy1028 244 MGYD 247 (424)
Q Consensus 244 mtYD 247 (424)
|+-+
T Consensus 138 MsVn 141 (220)
T COG0036 138 MSVN 141 (220)
T ss_pred EeEC
Confidence 9864
No 129
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=40.93 E-value=1.8e+02 Score=25.59 Aligned_cols=147 Identities=12% Similarity=0.056 Sum_probs=83.1
Q ss_pred hHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccC---hhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCCCC
Q psy1028 193 EKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYD---VPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVT 269 (424)
Q Consensus 193 ~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d---~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~~~ 269 (424)
-..||.-.|+++|+..+....+|.++.-.+.... ..- +.....-+||+-|--|+-.+. - .
T Consensus 34 LGANFPWvIr~i~Ev~p~d~~vSAT~GDvpYKPG-T~slAalGaav~GaDYiKVGLYg~kn~-~-------e-------- 96 (235)
T COG1891 34 LGANFPWVIREIREVVPEDQEVSATVGDVPYKPG-TASLAALGAAVAGADYIKVGLYGTKNE-E-------E-------- 96 (235)
T ss_pred ccCCChHHHHHHHHhCccceeeeeeecCCCCCCc-hHHHHHHHhHhhCCceEEEeecccccH-H-------H--------
Confidence 4578999999999999988999999875443221 122 233345689999988864433 0 0
Q ss_pred CCCCCccccHHHHHHHHHHcCCCCCceEeecccceeeeeecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceE
Q psy1028 270 DQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQ 349 (424)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~ 349 (424)
-+.+-..+...++ -+.++|+++.-. |+-.+...+ ++=-.+.+...+.+..+
T Consensus 97 ------A~e~m~~vvrAVk-d~d~~k~VVAaG-YaDa~Rvgs---------------------v~Pl~~P~vaa~ag~Dv 147 (235)
T COG1891 97 ------ALEVMKNVVRAVK-DFDPSKKVVAAG-YADAHRVGS---------------------VSPLLLPEVAAEAGADV 147 (235)
T ss_pred ------HHHHHHHHHHHHh-ccCCCceEEecc-ccchhhccC---------------------cCccccHHHHHhcCCCE
Confidence 0012222222333 478889888743 333232211 11112222222233221
Q ss_pred EEcCCCeeeEEE-eCCEEEEECCHHHHHHHHHHHHhcCCceE
Q psy1028 350 IFDKNTSVPYAY-RGDQWISFDNEPSLAYKTEYLMSKGLAGA 390 (424)
Q Consensus 350 ~~D~~~~~~y~~-~~~~~i~ydd~~Si~~K~~~a~~~glgGv 390 (424)
..-+ -.. +++..+-|.+.+-+..-.+.++++||-..
T Consensus 148 aMvD-----TaiKDGkslFdfm~~e~l~eFvd~Ah~hGL~~A 184 (235)
T COG1891 148 AMVD-----TAIKDGKSLFDFMDEEELEEFVDLAHEHGLEVA 184 (235)
T ss_pred EEEe-----cccccchhHHhhhcHHHHHHHHHHHHHcchHHH
Confidence 1111 011 25566678999999999999999998543
No 130
>PF14307 Glyco_tran_WbsX: Glycosyltransferase WbsX
Probab=40.90 E-value=56 Score=32.04 Aligned_cols=42 Identities=12% Similarity=0.138 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEeeccCCCCCCccCCCCchhHHHHHHhhh
Q psy1028 370 DNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKYHTSPYPLIKRIKTVLT 420 (424)
Q Consensus 370 dd~~Si~~K~~~a~~~glgGv~iW~l~~Dd~~g~cg~g~~~Ll~a~~~~l~ 420 (424)
.|+++++.++++|+++|+-|+.+|---.+. .+||....+.+.
T Consensus 55 ~~p~v~~~Q~~lA~~~GI~gF~~~~Ywf~g---------k~lLe~p~~~~l 96 (345)
T PF14307_consen 55 RDPEVMEKQAELAKEYGIDGFCFYHYWFNG---------KRLLEKPLENLL 96 (345)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEeeecCC---------chHHHHHHHHHH
Confidence 589999999999999999999999876643 357766655554
No 131
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=40.11 E-value=72 Score=26.49 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhc-CHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVS-TRANRLAFSESILEFLIEHNLDGIDL 178 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~-~~~~r~~fi~~i~~~l~~~gfDGIdi 178 (424)
..++.+.++.++. |+++++-|--- ...|..... +.+.|+.+.+.|...++++||.=+|+
T Consensus 36 ~Dl~l~L~~~k~~-g~~~lfVi~Pv-Ng~wydytG~~~~~r~~~y~kI~~~~~~~gf~v~D~ 95 (130)
T PF04914_consen 36 DDLQLLLDVCKEL-GIDVLFVIQPV-NGKWYDYTGLSKEMRQEYYKKIKYQLKSQGFNVADF 95 (130)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEE-----HHHHHHTT--HHHHHHHHHHHHHHHHTTT--EEE-
T ss_pred HHHHHHHHHHHHc-CCceEEEecCC-cHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEec
Confidence 4566666655555 89998777511 112222222 66899999999999999999966666
No 132
>KOG0622|consensus
Probab=40.06 E-value=1.5e+02 Score=29.62 Aligned_cols=78 Identities=9% Similarity=0.212 Sum_probs=51.9
Q ss_pred HHHHHHHHHhCCCceEEEEEecCC-------CCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchh
Q psy1028 120 YRDVVAMKLLNPNLKVLISVTDAG-------TGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSH 192 (424)
Q Consensus 120 ~~~~~~lk~~n~~~kvllsvg~~~-------~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~ 192 (424)
-.++.++++.+|+.+++|.|-..+ +..|.--+ .=++.+++..+++++.=+-+.++-... ..
T Consensus 154 e~el~kv~~~hP~a~llLrIatdds~a~~~l~~KFG~~~-------~~~~~lLd~ak~l~lnvvGvsfHvGSg----c~- 221 (448)
T KOG0622|consen 154 EEELEKVAKSHPNANLLLRIATDDSTATCRLNLKFGCSL-------DNCRHLLDMAKELELNVVGVSFHVGSG----CT- 221 (448)
T ss_pred HHHHHHHHHhCCCceEEEEEccCCCcccccccCccCCCH-------HHHHHHHHHHHHcCceEEEEEEEecCC----CC-
Confidence 456788899999999999998222 22333211 235667777777776555555543221 33
Q ss_pred hHHHHHHHHHHHHHHcC
Q psy1028 193 EKRMFSKLLQQLKFTLS 209 (424)
Q Consensus 193 ~~~~~~~~l~~Lr~~l~ 209 (424)
+.+.|.+-++..|..|.
T Consensus 222 d~~~y~~Ai~dAr~vfd 238 (448)
T KOG0622|consen 222 DLQAYRDAISDARNVFD 238 (448)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 77899999999999885
No 133
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=39.93 E-value=1.3e+02 Score=29.07 Aligned_cols=31 Identities=19% Similarity=0.197 Sum_probs=23.7
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEeccCC
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLDWEFP 183 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~ 183 (424)
.+++.|+=|.+.+..+ .+.|+||+=+|+-.+
T Consensus 135 tnp~a~~w~~~~~~~~-~~~Gvdg~w~D~~Ep 165 (317)
T cd06598 135 FDPAAQAWFHDNYKKL-IDQGVTGWWGDLGEP 165 (317)
T ss_pred CCHHHHHHHHHHHHHh-hhCCccEEEecCCCc
Confidence 4788887777766554 778999999998543
No 134
>PF07582 AP_endonuc_2_N: AP endonuclease family 2 C terminus; InterPro: IPR011418 DNA damaging agents such as the anti-tumour drugs bleomycin and neocarzinostatin or those that generate oxygen radicals produce a variety of lesions in DNA. Amongst these is base-loss which forms apurinic/apyrimidinic (AP) sites or strand breaks with atypical 3' termini. DNA repair at the AP sites is initiated by specific endonuclease cleavage of the phosphodiester backbone. Such endonucleases are also generally capable of removing blocking groups from the 3' terminus of DNA strand breaks. AP endonucleases can be classified into two families based on sequence similarity []. This entry represents a highly-conserved sequence found at the C terminus of several apurinic/apyrimidinic (AP) endonucleases in a range of Gram-positive and Gram-negative bacteria. ; PDB: 3LMZ_A 2ZDS_D.
Probab=37.56 E-value=82 Score=21.89 Aligned_cols=41 Identities=20% Similarity=0.122 Sum_probs=22.4
Q ss_pred HHHHHHHHcCCCCEE-EEeccCCCCCCCCchhhHHHHHHHHHHHHHHc
Q psy1028 162 ESILEFLIEHNLDGI-DLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTL 208 (424)
Q Consensus 162 ~~i~~~l~~~gfDGI-diDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l 208 (424)
+.+++.|++.||||. .|-||-... + ..+.+..-++-||..+
T Consensus 3 ~~i~~~L~~~GYdG~~siE~ED~~~-----~-~~~G~~~a~~~lr~~l 44 (55)
T PF07582_consen 3 KRIFSALREIGYDGWLSIEHEDALM-----D-PEEGAREAAAFLRKLL 44 (55)
T ss_dssp HHHHHHHHHTT--SEEEE---STTT-----S-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHcCCCceEEEEeecCCC-----C-HHHHHHHHHHHHHHhc
Confidence 357888999999994 567886643 2 3455655566565544
No 135
>PRK09505 malS alpha-amylase; Reviewed
Probab=37.40 E-value=80 Score=34.14 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=25.2
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy1028 153 TRANRLAFSESILEFLIEHNLDGIDLDWE 181 (424)
Q Consensus 153 ~~~~r~~fi~~i~~~l~~~gfDGIdiDwE 181 (424)
+++.|+.+++-+..||+++|+||+-||--
T Consensus 435 n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaa 463 (683)
T PRK09505 435 GYTPRDYLTHWLSQWVRDYGIDGFRVDTA 463 (683)
T ss_pred CHHHHHHHHHHHHHHHHhcCCCEEEEech
Confidence 45788889998999999999999999953
No 136
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=37.08 E-value=4.1e+02 Score=25.98 Aligned_cols=89 Identities=10% Similarity=0.018 Sum_probs=51.7
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c--CCCCCchhhhcC--------HH-----HHHHHHHHHHHHHHcCCCCEEEEecc
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D--AGTGNFAKAVST--------RA-----NRLAFSESILEFLIEHNLDGIDLDWE 181 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~--~~~~~~~~~~~~--------~~-----~r~~fi~~i~~~l~~~gfDGIdiDwE 181 (424)
...+++.+..+++ |+|+.+-.. + .... +..-... +. ..+....+|.+++.+|..|.|=+|.-
T Consensus 138 Div~El~~A~rk~-Glk~G~Y~S~~dw~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~ 215 (346)
T PF01120_consen 138 DIVGELADACRKY-GLKFGLYYSPWDWHHPD-YPPDEEGDENGPADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGG 215 (346)
T ss_dssp -HHHHHHHHHHHT-T-EEEEEEESSSCCCTT-TTSSCHCHHCC--HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEEST
T ss_pred CHHHHHHHHHHHc-CCeEEEEecchHhcCcc-cCCCccCCcccccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCC
Confidence 4667777766665 999998888 2 2211 1111111 11 12255679999999999999999977
Q ss_pred CCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEE
Q psy1028 182 FPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMT 215 (424)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls 215 (424)
.+.. . +...+..+.+.+|+.- ++.++.
T Consensus 216 ~~~~-----~-~~~~~~~~~~~i~~~q-p~~ii~ 242 (346)
T PF01120_consen 216 WPDP-----D-EDWDSAELYNWIRKLQ-PDVIIN 242 (346)
T ss_dssp TSCC-----C-THHHHHHHHHHHHHHS-TTSEEE
T ss_pred CCcc-----c-cccCHHHHHHHHHHhC-CeEEEe
Confidence 6532 1 3444566666666554 444443
No 137
>cd06522 GH25_AtlA-like AtlA is an autolysin found in Gram-positive lactic acid bacteria that degrades bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues. This family includes the AtlA and Aml autolysins from Streptococcus mutans which have a C-terminal glycosyl hydrolase family 25 (GH25) catalytic domain as well as six tandem N-terminal repeats of the GBS (group B Streptococcus) Bsp-like peptidoglycan-binding domain. Other members of this family have one or more C-terminal peptidoglycan-binding domain(s) (SH3 or LysM) in addition to the GH25 domain.
Probab=37.01 E-value=2.9e+02 Score=24.30 Aligned_cols=44 Identities=11% Similarity=-0.028 Sum_probs=27.4
Q ss_pred HHHHHHHHHcCCCC---EEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHc
Q psy1028 161 SESILEFLIEHNLD---GIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTL 208 (424)
Q Consensus 161 i~~i~~~l~~~gfD---GIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l 208 (424)
++..++.+++++++ -+-||+|.... ..+ -......|+++++++-
T Consensus 76 A~~f~~~~~~~~~~~~~~~~lD~E~~~~---~~~-~~~~~~~F~~~v~~~g 122 (192)
T cd06522 76 ARYFANTAKSLGLSKNTVMVADMEDSSS---SGN-ATANVNAFWQTMKAAG 122 (192)
T ss_pred HHHHHHHHHHcCCCCCCceEEEeecCCC---cch-HHHHHHHHHHHHHHcC
Confidence 33444455666654 36789998643 123 4466678888888753
No 138
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=35.90 E-value=62 Score=30.28 Aligned_cols=48 Identities=25% Similarity=0.076 Sum_probs=32.8
Q ss_pred HHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 163 SILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 163 ~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
.+++++..-|||.|-||.|+... +.+.+..+++.++. .+...-+.+|.
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~~-------~~~~~~~~i~a~~~---~g~~~lVRvp~ 78 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAPN-------DVSTFIPQLMALKG---SASAPVVRVPT 78 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCCC-------CHHHHHHHHHHHhh---cCCCcEEECCC
Confidence 35667778899999999999754 56666666665544 44445555654
No 139
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=35.88 E-value=1.7e+02 Score=25.40 Aligned_cols=69 Identities=12% Similarity=0.050 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHc----------------CCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEE
Q psy1028 154 RANRLAFSESILEFLIE----------------HNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVA 217 (424)
Q Consensus 154 ~~~r~~fi~~i~~~l~~----------------~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~a 217 (424)
.....++++.+.+++++ .++|||.|..+... ..+.|..++++..|+++
T Consensus 38 ~~~~~~~a~~l~~~~~~~~~~liin~~~~la~~~~~dGvHl~~~~~~----------------~~~~r~~~~~~~~ig~S 101 (180)
T PF02581_consen 38 DEELLELARRLAELCQKYGVPLIINDRVDLALELGADGVHLGQSDLP----------------PAEARKLLGPDKIIGAS 101 (180)
T ss_dssp HHHHHHHHHHHHHHHHHTTGCEEEES-HHHHHHCT-SEEEEBTTSSS----------------HHHHHHHHTTTSEEEEE
T ss_pred ccHHHHHHHHHHHHhhcceEEEEecCCHHHHHhcCCCEEEecccccc----------------hHHhhhhcccceEEEee
Confidence 34555666666666654 56999999886541 24556667788899988
Q ss_pred ecCCccccccccChhhhh-ccccEEEeee
Q psy1028 218 VAAPGPIIDRAYDVPLMG-RLVDFVSIMG 245 (424)
Q Consensus 218 v~~~~~~~~~~~d~~~l~-~~vD~v~vmt 245 (424)
+....+ ...+. ..+||+.+-.
T Consensus 102 ~h~~~e-------~~~a~~~g~dYv~~gp 123 (180)
T PF02581_consen 102 CHSLEE-------AREAEELGADYVFLGP 123 (180)
T ss_dssp ESSHHH-------HHHHHHCTTSEEEEET
T ss_pred cCcHHH-------HHHhhhcCCCEEEECC
Confidence 875322 23333 4679997664
No 140
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=35.44 E-value=3.9e+02 Score=25.42 Aligned_cols=80 Identities=10% Similarity=0.130 Sum_probs=44.5
Q ss_pred EEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccC--CCCCCCCchhhHHHHHHHHHHHHHHcCCCcE
Q psy1028 136 LISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF--PGWPGPNKSHEKRMFSKLLQQLKFTLSGRFL 213 (424)
Q Consensus 136 llsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~--~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ 213 (424)
++.|-+-.++.|+.--.. ...+..++.+.++++ .|.|=|||--|. |+....+++.+.+.+...|+.|++.+ +..
T Consensus 17 imGIlNvTpDSFsdgg~~-~~~~~a~~~a~~~~~-~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~--~~~ 92 (282)
T PRK11613 17 VMGILNVTPDSFSDGGTH-NSLIDAVKHANLMIN-AGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF--EVW 92 (282)
T ss_pred EEEEEcCCCCCCCCCCCC-CCHHHHHHHHHHHHH-CCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCe
Confidence 334434444555442211 133455666666664 489999998875 33222222224556777888888765 455
Q ss_pred EEEEec
Q psy1028 214 MTVAVA 219 (424)
Q Consensus 214 ls~av~ 219 (424)
||+...
T Consensus 93 ISIDT~ 98 (282)
T PRK11613 93 ISVDTS 98 (282)
T ss_pred EEEECC
Confidence 666544
No 141
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=35.24 E-value=68 Score=30.27 Aligned_cols=47 Identities=13% Similarity=-0.029 Sum_probs=32.2
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 164 ILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 164 i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
+++++..-|||.|-||.|+-.. +.+.+..+++.++. .+...-+.+|.
T Consensus 31 ~~E~~a~~GfD~v~iD~EHg~~-------~~~~l~~~i~a~~~---~g~~~lVRvp~ 77 (267)
T PRK10128 31 MAEIAATSGYDWLLIDGEHAPN-------TIQDLYHQLQAIAP---YASQPVIRPVE 77 (267)
T ss_pred HHHHHHHcCCCEEEEccccCCC-------CHHHHHHHHHHHHh---cCCCeEEECCC
Confidence 4566778899999999999754 56666666666653 44444455554
No 142
>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.
Probab=34.40 E-value=1.3e+02 Score=28.07 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=18.7
Q ss_pred HHHHHHHHHcCCCCEEEEeccCC
Q psy1028 161 SESILEFLIEHNLDGIDLDWEFP 183 (424)
Q Consensus 161 i~~i~~~l~~~gfDGIdiDwE~~ 183 (424)
....++++++.|||||+|....+
T Consensus 12 l~~~l~~a~~~G~d~vEl~~~~~ 34 (279)
T cd00019 12 LENALKRAKEIGFDTVAMFLGNP 34 (279)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCC
Confidence 45678899999999999987554
No 143
>PLN02334 ribulose-phosphate 3-epimerase
Probab=34.19 E-value=1.9e+02 Score=26.32 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=41.3
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhcc--ccEE
Q psy1028 164 ILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRL--VDFV 241 (424)
Q Consensus 164 i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~--vD~v 241 (424)
.++.+.+.|.|||-+..|. . ........++.++. .++.+.+++.+... .-....+.+. +|++
T Consensus 80 ~~~~~~~~gad~v~vH~~q-~--------~~d~~~~~~~~i~~---~g~~iGls~~~~t~----~~~~~~~~~~~~~Dyi 143 (229)
T PLN02334 80 YVPDFAKAGASIFTFHIEQ-A--------STIHLHRLIQQIKS---AGMKAGVVLNPGTP----VEAVEPVVEKGLVDMV 143 (229)
T ss_pred HHHHHHHcCCCEEEEeecc-c--------cchhHHHHHHHHHH---CCCeEEEEECCCCC----HHHHHHHHhccCCCEE
Confidence 3445567799999998884 1 01123344444443 66777777754221 1123456677 9999
Q ss_pred Eeeecc
Q psy1028 242 SIMGYD 247 (424)
Q Consensus 242 ~vmtYD 247 (424)
.+|+..
T Consensus 144 ~~~~v~ 149 (229)
T PLN02334 144 LVMSVE 149 (229)
T ss_pred EEEEEe
Confidence 999874
No 144
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.57 E-value=2.5e+02 Score=26.65 Aligned_cols=57 Identities=9% Similarity=0.080 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC-CCcEEEEEecC
Q psy1028 156 NRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-GRFLMTVAVAA 220 (424)
Q Consensus 156 ~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls~av~~ 220 (424)
.-..+++.-..++++.|++...+.+.... ..+.+..+|++|++.=. .++.+++-+|.
T Consensus 46 ~s~~Y~~~~~~~~~~~Gi~~~~~~l~~~~--------~~~~l~~~i~~Ln~d~~v~Gi~VqlPlp~ 103 (283)
T PRK14192 46 ASATYVRMKGNACRRVGMDSLKVELPQET--------TTEQLLAKIEELNANPDVHGILLQHPVPA 103 (283)
T ss_pred hHHHHHHHHHHHHHHcCCeEEEEECCCCC--------CHHHHHHHHHHHhCCCCCCEEEEeCCCcc
Confidence 34578899999999999999998884321 34568889999976533 67777765554
No 145
>TIGR00742 yjbN tRNA dihydrouridine synthase A. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=32.74 E-value=1.6e+02 Score=28.48 Aligned_cols=74 Identities=8% Similarity=0.140 Sum_probs=45.2
Q ss_pred CCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCC------CCC-chhhHHHHHHHHHH
Q psy1028 131 PNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWP------GPN-KSHEKRMFSKLLQQ 203 (424)
Q Consensus 131 ~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~------~~~-~~~~~~~~~~~l~~ 203 (424)
....+++.|++.+.+ .|+ ..+..+.++|||+|||+.--|... |.. .. +.+...++++.
T Consensus 53 ~e~p~~vQl~g~~p~-------------~~~-~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~-~p~~~~~iv~a 117 (318)
T TIGR00742 53 EESPVALQLGGSDPN-------------DLA-KCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMG-NADLVADCVKA 117 (318)
T ss_pred CCCcEEEEEccCCHH-------------HHH-HHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhc-CHHHHHHHHHH
Confidence 356677777643322 223 234456678999999999766432 111 23 66778889999
Q ss_pred HHHHcCCCcEEEEEec
Q psy1028 204 LKFTLSGRFLMTVAVA 219 (424)
Q Consensus 204 Lr~~l~~~~~ls~av~ 219 (424)
++++++....+-+.+.
T Consensus 118 v~~~~~~PVsvKiR~g 133 (318)
T TIGR00742 118 MQEAVNIPVTVKHRIG 133 (318)
T ss_pred HHHHhCCCeEEEEecC
Confidence 9998854444444333
No 146
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=32.57 E-value=80 Score=29.43 Aligned_cols=48 Identities=23% Similarity=-0.010 Sum_probs=32.3
Q ss_pred HHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 163 SILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 163 ~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
.+.+++..-|||.|-||.|+... +.+.+..+++.++. .+...-+.+|.
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~-------~~~~~~~~~~a~~~---~g~~~~VRvp~ 71 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPN-------DVLTFIPQLMALKG---SASAPVVRPPW 71 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCC-------CHHHHHHHHHHHhh---cCCCcEEECCC
Confidence 35566778899999999999754 55566666655443 45555556654
No 147
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=32.13 E-value=73 Score=29.57 Aligned_cols=46 Identities=22% Similarity=0.326 Sum_probs=34.6
Q ss_pred CchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEeeecc
Q psy1028 189 NKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYD 247 (424)
Q Consensus 189 ~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD 247 (424)
+++ +...+..+|++||+..+- |+-+ -..|++.+.+++|+|.||.|-
T Consensus 181 n~~-e~~~l~~~i~~i~~~~g~----till--------IEHdM~~Vm~l~dri~Vl~~G 226 (250)
T COG0411 181 NPE-ETEELAELIRELRDRGGV----TILL--------IEHDMKLVMGLADRIVVLNYG 226 (250)
T ss_pred CHH-HHHHHHHHHHHHHhcCCc----EEEE--------EEeccHHHhhhccEEEeccCC
Confidence 466 888999999999986532 2222 146788899999999999884
No 148
>PF05763 DUF835: Protein of unknown function (DUF835); InterPro: IPR008553 The members of this archaebacterial protein entry are around 250-300 amino acid residues in length. The function of these proteins is not known.
Probab=31.50 E-value=1.4e+02 Score=24.94 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=47.3
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEe-ccCCCCCCCCchhhHHHHHHHHHHHHHHcC-CCcEEEEEecC
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLD-WEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-GRFLMTVAVAA 220 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiD-wE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls~av~~ 220 (424)
=+|..-....+.+++++++.+-.-|-|| .||..- .. +-+...+||..||...- ++-.|-+.+..
T Consensus 55 I~Pt~L~~l~~~i~~fl~~~~~~vViiD~lEYL~l----~N-gF~~v~KFL~~LkD~~~~~~~~lIl~~~~ 120 (136)
T PF05763_consen 55 ISPTNLHKLLDTIVRFLKENGNGVVIIDGLEYLIL----EN-GFESVLKFLASLKDYALLNNGTLILVVDP 120 (136)
T ss_pred cCchhhHHHHHHHHHHHHhCCCcEEEEecHHHHHH----Hc-CHHHHHHHHHHhHHHeeccCCEEEEEECh
Confidence 3567778899999999999665677888 788753 22 67788899999997765 44455555543
No 149
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=31.25 E-value=3e+02 Score=26.30 Aligned_cols=30 Identities=13% Similarity=0.187 Sum_probs=20.4
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEeccC
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLDWEF 182 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~ 182 (424)
.+++.|+=+.+ .++-+.++|+||+-+|+-.
T Consensus 130 tnp~a~~w~~~-~~~~~~~~Gid~~~~D~~e 159 (308)
T cd06593 130 TNPDACKWYKD-KLKPLLDMGVDCFKTDFGE 159 (308)
T ss_pred CCHHHHHHHHH-HHHHHHHhCCcEEecCCCC
Confidence 56677755544 4445566899999999743
No 150
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 30 GH30 from CAZY comprises enzymes with only one known activity; glucosylceramidase (3.2.1.45 from EC). Family 30 encompasses the mammalian glucosylceramidases. Human acid beta-glucosidase (D-glucosyl-N-acylsphingosine glucohydrolase), cleaves the glucosidic bonds of glucosylceramide and synthetic beta-glucosides []. Any one of over 50 different mutations in the gene of glucocerebrosidase have been found to affect activity of this hydrolase, producing variants of Gaucher disease, the most prevalent lysosomal storage disease [, ].; GO: 0004348 glucosylceramidase activity, 0006665 sphingolipid metabolic process, 0007040 lysosome organization, 0005764 lysosome; PDB: 2VT0_B 1NOF_A 2Y24_A 2WCG_B 2J25_A 3GXM_D 1Y7V_B 2NT0_C 3GXF_C 3GXD_A ....
Probab=31.23 E-value=2.2e+02 Score=29.53 Aligned_cols=129 Identities=16% Similarity=0.140 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhCCCceEEEEEe----cC-CCCCch--hhhc---CHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCC
Q psy1028 119 YYRDVVAMKLLNPNLKVLISVT----DA-GTGNFA--KAVS---TRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGP 188 (424)
Q Consensus 119 ~~~~~~~lk~~n~~~kvllsvg----~~-~~~~~~--~~~~---~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~ 188 (424)
.+..++++++.+|++||+.|-= |. ....+. ..+. .++..+.+++=+++|++.|.=-||+|+-=.+.....
T Consensus 155 ~ip~ik~a~~~~~~lki~aSpWSpP~WMKtn~~~~g~g~l~g~~~~~y~~~yA~Y~vkfi~aY~~~GI~i~aiT~QNEP~ 234 (496)
T PF02055_consen 155 KIPLIKEALAINPNLKIFASPWSPPAWMKTNGSMNGGGSLKGSLGDEYYQAYADYFVKFIQAYKKEGIPIWAITPQNEPD 234 (496)
T ss_dssp HHHHHHHHHHHHTT-EEEEEES---GGGBTTSSSCSS-BBSCGTTSHHHHHHHHHHHHHHHHHHCTT--ESEEESSSSCC
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCHHHccCCcCcCCCccCCCCCchhHHHHHHHHHHHHHHHHHCCCCeEEEeccCCCC
Confidence 3566777777888999999886 21 111110 1121 246788999999999999988899887533322110
Q ss_pred -------C-ch--hhHHHHHHHHHH-HHHHcC-C----CcEE-EEEecCC--ccccccccChhhhhccccEEEeeecc
Q psy1028 189 -------N-KS--HEKRMFSKLLQQ-LKFTLS-G----RFLM-TVAVAAP--GPIIDRAYDVPLMGRLVDFVSIMGYD 247 (424)
Q Consensus 189 -------~-~~--~~~~~~~~~l~~-Lr~~l~-~----~~~l-s~av~~~--~~~~~~~~d~~~l~~~vD~v~vmtYD 247 (424)
. +. -..+....||+. |+-+|+ . +..| ...=... +.....-+.=++..+++|-+-+.-|.
T Consensus 235 ~~~~~~~~~~s~~~t~~~~~~Fi~~~LgP~l~~~~~g~d~kI~~~D~n~~~~~~~~~~il~d~~A~~yv~GiA~HwY~ 312 (496)
T PF02055_consen 235 NGSDPNYPWPSMGWTPEEQADFIKNYLGPALRKAGLGKDVKILIYDHNRDNLPDYADTILNDPEAAKYVDGIAFHWYG 312 (496)
T ss_dssp GGGSTT-SSC--B--HHHHHHHHHHTHHHHHHTSTT-TTSEEEEEEEEGGGTTHHHHHHHTSHHHHTTEEEEEEEETT
T ss_pred CCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEEEecCCcccchhhhhhhcChhhHhheeEEEEECCC
Confidence 0 00 034566788886 888887 2 2223 3221110 00000111223456688888888773
No 151
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=31.21 E-value=1.6e+02 Score=28.45 Aligned_cols=31 Identities=29% Similarity=0.344 Sum_probs=26.1
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEeccC
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLDWEF 182 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~ 182 (424)
.+++.|+=+.+.+.+++.++|+||+=+|+-.
T Consensus 136 tnp~a~~ww~~~~~~~~~~~Gvdg~w~D~~E 166 (317)
T cd06594 136 TNPAARDWFKQVIKEMLLDLGLSGWMADFGE 166 (317)
T ss_pred CCHHHHHHHHHHHHHHhhhcCCcEEEecCCC
Confidence 4578888899999998888999999999843
No 152
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=30.59 E-value=1.4e+02 Score=29.20 Aligned_cols=64 Identities=16% Similarity=0.224 Sum_probs=41.1
Q ss_pred CceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCC------CCCchhhHHHHHHHHHHHH
Q psy1028 132 NLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWP------GPNKSHEKRMFSKLLQQLK 205 (424)
Q Consensus 132 ~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~------~~~~~~~~~~~~~~l~~Lr 205 (424)
...+.+.|++.+.+ .|++ .+..+++.|||||||+.--|... |+....+.+...++++.+|
T Consensus 64 e~p~~vQl~g~~p~-------------~~~~-aA~~~~~~g~d~IdlN~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr 129 (333)
T PRK11815 64 EHPVALQLGGSDPA-------------DLAE-AAKLAEDWGYDEINLNVGCPSDRVQNGRFGACLMAEPELVADCVKAMK 129 (333)
T ss_pred CCcEEEEEeCCCHH-------------HHHH-HHHHHHhcCCCEEEEcCCCCHHHccCCCeeeHHhcCHHHHHHHHHHHH
Confidence 56788888743322 3333 34566778999999998766431 1122225667778889999
Q ss_pred HHcC
Q psy1028 206 FTLS 209 (424)
Q Consensus 206 ~~l~ 209 (424)
+++.
T Consensus 130 ~~v~ 133 (333)
T PRK11815 130 DAVS 133 (333)
T ss_pred HHcC
Confidence 8875
No 153
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=30.58 E-value=4.4e+02 Score=24.34 Aligned_cols=82 Identities=17% Similarity=0.173 Sum_probs=45.5
Q ss_pred HHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCC-CCEEEEeccCCCCCCCCchhhHHHHH
Q psy1028 120 YRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHN-LDGIDLDWEFPGWPGPNKSHEKRMFS 198 (424)
Q Consensus 120 ~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~g-fDGIdiDwE~~~~~~~~~~~~~~~~~ 198 (424)
...+...|+..|++|+++. ..+ +.....+++.+.+-+..+.+... +|||-|-+-.... .. +.+.+.
T Consensus 106 ~~af~~ar~~~P~a~l~~N--dy~------~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~~----~~-~~~~~~ 172 (254)
T smart00633 106 EKAFRYAREADPDAKLFYN--DYN------TEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSLG----SP-NIAEIR 172 (254)
T ss_pred HHHHHHHHHhCCCCEEEEe--ccC------CcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecCC----CC-CHHHHH
Confidence 3455667777899888874 111 11112455555555555555543 8999985422111 11 345677
Q ss_pred HHHHHHHHHcCCCcEEE
Q psy1028 199 KLLQQLKFTLSGRFLMT 215 (424)
Q Consensus 199 ~~l~~Lr~~l~~~~~ls 215 (424)
.+|+++.+ ++....||
T Consensus 173 ~~l~~~~~-~g~pi~iT 188 (254)
T smart00633 173 AALDRFAS-LGLEIQIT 188 (254)
T ss_pred HHHHHHHH-cCCceEEE
Confidence 88888865 34554444
No 154
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=30.16 E-value=1.7e+02 Score=27.79 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=41.8
Q ss_pred HHHHHHHHhCCCceEEEEEe-c--CC--CCCchh-----------------hhcCHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy1028 121 RDVVAMKLLNPNLKVLISVT-D--AG--TGNFAK-----------------AVSTRANRLAFSESILEFLIEHNLDGIDL 178 (424)
Q Consensus 121 ~~~~~lk~~n~~~kvllsvg-~--~~--~~~~~~-----------------~~~~~~~r~~fi~~i~~~l~~~gfDGIdi 178 (424)
+.+.+|+++ |+|+++.|- . .. ...+.. -+.+++.++-|.+.+.+.+.+.|+||+=+
T Consensus 78 ~mi~~Lh~~--G~k~v~~v~P~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~D~tnp~a~~~w~~~~~~~~~~~Gidg~W~ 155 (292)
T cd06595 78 KLLQDLHDR--GLKVTLNLHPADGIRAHEDQYPEMAKALGVDPATEGPILFDLTNPKFMDAYFDNVHRPLEKQGVDFWWL 155 (292)
T ss_pred HHHHHHHHC--CCEEEEEeCCCcccCCCcHHHHHHHHhcCCCcccCCeEEecCCCHHHHHHHHHHHHHHHHhcCCcEEEe
Confidence 334556665 899999886 1 11 111111 13567888889999999999999999999
Q ss_pred eccCC
Q psy1028 179 DWEFP 183 (424)
Q Consensus 179 DwE~~ 183 (424)
|+-.+
T Consensus 156 D~~E~ 160 (292)
T cd06595 156 DWQQG 160 (292)
T ss_pred cCCCC
Confidence 98443
No 155
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=29.87 E-value=3.2e+02 Score=27.31 Aligned_cols=83 Identities=10% Similarity=-0.077 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe---cCCCCCchh-------hhcCHHHHHH---HHHHHHHHHHcCCCCEEEEeccCCC
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT---DAGTGNFAK-------AVSTRANRLA---FSESILEFLIEHNLDGIDLDWEFPG 184 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg---~~~~~~~~~-------~~~~~~~r~~---fi~~i~~~l~~~gfDGIdiDwE~~~ 184 (424)
...+++.+..++. |+|+-+-.. |.... +.. -...+...+- +..+|.++|.+||-|.+=+|+..+.
T Consensus 128 Div~el~~A~rk~-Glk~G~Y~S~~DW~~p~-y~~~~~~~~~~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~~~~ 205 (384)
T smart00812 128 DLVGELADAVRKR-GLKFGLYHSLFDWFNPL-YAGPTSSDEDPDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGGWEA 205 (384)
T ss_pred chHHHHHHHHHHc-CCeEEEEcCHHHhCCCc-cccccccccccccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCCCCC
Confidence 4666777765555 999999877 33222 211 0111222222 2689999999999999999987653
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHc
Q psy1028 185 WPGPNKSHEKRMFSKLLQQLKFTL 208 (424)
Q Consensus 185 ~~~~~~~~~~~~~~~~l~~Lr~~l 208 (424)
. . ..-....|++.+|+.-
T Consensus 206 ~-----~-~~~~~~~l~~~~~~~q 223 (384)
T smart00812 206 P-----D-DYWRSKEFLAWLYNLS 223 (384)
T ss_pred c-----c-chhcHHHHHHHHHHhC
Confidence 2 1 2223445555555543
No 156
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=29.70 E-value=1.4e+02 Score=27.77 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=32.4
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEE
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTV 216 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~ 216 (424)
.++..|+.+++ ++.+..++++||+-||--... ....+..+.+++++.. ++..+..
T Consensus 142 ~n~~v~~~i~~-~~~~w~~~giDGfR~D~~~~~--------~~~~~~~~~~~~~~~~-~~~~~i~ 196 (316)
T PF00128_consen 142 ENPEVREYIID-VLKFWIEEGIDGFRLDAAKHI--------PKEFWKEFRDEVKEEK-PDFFLIG 196 (316)
T ss_dssp TSHHHHHHHHH-HHHHHHHTTESEEEETTGGGS--------SHHHHHHHHHHHHHHH-TTSEEEE
T ss_pred hhhhhhhhhcc-cccchhhceEeEEEEcccccc--------chhhHHHHhhhhhhhc-cccceee
Confidence 45666777777 666666677999999975432 3344444555555444 3443333
No 157
>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type. This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.
Probab=29.67 E-value=1.3e+02 Score=29.91 Aligned_cols=69 Identities=14% Similarity=0.128 Sum_probs=37.9
Q ss_pred cCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccC--CCCCCCCchhhHHHHHHHHHHHHHHcC-CCcEEEEE
Q psy1028 141 DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF--PGWPGPNKSHEKRMFSKLLQQLKFTLS-GRFLMTVA 217 (424)
Q Consensus 141 ~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~--~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls~a 217 (424)
|.+.+.|....+..- . ....++-+.+.|||||+|.... |.. . ....-..-+++|++.+. .++.+++.
T Consensus 18 ~~~~~~~g~~~~~~~---~-~~e~i~~la~~GfdgVE~~~~dl~P~~---~---~~~e~~~~~~~lk~~L~~~GL~v~~v 87 (382)
T TIGR02631 18 WVGRDPFGDATRTAL---D-PVEAVHKLAELGAYGVTFHDDDLIPFG---A---PPQERDQIVRRFKKALDETGLKVPMV 87 (382)
T ss_pred CCCCCCCCCCCCCCc---C-HHHHHHHHHHhCCCEEEecccccCCCC---C---ChhHHHHHHHHHHHHHHHhCCeEEEe
Confidence 455566655443221 1 1244555888999999997432 211 0 11111234677777777 77776654
Q ss_pred ec
Q psy1028 218 VA 219 (424)
Q Consensus 218 v~ 219 (424)
.+
T Consensus 88 ~~ 89 (382)
T TIGR02631 88 TT 89 (382)
T ss_pred ec
Confidence 43
No 158
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=29.60 E-value=3.3e+02 Score=26.67 Aligned_cols=54 Identities=17% Similarity=0.095 Sum_probs=38.7
Q ss_pred CceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcC-CCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC
Q psy1028 132 NLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEH-NLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS 209 (424)
Q Consensus 132 ~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~-gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~ 209 (424)
+..+++|||-.. .-.+.+..+++.. +.|-|.||--+- +.....++|+.||+.++
T Consensus 95 ~~~~~vsvG~~~---------------~d~er~~~L~~a~~~~d~iviD~AhG---------hs~~~i~~ik~ir~~~p 149 (343)
T TIGR01305 95 LQNVAVSSGSSD---------------NDLEKMTSILEAVPQLKFICLDVANG---------YSEHFVEFVKLVREAFP 149 (343)
T ss_pred cceEEEEeccCH---------------HHHHHHHHHHhcCCCCCEEEEECCCC---------cHHHHHHHHHHHHhhCC
Confidence 567788888211 1123344455543 799999999886 66899999999999985
No 159
>COG3410 Uncharacterized conserved protein [Function unknown]
Probab=29.58 E-value=1.2e+02 Score=26.26 Aligned_cols=46 Identities=11% Similarity=0.188 Sum_probs=35.7
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHH
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLK 205 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr 205 (424)
++++..++.+.+-+..|.+-|..|++|-+|-| + -.+.+..+.+..|
T Consensus 145 k~~eik~kiIkNsinvlmtRGIrGlyiyaeDp-------e-lrerl~~l~~~~r 190 (191)
T COG3410 145 KNQEIKEKIIKNSINVLMTRGIRGLYIYAEDP-------E-LRERLVELKRGKR 190 (191)
T ss_pred hCHHHHHHHHHHHHHHHHhcccceEEEEEeCH-------H-HHHHHHHHHhhhc
Confidence 45678889999999999999999999999976 2 4555555555443
No 160
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=28.99 E-value=91 Score=28.72 Aligned_cols=21 Identities=5% Similarity=0.077 Sum_probs=17.5
Q ss_pred HHHHHHHHHcCCCCEEEEecc
Q psy1028 161 SESILEFLIEHNLDGIDLDWE 181 (424)
Q Consensus 161 i~~i~~~l~~~gfDGIdiDwE 181 (424)
+...++.+++.|||||+|.+.
T Consensus 16 l~e~~~~~~e~G~~~vEl~~~ 36 (254)
T TIGR03234 16 FLERFAAAAQAGFTGVEYLFP 36 (254)
T ss_pred HHHHHHHHHHcCCCEEEecCC
Confidence 566788889999999999763
No 161
>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.
Probab=28.90 E-value=1.4e+02 Score=28.72 Aligned_cols=104 Identities=12% Similarity=0.211 Sum_probs=50.8
Q ss_pred HHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCC----C-C--CchhhHHHHH
Q psy1028 126 MKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWP----G-P--NKSHEKRMFS 198 (424)
Q Consensus 126 lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~----~-~--~~~~~~~~~~ 198 (424)
+.......++++-|++.+ ++ .....+..+.+.++|||||+.-=|... | | =-. +.+...
T Consensus 47 ~~~~~~~~p~~~Ql~g~~----------~~----~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~-~p~~~~ 111 (309)
T PF01207_consen 47 LPFLPNERPLIVQLFGND----------PE----DLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLK-DPDLLA 111 (309)
T ss_dssp S-GCC-T-TEEEEEE-S-----------HH----HHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC--HHHHH
T ss_pred ccccccccceeEEEeecc----------HH----HHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhc-ChHHhh
Confidence 333333457888887432 22 233345567779999999998766421 1 1 123 678899
Q ss_pred HHHHHHHHHcCCCcEEEEEecCCccccccccChh-hhhc-cccEEEeee
Q psy1028 199 KLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVP-LMGR-LVDFVSIMG 245 (424)
Q Consensus 199 ~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~-~l~~-~vD~v~vmt 245 (424)
.+|+.+++.++....+-+.+....... ...++. .+.+ -+|.+.|..
T Consensus 112 ~iv~~~~~~~~~pvsvKiR~g~~~~~~-~~~~~~~~l~~~G~~~i~vH~ 159 (309)
T PF01207_consen 112 EIVKAVRKAVPIPVSVKIRLGWDDSPE-ETIEFARILEDAGVSAITVHG 159 (309)
T ss_dssp HHHHHHHHH-SSEEEEEEESECT--CH-HHHHHHHHHHHTT--EEEEEC
T ss_pred HHHHhhhcccccceEEecccccccchh-HHHHHHHHhhhcccceEEEec
Confidence 999999999864444444444331111 112222 2222 378888764
No 162
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=28.85 E-value=3.4e+02 Score=23.41 Aligned_cols=107 Identities=12% Similarity=0.188 Sum_probs=69.1
Q ss_pred HHHHHHHHhCCCceEEEEEec-CCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCC-----CCchhhH
Q psy1028 121 RDVVAMKLLNPNLKVLISVTD-AGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPG-----PNKSHEK 194 (424)
Q Consensus 121 ~~~~~lk~~n~~~kvllsvg~-~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~-----~~~~~~~ 194 (424)
..+..|+.. |++|+-.|-. .-...+ .++...||=|-+++-+.+... .... .+
T Consensus 44 ~nl~~L~~~--g~~V~~~VDat~l~~~~-------------------~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~-nr 101 (166)
T PF10354_consen 44 ENLEELREL--GVTVLHGVDATKLHKHF-------------------RLKNQRFDRIIFNFPHVGGGSEDGKRNIRL-NR 101 (166)
T ss_pred HHHHHHhhc--CCccccCCCCCcccccc-------------------cccCCcCCEEEEeCCCCCCCccchhHHHHH-HH
Confidence 445566444 8888877762 111111 345567999999999987210 0112 45
Q ss_pred HHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEeeecccCCC
Q psy1028 195 RMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSY 251 (424)
Q Consensus 195 ~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~~~ 251 (424)
..+..|++..+..|..+=.|-|++-....+ ..+++.++++..-++.+...++...
T Consensus 102 ~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py--~~W~i~~lA~~~gl~l~~~~~F~~~ 156 (166)
T PF10354_consen 102 ELLRGFFKSASQLLKPDGEIHVTLKDGQPY--DSWNIEELAAEAGLVLVRKVPFDPS 156 (166)
T ss_pred HHHHHHHHHHHHhcCCCCEEEEEeCCCCCC--ccccHHHHHHhcCCEEEEEecCCHH
Confidence 667788888888888544455554443332 2578899999999999999888755
No 163
>PF07999 RHSP: Retrotransposon hot spot protein; InterPro: IPR006518 These sequences are full-length and part-length members of the RHS (retrotransposon hot spot) family in Trypanosoma brucei and Trypanosoma cruzi. Members of this family are frequently interrupted by non-LTR retrotransposons inserted at exactly the same relative position.
Probab=28.36 E-value=4.4e+02 Score=26.90 Aligned_cols=100 Identities=14% Similarity=0.256 Sum_probs=63.0
Q ss_pred cHHHHHHHHHHcC---CCCCceEeecccceeeeeecCCCCCCCCCccccCCCCCCCcceehHHhhhhccCCCceEEEcCC
Q psy1028 278 NANWSVNYYLYKG---IPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKN 354 (424)
Q Consensus 278 ~~~~~~~~~~~~g---vp~~KlvlGlp~YG~~~~~~~~~~~~~~~~~~g~~~~g~~g~~~y~~i~~~~~~~~~~~~~D~~ 354 (424)
-++..|+.|...+ -|.-.|++|-|--|.++...+ ++-|+-+.=-...-....++-
T Consensus 107 iVk~~l~~W~~~~~~~~~~p~vlIGTPGIGKS~~~GS--------------------~LLyqLLHy~~~~L~vVaYfv-- 164 (439)
T PF07999_consen 107 IVKRDLDRWLSGRGERDPRPFVLIGTPGIGKSFGTGS--------------------YLLYQLLHYDAEKLPVVAYFV-- 164 (439)
T ss_pred HHHHHHHHHhccCCCCCCCceEEEecCCcCccccchh--------------------hhhhhhhcCChhhccEEEEEE--
Confidence 4688888888532 244569999988887765421 234432221111111112222
Q ss_pred CeeeEEEe--CC----EEEEECCHHHHHHHHHHHHhcCCceEEEeeccCCC
Q psy1028 355 TSVPYAYR--GD----QWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDD 399 (424)
Q Consensus 355 ~~~~y~~~--~~----~~i~ydd~~Si~~K~~~a~~~glgGv~iW~l~~Dd 399 (424)
....|.++ ++ +-+.|.+.......++-....|..|.+|.+++.+.
T Consensus 165 ~~~aYif~k~~~~~~G~Vv~Y~~~~~a~~~i~~~~~~g~~GyiI~Dv~~~~ 215 (439)
T PF07999_consen 165 GGEAYIFHKTGGGEAGRVVFYKDQEAAVSVINEMSSRGVKGYIIYDVAKKG 215 (439)
T ss_pred eceEEEEEeccCCcCceEEEecCchHHHHHHHHHHhhCceEEEEEeccccc
Confidence 12456664 33 67889998888888887778999999999998775
No 164
>TIGR02801 tolR TolR protein. The model describes the inner membrane protein TolR, part of the TolR/TolQ complex that transduces energy from the proton-motive force, through TolA, to an outer membrane complex made up of TolB and Pal (peptidoglycan-associated lipoprotein). The complex is required to maintain outer membrane integrity, and defects may cause a defect in the import of some organic compounds in addition to the resulting morphologic. While several gene pairs homologous to talR and tolQ may be found in a single genome, but the scope of this model is set to favor finding only bone fide TolR, supported by operon structure as well as by score.
Probab=28.16 E-value=3.2e+02 Score=22.22 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEE
Q psy1028 119 YYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDL 178 (424)
Q Consensus 119 ~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdi 178 (424)
....+.+.++++|+.+|++..- .+..-.-+-.+++.+++.|+.-|.|
T Consensus 80 L~~~L~~~~~~~~~~~v~i~aD-------------~~~~~~~vv~vmd~~~~~G~~~v~l 126 (129)
T TIGR02801 80 LLAEIAAALAANPDTPVLIRAD-------------KTVPYGEVIKVMALLKQAGIEKVGL 126 (129)
T ss_pred HHHHHHHHHhhCCCceEEEEcC-------------CCCCHHHHHHHHHHHHHcCCCeEEE
Confidence 3455666666677777666542 1222244677889999999887765
No 165
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=28.01 E-value=3.5e+02 Score=24.07 Aligned_cols=64 Identities=19% Similarity=0.187 Sum_probs=37.9
Q ss_pred HHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEeee
Q psy1028 166 EFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMG 245 (424)
Q Consensus 166 ~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmt 245 (424)
+.+.+.|.|||-+.-+.. +....+++.+|+ .++.+.+.+.+... .-..+.+...+||+.+|+
T Consensus 78 ~~~~~~g~d~v~vh~~~~-----------~~~~~~~~~~~~---~~~~~g~~~~~~t~----~e~~~~~~~~~d~i~~~~ 139 (220)
T PRK05581 78 PDFAKAGADIITFHVEAS-----------EHIHRLLQLIKS---AGIKAGLVLNPATP----LEPLEDVLDLLDLVLLMS 139 (220)
T ss_pred HHHHHcCCCEEEEeeccc-----------hhHHHHHHHHHH---cCCEEEEEECCCCC----HHHHHHHHhhCCEEEEEE
Confidence 334577999988877643 122334444444 56666666633211 112455667799999998
Q ss_pred cc
Q psy1028 246 YD 247 (424)
Q Consensus 246 YD 247 (424)
++
T Consensus 140 ~~ 141 (220)
T PRK05581 140 VN 141 (220)
T ss_pred EC
Confidence 75
No 166
>PRK00071 nadD nicotinic acid mononucleotide adenylyltransferase; Provisional
Probab=27.92 E-value=4.3e+02 Score=23.42 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=55.8
Q ss_pred ceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEe-ccCCCCCCCCchhhHHHHHHHHHHHHHHcCCC
Q psy1028 133 LKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLD-WEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGR 211 (424)
Q Consensus 133 ~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiD-wE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~ 211 (424)
-+|++.+.......-..-..+.+.|.+.++.+++ +.+++.++ ||--.. ........|+.|++..+ +
T Consensus 34 d~v~~~p~~~~~~k~~~~~~~~~~R~~m~~~a~~-----~~~~~~v~~~E~~~~-------~~syT~~tl~~l~~~~p-~ 100 (203)
T PRK00071 34 DEVWFLPNPGPPHKPQKPLAPLEHRLAMLELAIA-----DNPRFSVSDIELERP-------GPSYTIDTLRELRARYP-D 100 (203)
T ss_pred CEEEEEeCCCCCCCCCCCCCCHHHHHHHHHHHhc-----CCCceEEeHHHHhCC-------CCCCHHHHHHHHHHHCC-C
Confidence 4677766621111111123466777776665443 45678886 774321 11234478888888774 4
Q ss_pred cEEEEEecCCc-cccccccChhhhhccccEEEee
Q psy1028 212 FLMTVAVAAPG-PIIDRAYDVPLMGRLVDFVSIM 244 (424)
Q Consensus 212 ~~ls~av~~~~-~~~~~~~d~~~l~~~vD~v~vm 244 (424)
..+..-+.... ......+++++|.+.+.++++-
T Consensus 101 ~~~~fiiG~D~l~~l~~W~~~~~i~~~~~~iv~~ 134 (203)
T PRK00071 101 VELVFIIGADALAQLPRWKRWEEILDLVHFVVVP 134 (203)
T ss_pred CcEEEEEcHHHhhhcccccCHHHHHHhCcEEEEe
Confidence 44445554432 1233467889999988888665
No 167
>PRK11267 biopolymer transport protein ExbD; Provisional
Probab=27.77 E-value=3.6e+02 Score=22.50 Aligned_cols=65 Identities=9% Similarity=0.050 Sum_probs=39.8
Q ss_pred EecCCCeEeecCC--ChhhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEe
Q psy1028 102 QVSKNNTVAHLEP--DHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLD 179 (424)
Q Consensus 102 ~~~~~g~~~~~~~--~~~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiD 179 (424)
.++.+|++...+. +.++....+.++++++|+..|++..- .+..-.-+-.+.+.+++.|+.=|.|-
T Consensus 67 ~I~~~g~i~~~~~~v~~~~L~~~L~~~~~~~~~~~V~I~aD-------------~~~~~~~vv~vmd~l~~aG~~~v~l~ 133 (141)
T PRK11267 67 SVKADNSMFIGNDPVTDETMITALDALTEGKKDTTIFFRAD-------------KTVDYETLMKVMDTLHQAGYLKIGLV 133 (141)
T ss_pred EEeCCCCEEECCccccHHHHHHHHHHHHhcCCCceEEEEcC-------------CCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence 4556677665332 23355556666767677777665542 12222446788889999998877663
No 168
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=27.61 E-value=4.9e+02 Score=24.00 Aligned_cols=99 Identities=10% Similarity=0.071 Sum_probs=52.2
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-cCCCCCchhhhcCHHHHH---HHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhh
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-DAGTGNFAKAVSTRANRL---AFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHE 193 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~~~~~~~~~~~~~~~~r~---~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~ 193 (424)
...++++++.+++ +++|. +++ ....-.+.-+..++..|+ .++...+++.+..|..-|.+-.-..+......+ .
T Consensus 47 ~~~~~l~~~~~~~-gl~v~-s~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lGa~~i~~~~~~~~~~~~~~~-~ 123 (275)
T PRK09856 47 GGIKQIKALAQTY-QMPII-GYTPETNGYPYNMMLGDEHMRRESLDMIKLAMDMAKEMNAGYTLISAAHAGYLTPPNV-I 123 (275)
T ss_pred hHHHHHHHHHHHc-CCeEE-EecCcccCcCccccCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCCCHHH-H
Confidence 3566777777776 89874 554 111111111223444554 466778888899999988773211111000112 3
Q ss_pred HHHHHHHHHHHHHHcCCCcEEEEEecC
Q psy1028 194 KRMFSKLLQQLKFTLSGRFLMTVAVAA 220 (424)
Q Consensus 194 ~~~~~~~l~~Lr~~l~~~~~ls~av~~ 220 (424)
.+.+...+++|.... ...-|.+++..
T Consensus 124 ~~~~~~~l~~l~~~a-~~~gv~l~iE~ 149 (275)
T PRK09856 124 WGRLAENLSELCEYA-ENIGMDLILEP 149 (275)
T ss_pred HHHHHHHHHHHHHHH-HHcCCEEEEec
Confidence 345555555555555 33456666664
No 169
>PRK11024 colicin uptake protein TolR; Provisional
Probab=27.41 E-value=3.5e+02 Score=22.53 Aligned_cols=50 Identities=14% Similarity=0.045 Sum_probs=32.3
Q ss_pred hhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEe
Q psy1028 117 VKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLD 179 (424)
Q Consensus 117 ~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiD 179 (424)
++....+.++.+.+|+..|++..- ... .-.-+-.+.+.+++.|+.-|.|-
T Consensus 88 ~~L~~~l~~~~~~~~~~~V~i~aD--~~~-----------~~~~vv~vmd~~k~aG~~~v~l~ 137 (141)
T PRK11024 88 EQVVAEAKSRFKANPKTVFLIGGA--KDV-----------PYDEIIKALNLLHSAGVKSVGLM 137 (141)
T ss_pred HHHHHHHHHHHhhCCCceEEEEcC--CCC-----------CHHHHHHHHHHHHHcCCCeEEEE
Confidence 344556677777777777776542 111 12346678889999999877664
No 170
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=27.36 E-value=2.9e+02 Score=24.29 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=37.7
Q ss_pred HHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEee
Q psy1028 165 LEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIM 244 (424)
Q Consensus 165 ~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vm 244 (424)
++.+.+.|.|||-+.-+.. +....+++.+++. +....+.+ .+... .-.+.++...+|++.+|
T Consensus 72 ~~~~~~~gadgv~vh~~~~-----------~~~~~~~~~~~~~-g~~~~~~~--~~~t~----~e~~~~~~~~~d~i~~~ 133 (210)
T TIGR01163 72 IEDFAEAGADIITVHPEAS-----------EHIHRLLQLIKDL-GAKAGIVL--NPATP----LEFLEYVLPDVDLVLLM 133 (210)
T ss_pred HHHHHHcCCCEEEEccCCc-----------hhHHHHHHHHHHc-CCcEEEEE--CCCCC----HHHHHHHHhhCCEEEEE
Confidence 6667789999998865432 1234455555443 23334433 32211 12345666678999999
Q ss_pred ecc
Q psy1028 245 GYD 247 (424)
Q Consensus 245 tYD 247 (424)
+.+
T Consensus 134 ~~~ 136 (210)
T TIGR01163 134 SVN 136 (210)
T ss_pred EEc
Confidence 865
No 171
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=27.23 E-value=5.3e+02 Score=25.14 Aligned_cols=107 Identities=15% Similarity=0.100 Sum_probs=59.1
Q ss_pred HHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCC-CchhhHHHHHHHHHHH
Q psy1028 126 MKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGP-NKSHEKRMFSKLLQQL 204 (424)
Q Consensus 126 lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~-~~~~~~~~~~~~l~~L 204 (424)
++++..++.+++|||..... ......+.|++.+..+-. ..|.|+|+.--|...+. ..+ +.+.+.++++.+
T Consensus 128 i~~~~~~~~i~vsi~~~~~~------~~~~~~~dy~~~~~~~~~--~ad~iElNlScPn~~~~~~~~-~~~~~~~i~~~V 198 (335)
T TIGR01036 128 LKRARYKGPIGINIGKNKDT------PSEDAKEDYAACLRKLGP--LADYLVVNVSSPNTPGLRDLQ-YKAELRDLLTAV 198 (335)
T ss_pred HhhccCCCcEEEEEeCCCCC------CcccCHHHHHHHHHHHhh--hCCEEEEEccCCCCCCccccc-CHHHHHHHHHHH
Confidence 33333468899999832110 112234566665555533 38999999976654321 233 567788888888
Q ss_pred HHHcC-----CCcEEEEEecCCccccccccChhhhhc-----cccEEEeee
Q psy1028 205 KFTLS-----GRFLMTVAVAAPGPIIDRAYDVPLMGR-----LVDFVSIMG 245 (424)
Q Consensus 205 r~~l~-----~~~~ls~av~~~~~~~~~~~d~~~l~~-----~vD~v~vmt 245 (424)
|+... ...-|.+-+++... .-++..+++ -+|.|.+..
T Consensus 199 ~~~~~~~~~~~~~Pv~vKLsP~~~----~~~i~~ia~~~~~~GadGi~l~N 245 (335)
T TIGR01036 199 KQEQDGLRRVHRVPVLVKIAPDLT----ESDLEDIADSLVELGIDGVIATN 245 (335)
T ss_pred HHHHHhhhhccCCceEEEeCCCCC----HHHHHHHHHHHHHhCCcEEEEEC
Confidence 87764 12345555554322 012333433 467777653
No 172
>PRK14057 epimerase; Provisional
Probab=27.07 E-value=2e+02 Score=26.92 Aligned_cols=65 Identities=11% Similarity=0.062 Sum_probs=43.0
Q ss_pred HHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHc----C--CCcEEEEEecCCccccccccChhhhhccccEE
Q psy1028 168 LIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTL----S--GRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241 (424)
Q Consensus 168 l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l----~--~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v 241 (424)
+.+.|.|=|-|..|... + ...+|+.+|+.= + .+....+|+.+... --.+..+.+.+|+|
T Consensus 94 ~~~aGad~It~H~Ea~~--------~---~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp----~e~i~~~l~~vD~V 158 (254)
T PRK14057 94 CVKAGAHCITLQAEGDI--------H---LHHTLSWLGQQTVPVIGGEMPVIRGISLCPATP----LDVIIPILSDVEVI 158 (254)
T ss_pred HHHhCCCEEEEeecccc--------C---HHHHHHHHHHcCCCcccccccceeEEEECCCCC----HHHHHHHHHhCCEE
Confidence 34458999999999541 2 344556666531 1 23567788877544 22456677899999
Q ss_pred Eeeecc
Q psy1028 242 SIMGYD 247 (424)
Q Consensus 242 ~vmtYD 247 (424)
.||+-+
T Consensus 159 LvMtV~ 164 (254)
T PRK14057 159 QLLAVN 164 (254)
T ss_pred EEEEEC
Confidence 999875
No 173
>PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4.2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A ....
Probab=26.94 E-value=4.7e+02 Score=23.53 Aligned_cols=74 Identities=11% Similarity=0.087 Sum_probs=51.1
Q ss_pred CCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCC
Q psy1028 131 PNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSG 210 (424)
Q Consensus 131 ~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~ 210 (424)
.+.||++|...+. .++...+ +.++++-+.+.|.|-+-|-.... +.+ |...+..++++++.. ..
T Consensus 112 ~~~~iI~S~H~f~--------~tp~~~~--l~~~~~~~~~~gadivKia~~~~-----~~~-D~~~l~~~~~~~~~~-~~ 174 (224)
T PF01487_consen 112 GGTKIILSYHDFE--------KTPSWEE--LIELLEEMQELGADIVKIAVMAN-----SPE-DVLRLLRFTKEFREE-PD 174 (224)
T ss_dssp TTSEEEEEEEESS-----------THHH--HHHHHHHHHHTT-SEEEEEEE-S-----SHH-HHHHHHHHHHHHHHH-TS
T ss_pred CCCeEEEEeccCC--------CCCCHHH--HHHHHHHHHhcCCCeEEEEeccC-----CHH-HHHHHHHHHHHHhhc-cC
Confidence 3899999998322 1222222 66688888899999999988865 345 778888888888887 45
Q ss_pred CcEEEEEecCC
Q psy1028 211 RFLMTVAVAAP 221 (424)
Q Consensus 211 ~~~ls~av~~~ 221 (424)
.-++.+++...
T Consensus 175 ~p~i~~~MG~~ 185 (224)
T PF01487_consen 175 IPVIAISMGEL 185 (224)
T ss_dssp SEEEEEEETGG
T ss_pred CcEEEEEcCCC
Confidence 66777777654
No 174
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=26.82 E-value=83 Score=23.86 Aligned_cols=48 Identities=13% Similarity=0.086 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcC---CCcEEEEEecCCccccccccChhhhh-ccccEEEeeec
Q psy1028 194 KRMFSKLLQQLKFTLS---GRFLMTVAVAAPGPIIDRAYDVPLMG-RLVDFVSIMGY 246 (424)
Q Consensus 194 ~~~~~~~l~~Lr~~l~---~~~~ls~av~~~~~~~~~~~d~~~l~-~~vD~v~vmtY 246 (424)
.+.+..+++++.+.++ +.-.||+...... ...+..+. +.+|++.+..|
T Consensus 37 ~~~~~~~l~~~~~~iR~~dP~~pvt~g~~~~~-----~~~~~~~~~~~~DvisfH~Y 88 (88)
T PF12876_consen 37 AEAYAEWLKEAFRWIRAVDPSQPVTSGFWGGD-----WEDLEQLQAENLDVISFHPY 88 (88)
T ss_dssp SHHHHHHHHHHHHHHHTT-TTS-EE--B--S------TTHHHHS--TT-SSEEB-EE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcEEeecccCC-----HHHHHHhchhcCCEEeeecC
Confidence 4678888888888887 5556665543321 12245555 88999988766
No 175
>PRK09936 hypothetical protein; Provisional
Probab=26.48 E-value=5.8e+02 Score=24.42 Aligned_cols=140 Identities=11% Similarity=0.109 Sum_probs=78.2
Q ss_pred EEeCCCCCCCCCCCC-------CCCCCccEEEEEEEEecCCCeEeecCCChhhHHHHHHHHHHhCCCceEEEEEecCCCC
Q psy1028 73 YYSLPQNSSGLLPHQ-------LNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAGTG 145 (424)
Q Consensus 73 Y~~~~~~~~~~~~~~-------i~~~~~Thv~~~f~~~~~~g~~~~~~~~~~~~~~~~~~lk~~n~~~kvllsvg~~~~~ 145 (424)
||+.|+.....+..+ +..-.|.++|+-|-... +- .+.. .+..+.+..+.+++. |+||.+-+ ..++.
T Consensus 25 F~Qp~n~d~~~~~~qWq~~~~~~~~~G~~tLivQWt~yG-~~--~fg~--~~g~La~~l~~A~~~-Gl~v~vGL-~~Dp~ 97 (296)
T PRK09936 25 FYQPQNRDSQVTDTQWQGLWSQLRLQGFDTLVVQWTRYG-DA--DFGG--QRGWLAKRLAAAQQA-GLKLVVGL-YADPE 97 (296)
T ss_pred eeccccccCCCCHHHHHHHHHHHHHcCCcEEEEEeeecc-CC--Cccc--chHHHHHHHHHHHHc-CCEEEEcc-cCChH
Confidence 688876643333322 23357999999996662 22 2221 124444444444444 89988766 45556
Q ss_pred CchhhhcCHHHHHHHHH--------HHHHHHHcCCC--CEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC-CCcEE
Q psy1028 146 NFAKAVSTRANRLAFSE--------SILEFLIEHNL--DGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-GRFLM 214 (424)
Q Consensus 146 ~~~~~~~~~~~r~~fi~--------~i~~~l~~~gf--DGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~~~~l 214 (424)
.|..+-.|.+..+.+-+ ....+-...++ +|--|=.|--...=..++ .++.+...|+.+.+.++ .+.-|
T Consensus 98 y~q~~~~d~~~~~~yl~~~l~~~~~qa~~~~~~~~~~v~GWYiP~ElDd~~W~~~~-rR~~L~~~L~~~~~~l~~~~kPv 176 (296)
T PRK09936 98 FFMHQKQDGAALESYLNRQLGASLQQARLWSAAWGVPVDGWYLPAELDDLNWRDEA-RRQPLLTWLNAAQRLIDVSAKPV 176 (296)
T ss_pred HHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCeEEeeeccchhcccCHH-HHHHHHHHHHHHHHhCCCCCCCe
Confidence 66666446555444433 33344455566 998887664311001234 56777788888888887 33344
Q ss_pred EEEecC
Q psy1028 215 TVAVAA 220 (424)
Q Consensus 215 s~av~~ 220 (424)
.|++-.
T Consensus 177 ~ISay~ 182 (296)
T PRK09936 177 HISAFF 182 (296)
T ss_pred EEEeec
Confidence 444443
No 176
>PRK13840 sucrose phosphorylase; Provisional
Probab=26.38 E-value=1.8e+02 Score=30.13 Aligned_cols=57 Identities=14% Similarity=0.017 Sum_probs=33.4
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCCEEEEec-cCCCCCCC-CchhhHHHHHHHHHHHHHHcC
Q psy1028 151 VSTRANRLAFSESILEFLIEHNLDGIDLDW-EFPGWPGP-NKSHEKRMFSKLLQQLKFTLS 209 (424)
Q Consensus 151 ~~~~~~r~~fi~~i~~~l~~~gfDGIdiDw-E~~~~~~~-~~~~~~~~~~~~l~~Lr~~l~ 209 (424)
.++|+.++.+.+ ++.+..+.|.||+-||= -+.-...+ ... ..+.--.|+++||+.++
T Consensus 166 ~~NP~V~~~i~~-il~fwl~~GVDgfRLDAv~~l~K~~gt~c~-~~pe~~~~l~~lr~~~~ 224 (495)
T PRK13840 166 VHSAAGWEYLMS-ILDRFAASHVTLIRLDAAGYAIKKAGTSCF-MIPETFEFIDRLAKEAR 224 (495)
T ss_pred CCCHHHHHHHHH-HHHHHHHCCCCEEEEechhhhhcCCCCCcC-CChHHHHHHHHHHHHhh
Confidence 357777777666 55555567999999993 23211111 111 22334457777777775
No 177
>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional
Probab=26.32 E-value=4.9e+02 Score=27.59 Aligned_cols=125 Identities=17% Similarity=0.144 Sum_probs=69.2
Q ss_pred ChhhHHHHHHHHHHhCCCceEEEEEecCCCCC----------------chhhhcCHHHHHHHHHHHHHHHHcC--CCCEE
Q psy1028 115 DHVKYYRDVVAMKLLNPNLKVLISVTDAGTGN----------------FAKAVSTRANRLAFSESILEFLIEH--NLDGI 176 (424)
Q Consensus 115 ~~~~~~~~~~~lk~~n~~~kvllsvg~~~~~~----------------~~~~~~~~~~r~~fi~~i~~~l~~~--gfDGI 176 (424)
+.++.++..+++....++..|.+.--..+.+. +..+--.-...+-|-.+|.++++.- |-.||
T Consensus 309 ~eeeq~~~y~~i~~~~~~~~v~iRtlDiGgDK~~~~~~~~~E~NP~LG~RgiR~~l~~~~~f~~QlrAilra~~~G~~~I 388 (575)
T PRK11177 309 TEEEQFQAYKAVAEAMGSQAVIVRTMDIGGDKELPYMNLPKEENPFLGWRAIRIAMDRKEILHDQLRAILRASAFGKLRI 388 (575)
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEECcCCCcccccccCCCCCCCCcccccchhhhcCCCHHHHHHHHHHHHHHHcCCCcEE
Confidence 45566777777766665676766543111110 1111111133467788888887764 44444
Q ss_pred EEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC-------CCcEEEEEecCCccccccccChhhhhccccEEEeeecccC
Q psy1028 177 DLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-------GRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYH 249 (424)
Q Consensus 177 diDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-------~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vmtYD~~ 249 (424)
-+= ... +.+ +......++++.+..+. .+..+.+-+.... .....++|++.+||+.|=+.|+.
T Consensus 389 m~P--mV~----t~e-E~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~mIE~p~----a~~~~d~i~~~vDf~sIGtnDL~ 457 (575)
T PRK11177 389 MFP--MII----SVE-EVRELKAEIEILKQELRDEGKAFDESIEIGVMVETPA----AAVIARHLAKEVDFFSIGTNDLT 457 (575)
T ss_pred EEc--CCC----CHH-HHHHHHHHHHHHHHHHHHhccccCCCcEEEEEEeCHH----HHHhHHHHHhhCCEEEECcHHHH
Confidence 332 221 234 55555666665554442 3344444444322 23567888999999999999988
Q ss_pred C
Q psy1028 250 S 250 (424)
Q Consensus 250 ~ 250 (424)
.
T Consensus 458 q 458 (575)
T PRK11177 458 Q 458 (575)
T ss_pred H
Confidence 6
No 178
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=26.20 E-value=1.9e+02 Score=26.99 Aligned_cols=50 Identities=14% Similarity=0.302 Sum_probs=29.6
Q ss_pred HHHHH-HHHHhCCCceEEEEEe----cC-CCCCchhhhcCHHHHHHHHHHHHHHHHc
Q psy1028 120 YRDVV-AMKLLNPNLKVLISVT----DA-GTGNFAKAVSTRANRLAFSESILEFLIE 170 (424)
Q Consensus 120 ~~~~~-~lk~~n~~~kvllsvg----~~-~~~~~~~~~~~~~~r~~fi~~i~~~l~~ 170 (424)
+..+. .|++.||++||+++|. .. .+. -.-++.|.-+...+...+-++++.
T Consensus 154 l~~~~~~l~~~nP~~kiilTVSPVrl~~T~~~-~d~~~an~~SKs~Lr~a~~~l~~~ 209 (251)
T PF08885_consen 154 LEAIIDLLRSINPDIKIILTVSPVRLIATFRD-RDGLVANQYSKSTLRAAAHELVRA 209 (251)
T ss_pred HHHHHHHHHhhCCCceEEEEeccchhhccccc-ccchhhhhhhHHHHHHHHHHHHhc
Confidence 44444 4788899999999998 11 111 133445555555555555555554
No 179
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=25.85 E-value=3.5e+02 Score=23.73 Aligned_cols=65 Identities=20% Similarity=0.145 Sum_probs=38.0
Q ss_pred HHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEee
Q psy1028 165 LEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIM 244 (424)
Q Consensus 165 ~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~vm 244 (424)
++.+.+.|.|||-+..+.. +....+++.++. .+..+.+.+..... .-...++...+|++.+|
T Consensus 73 ~~~~~~~g~dgv~vh~~~~-----------~~~~~~~~~~~~---~~~~~g~~~~~~~~----~~~~~~~~~~~d~i~~~ 134 (211)
T cd00429 73 IEAFAKAGADIITFHAEAT-----------DHLHRTIQLIKE---LGMKAGVALNPGTP----VEVLEPYLDEVDLVLVM 134 (211)
T ss_pred HHHHHHcCCCEEEECccch-----------hhHHHHHHHHHH---CCCeEEEEecCCCC----HHHHHHHHhhCCEEEEE
Confidence 4455688999998866533 122334554443 45666666643211 11234555668999999
Q ss_pred ecc
Q psy1028 245 GYD 247 (424)
Q Consensus 245 tYD 247 (424)
+++
T Consensus 135 ~~~ 137 (211)
T cd00429 135 SVN 137 (211)
T ss_pred EEC
Confidence 874
No 180
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=25.83 E-value=4.3e+02 Score=24.23 Aligned_cols=22 Identities=9% Similarity=0.156 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT 140 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg 140 (424)
..++++++..+++ |++|+|.+.
T Consensus 62 ~~ld~~v~~a~~~-gi~vild~h 83 (281)
T PF00150_consen 62 ARLDRIVDAAQAY-GIYVILDLH 83 (281)
T ss_dssp HHHHHHHHHHHHT-T-EEEEEEE
T ss_pred HHHHHHHHHHHhC-CCeEEEEec
Confidence 4556666666666 999999998
No 181
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=25.81 E-value=2.3e+02 Score=33.05 Aligned_cols=64 Identities=9% Similarity=0.139 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-c---CCC-------------CCch-------------------hhhcCHHHHHHHH
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-D---AGT-------------GNFA-------------------KAVSTRANRLAFS 161 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~---~~~-------------~~~~-------------------~~~~~~~~r~~fi 161 (424)
..++++++..|++ |++|||=|- + .+. ..+. --+.++..|+-.+
T Consensus 247 ~efk~lV~~~H~~-GI~VILDvV~NHt~~~~~~~p~~~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~ 325 (1221)
T PRK14510 247 EEFAQAIKEAQSA-GIAVILDVVFNHTGESNHYGPTLSAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPM 325 (1221)
T ss_pred HHHHHHHHHHHHC-CCEEEEEEccccccCCCCCCCcccccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHH
Confidence 4577777766666 999999876 1 110 0000 0123567777777
Q ss_pred HHHHHHHHcCCCCEEEEeccCC
Q psy1028 162 ESILEFLIEHNLDGIDLDWEFP 183 (424)
Q Consensus 162 ~~i~~~l~~~gfDGIdiDwE~~ 183 (424)
+++.-|++ +|+||.-||.-..
T Consensus 326 d~lr~Wv~-~gVDGfRfDla~~ 346 (1221)
T PRK14510 326 DVLRSWAK-RGVDGFRLDLADE 346 (1221)
T ss_pred HHHHHHHH-hCCCEEEEechhh
Confidence 88888888 9999999997543
No 182
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=25.75 E-value=2.9e+02 Score=27.00 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCCCC------chhhHHHHHHHHHHHHHHcCCCcEEEEEecCC
Q psy1028 159 AFSESILEFLIEHNLDGIDLDWEFPGWPGPN------KSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAP 221 (424)
Q Consensus 159 ~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~------~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~ 221 (424)
.++..+...+.+-||.||.+||..-+...+. .- +.+.+..++..|++++....+.-+-++-+
T Consensus 91 ~y~r~L~~~~~~rg~~~Vv~~~Rgcs~~~n~~p~~yh~G-~t~D~~~~l~~l~~~~~~r~~~avG~SLG 158 (345)
T COG0429 91 PYARGLMRALSRRGWLVVVFHFRGCSGEANTSPRLYHSG-ETEDIRFFLDWLKARFPPRPLYAVGFSLG 158 (345)
T ss_pred HHHHHHHHHHHhcCCeEEEEecccccCCcccCcceeccc-chhHHHHHHHHHHHhCCCCceEEEEeccc
Confidence 5899999999999999999999976553221 11 45788899999999888555444444433
No 183
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=25.73 E-value=3.8e+02 Score=26.28 Aligned_cols=54 Identities=17% Similarity=0.088 Sum_probs=38.7
Q ss_pred CceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHc-CCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC
Q psy1028 132 NLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIE-HNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS 209 (424)
Q Consensus 132 ~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~-~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~ 209 (424)
...+++++|-.. .-.+.+..+++. -+.|-|.||--+- +......+|+++|+.++
T Consensus 96 ~~~~~vavG~~~---------------~d~er~~~L~~~~~g~D~iviD~AhG---------hs~~~i~~ik~ik~~~P 150 (346)
T PRK05096 96 LKHVMVSTGTSD---------------ADFEKTKQILALSPALNFICIDVANG---------YSEHFVQFVAKAREAWP 150 (346)
T ss_pred cceEEEEecCCH---------------HHHHHHHHHHhcCCCCCEEEEECCCC---------cHHHHHHHHHHHHHhCC
Confidence 567888888211 112333444553 5899999999886 66899999999999995
No 184
>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative. This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.
Probab=25.45 E-value=1e+02 Score=28.92 Aligned_cols=51 Identities=8% Similarity=-0.096 Sum_probs=29.5
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC-CCcEEE
Q psy1028 161 SESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS-GRFLMT 215 (424)
Q Consensus 161 i~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~-~~~~ls 215 (424)
...+++.+++.|||||+|........ .. .......-++++++.+. .++.|+
T Consensus 18 ~~e~l~~~~~~G~~~VEl~~~~~~~~---~~-~~~~~~~~~~~~~~~l~~~gl~i~ 69 (279)
T TIGR00542 18 WLERLQLAKTCGFDFVEMSVDETDDR---LS-RLDWSREQRLALVNAIIETGVRIP 69 (279)
T ss_pred HHHHHHHHHHcCCCEEEEecCCccch---hh-ccCCCHHHHHHHHHHHHHcCCCce
Confidence 34566889999999999975443110 00 00011345666777676 666654
No 185
>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated
Probab=25.42 E-value=5.6e+02 Score=23.94 Aligned_cols=107 Identities=20% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcC--------------------CCcEEEEEe
Q psy1028 159 AFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLS--------------------GRFLMTVAV 218 (424)
Q Consensus 159 ~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~--------------------~~~~ls~av 218 (424)
..+.....-+.+.|.|=|||..|.. ..+ +.+.+..+|+.+++..+ ++.-|--.+
T Consensus 25 ~~i~~~A~~~~~~GAdiIDVg~~~~-----~~e-E~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iINsI 98 (261)
T PRK07535 25 AFIQKLALKQAEAGADYLDVNAGTA-----VEE-EPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLINSV 98 (261)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC-----chh-HHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEEeC
Q ss_pred cCCccccccccC--hhhhhccccEEEeeecccCCCccCCCCCCCCCC------CCCCCCCCCCCccccHHHHHHHHHHcC
Q psy1028 219 AAPGPIIDRAYD--VPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAP------LYPAVTDQGYFKSLNANWSVNYYLYKG 290 (424)
Q Consensus 219 ~~~~~~~~~~~d--~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~ap------l~~~~~~~~~~~~~~~~~~~~~~~~~g 290 (424)
..... ..+ ++.+.++-=-+.+|.-|..+. | +. .++..++.+.+.|
T Consensus 99 s~~~~----~~~~~~~l~~~~g~~vv~m~~~~~g~-----------P~t~~~~~~------------~l~~~v~~a~~~G 151 (261)
T PRK07535 99 SAEGE----KLEVVLPLVKKYNAPVVALTMDDTGI-----------PKDAEDRLA------------VAKELVEKADEYG 151 (261)
T ss_pred CCCCc----cCHHHHHHHHHhCCCEEEEecCCCCC-----------CCCHHHHHH------------HHHHHHHHHHHcC
Q ss_pred CCCCceEe
Q psy1028 291 IPANKLLL 298 (424)
Q Consensus 291 vp~~Klvl 298 (424)
+++++|++
T Consensus 152 I~~~~Iil 159 (261)
T PRK07535 152 IPPEDIYI 159 (261)
T ss_pred CCHhHEEE
No 186
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=24.93 E-value=80 Score=23.56 Aligned_cols=30 Identities=13% Similarity=0.070 Sum_probs=25.9
Q ss_pred CchhhhcCHHHHHHHHHHHHHHHHcCCCCE
Q psy1028 146 NFAKAVSTRANRLAFSESILEFLIEHNLDG 175 (424)
Q Consensus 146 ~~~~~~~~~~~r~~fi~~i~~~l~~~gfDG 175 (424)
.|...+.+++.|++|.+.=-+++++||+..
T Consensus 8 ~~~~~~~~~~~re~f~~dp~a~~~~~~Lt~ 37 (77)
T cd07321 8 LLEQLLVKPEVKERFKADPEAVLAEYGLTP 37 (77)
T ss_pred HHHHHhcCHHHHHHHHhCHHHHHHHcCCCH
Confidence 356678899999999999999999998763
No 187
>PRK08446 coproporphyrinogen III oxidase; Provisional
Probab=23.84 E-value=3.8e+02 Score=26.19 Aligned_cols=58 Identities=16% Similarity=0.104 Sum_probs=34.5
Q ss_pred HHHHHHHHhCCCceEEEEEe-cCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccC
Q psy1028 121 RDVVAMKLLNPNLKVLISVT-DAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182 (424)
Q Consensus 121 ~~~~~lk~~n~~~kvllsvg-~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~ 182 (424)
..+..+++. |+. -+||| .+.++..-..+.-....+. +...++.+++.||+-|.+|+-+
T Consensus 99 e~l~~l~~~--Gvn-RiSiGvQS~~~~~L~~lgR~~~~~~-~~~ai~~lr~~g~~~v~iDli~ 157 (350)
T PRK08446 99 AWLKGMKNL--GVN-RISFGVQSFNEDKLKFLGRIHSQKQ-IIKAIENAKKAGFENISIDLIY 157 (350)
T ss_pred HHHHHHHHc--CCC-EEEEecccCCHHHHHHcCCCCCHHH-HHHHHHHHHHcCCCEEEEEeec
Confidence 345566665 555 67888 4333333333333333333 5556778888999988888765
No 188
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=23.72 E-value=1.7e+02 Score=26.36 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCCEEEEe--ccC-CCCCCCCchhhHHHHHHHHHHHHHH
Q psy1028 162 ESILEFLIEHNLDGIDLD--WEF-PGWPGPNKSHEKRMFSKLLQQLKFT 207 (424)
Q Consensus 162 ~~i~~~l~~~gfDGIdiD--wE~-~~~~~~~~~~~~~~~~~~l~~Lr~~ 207 (424)
+++.+.++..+..|||+. .|. ++. . |.....+|++.++..
T Consensus 166 eNv~~ai~~~~p~gvDvsSgvE~~~G~-----K-D~~ki~~f~~~~~~~ 208 (210)
T PRK01222 166 DNVAEAIRQVRPYGVDVSSGVESAPGI-----K-DPEKIRAFIEAVKSA 208 (210)
T ss_pred HHHHHHHHhcCCCEEEecCceECCCCC-----c-CHHHHHHHHHHHHhh
Confidence 345555566678999997 575 543 2 788899999988764
No 189
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=23.54 E-value=2.8e+02 Score=25.58 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=41.8
Q ss_pred HHHHHHHcCCCCEEEEe---ccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhcccc
Q psy1028 163 SILEFLIEHNLDGIDLD---WEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVD 239 (424)
Q Consensus 163 ~i~~~l~~~gfDGIdiD---wE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD 239 (424)
..++.+.+.|.|||-|. +|.. +....+++.+++ .++...+++.+... .-.++.+.+.+|
T Consensus 92 ~~i~~~~~~Gadgvii~dlp~e~~-----------~~~~~~~~~~~~---~Gl~~~~~v~p~T~----~e~l~~~~~~~~ 153 (244)
T PRK13125 92 NFLNMARDVGADGVLFPDLLIDYP-----------DDLEKYVEIIKN---KGLKPVFFTSPKFP----DLLIHRLSKLSP 153 (244)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcH-----------HHHHHHHHHHHH---cCCCEEEEECCCCC----HHHHHHHHHhCC
Confidence 34555667899999996 3422 122334444433 67777777776443 124577888899
Q ss_pred EEEeeec
Q psy1028 240 FVSIMGY 246 (424)
Q Consensus 240 ~v~vmtY 246 (424)
.+.+|+-
T Consensus 154 ~~l~msv 160 (244)
T PRK13125 154 LFIYYGL 160 (244)
T ss_pred CEEEEEe
Confidence 9999965
No 190
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=23.47 E-value=1.3e+02 Score=28.15 Aligned_cols=49 Identities=10% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHH---HHHHHHHHHHcC-CCcEEEE
Q psy1028 161 SESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMF---SKLLQQLKFTLS-GRFLMTV 216 (424)
Q Consensus 161 i~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~---~~~l~~Lr~~l~-~~~~ls~ 216 (424)
....++.+++.|||||+|....... ....+ ...++++++.+. .++.++.
T Consensus 23 ~~e~~~~~~~~G~~~iEl~~~~~~~-------~~~~~~~~~~~~~~l~~~l~~~gl~i~~ 75 (283)
T PRK13209 23 WLEKLAIAKTAGFDFVEMSVDESDE-------RLARLDWSREQRLALVNALVETGFRVNS 75 (283)
T ss_pred HHHHHHHHHHcCCCeEEEecCcccc-------chhccCCCHHHHHHHHHHHHHcCCceeE
No 191
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=23.42 E-value=2.3e+02 Score=25.17 Aligned_cols=65 Identities=22% Similarity=0.200 Sum_probs=38.5
Q ss_pred HHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccE
Q psy1028 161 SESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDF 240 (424)
Q Consensus 161 i~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~ 240 (424)
++.|.+++.+.++|||.|.-..+ ..+++++|+.++......+.+...... .-.......+|+
T Consensus 62 ~~~i~~ia~~~~~d~Vqlhg~e~--------------~~~~~~l~~~~~~~~i~~i~~~~~~~~----~~~~~~~~~aD~ 123 (203)
T cd00405 62 LEEILEIAEELGLDVVQLHGDES--------------PEYCAQLRARLGLPVIKAIRVKDEEDL----EKAAAYAGEVDA 123 (203)
T ss_pred HHHHHHHHHhcCCCEEEECCCCC--------------HHHHHHHHhhcCCcEEEEEecCChhhH----HHhhhccccCCE
Confidence 56777888899999999975432 136777787775455443444432110 001223356798
Q ss_pred EEe
Q psy1028 241 VSI 243 (424)
Q Consensus 241 v~v 243 (424)
+.+
T Consensus 124 il~ 126 (203)
T cd00405 124 ILL 126 (203)
T ss_pred EEE
Confidence 854
No 192
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=23.24 E-value=4.4e+02 Score=25.57 Aligned_cols=31 Identities=23% Similarity=0.279 Sum_probs=22.5
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCEEEEeccCC
Q psy1028 152 STRANRLAFSESILEFLIEHNLDGIDLDWEFP 183 (424)
Q Consensus 152 ~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~ 183 (424)
.+++.|+=|.+.+.++ .+.|+||+=+|+-.+
T Consensus 130 tnp~a~~ww~~~~~~~-~~~Gvdg~w~D~~Ep 160 (339)
T cd06604 130 TNPKVREWWGSLYKKF-VDLGVDGIWNDMNEP 160 (339)
T ss_pred CChHHHHHHHHHHHHH-hhCCCceEeecCCCc
Confidence 5677787676655554 478999999998544
No 193
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=23.18 E-value=2.1e+02 Score=24.98 Aligned_cols=44 Identities=14% Similarity=0.139 Sum_probs=33.3
Q ss_pred HHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCC
Q psy1028 167 FLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGR 211 (424)
Q Consensus 167 ~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~ 211 (424)
.+++.|+.||-+|....-......+ -.+.+...++++++.+..+
T Consensus 35 ~Lk~~Gik~li~DkDNTL~~~~~~~-i~~~~~~~~~~l~~~~~~~ 78 (168)
T PF09419_consen 35 HLKKKGIKALIFDKDNTLTPPYEDE-IPPEYAEWLNELKKQFGKD 78 (168)
T ss_pred hhhhcCceEEEEcCCCCCCCCCcCc-CCHHHHHHHHHHHHHCCCC
Confidence 5889999999999986554322334 4577899999999998643
No 194
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=22.98 E-value=4.3e+02 Score=25.54 Aligned_cols=51 Identities=12% Similarity=0.144 Sum_probs=32.9
Q ss_pred HHHHHcCCCCEEEEeccCCCC----CC-CC--chhhHHHHHHHHHHHHHHcCCCcEEEEEe
Q psy1028 165 LEFLIEHNLDGIDLDWEFPGW----PG-PN--KSHEKRMFSKLLQQLKFTLSGRFLMTVAV 218 (424)
Q Consensus 165 ~~~l~~~gfDGIdiDwE~~~~----~~-~~--~~~~~~~~~~~l~~Lr~~l~~~~~ls~av 218 (424)
+..+.+.|+|+|||+.--|.. .+ |. -. +.+...++++.+|++++ +-+++-+
T Consensus 83 a~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~-~p~~~~eiv~av~~a~d--~pv~vKi 140 (321)
T PRK10415 83 ARINVESGAQIIDINMGCPAKKVNRKLAGSALLQ-YPDLVKSILTEVVNAVD--VPVTLKI 140 (321)
T ss_pred HHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhc-CHHHHHHHHHHHHHhcC--CceEEEE
Confidence 344567899999999986641 11 11 22 56677888888888874 3344433
No 195
>PF12138 Spherulin4: Spherulation-specific family 4; InterPro: IPR021986 This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 250 and 398 amino acids in length. There is a conserved NPG sequence motif and there are two completely conserved G residues that may be functionally important. Starvation will often induce spherulation - the production of spores - and this process may involve DNA-methylation. Changes in the methylation of spherulin4 are associated with the formation of spherules, but these changes are probably transient. Methylation of the gene accompanies its transcriptional activation, and spherulin4 mRNA is only detectable in late spherulating cultures and mature spherules. It is a spherulation-specific protein.
Probab=22.91 E-value=6.2e+02 Score=23.56 Aligned_cols=107 Identities=16% Similarity=0.139 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHhCCCceEEEEEe-cCCCCCchhhhcCHHHHHHHHHHHHHHHH-----cCCCCEEEEeccCCCCCCCCch
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVT-DAGTGNFAKAVSTRANRLAFSESILEFLI-----EHNLDGIDLDWEFPGWPGPNKS 191 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg-~~~~~~~~~~~~~~~~r~~fi~~i~~~l~-----~~gfDGIdiDwE~~~~~~~~~~ 191 (424)
...+.+.+|+ +.+|+|++==|- ..+...++.+.+ =|+.-..|-. .+++|||-||= -+.. .+
T Consensus 54 ~Y~~~i~~L~-~~~nv~vlGYV~T~Yg~R~~~~V~~-------dI~~Y~~W~~~~~~~~~~vdGIFfDE-~p~~----~~ 120 (253)
T PF12138_consen 54 NYAAAIPRLN-SYANVRVLGYVHTSYGSRPLSEVKA-------DIDTYASWYGQSEDYGYRVDGIFFDE-APND----YA 120 (253)
T ss_pred HHHHHHHHHH-hcCCCcEEEEEEccccCCCHHHHHH-------HHHHHhhccccccCCCcccceEEEec-CCCc----HH
Confidence 4555666674 345899876665 444443443332 2444455543 37899999994 3321 23
Q ss_pred hhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChhhhhccccEEEe
Q psy1028 192 HEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSI 243 (424)
Q Consensus 192 ~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~~l~~~vD~v~v 243 (424)
..+.|..+-..+|+.++.+-.-.+...++.... -+.+.+.+|.+++
T Consensus 121 -~~~y~~~l~~~vk~~~~~~~~~~VV~NPGt~~p-----~~~y~~~aD~~V~ 166 (253)
T PF12138_consen 121 -NLPYYQNLYNYVKSAFGLGGDGLVVLNPGTAVP-----DPGYASIADVVVV 166 (253)
T ss_pred -HHHHHHHHHHHHHhccccCCCCEEEeCCCCCCC-----cchhhcccCEEEE
Confidence 456666777777775541222233333322111 1334455888754
No 196
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=22.82 E-value=1.4e+02 Score=28.70 Aligned_cols=44 Identities=14% Similarity=0.111 Sum_probs=32.8
Q ss_pred Cc-eEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEecc
Q psy1028 132 NL-KVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181 (424)
Q Consensus 132 ~~-kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE 181 (424)
|+ ++++-+..- +++.|++..+.....+.++|.+|+|+|.|.-.-
T Consensus 127 Gvp~ivvflnK~------Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii 171 (394)
T COG0050 127 GVPYIVVFLNKV------DMVDDEELLELVEMEVRELLSEYGFPGDDTPII 171 (394)
T ss_pred CCcEEEEEEecc------cccCcHHHHHHHHHHHHHHHHHcCCCCCCccee
Confidence 66 455555422 266788888888889999999999999887543
No 197
>PRK13660 hypothetical protein; Provisional
Probab=22.72 E-value=4.4e+02 Score=23.30 Aligned_cols=82 Identities=13% Similarity=0.145 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCcc--ccc--cccChh
Q psy1028 157 RLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGP--IID--RAYDVP 232 (424)
Q Consensus 157 r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~--~~~--~~~d~~ 232 (424)
+..+-+.|..++++ |++ |=..+..-| --..-+..+-+||... +++.|.+++|.... .|+ ..--+.
T Consensus 28 K~aL~~~l~~~~e~----G~~--wfi~ggalG----~d~wAaEvvl~LK~~y-p~lkL~~~~PF~~q~~~W~e~~q~~y~ 96 (182)
T PRK13660 28 KKAIKRKLIALLEE----GLE--WVIISGQLG----VELWAAEVVLELKEEY-PDLKLAVITPFEEHGENWNEANQEKLA 96 (182)
T ss_pred HHHHHHHHHHHHHC----CCC--EEEECCcch----HHHHHHHHHHHHHhhC-CCeEEEEEeCccchhhcCCHHHHHHHH
Confidence 34555667777663 433 333322100 1133456788888887 89999999998643 222 122366
Q ss_pred hhhccccEEEeeecccC
Q psy1028 233 LMGRLVDFVSIMGYDYH 249 (424)
Q Consensus 233 ~l~~~vD~v~vmtYD~~ 249 (424)
.|.+.+|++...+-.++
T Consensus 97 ~i~~~aD~v~~vs~~~y 113 (182)
T PRK13660 97 NILKQADFVKSISKRPY 113 (182)
T ss_pred HHHHhCCEEEEecCCCC
Confidence 78889999988865544
No 198
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=22.20 E-value=7.4e+02 Score=24.18 Aligned_cols=73 Identities=19% Similarity=0.317 Sum_probs=40.8
Q ss_pred HHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHH
Q psy1028 124 VAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQ 203 (424)
Q Consensus 124 ~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~ 203 (424)
.++|+..|++||++-+-..+ +.+..+.|.+.+.+.= -.||=|-+.+- |.. .. ....+...|+.
T Consensus 161 ~AVr~~~p~~kV~lH~~~~~---------~~~~~~~~f~~l~~~g--~d~DviGlSyY-P~w----~~-~l~~l~~~l~~ 223 (332)
T PF07745_consen 161 KAVREVDPNIKVMLHLANGG---------DNDLYRWFFDNLKAAG--VDFDVIGLSYY-PFW----HG-TLEDLKNNLND 223 (332)
T ss_dssp HHHHTHSSTSEEEEEES-TT---------SHHHHHHHHHHHHHTT--GG-SEEEEEE--STT----ST--HHHHHHHHHH
T ss_pred HHHHhcCCCCcEEEEECCCC---------chHHHHHHHHHHHhcC--CCcceEEEecC-CCC----cc-hHHHHHHHHHH
Confidence 45677789999999986221 2233344444444331 22555555442 221 11 46789999999
Q ss_pred HHHHcCCCcE
Q psy1028 204 LKFTLSGRFL 213 (424)
Q Consensus 204 Lr~~l~~~~~ 213 (424)
|++++++...
T Consensus 224 l~~ry~K~V~ 233 (332)
T PF07745_consen 224 LASRYGKPVM 233 (332)
T ss_dssp HHHHHT-EEE
T ss_pred HHHHhCCeeE
Confidence 9999965443
No 199
>COG0848 ExbD Biopolymer transport protein [Intracellular trafficking and secretion]
Probab=22.17 E-value=4.7e+02 Score=21.87 Aligned_cols=70 Identities=13% Similarity=0.145 Sum_probs=42.7
Q ss_pred EEEecCCCeEeecCC--ChhhHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEE
Q psy1028 100 FAQVSKNNTVAHLEP--DHVKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGID 177 (424)
Q Consensus 100 f~~~~~~g~~~~~~~--~~~~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGId 177 (424)
.+.++.+|++...+. +.+..-.++.++.+.+.+-.|++.-- ....-..+-.+.+.+++.|++-|-
T Consensus 63 ~v~i~~~G~~~l~~~~v~~~~l~~~l~~~~~~~~~~~v~i~aD-------------~~v~y~~vv~vm~~l~~aG~~~v~ 129 (137)
T COG0848 63 IVSVDADGQIYLNDKPVSLEELEAALAALAKGKKNPRVVIRAD-------------KNVKYGTVVKVMDLLKEAGFKKVG 129 (137)
T ss_pred EEEEeCCCcEEECCccccHHHHHHHHHHHhcCCCCceEEEEeC-------------CCCCHHHHHHHHHHHHHcCCceEE
Confidence 456777888877642 33455555666663222334554432 122225577899999999999888
Q ss_pred EeccC
Q psy1028 178 LDWEF 182 (424)
Q Consensus 178 iDwE~ 182 (424)
|--+.
T Consensus 130 L~t~~ 134 (137)
T COG0848 130 LVTEK 134 (137)
T ss_pred EEecC
Confidence 76543
No 200
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=22.04 E-value=5e+02 Score=23.40 Aligned_cols=73 Identities=15% Similarity=0.120 Sum_probs=46.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCCccccccccChh
Q psy1028 153 TRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVP 232 (424)
Q Consensus 153 ~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~d~~ 232 (424)
||++. .-+..++..+.+.|.|+|-|= ++ ..- +.+++..+++.+|+..+....| .|. +..
T Consensus 6 DP~k~-e~~~~ia~~v~~~gtDaI~VG----GS---~gv-t~~~~~~~v~~ik~~~~lPvil---fp~---------~~~ 64 (205)
T TIGR01769 6 DPEKS-DEIEKIAKNAKDAGTDAIMVG----GS---LGI-VESNLDQTVKKIKKITNLPVIL---FPG---------NVN 64 (205)
T ss_pred CCCcH-HHHHHHHHHHHhcCCCEEEEc----Cc---CCC-CHHHHHHHHHHHHhhcCCCEEE---ECC---------Ccc
Confidence 45544 334447778889999999652 11 112 5678888999998865433333 222 234
Q ss_pred hhhccccEEEeeec
Q psy1028 233 LMGRLVDFVSIMGY 246 (424)
Q Consensus 233 ~l~~~vD~v~vmtY 246 (424)
.+.+.+|.+.+|+-
T Consensus 65 ~i~~~aD~~~~~sl 78 (205)
T TIGR01769 65 GLSRYADAVFFMSL 78 (205)
T ss_pred ccCcCCCEEEEEEe
Confidence 56688999999974
No 201
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=21.61 E-value=3.6e+02 Score=27.23 Aligned_cols=34 Identities=26% Similarity=0.341 Sum_probs=27.2
Q ss_pred hcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCC
Q psy1028 151 VSTRANRLAFSESILEFLIEHNLDGIDLDWEFPG 184 (424)
Q Consensus 151 ~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~ 184 (424)
+.+++.++=+.+.+.++++.+|+||.=+|+-.+.
T Consensus 149 ftnp~a~~w~~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 149 FTNPEARDWWKEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp TTSHHHHHHHHHHHHHHHTTST-SEEEEESTTTB
T ss_pred CCChhHHHHHHHHHHHHHhccCCceEEeecCCcc
Confidence 4677788888889999888889999999995444
No 202
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=21.57 E-value=1.8e+02 Score=26.99 Aligned_cols=48 Identities=21% Similarity=0.005 Sum_probs=31.2
Q ss_pred HHHHHHcCCCCEEEEeccCCCCCCCCchhhHHHHHHHHHHHHHHcCCCcEEEEEecCC
Q psy1028 164 ILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAP 221 (424)
Q Consensus 164 i~~~l~~~gfDGIdiDwE~~~~~~~~~~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~ 221 (424)
+.+.+...|||.|-||.|+-.. +......+++..+. .+..+-+.+|..
T Consensus 25 ~~e~~~~~g~D~v~iDlEH~~~-------~~~~~~~~~~a~~~---~g~~~~VRv~~~ 72 (249)
T TIGR02311 25 AAEICAGAGFDWLLIDGEHAPN-------DVRTILSQLQALAP---YPSSPVVRPAIG 72 (249)
T ss_pred HHHHHHhcCCCEEEEeccCCCC-------CHHHHHHHHHHHHh---cCCCcEEECCCC
Confidence 4556777899999999999753 55555555544432 344555666654
No 203
>smart00733 Mterf Mitochondrial termination factor repeats. Human mitochondrial termination factor is a DNA-binding protein that acts as a transcription termination factor. Six repeats occur in human mTERF, that also are present in numerous plant proteins.
Probab=21.49 E-value=82 Score=17.63 Aligned_cols=21 Identities=29% Similarity=0.505 Sum_probs=16.7
Q ss_pred EEEECCHHHHHHHHHHHHhcCC
Q psy1028 366 WISFDNEPSLAYKTEYLMSKGL 387 (424)
Q Consensus 366 ~i~ydd~~Si~~K~~~a~~~gl 387 (424)
.+.++ .+.+..+++|.++.|+
T Consensus 10 il~~~-~~~l~~~~~~l~~~g~ 30 (31)
T smart00733 10 ILGYS-EKKLKPKVEFLKELGF 30 (31)
T ss_pred ccccc-HHHhhHHHHHHHHcCC
Confidence 34456 9999999999998775
No 204
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=20.91 E-value=5e+02 Score=25.40 Aligned_cols=168 Identities=15% Similarity=0.158 Sum_probs=79.9
Q ss_pred hHHHHHHHHHHhCCCceEEEEEecCCCCCchhhhcCHHHHHHHHHHHHHHHHcCCCCEEEEeccCCCCC------C-CCc
Q psy1028 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWP------G-PNK 190 (424)
Q Consensus 118 ~~~~~~~~lk~~n~~~kvllsvg~~~~~~~~~~~~~~~~r~~fi~~i~~~l~~~gfDGIdiDwE~~~~~------~-~~~ 190 (424)
..++++.+.++++ |+++|+=|. +..|..+--+. .-++..++.|++||-+|+-..+.. . -.-
T Consensus 49 ~~~~ell~~Ankl-g~~vivDvn---Psil~~l~~S~--------~~l~~f~e~G~~glRlD~gfS~eei~~ms~~~lki 116 (360)
T COG3589 49 HRFKELLKEANKL-GLRVIVDVN---PSILKELNISL--------DNLSRFQELGVDGLRLDYGFSGEEIAEMSKNPLKI 116 (360)
T ss_pred HHHHHHHHHHHhc-CcEEEEEcC---HHHHhhcCCCh--------HHHHHHHHhhhhheeecccCCHHHHHHHhcCCeEE
Confidence 4567777778887 999999886 12222221111 145677888999999999776420 0 000
Q ss_pred hhhHHHHHHHHHHHHHHcCCCcEEEEEecCCcccccccc---ChhhhhccccEEEeeecccCCCccCCCCCCCCCCCCCC
Q psy1028 191 SHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAY---DVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPA 267 (424)
Q Consensus 191 ~~~~~~~~~~l~~Lr~~l~~~~~ls~av~~~~~~~~~~~---d~~~l~~~vD~v~vmtYD~~~~~w~~~~~g~~apl~~~ 267 (424)
+....+..+++.+|.+... ++..-.+-+-.+.....+. .+.+..+..-..++-+--|..+ ....|+-.|++.+
T Consensus 117 eLN~S~it~~l~~l~~~~a-n~~nl~~cHNyYPr~yTGLS~e~f~~kn~~fk~~~i~t~AFis~---~~~~g~r~~~~~G 192 (360)
T COG3589 117 ELNASTITELLDSLLAYKA-NLENLEGCHNYYPRPYTGLSREHFKRKNEIFKEYNIKTAAFISS---DGAEGPRGPLYEG 192 (360)
T ss_pred EEchhhhHHHHHHHHHhcc-chhhhhhcccccCCcccCccHHHHHHHHHHHHhcCCceEEEEec---CCcCCcccccccC
Confidence 0011223334444444432 1111111111111000111 1222222222222222222222 2222566666643
Q ss_pred CCCCCCCccccHHHHHHHHHHcCCCCCceEeecccc
Q psy1028 268 VTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTY 303 (424)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~gvp~~KlvlGlp~Y 303 (424)
..--+.-++..+...++.+-+.| -+.|++|=++-
T Consensus 193 lpTlE~hR~~~p~~qak~l~~~g--iD~VlIgd~~~ 226 (360)
T COG3589 193 LPTLEAHRYVEPFVQAKDLFKTG--IDDVLIGDQFP 226 (360)
T ss_pred ccchHHhcCCCHHHHHHHHHHhC--CCeEEecCCCC
Confidence 33223334556777788887777 67899986654
Done!