RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1028
(424 letters)
>1vf8_A YM1, secretory protein; chitinase, CHI-lectin, structural
plasticity, functional versatility, immune system; 1.31A
{Mus musculus} SCOP: c.1.8.5 d.26.3.1 PDB: 1e9l_A
Length = 377
Score = 338 bits (868), Expect = e-114
Identities = 115/375 (30%), Positives = 187/375 (49%), Gaps = 24/375 (6%)
Query: 68 YQLFCYYS----LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
YQL CYY+ P ++P LCTH++ AFA + NN + + ++ Y +
Sbjct: 1 YQLMCYYTSWAKDRPIEGSFKPGNIDPCLCTHLIYAFAGMQ-NNEITYTHEQDLRDYEAL 59
Query: 124 VAMKLLNPNLKVLISV--TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K N LK L+++ G F+ VST NR F +S++ FL ++N DG++LDW+
Sbjct: 60 NGLKDKNTELKTLLAIGGWKFGPAPFSAMVSTPQNRQIFIQSVIRFLRQYNFDGLNLDWQ 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTL--------SGRFLMTVAVAAPGPIIDRAYDVPL 233
+PG G + +K +FS L+++++ R L+T A +I Y +P
Sbjct: 120 YPGSRG-SPPKDKHLFSVLVKEMRKAFEEESVEKDIPRLLLTSTGAGIIDVIKSGYKIPE 178
Query: 234 MGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPA 293
+ + +D++ +M YD H G N+PLY + D G LN + ++Y+ G +
Sbjct: 179 LSQSLDYIQVMTYDLHD--PKDGYTGENSPLYKSPYDIGKSADLNVDSIISYWKDHGAAS 236
Query: 294 NKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQ 349
KL++G P YGH++ L +P T G P G G G + Y + FL + T
Sbjct: 237 EKLIVGFPAYGHTFILSDPSKTGIGAPTISTGPPGKYTDESGLLAYYEVCTFLNEGATEV 296
Query: 350 IFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY-HTSP 408
+D VPYAY+G++W+ +DN S K ++L L GA+VW L+ DD++ + H
Sbjct: 297 -WDAPQEVPYAYQGNEWVGYDNVRSFKLKAQWLKDNNLGGAVVWPLDMDDFSGSFCHQRH 355
Query: 409 YPLIKRIKTVLTDDG 423
+PL +K L
Sbjct: 356 FPLTSTLKGDLNIHS 370
>4ay1_A Chitinase-3-like protein 2; chilectin, lectin,
chitooligosaccharide, pseudochitinase, HY; HET: NAG;
1.95A {Homo sapiens}
Length = 365
Score = 332 bits (853), Expect = e-112
Identities = 116/371 (31%), Positives = 197/371 (53%), Gaps = 29/371 (7%)
Query: 68 YQLFCYYS----LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CY++ Q P ++P LC+H++ +FA + +NN V + V Y+ +
Sbjct: 2 YKLVCYFTNWSQDRQEPGKFTPENIDPFLCSHLIYSFASI-ENNKVIIKDKSEVMLYQTI 60
Query: 124 VAMKLLNPNLKVLISV--TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
++K NP LK+L+S+ G+ F V + +RL F SI+ FL HN DG+D+ W
Sbjct: 61 NSLKTKNPKLKILLSIGGYLFGSKGFHPMVDSSTSRLEFINSIILFLRNHNFDGLDVSWI 120
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTLSG--------RFLMTVAVAAPGPIIDRAYDVPL 233
+P E F+ L+ +L R L+T V+A +ID +Y V
Sbjct: 121 YPD------QKENTHFTVLIHELAEAFQKDFTKSTKERLLLTAGVSAGRQMIDNSYQVEK 174
Query: 234 MGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPA 293
+ + +DF++++ +D+H + G N+PL D+G N ++V Y+++KG+P+
Sbjct: 175 LAKDLDFINLLSFDFHGSWEKPLITGHNSPLSKGWQDRGPSSYYNVEYAVGYWIHKGMPS 234
Query: 294 NKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQ----GFVDYIDTVAFLRDPDTIQ 349
K+++G+PTYGHS+TL + T G PA+ G G GF+ Y + FL+
Sbjct: 235 EKVVMGIPTYGHSFTLASA-ETTVGAPASGPGAAGPITESSGFLAYYEICQFLKGAKI-- 291
Query: 350 IFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY-HTSP 408
++ VPYA +G+QW+ +D+ S+ K ++L + L GAM+W ++ DD+ K + P
Sbjct: 292 TRLQDQQVPYAVKGNQWVGYDDVKSMETKVQFLKNLNLGGAMIWSIDMDDFTGKSCNQGP 351
Query: 409 YPLIKRIKTVL 419
YPL++ +K L
Sbjct: 352 YPLVQAVKRSL 362
>1wb0_A Chitinase 1, chitotriosidase 1; cyclopentapeptide inhibitors,
chitinase inhibitors, carbohyd metabolism, chitin
degradation, chitin-binding; HET: VR0 MEA; 1.65A {Homo
sapiens} SCOP: c.1.8.5 d.26.3.1 PDB: 1waw_A* 1guv_A
1lg2_A 1lg1_A 1lq0_A 1hki_A* 1hkj_A* 1hkm_A* 1hkk_A*
Length = 445
Score = 335 bits (860), Expect = e-112
Identities = 129/370 (34%), Positives = 201/370 (54%), Gaps = 26/370 (7%)
Query: 69 QLFCYYS----LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVV 124
+L CY++ Q + LP L+P+LCTH++ AFA ++ N+ ++ E + Y++
Sbjct: 2 KLVCYFTNWAQYRQGEARFLPKDLDPSLCTHLIYAFAGMT-NHQLSTTEWNDETLYQEFN 60
Query: 125 AMKLLNPNLKVLISV--TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182
+K +NP LK L+++ + GT F V+T NR F S + FL +++ DG+DLDWE+
Sbjct: 61 GLKKMNPKLKTLLAIGGWNFGTQKFTDMVATANNRQTFVNSAIRFLRKYSFDGLDLDWEY 120
Query: 183 PGWPGPNKSHEKRMFSKLLQQLKFTL--------SGRFLMTVAVAAPGPIIDRAYDVPLM 234
PG G + + +K F+ L+Q L R L++ AV A +D Y+V +
Sbjct: 121 PGSQG-SPAVDKERFTTLVQDLANAFQQEAQTSGKERLLLSAAVPAGQTYVDAGYEVDKI 179
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
+ +DFV++M YD+H + V G N+PLY + G SLN + +V +L KG PA+
Sbjct: 180 AQNLDFVNLMAYDFHG--SWEKVTGHNSPLYKRQEESGAAASLNVDAAVQQWLQKGTPAS 237
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQI 350
KL+LG+PTYG S+TL + T G PA G G G + Y + ++ +
Sbjct: 238 KLILGMPTYGRSFTLASSSDTRVGAPATGSGTPGPFTKEGGMLAYYEVCSW---KGATKQ 294
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY-HTSPY 409
++ VPY +R +QW+ FD+ S K YL KGL GAMVW L+ DD+A + Y
Sbjct: 295 RIQDQKVPYIFRDNQWVGFDDVESFKTKVSYLKQKGLGGAMVWALDLDDFAGFSCNQGRY 354
Query: 410 PLIKRIKTVL 419
PLI+ ++ L
Sbjct: 355 PLIQTLRQEL 364
>3fy1_A Amcase, TSA1902, acidic mammalian chitinase; structure,
crystallography, asthma,inhibitor, chitin degradation,
methylallosamidin; HET: NA1 NAA AMI; 1.70A {Homo
sapiens} PDB: 3fxy_A* 3rm4_A* 3rm8_A* 3rm9_A* 3rme_A*
2ybt_A* 2ybu_A*
Length = 395
Score = 332 bits (854), Expect = e-112
Identities = 125/371 (33%), Positives = 196/371 (52%), Gaps = 24/371 (6%)
Query: 68 YQLFCYYSLP----QNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
YQL CY++ +P +NP LCTH++ AFA + +NN + +E + V Y+
Sbjct: 1 YQLTCYFTNWAQYRPGLGRFMPDDINPCLCTHLIYAFAGM-QNNEITTIEWNDVTLYQAF 59
Query: 124 VAMKLLNPNLKVLISV--TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K N LK L+++ + GT F VST NR F S+++FL ++ DG+D DWE
Sbjct: 60 NGLKNKNSQLKTLLAIGGWNFGTAPFTAMVSTPENRQTFITSVIKFLRQYEFDGLDFDWE 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTL--------SGRFLMTVAVAAPGPIIDRAYDVPL 233
+PG G + +K +F+ L+Q+++ R ++T AVAA I Y++P
Sbjct: 120 YPGSRG-SPPQDKHLFTVLVQEMREAFEQEAKQINKPRLMVTAAVAAGISNIQSGYEIPQ 178
Query: 234 MGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPA 293
+ + +D++ +M YD H + G N+PLY TD G LN ++ +NY+ G PA
Sbjct: 179 LSQYLDYIHVMTYDLHG--SWEGYTGENSPLYKYPTDTGSNAYLNVDYVMNYWKDNGAPA 236
Query: 294 NKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG----NQGFVDYIDTVAFLRDPDTIQ 349
KL++G PTYGH++ L NP +T G P + G G G Y + FL++ T
Sbjct: 237 EKLIVGFPTYGHNFILSNPSNTGIGAPTSGAGPAGPYAKESGIWAYYEICTFLKNGATQG 296
Query: 350 IFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKY-HTSP 408
+D VPYAY+G+ W+ +DN S K ++L GAMVW ++ DD+ + +
Sbjct: 297 -WDAPQEVPYAYQGNVWVGYDNVKSFDIKAQWLKHNKFGGAMVWAIDLDDFTGTFCNQGK 355
Query: 409 YPLIKRIKTVL 419
+PLI +K L
Sbjct: 356 FPLISTLKKAL 366
>3alf_A Chitinase, class V; hydrolase; 1.20A {Nicotiana tabacum} PDB:
3alg_A*
Length = 353
Score = 323 bits (830), Expect = e-108
Identities = 75/335 (22%), Positives = 147/335 (43%), Gaps = 24/335 (7%)
Query: 79 NSSGLLPHQLNPNLCTHILLAFAQVS-KNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLI 137
SGL + ++ L TH+ AFA ++ + N + + + + ++ NP++K +
Sbjct: 11 KDSGLALNNIDSTLFTHLFCAFADLNPQLNQLIISPENQDSFRQFTSTVQRKNPSVKTFL 70
Query: 138 SV--TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKR 195
S+ A + + +R +F +S + + G+DLDWE+P +
Sbjct: 71 SIAGGRANSTAYGIMARQPNSRKSFIDSSIRLARQLGFHGLDLDWEYPLSAA-----DMT 125
Query: 196 MFSKLLQQLKFTL--------SGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYD 247
LL + + + L+T AV+ + Y V + R +D++++M YD
Sbjct: 126 NLGTLLNEWRTAINTEARNSGRAALLLTAAVSNSPRVNGLNYPVESLARNLDWINLMAYD 185
Query: 248 YHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSY 307
++ W +A L+ V ++ + +N ++ G+P KL+LG+P YG+++
Sbjct: 186 FYGPNWSPSQTNSHAQLFDPVNH------VSGSDGINAWIQAGVPTKKLVLGIPFYGYAW 239
Query: 308 TLVNPDSTDYGMPAADVGRIG--NQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQ 365
LVN + PAA +G + G + Y ++ + +++ Y Y G
Sbjct: 240 RLVNANIHGLRAPAAGKSNVGAVDDGSMTYNRIRDYIVESRATTVYNATIVGDYCYSGSN 299
Query: 366 WISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDY 400
WIS+D+ ++ K Y+ +GL G W + D
Sbjct: 300 WISYDDTQTVRNKVNYVKGRGLLGYFAWHVAGDQN 334
>2pi6_A Chitinase-3-like protein 1; complex, signaling protein; HET: NAG
MAN; 1.65A {Ovis aries} SCOP: c.1.8.5 d.26.3.1 PDB:
2dpe_A* 1sr0_A* 1zl1_A* 1zbk_A* 2dsu_A* 2dsv_A* 2dsw_A*
2fdm_A* 2g41_A* 2g8z_A* 2dt1_A* 1zbv_A* 1zu8_A* 2aos_A*
2b31_A* 1zbw_A* 2dt0_A* 2dsz_A* 2dt2_A* 2dt3_A* ...
Length = 361
Score = 322 bits (828), Expect = e-108
Identities = 124/373 (33%), Positives = 199/373 (53%), Gaps = 32/373 (8%)
Query: 68 YQLFCYYS----LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDV 123
Y+L CYY+ + P ++P LCTH++ FA +S NN + E + V Y +
Sbjct: 1 YKLICYYTSWSQYREGDGSCFPDAIDPFLCTHVIYTFANIS-NNEIDTWEWNDVTLYDTL 59
Query: 124 VAMKLLNPNLKVLISV--TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWE 181
+K NP LK L+SV + G F+K S +R F +S+ FL H DG+DL W
Sbjct: 60 NTLKNRNPKLKTLLSVGGWNFGPERFSKIASKTQSRRTFIKSVPPFLRTHGFDGLDLAWL 119
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTL-------SGRFLMTVAVAAPGPIIDRAYDVPLM 234
+PG +KR + L++++K + + L++ AV+A IDR YD+ +
Sbjct: 120 YPG------RRDKRHLTTLVKEMKAEFIREAQAGTEQLLLSAAVSAGKIAIDRGYDIAQI 173
Query: 235 GRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPAN 294
R +DF+S++ YD+H + +G ++PL+ D + NA+++V+Y L G PAN
Sbjct: 174 SRHLDFISLLTYDFHG--AWRQTVGHHSPLFRGNEDASS-RFSNADYAVSYMLRLGAPAN 230
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQ----GFVDYIDTVAFLRDPDTIQI 350
KL++G+PT+G S+TL + TD G P + G G G + Y + FL T
Sbjct: 231 KLVMGIPTFGRSFTLASS-KTDVGAPVSGPGIPGRFTKEKGILAYYEICDFLHGATTH-- 287
Query: 351 FDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKYH--TSP 408
++ VPYA +G+QW+++D++ S+ K YL ++ LAGAMVW L+ DD+ +
Sbjct: 288 RFRDQQVPYATKGNQWVAYDDQESVKNKARYLKNRQLAGAMVWALDLDDFRGTFCGQNLT 347
Query: 409 YPLIKRIKTVLTD 421
+PL +K VL +
Sbjct: 348 FPLTSAVKDVLAE 360
>3aqu_A AT4G19810; stress response, TIM barrel, hydrolase, chitin; HET:
FLC; 2.01A {Arabidopsis thaliana}
Length = 356
Score = 319 bits (820), Expect = e-107
Identities = 84/366 (22%), Positives = 145/366 (39%), Gaps = 28/366 (7%)
Query: 67 NYQLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVS-KNNTVAHLEPDHVKYYRDVVA 125
Y+ +S ++ +L TH+ AFA ++ + N V + K+
Sbjct: 3 TVVKASYW---FPASEFPVTDIDSSLFTHLFCAFADLNSQTNQVTVSSANQPKFSTFTQT 59
Query: 126 MKLLNPNLKVLISV--TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP 183
++ NP++K L+S+ A +A S +R +F +S + + G+DLDWE+P
Sbjct: 60 VQRRNPSVKTLLSIGGGIADKTAYASMASNPTSRKSFIDSSIRVARSYGFHGLDLDWEYP 119
Query: 184 GWPGPNKSHEKRMFSKLLQQLKFTL--------SGRFLMTVAVAAPGPIIDRAYDVPLMG 235
E F LL++ + + R L+ AV Y V +
Sbjct: 120 SSA-----TEMTNFGTLLREWRSAVVAEASSSGKPRLLLAAAVFYSNNYYSVLYPVSAVA 174
Query: 236 RLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANK 295
+D+V++M YD++ W V GP A L+ + + ++ G+PA K
Sbjct: 175 SSLDWVNLMAYDFYGPGWS-RVTGPPAALFDPSNAG-----PSGDAGTRSWIQAGLPAKK 228
Query: 296 LLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNT 355
+LG P YG+++ L N +S Y P I G + Y F+ D +++
Sbjct: 229 AVLGFPYYGYAWRLTNANSHSYYAPTTGAA-ISPDGSIGYGQIRKFIVDNGATTVYNSTV 287
Query: 356 SVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKYHT--SPYPLIK 413
Y Y G WI +D+ S+ K Y +GL G W + DD + +
Sbjct: 288 VGDYCYAGTNWIGYDDNQSIVTKVRYAKQRGLLGYFSWHVGADDNSGLSRAASQAWDATT 347
Query: 414 RIKTVL 419
+
Sbjct: 348 ATTRTI 353
>1jnd_A Imaginal DISC growth factor-2; IDGF, chitinase, insulin recep
heparin, hormone-growth factor complex; HET: NAG BMA
MAN; 1.30A {Drosophila melanogaster} SCOP: c.1.8.5
d.26.3.1 PDB: 1jne_A*
Length = 420
Score = 295 bits (757), Expect = 9e-97
Identities = 91/420 (21%), Positives = 163/420 (38%), Gaps = 69/420 (16%)
Query: 68 YQLFCYYS----LPQNSSGLLPHQLNPNL--CTHILLAFAQVSKNN-TVAHLEPDH---V 117
L CYY + LL L L C+H++ +A + N + +
Sbjct: 2 SNLVCYYDSSSYTREGLGKLLNPDLEIALQFCSHLVYGYAGLRGENLQAYSMNENLDIYK 61
Query: 118 KYYRDVVAMKLLNPNLKVLISV-------TDAGTGNFAKAVSTRANRLAFSESILEFLIE 170
+ +V ++K P+LKVL+SV D + ++ F S E +
Sbjct: 62 HQFSEVTSLKRKYPHLKVLLSVGGDHDIDPDHPNKYIDLLEGEKVRQIGFIRSAYELVKT 121
Query: 171 HNLDGIDLDWEFPGWPG-------------------------PNKSHEKRMFSKLLQQLK 205
+ DG+DL ++FP P+ + K F+ L++ +K
Sbjct: 122 YGFDGLDLAYQFPKNKPRKVHGDLGLAWKSIKKLFTGDFIVDPHAALHKEQFTALVRDVK 181
Query: 206 FTLSGR-FLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPL 264
+L FL+++ V +D+P + LVDFV++ +D+ + +AP+
Sbjct: 182 DSLRADGFLLSLTVLP-NVNSTWYFDIPALNGLVDFVNLATFDFLTPARNPEEADYSAPI 240
Query: 265 YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY---GMPA 321
Y + LNA++ V Y+L +G P+NK+ LG+ TYG+++ L +
Sbjct: 241 YHPDGSKDRLAHLNADFQVEYWLSQGFPSNKINLGVATYGNAWKLTKDSGLEGVPVVPET 300
Query: 322 ADVGRIGNQ----GFVDYIDTVAFLRDPDTIQIFDKNT------------------SVPY 359
+ G Q G + Y + L +P + + V
Sbjct: 301 SGPAPEGFQSQKPGLLSYAEICGKLSNPQNQFLKGNESPLRRVSDPTKRFGGIAYRPVDG 360
Query: 360 AYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKYHTSPYPLIKRIKTVL 419
W+S+D+ S + K Y K L G ++ L+ DD+ + YP+++ IK L
Sbjct: 361 QITEGIWVSYDDPDSASNKAAYARVKNLGGVALFDLSYDDFRGQCSGDKYPILRAIKYRL 420
>3qok_A Putative chitinase II; structural genomics, PSI-biology, midwest
center for structu genomics, MCSG, glycosyl hydrolases
family 18; 2.60A {Klebsiella pneumoniae subsp}
Length = 420
Score = 279 bits (716), Expect = 1e-90
Identities = 88/392 (22%), Positives = 154/392 (39%), Gaps = 57/392 (14%)
Query: 60 TSVVAVDNYQLFCYY---SLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDH 116
S ++ Y+ G +L+ TH+ +F + +
Sbjct: 18 ASALSAQPLMSVGYFNGGGDVTAGPGGDIDKLDVRQITHLNYSFGLIYNDEKDETNAALK 77
Query: 117 VKY--------------YRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSE 162
+ + A++ NP+LKVL+SV G F+ A +T +R F
Sbjct: 78 DPAHLHEIWLSPKVQADLQKLPALRKQNPDLKVLLSVGGWGARGFSGAAATAESRAVFIR 137
Query: 163 SILEFLIEHNLDGIDLDWEFPGWPGPNKSH----EKRMFSKLLQQLKFTLSGRFLMTVAV 218
S + + ++ LDGIDLDWEFP ++ F+ LL+ L+ + + L+T+AV
Sbjct: 138 SAQKIIQQYGLDGIDLDWEFPVNGAWGLVASQPADRDNFTALLKSLREAVGEQKLVTIAV 197
Query: 219 AAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKS-- 276
A DV + +++++++M YD N+ LY + +
Sbjct: 198 GANAESPKSWVDVKAVAPVLNYINLMTYDMAYG-T----QYFNSNLYDSSHWPTVAAADK 252
Query: 277 LNANWSVNYYLYKGIPANKLLLGLPTYGH----------SYTLVNPDSTDYGMPAADVGR 326
+A++ VN YL G+ +++ LG+ YG +T + + P +
Sbjct: 253 YSADFVVNNYLAAGLKPSQMNLGIGFYGRVPKRAVEPGIDWTKADAQNNPVTQPYFGPQQ 312
Query: 327 IGN----------QGFVDYIDTVAFLRDPDT---IQIFDKNTSVPYAYRGDQ------WI 367
I +V Y D V L + + +D VP+ +
Sbjct: 313 IALFASLGYDLSKDTYVKYNDIVGKLLNDPQKRFTEHWDDEAKVPWLSVQSAEGKPLFAL 372
Query: 368 SFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S++N S+A K +Y+ +KGLAGAM W DD
Sbjct: 373 SYENPRSVAIKADYIKAKGLAGAMFWEYGADD 404
>1ll7_A Chitinase 1; beta-alpha barrel, hydrolase; 2.00A {Coccidioides
immitis} SCOP: c.1.8.5 d.26.3.1 PDB: 1d2k_A 1ll4_A*
1ll6_A
Length = 392
Score = 267 bits (685), Expect = 3e-86
Identities = 94/387 (24%), Positives = 160/387 (41%), Gaps = 61/387 (15%)
Query: 68 YQLFCYY-SLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEP--DHVKYY---- 120
++ Y+ + G P L + THIL AFA + + V + D K+Y
Sbjct: 3 FRSVVYFVNWAIYGRGHNPQDLKADQFTHILYAFANIRPSGEVYLSDTWADTDKHYPGDK 62
Query: 121 ------------RDVVAMKLLNPNLKVLISVTDAG----TGNFAKAVSTRANRLAFSESI 164
+ + +K N NLK L+S+ G + NF ST R F+++
Sbjct: 63 WDEPGNNVYGCIKQMYLLKKNNRNLKTLLSI---GGWTYSPNFKTPASTEEGRKKFADTS 119
Query: 165 LEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTL---------SGRFLMT 215
L+ + + DGID+DW++P + F LL+ + L +FL+T
Sbjct: 120 LKLMKDLGFDGIDIDWQYPEDEK-----QANDFVLLLKACREALDAYSAKHPNGKKFLLT 174
Query: 216 VAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFK 275
+A A GP + M + +DF ++M YD+ W V G + ++P+ T
Sbjct: 175 IASPA-GPQNYNKLKLAEMDKYLDFWNLMAYDFSGS-W-DKVSGHMSNVFPSTTKPESTP 231
Query: 276 SLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGR-IGNQGFVD 334
+++ +V Y+ G+PANK++LG+P YG ++ + G VG G D
Sbjct: 232 -FSSDKAVKDYIKAGVPANKIVLGMPLYGRAFASTDG----IGTSFNGVGGGSWENGVWD 286
Query: 335 YIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQ--WISFDNEPSLAYKTEYLMSKGLAGAMV 392
Y D + ++ + Y+Y ++ IS+D K EY+ G+ G M
Sbjct: 287 YKD----MPQQGAQVTELEDIAASYSYDKNKRYLISYDTVKIAGKKAEYITKNGMGGGMW 342
Query: 393 WCLNTDDYAAKYHTSPYPLIKRIKTVL 419
W ++D T L+ + L
Sbjct: 343 WESSSDK------TGNESLVGTVVNGL 363
>3g6m_A Chitinase, crchi1; inhibitor, caffeine, glycosidase, hydrolas
hydrolase inhibitor complex; HET: CFF; 1.65A {Bionectria
ochroleuca} PDB: 3g6l_A*
Length = 406
Score = 266 bits (683), Expect = 6e-86
Identities = 91/398 (22%), Positives = 156/398 (39%), Gaps = 59/398 (14%)
Query: 56 TPSNTSVVAVDNYQLFCYY-SLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEP 114
S Y+ + P L + H+L +F + + TV +
Sbjct: 9 LASTDLSTRATGSINAVYFTNWGIYGRNFQPADLQASKILHVLYSFMNLRVDGTVYSGDT 68
Query: 115 --DHVKYY----------------RDVVAMKLLNPNLKVLISV---TDAGTGNFAKAVST 153
D K+Y + + +K N +LK+++S+ T + NF A ST
Sbjct: 69 YADLEKHYSDDSWNDIGTNAYGCVKQLYKLKKANRSLKIMLSIGGWT--WSTNFPAAAST 126
Query: 154 RANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTL----- 208
A R F+++ +EF+ + DGID+DWE+P + LLQ+++ L
Sbjct: 127 EATRATFAKTAVEFMKDWGFDGIDVDWEYPASET-----DANNMVLLLQRVRQELDSYSA 181
Query: 209 ----SGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPL 264
F +++A A + + +G ++D +++M YDY W V G L
Sbjct: 182 TYANGYHFQLSIAAPAGPSHYN-VLKLAQLGSVLDNINLMAYDYAGS-W-DSVSGHQTNL 238
Query: 265 YPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADV 324
YP+ ++ + +V+ Y+ G+PA+K++LG+P YG ++ + G P + +
Sbjct: 239 YPSTSNPSSTP-FSTKAAVDAYIAAGVPASKIILGMPIYGRAFVGTD----GPGKPYSTI 293
Query: 325 GR-IGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGD--QWISFDNEPSLAYKTEY 381
G G DY L I D Y+Y IS+D + K Y
Sbjct: 294 GEGSWESGIWDYKV----LPKAGATVITDSAAGATYSYDSSSRTMISYDTPDMVRTKVSY 349
Query: 382 LMSKGLAGAMVWCLNTDDYAAKYHTSPYPLIKRIKTVL 419
GL G+M W + D T LI + +
Sbjct: 350 AKGLGLGGSMFWEASADK------TGSDSLIGTALSSM 381
>1w9p_A Chitinase; peptide inhibitors, argifin, argadin, glycosidase,
hydrolase; 1.7A {Aspergillus fumigatus} SCOP: c.1.8.5
d.26.3.1 PDB: 1w9u_A* 1w9v_A* 2a3a_A* 2a3b_A* 2a3c_A*
2a3e_A* 2iuz_A* 3ch9_A 3chc_A* 3chd_A* 3che_A* 3chf_A*
1wno_A*
Length = 433
Score = 266 bits (683), Expect = 2e-85
Identities = 103/401 (25%), Positives = 160/401 (39%), Gaps = 62/401 (15%)
Query: 55 HTPSNTSVVAVDNYQLFCYYSL-PQNSSGLLPHQLNPNLCTHILLAFAQVSKNN------ 107
+ ++ A Y+ Y+ P L TH+L AFA V
Sbjct: 30 TSSTDLEARASSGYRSVVYFVNWAIYGRNHNPQDLPVERLTHVLYAFANVRPETGEVYMT 89
Query: 108 -----TVAHLEPDHVKY--------YRDVVAMKLLNPNLKVLISVTDAG----TGNFAKA 150
H D + + +K N NLKVL+S+ G + NFA A
Sbjct: 90 DSWADIEKHYPGDSWSDTGNNVYGCIKQLYLLKKQNRNLKVLLSI---GGWTYSPNFAPA 146
Query: 151 VSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTL-- 208
ST A R F+++ ++ L + DG+D+DWE+P + F LL++++ L
Sbjct: 147 ASTDAGRKNFAKTAVKLLQDLGFDGLDIDWEYPENDQ-----QANDFVLLLKEVRTALDS 201
Query: 209 -------SGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPN 261
FL+TVA A GP + + M + +DF ++M YDY + + G
Sbjct: 202 YSAANAGGQHFLLTVASPA-GPDKIKVLHLKDMDQQLDFWNLMAYDYAGS-F-SSLSGHQ 258
Query: 262 APLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPA 321
A +Y ++ N +++ Y G+PANK++LG+P YG S+ + G P
Sbjct: 259 ANVYNDTSNPLSTP-FNTQTALDLYRAGGVPANKIVLGMPLYGRSFANTD----GPGKPY 313
Query: 322 ADVGR-IGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGD--QWISFDNEPSLAYK 378
VG+ G DY L + + Y+Y IS+DN K
Sbjct: 314 NGVGQGSWENGVWDYKA----LPQAGATEHVLPDIMASYSYDATNKFLISYDNPQVANLK 369
Query: 379 TEYLMSKGLAGAMVWCLNTDDYAAKYHTSPYPLIKRIKTVL 419
+ Y+ S GL GAM W ++D T LI + L
Sbjct: 370 SGYIKSLGLGGAMWWDSSSDK------TGSDSLITTVVNAL 404
>1itx_A Chitinase A1, glycosyl hydrolase; alpha-beta (TIM) barrel; 1.10A
{Bacillus circulans} SCOP: c.1.8.5 d.26.3.1
Length = 419
Score = 261 bits (668), Expect = 2e-83
Identities = 102/410 (24%), Positives = 167/410 (40%), Gaps = 74/410 (18%)
Query: 59 NTSVVAVDNYQLFCYY-SLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHV 117
+ A D+Y++ YY S ++P THI AFA + N + +P
Sbjct: 3 PATAEAADSYKIVGYYPSWAAYGRNYNVADIDPTKVTHINYAFADICWNGIHGNPDPSGP 62
Query: 118 KY---------------------------------------------YRDVVAMKLLNPN 132
+ +K NPN
Sbjct: 63 NPVTWTCQNEKSQTINVPNGTIVLGDPWIDTGKTFAGDTWDQPIAGNINQLNKLKQTNPN 122
Query: 133 LKVLISV---TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPN 189
LK +ISV T + F+ +T A R F+ S ++FL ++N DG+DLDWE+P G +
Sbjct: 123 LKTIISVGGWT--WSNRFSDVAATAATREVFANSAVDFLRKYNFDGVDLDWEYPVSGGLD 180
Query: 190 KSH----EKRMFSKLLQQLKFTL------SGR-FLMTVAVAAPGPIIDRAYDVPLMGRLV 238
+ +K+ ++ LL +++ L G+ +L+T+A A ++ + +V
Sbjct: 181 GNSKRPEDKQNYTLLLSKIREKLDAAGAVDGKKYLLTIASGA-SATYAANTELAKIAAIV 239
Query: 239 DFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYF----KSLNANWSVNYYLYKGIPAN 294
D+++IM YD++ W + NAPL + N +L G+PA
Sbjct: 240 DWINIMTYDFNGA-WQ-KISAHNAPLNYDPAASAAGVPDANTFNVAAGAQGHLDAGVPAA 297
Query: 295 KLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGN--QGFVDYIDTVA-FLRDPDTIQIF 351
KL+LG+P YG + +G G D+ D A ++ + +
Sbjct: 298 KLVLGVPFYGRGWDGCAQAGNGQYQTCTGGSSVGTWEAGSFDFYDLEANYINKNGYTRYW 357
Query: 352 DKNTSVPYAYRGD--QWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
+ VPY Y ++IS+D+ S+ YKT Y+ SKGL GAM W L+ D
Sbjct: 358 NDTAKVPYLYNASNKRFISYDDAESVGYKTAYIKSKGLGGAMFWELSGDR 407
>1kfw_A Chitinase B; TIM barrel, hydrolase; 1.74A {Arthrobacter SP} SCOP:
c.1.8.5 d.26.3.1
Length = 435
Score = 249 bits (638), Expect = 7e-79
Identities = 103/441 (23%), Positives = 159/441 (36%), Gaps = 101/441 (22%)
Query: 64 AVDNYQLFCYYS---------LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEP 114
V+ Y+ Y++ + L THI +F ++ +
Sbjct: 5 TVNGYRNVGYFAQWGVYGRAFQAKQ----LDVSGTAKNLTHINYSFGNINNQTLTCFMAN 60
Query: 115 DHVKY---------------------------------------YRDVVAMKLLNPNLKV 135
+ + +K NP LKV
Sbjct: 61 KAQGTGPNGSDGAGDAWADFGMGYAADKSVSGKADTWDQPLAGSFNQLKQLKAKNPKLKV 120
Query: 136 LISV-TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNL----------------DGIDL 178
+IS+ + NF+KA +T A+R S ++ I+ NL DGID+
Sbjct: 121 MISLGGWTWSKNFSKAAATEASRQKLVSSCIDLYIKGNLPNFEGRGGAGAAAGIFDGIDI 180
Query: 179 DWEFPGWPG------PNKSHEKRMFSKLLQQLKFTLSG-------RFLMTVAVAA-PGPI 224
DWE+PG + +++ F LL + + L +++++ + A P I
Sbjct: 181 DWEWPGTNSGLAGNGVDTVNDRANFKALLAEFRKQLDAYGSTNNKKYVLSAFLPANPADI 240
Query: 225 IDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTD-QGYFKSLNANWSV 283
+D P + +DF SI GYD H W + G A LY D + K +A+ +V
Sbjct: 241 DAGGWDDPANFKSLDFGSIQGYDLHGA-WNPTLTGHQANLYDDPADPRAPSKKFSADKAV 299
Query: 284 NYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRI-GNQGFVDYIDTVAFL 342
YL GI +L LGL YG +T S PA D DY L
Sbjct: 300 KKYLAAGIDPKQLGLGLAAYGRGWTGAKNVSP--WGPATDGAPGTYETANEDYDK----L 353
Query: 343 RDPDTIQIFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAA 402
+ T +D T + Y G QW S+DN + KT+Y++SKGL G M W L+ D
Sbjct: 354 KTLGT-DHYDAATGSAWRYDGTQWWSYDNIATTKQKTDYIVSKGLGGGMWWELSGDR--- 409
Query: 403 KYHTSPYPLIKRIKTVLTDDG 423
L+ +
Sbjct: 410 -----NGELVGAMSDKFRAAA 425
>3oa5_A CHI1; TIM barrel, hydrolase; HET: 2PE; 1.74A {Yersinia} PDB: 4a5q_A
Length = 574
Score = 253 bits (647), Expect = 1e-78
Identities = 67/366 (18%), Positives = 127/366 (34%), Gaps = 36/366 (9%)
Query: 84 LPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVK-YYRDVVAMKLLNPNLKVLISVTDA 142
+P + + I F + + + K + + L+ +S+
Sbjct: 188 IPVDPDGAVLASINCGFTKWEAGDANERYNQEKAKGLLGGFRLLHEADKELEFSLSI--- 244
Query: 143 G----TGNFAKAVSTRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPNKSH---EK 194
G +G F++ R F E I +F + +D+DWE+PG G + +
Sbjct: 245 GGWSMSGLFSEIAKDEILRTNFVEGIKDFFQRFPMFSHLDIDWEYPGSIGAGNPNSPDDG 304
Query: 195 RMFSKLLQQLKFTLSGR-FLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIW 253
F+ L+QQ+ +++A +A ID A LM V +++M YD+ +
Sbjct: 305 ANFAILIQQITDAKISNLKGISIASSADPAKIDAANIPALMDAGVTGINLMTYDFFTL-G 363
Query: 254 YLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLY-KGIPANKLLLGLPTYGHSYTLVNP 312
L + +Y +D + + +V + + K + + +G Y +
Sbjct: 364 D-GKLSHHTNIYRDPSDVY--SKYSIDDAVTHLIDEKKVDPKAIFIGYAGYTRNAKNATI 420
Query: 313 DSTDYGMPAADVGRIGNQGFV---------------DYIDTVAFLRDPDTIQIFDKNTSV 357
++ A + Y+D + DK
Sbjct: 421 TTSIPSEEALKGTYTDANQTLGSFEYSVLEWTDIICHYMDFEKGEGRNGYKLVHDKVAKA 480
Query: 358 PYAYR--GDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKYHTSPYPLIKRI 415
Y Y +IS D S+ K Y+ KGL G +W + D+ + + L +RI
Sbjct: 481 DYLYSEATKVFISLDTPRSVRDKGRYVKDKGLGGLFIWSGDQDNGILT-NAAHEGLKRRI 539
Query: 416 KTVLTD 421
K + D
Sbjct: 540 KNKVID 545
>1goi_A Chitinase B; chitin degradation, hydrolase, glycosidase; 1.45A
{Serratia marcescens} SCOP: b.72.2.1 c.1.8.5 d.26.3.1
PDB: 1o6i_A* 1e6r_A* 1e15_A 1gpf_A* 1ur8_A* 1w1p_A*
1w1t_A* 1w1v_A* 1w1y_A* 1e6p_A 1e6n_A 1h0g_A* 1h0i_A*
1ogb_A 1ogg_A* 1e6z_A* 1ur9_A*
Length = 499
Score = 247 bits (631), Expect = 4e-77
Identities = 75/376 (19%), Positives = 145/376 (38%), Gaps = 75/376 (19%)
Query: 91 NLCTHILLAFAQVSKNNTVAHLEP--DHVKY--YRDVVAMKLLNPNLKVLISV------- 139
THI +F ++ N A D + A+K NP+L+++ S+
Sbjct: 42 KQLTHINFSFLDINSNLECAWDPATNDAKARDVVNRLTALKAHNPSLRIMFSIGGWYYSN 101
Query: 140 -TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFS 198
N+ AV T A+R F++S + + ++ DG+++DWE+P + E F
Sbjct: 102 DLGVSHANYVNAVKTPASRAKFAQSCVRIMKDYGFDGVNIDWEYPQ------AAEVDGFI 155
Query: 199 KLLQQLKFTL----------SGRFLMTVAVAAPGPIIDRAY-DVPLMGRLVDFVSIMGYD 247
LQ+++ L + + +T+A A + R Y + + +D++++M YD
Sbjct: 156 AALQEIRTLLNQQTITDGRQALPYQLTIAGAGGAFFLSRYYSKLAQIVAPLDYINLMTYD 215
Query: 248 YHSYIWYLPVLGPNAPLYPAVTDQGYFKS----------------------LNANWSVNY 285
W V A L+ ++ + L + +V
Sbjct: 216 LAGP-WE-KVTNHQAALFGDAAGPTFYNALREANLGWSWEELTRAFPSPFSLTVDAAVQQ 273
Query: 286 YLY-KGIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGR------------------ 326
+L +G+P+ K+++G+P YG ++ V+ + + G
Sbjct: 274 HLMMEGVPSAKIVMGVPFYGRAFKGVSGGNGGQYSSHSTPGEDPYPSTDYWLVGCEECVR 333
Query: 327 IGNQGFVDYIDTVAFLRDPDTIQI-FDKNTSVPYAYRGD--QWISFDNEPSLAYKTEYLM 383
+ Y L+ Q ++ T PY Y ++++D+ S YK +Y+
Sbjct: 334 DKDPRIASYRQLEQMLQGNYGYQRLWNDKTKTPYLYHAQNGLFVTYDDAESFKYKAKYIK 393
Query: 384 SKGLAGAMVWCLNTDD 399
+ L G M W L D+
Sbjct: 394 QQQLGGVMFWHLGQDN 409
>3fnd_A Chitinase; TIM-barrel, structural genomics, PSI-2, P structure
initiative, NEW YORK SGX research center for STRU
genomics, nysgxrc; 1.90A {Bacteroides thetaiotaomicron}
PDB: 3co4_A
Length = 312
Score = 240 bits (614), Expect = 1e-76
Identities = 69/356 (19%), Positives = 124/356 (34%), Gaps = 61/356 (17%)
Query: 72 CYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNP 131
Y +L L + THI +FA+V + T+ K V
Sbjct: 8 GYLALDDWEFESLFPTIEWKYLTHINASFARVKADGTLNINPVR--KRIESVRE-TAHKH 64
Query: 132 NLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKS 191
N+K+LIS+ G F A++ R + I+ F E+ LDG D+D+E
Sbjct: 65 NVKILISLAKNSPGEFTTAINDPKARKELIQQIIAFTKEYKLDGFDIDYEEYD------- 117
Query: 192 HEKRMFSKLLQQLKFTLSG---RFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDY 248
+ + F LL + LMT AV + ++ + D++++M YD
Sbjct: 118 NWDKNFPSLLVFARGLYLAKEKNMLMTCAVNSRWLNYGTEWE-----QYFDYINLMSYDR 172
Query: 249 HSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYK-GIPANKLLLGLPTYGHSY 307
++ P +A + + Y+ + +K++ GLP YG+S+
Sbjct: 173 GAF-TDKP--VQHASYD------------DFVKDLKYWNEQCRASKSKIVGGLPFYGYSW 217
Query: 308 TLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQWI 367
DV I G + ++ A
Sbjct: 218 EESLQG------AVDDVRGIRYSGILKHLGNEA------------------ADKDNIGKT 253
Query: 368 SFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYAAKYHTSPYPLIKRIKTVLTDDG 423
++ P++A K +++ AG M+W L D + LI + + ++G
Sbjct: 254 YYNGRPTIANKCKFIKENDYAGVMIWQLFQDAHND---NYDLKLINVVGREMMEEG 306
>1edq_A Chitinase A; beta-alpha (TIM) barrel, hydrolase; 1.55A {Serratia
marcescens} SCOP: b.1.18.2 c.1.8.5 d.26.3.1 PDB: 1ffq_A*
1ffr_A* 1ehn_A* 1ctn_A 1k9t_A* 1eib_A* 2wlz_A* 2wly_A*
2wm0_A* 2wk2_A* 1nh6_A* 1x6l_A 1rd6_A 1x6n_A*
Length = 540
Score = 245 bits (626), Expect = 7e-76
Identities = 79/408 (19%), Positives = 142/408 (34%), Gaps = 72/408 (17%)
Query: 56 TPSNTSVVAVDNYQLFCYYSL-PQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEP 114
N + Y+ ++ TH+L F + N +
Sbjct: 123 LEKNKPYKQNSGKVVGSYFVEWGVYGRNFTVDKIPAQNLTHLLYGFIPICGGNGINDSLK 182
Query: 115 DHVKY------------------------------------------YRDVVAMKLLNPN 132
+ + ++A+K +P+
Sbjct: 183 EIEGSFQALQRSCQGREDFKVSIHDPFAALQKAQKGVTAWDDPYKGNFGQLMALKQAHPD 242
Query: 133 LKVLISVTDAG----TGNFAKAVSTRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPG 187
LK+L S+ G + F + + R F S+ EFL DG+D+DWEFPG G
Sbjct: 243 LKILPSI---GGWTLSDPFF-FMGDKVKRDRFVGSVKEFLQTWKFFDGVDIDWEFPGGKG 298
Query: 188 PNKSH----EKRMFSKLLQQLKFTLSG-------RFLMTVAVAAPGPIIDRAYDVPLMGR 236
N + + + L+++L+ L ++ +T A++A ID +
Sbjct: 299 ANPNLGSPQDGETYVLLMKELRAMLDQLSVETGRKYELTSAISAGKDKID-KVAYNVAQN 357
Query: 237 LVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKL 296
+D + +M YD++ + L LG L + VN L +G+ K+
Sbjct: 358 SMDHIFLMSYDFYGA-FDLKNLGHQTALNAPAWKPDT--AYTTVNGVNALLAQGVKPGKI 414
Query: 297 LLGLPTYGHSYTLVNPDSTDYGMPAADVGRIG---NQGFVDYIDTVAFLRDPDTIQIFDK 353
++G YG +T VN + G + G VDY + +D
Sbjct: 415 VVGTAMYGRGWTGVNGYQNNIPFTGTATGPVKGTWENGIVDYRQIAGQFMSGEWQYTYDA 474
Query: 354 NTSVPYAYRGD--QWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
PY ++ I+FD+ S+ K +Y++ K L G W ++ D+
Sbjct: 475 TAEAPYVFKPSTGDLITFDDARSVQAKGKYVLDKQLGGLFSWEIDADN 522
>3arx_A Chitinase A; TIM barrel, inhibitor complex, glycosidase, hydrolase,
hydro hydrolase inhibitor complex; HET: POY; 1.16A
{Vibrio harveyi} PDB: 3aro_A* 3arp_A* 3arr_A* 3arv_A*
3arw_A* 3arq_A* 3ary_A* 3arz_A* 3b8s_A 3b9e_A 3b9a_A*
3b9d_A 3as2_A* 3ars_A* 3art_A* 3as0_A* 3as1_A* 3aru_A*
3as3_A*
Length = 584
Score = 223 bits (570), Expect = 2e-67
Identities = 92/476 (19%), Positives = 160/476 (33%), Gaps = 101/476 (21%)
Query: 17 FTFKVDTVPNLDTSPNRAVSYLQATYTYKNKPYHYKDLHTPSNTSVVAVDNYQLFCYY-S 75
+ +++ S + V A + ++ P+N S + + Y+
Sbjct: 88 YQMEIEACDATGCSKSAPVEITIADTDGSHLKPLTMNV-DPNNKSYNTDPSIVMGTYFVE 146
Query: 76 LPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEP--------------------- 114
+ + THIL F + N
Sbjct: 147 WGIYGRDYTVDNMPVDNLTHILYGFIPICGPNESVKSVGGNSFNALQTACRGVNDYEVVI 206
Query: 115 -----DHVKYYRDV---------------VAMKLLNPNLKVLISVTDAG----TGNFAKA 150
+ K + +A+K NP+LK++ S+ G + F
Sbjct: 207 HDPWAAYQKSFPQAGHEYSTPIKGNYAMLMALKQRNPDLKIIPSI---GGWTLSDPFYDF 263
Query: 151 VSTRANRLAFSESILEFLIEHNL-DGIDLDWEFPGWPGPN-----KSHEKRMFSKLLQQL 204
V NR F S+ +FL DG+D+DWEFPG G ++ + L+++L
Sbjct: 264 VDK-KNRDTFVASVKKFLKTWKFYDGVDIDWEFPGGGGAAADKGDPVNDGPAYIALMREL 322
Query: 205 KFTL-------SGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPV 257
+ L + +T A+ I+ D + +D++ M YD++ W V
Sbjct: 323 RVMLDELEAETGRTYELTSAIGVGYDKIE-DVDYADAVQYMDYIFAMTYDFYGG-WN-NV 379
Query: 258 LGPNAPLYP---------------AVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPT 302
G LY + + A+ + L +G+PANKL+LG
Sbjct: 380 PGHQTALYCGSFMRPGQCDGGGVDENGEPYKGPAYTADNGIQLLLAQGVPANKLVLGTAM 439
Query: 303 YGHSYTLVNPDSTDYGMPAADVGRIGN-----------QGFVDYIDTVAFLRDPDTIQI- 350
YG + V PD+ G G +DY +F+ + I
Sbjct: 440 YGRGWEGVTPDTLTDPNDPMTGTATGKLKGSTAQGVWEDGVIDYKGIKSFMLGANNTGIN 499
Query: 351 -----FDKNTSVPYAYRGD--QWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
+D P+ + + I+FD+ S+ K Y S GLAG W ++ D+
Sbjct: 500 GFEYGYDAQAEAPWVWNRSTGELITFDDHRSVLAKGNYAKSLGLAGLFSWEIDADN 555
>3cz8_A Putative sporulation-specific glycosylase YDHD; structural
genomics, uncharacterized protein, protein struct
initiative, PSI-2; 2.20A {Bacillus subtilis subsp}
Length = 319
Score = 197 bits (502), Expect = 5e-60
Identities = 54/327 (16%), Positives = 119/327 (36%), Gaps = 50/327 (15%)
Query: 84 LPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAG 143
L + P + + + ++ N +A+ D + L + ++T G
Sbjct: 25 LINDYAPYSSSISIFEY-HIAPNGDIANQLNDAAAIET---TWQRRVTPLATITNLTSGG 80
Query: 144 TGN--FAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLL 201
+ ++ R +I + + G+ +D+E ++ +F+ L
Sbjct: 81 FSTEIVHQVLNNPTARTNLVNNIYDLVSTRGYGGVTIDFEQVSAA------DRDLFTGFL 134
Query: 202 QQLKFTL-SGRFLMTVAVAAP---GPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPV 257
+QL+ L +G +++T+AV A R YD +G +V+++ IM YD+H + P
Sbjct: 135 RQLRDRLQAGGYVLTIAVPAKTSDNIPWLRGYDYGGIGAVVNYMFIMAYDWH-HAGSEP- 192
Query: 258 LGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
GP AP+ ++ + + +P+ K+++G+P YG+ + + T
Sbjct: 193 -GPVAPIT------------EIRRTIEFTI-AQVPSRKIIIGVPLYGYDWIIPYQPGT-- 236
Query: 318 GMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGDQ-----WISFDNE 372
+ + + + P+ DQ + F+
Sbjct: 237 -----------VASAISNQNAIERAMRYQAPIQYSAEYQSPFFRYSDQQGRTHEVWFEGV 285
Query: 373 PSLAYKTEYLMSKGLAGAMVWCLNTDD 399
S++ K + + L W L +
Sbjct: 286 RSMSRKMQIVREYRLQAIGAWQLTLAE 312
>3sim_A Protein, family 18 chitinase; family 18 plant chitinase, TIM
barrel, chitin binding, glyco hydrolase, hydrolase;
2.10A {Crocus vernus}
Length = 275
Score = 176 bits (447), Expect = 2e-52
Identities = 51/287 (17%), Positives = 103/287 (35%), Gaps = 29/287 (10%)
Query: 70 LFCYYSL--PQNSSGLLPHQLNPNLCT-HILLAFA--------QVSKNNTVAHLEPDHVK 118
LF Y + +NP++ +L+FA S N +
Sbjct: 2 LFVEYIGYPLFSGVKFSDVPINPHITKFQFVLSFAVDYTASSPHTSTNGKFNVFWDSSIL 61
Query: 119 YYRDVVAMKLLNPNLKVLISV---TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDG 175
+ A+K +PN++V +S+ + +A S + S+ + +NLDG
Sbjct: 62 GPDQISAIKSSHPNVRVAVSLGGASVGSNTVQFQAASVDSWVSNAVTSLTRIIQRYNLDG 121
Query: 176 IDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMG 235
ID+D+E ++ +K F++ + +L TL +++ A +P P +D Y + L
Sbjct: 122 IDIDYEHF------QNTDKNTFAECIGRLITTLKKNGVISFASISPFPSVD-EYYLALFN 174
Query: 236 RLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANK 295
+ ++ + Y + +Y + Y + +V G
Sbjct: 175 EYKNAINHINYQFKAY-DSSTSVDKFLGYYNNAASK------YKGGNVLISFSTGPHPGG 227
Query: 296 LLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFL 342
L + + + +L N +G+ + F + AFL
Sbjct: 228 LPVDKGFFDAATSLKNKGKL-HGIAVWTADTSKSSDFRYEEEAQAFL 273
>3bxw_B Chitinase domain-containing protein 1; TIM barrel, lysosome,
secreted, hydrolase; 2.70A {Homo sapiens}
Length = 393
Score = 160 bits (405), Expect = 4e-45
Identities = 56/348 (16%), Positives = 109/348 (31%), Gaps = 54/348 (15%)
Query: 67 NYQLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNT-VAHLEPDHVKYYRDVVA 125
+ Y + P NS G ++ + T I + Q+ + + + H + A
Sbjct: 78 AGDVLGYVT-PWNSHGYDVTKVFGSKFTQISPVWLQLKRRGREMFEVTGLHDVDQGWMRA 136
Query: 126 MKLLNPNLKVLISVTDAGTG--NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFP 183
++ L ++ + +F + + S+++++ + DG ++
Sbjct: 137 VRKHAKGLHIVPRLLFEDWTYDDFRNVLDSEDEIEELSKTVVQVAKNQHFDGFVVEVWNQ 196
Query: 184 GWPGPNKSHEKRMFSKLLQQLKFTL-SGRFLMTVAVAA------PGPIIDRAYDVPLMGR 236
++ +L L L R L + + + + +
Sbjct: 197 LLS-----QKRVGLIHMLTHLAEALHQARLLALLVIPPAITPGTDQLGMFTHKEFEQLAP 251
Query: 237 LVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKL 296
++D S+M YDY + + P GPNAPL V K +K+
Sbjct: 252 VLDGFSLMTYDYSTA--HQP--GPNAPLS------------WVRACVQVLDPKSKWRSKI 295
Query: 297 LLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTS 356
LLGL YG Y + V + L+D ++D S
Sbjct: 296 LLGLNFYGMDYATSK----------------DAREPVVGARYIQTLKDHRPRMVWDSQAS 339
Query: 357 VPYAY-----RGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDD 399
+ G + + SL + E G+ G +W L
Sbjct: 340 EHFFEYKKSRSGRHVVFYPTLKSLQVRLELARELGV-GVSIWELGQGL 386
>3n12_A Chitinase A, chinctu2; zinc atoms, complex, hydrolase; 1.20A
{Bacillus cereus} PDB: 3n11_A 3n15_A* 3n13_A* 3n17_A*
3n18_A* 3n1a_A*
Length = 333
Score = 126 bits (317), Expect = 4e-33
Identities = 46/351 (13%), Positives = 108/351 (30%), Gaps = 66/351 (18%)
Query: 70 LFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDH---VKYYRDVVAM 126
L Y+ N +G++ + I ++F + + + P + + D+ +
Sbjct: 9 LVGYWHNFDNGTGIIKLKDVSPKWDVINVSFGETGGDRSTVEFSPVYGTDADFKSDISYL 68
Query: 127 KLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWP 186
K + KV++S+ G N + A + F SI + ++ DGID+D E +
Sbjct: 69 K--SKGKKVVLSI---GGQNGVVLLPDNAAKDRFINSIQSLIDKYGFDGIDIDLESGIYL 123
Query: 187 G-------PNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAP----------GPIIDRAY 229
+ + ++ + FL+++A
Sbjct: 124 NGNDTNFKNPTTPQIVNLISAIRTISDHYGPDFLLSMAPETAYVQGGYSAYGSIWGAYLP 183
Query: 230 DVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYK 289
+ + + ++ + Y+ S I V ++
Sbjct: 184 IIYGVKDKLTYIHVQHYNAGSGIGMDGNNYNQGTADYEVAMADMLLHGFPVGGNANNIFP 243
Query: 290 GIPANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQ 349
+ ++++++GLP AA + G++
Sbjct: 244 ALRSDQVMIGLPAAP---------------AAA-----PSGGYISP-------------- 269
Query: 350 IFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDY 400
+ ++ Y + + F + L+ ++ Y G M W +N D
Sbjct: 270 -TEMKKALNYII---KGVPFGGKYKLSNQSGY---PAFRGLMSWSINWDAK 313
>1edt_A Endo-beta-N-acetylglucosaminidase H, endo H; hydrolase
(glucosidase); 1.90A {Streptomyces plicatus} SCOP:
c.1.8.5 PDB: 1c90_A 1c8x_A 1c91_A 1c3f_A 1c92_A 1c8y_A
1c93_A
Length = 271
Score = 117 bits (293), Expect = 2e-30
Identities = 42/266 (15%), Positives = 82/266 (30%), Gaps = 19/266 (7%)
Query: 68 YQLFCYYSL----PQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTV----AHLEPD--HV 117
Y + N N ++ A ++ + H + V
Sbjct: 9 PTSVAYVEVNNNSMLNVGKYTLADGGGNAFDVAVIFAANINYDTGTKTAYLHFNENVQRV 68
Query: 118 KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGID 177
L +KVL+SV G ++ AF++ + + + ++ LDG+D
Sbjct: 69 LDNAVTQIRPLQQQGIKVLLSVLGNHQGAGFANFPSQQAASAFAKQLSDAVAKYGLDGVD 128
Query: 178 LDWEFPGWPGPNKSHEKRM-FSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGR 236
D E+ + + F L+ L+ + ++++ P +Y +
Sbjct: 129 FDDEYAEYGNNGTAQPNDSSFVHLVTALRANM-PDKIISLYNIGP-AASRLSYGGVDVSD 186
Query: 237 LVDFVSIMGYDYHSYIWYLPVLG-PNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANK 295
D+ Y+ W +P + P A L PA + G + +G
Sbjct: 187 KFDY---AWNPYYGT-WQVPGIALPKAQLSPAAVEIGRTSRSTVADLARRTVDEG-YGVY 241
Query: 296 LLLGLPTYGHSYTLVNPDSTDYGMPA 321
L L + + YG A
Sbjct: 242 LTYNLDGGDRTADVSAFTRELYGSEA 267
>3ian_A Chitinase; structural genomics, hydrolase, glycosidase, PSI-2,
protein structure initiative; 1.75A {Lactococcus lactis
subsp}
Length = 321
Score = 99.3 bits (247), Expect = 2e-23
Identities = 38/256 (14%), Positives = 82/256 (32%), Gaps = 17/256 (6%)
Query: 77 PQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDH---VKYYRDVVAMKLLNPNL 133
SS I ++F + + T+ +P + ++ ++ +
Sbjct: 23 KGGSSADFNLSSTQEGYNVINVSFMKTPEGQTLPTFKPYNKTDTEFRAEISKLN--AEGK 80
Query: 134 KVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHE 193
VLI++ + S ++ F I+ + + DG+D+D E +
Sbjct: 81 SVLIAL-GGADAHIELKKSQESD---FVNEIIRLVDTYGFDGLDIDLEQAAIEAADNQTV 136
Query: 194 KRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAY--DVPLMGRLVDFVSIMGYDYHSY 251
K ++ F++T+A P Y + + DF++ Y+
Sbjct: 137 IPSALKKVKDHYRKDGKNFMITMAPEFPYLTSSGKYAPYINNLDSYYDFINPQYYNQGGD 196
Query: 252 IWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVN 311
++ L + + L + IPA+K ++GLP+ +
Sbjct: 197 GFWDSDLNMWISQSNDEKKEDFLYGLTQRLVTGTDGFIKIPASKFVIGLPSNNDA----- 251
Query: 312 PDSTDYGMPAADVGRI 327
+T Y V
Sbjct: 252 -AATGYVKDPNAVKNA 266
>1nar_A Narbonin; plant SEED protein; 1.80A {Vicia narbonensis} SCOP:
c.1.8.5
Length = 290
Score = 96.3 bits (239), Expect = 1e-22
Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 38/228 (16%)
Query: 89 NPNLCTHILLAFA-----QVSKNNTVAHLEPDHVKYYRD-VVAMKLLNPNLKVLISVTDA 142
L H +L FA + K D + + V +K +P +KV+IS+
Sbjct: 28 TETLEFHYILGFAIESYYESGKGTGTFEESWDVELFGPEKVKNLKRRHPEVKVVISIGGR 87
Query: 143 GTGNFAKAVSTRANRLAFSESILEFLIEHN------LDGIDLDWEFPGWPGPNKSHEKRM 196
G ES+ + +++ +DGID+ +E + +
Sbjct: 88 GVNTPFDPAEENVWVSNAKESLKLIIQKYSDDSGNLIDGIDIHYEHIR----SDEPFATL 143
Query: 197 FSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLP 256
+L+ +LK + V AP + ++ L D+++ + Y + +
Sbjct: 144 MGQLITELK--KDDDLNINVVSIAPSE-NNSSHYQKLYNAKKDYINWVDYQFSNQ----- 195
Query: 257 VLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYG 304
V+ F + + +Y +K+L G T
Sbjct: 196 --------QKPVSTDDAFVEIFKSLEKDY------HPHKVLPGFSTDP 229
>2ebn_A Endo-beta-N-acetylglucosaminidase F1; hydrolase(glucosidase); 2.00A
{Elizabethkingia meningoseptica} SCOP: c.1.8.5
Length = 289
Score = 95.5 bits (237), Expect = 2e-22
Identities = 47/275 (17%), Positives = 89/275 (32%), Gaps = 28/275 (10%)
Query: 67 NYQLFCYYSL----PQNSSGLLPHQLNPNLCTHILLAFAQV----SKNNTVAHLEPD--H 116
N +LF + + P N+ L ++L A + + + P+ H
Sbjct: 9 NIKLFSFTEVNDTNPLNNLNFTLKNSGKPLVDMVVLFSANINYDAANDKVFVSNNPNVQH 68
Query: 117 VKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGI 176
+ R L + +KV++S+ A + A AF++ + +NLDG+
Sbjct: 69 LLTNRAKYLKPLQDKGIKVILSILGNHDR-SGIANLSTARAKAFAQELKNTCDLYNLDGV 127
Query: 177 DLDWEFPGWPGPN----KSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVP 232
D E+ + P + ++L + K + L+TV V + A D
Sbjct: 128 FFDDEYSAYQTPPPSGFVTPSNNAAARLAYETKQAM-PNKLVTVYVYSRTSSFPTAVDGV 186
Query: 233 LMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIP 292
G VD+ +DY + L P V + ++ Y
Sbjct: 187 NAGSYVDY---AIHDYGGS-YDLATNYPGLAKSGMV-------MSSQEFNQGRYATAQAL 235
Query: 293 ANKLLLGLPTYGHSYTLVNPDSTDYGMPAADVGRI 327
N + G + + + S + I
Sbjct: 236 RNIVTKGYGGHM-IFAMDPNRSNFTSGQLPALKLI 269
>2y8v_A CHIC, class III chitinase, putative; afchic, hydrolase; 1.99A
{Aspergillus fumigatus}
Length = 290
Score = 92.3 bits (229), Expect = 3e-21
Identities = 54/276 (19%), Positives = 98/276 (35%), Gaps = 53/276 (19%)
Query: 66 DNYQLFCYYSLPQNSS-------GLLPHQLNPNLCTHILLAFAQVSKNNTVAHL---EPD 115
++ ++ CY+ Q +LP N THI++A ++++ L PD
Sbjct: 11 EHRRVICYH---QTLCPNRGDYVSVLPLVKNNTGVTHIIIAAFHLNEDPGHITLNDDPPD 67
Query: 116 HVKY---YRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHN 172
H Y + +V +K +KV+ + A G++ + + + +L + H
Sbjct: 68 HEMYNPLWAEVPVLK--RSGVKVMGMLGGAAQGSYRCLDGDQEKFERYYQPLLAMVRRHQ 125
Query: 173 LDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVP 232
LDG+DLD E +L+ +LK L F++T+A A +
Sbjct: 126 LDGLDLDVEEEMSLPG--------IIRLIDRLKLDLGDDFIITLAPVAAALL---GIGNL 174
Query: 233 LMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIP 292
G S I + NA Y + A + +G
Sbjct: 175 SGFDYRQLEQQRG----SKISWY-----NAQFYNGWGLAEDPRMYAAIVA------QGWS 219
Query: 293 ANKLLLGLPTYGHSYTLVNPDSTDYG-MPAADVGRI 327
+++ GL T NP + G +P +G +
Sbjct: 220 PQRVVYGLLT--------NPGNGSQGYVPRERIGPV 247
>3ebv_A Chinitase A; chitinase A, CHIA, glycosidase, structural genomics,
unknown function, hydrolase, PSI-2, protein structure
initiative; 1.50A {Streptomyces coelicolor}
Length = 302
Score = 74.9 bits (184), Expect = 3e-15
Identities = 50/284 (17%), Positives = 97/284 (34%), Gaps = 56/284 (19%)
Query: 58 SNTSVVAVDNYQLFCYYSLPQNSSG--LLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPD 115
S V Y+ ++G + P+ I +AFA + D
Sbjct: 2 SLKHAVTG-------YW--QNFNNGATVQKISDVPSAYDIIAVAFADATTTPGAVTFNLD 52
Query: 116 H--------VKYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEF 167
++ DV A + KV+ISV G +V++ A+ F+ S+
Sbjct: 53 SAGLGGYTVDQFKADVRAKQ--AAGKKVIISV---GGEKGTVSVNSSASATNFANSVYSV 107
Query: 168 LIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGP--II 225
+ E+ DG+D+D E G N ++ ++ L+ L ++T+A
Sbjct: 108 MREYGFDGVDIDLE----NGLNPTY----MTQALRALSAKAGPDMILTMAPQTIDMQSTQ 159
Query: 226 DRAYDVPL-MGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVN 284
+ L + ++ V++ Y+ + LG + +Y T
Sbjct: 160 GGYFQTALNVKDILTVVNMQYYNSGTM------LGCDGKVYAQGTVD------FLTALAC 207
Query: 285 YYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDYG-MPAADVGRI 327
L G+ +++ LGLP + + G + + V
Sbjct: 208 IQLEGGLAPSQVGLGLPA--------STRAAGGGYVSPSVVNAA 243
>3poh_A Endo-beta-N-acetylglucosaminidase F1; TIM barrel, structural
genomics, joint center for structural genomics, JCSG;
1.55A {Bacteroides thetaiotaomicron}
Length = 451
Score = 69.2 bits (168), Expect = 7e-13
Identities = 41/239 (17%), Positives = 72/239 (30%), Gaps = 31/239 (12%)
Query: 130 NPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPN 189
+KVL+ + A + F+ + ++ +NLDG++ D E+ P +
Sbjct: 239 RRGVKVLLGLLGNHDI-TGLAQLSEQGAKDFAREVAQYCKAYNLDGVNYDDEYSNSPDLS 297
Query: 190 ----KSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMG 245
+ ++L + K + L+TV + D +D +
Sbjct: 298 NPSLTNPSTAAAARLCYETKQAM-PDKLVTVFDWGQMYGV-ATVDGVDAKEWIDI---VV 352
Query: 246 YDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGH 305
+Y S Y S+ N L + + G YG
Sbjct: 353 ANYGSA-AYPIGQMTKKQCSGI--------SMEFNLGGGGSLSASKAQSMIDGG---YGW 400
Query: 306 SYTLVNPDSTDYGMPAADVGRIGNQGFVDYIDTVAFLRDPDTIQIFDKNTSVPYAYRGD 364
+ P YG + + G + Y VA + KN PY Y D
Sbjct: 401 -FMGFAPSPAKYGSVFSRLQG-GGEVL--YGSNVA-----APTIFYKKNDPTPYKYPDD 450
>2dsk_A Chitinase; catalytic domain, active domain, crystalline CHIT
barrel, hydrolase; 1.50A {Pyrococcus furiosus} PDB:
3a4w_A* 3a4x_A* 3afb_A
Length = 311
Score = 52.0 bits (124), Expect = 1e-07
Identities = 25/182 (13%), Positives = 49/182 (26%), Gaps = 15/182 (8%)
Query: 73 YYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNPN 132
Y + + L + LAF S +L
Sbjct: 15 YIDMSLSVHKPLVEYAKLTGTKYFTLAFILYSSVYNGPAWAGSIPLEKFVDEVRELREIG 74
Query: 133 LKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSH 192
+V+I+ G + +E ++ + +N +D D E
Sbjct: 75 GEVIIAF---GGAVGPYLCQQASTPEQLAEWYIKVIDTYNATYLDFDIEAGI-------- 123
Query: 193 EKRMFSKLLQQLKFTLSG-RFLMTVAVAAPGPI---IDRAYDVPLMGRLVDFVSIMGYDY 248
+ + L ++ +F T+ + + G VD V+ M DY
Sbjct: 124 DADKLADALLIVQRERPWVKFSFTLPSDPGIGLAGGYGIIETMAKKGVRVDRVNPMTMDY 183
Query: 249 HS 250
+
Sbjct: 184 YW 185
>1ta3_A XIP-1, xylanase inhibitor protein I; beta alpha barrel (XIP-I),
beta alpha barrel (xylanase), HYD inhibitor-hydrolase
complex; HET: NAG; 1.70A {Triticum aestivum} SCOP:
c.1.8.5 PDB: 1om0_A* 1te1_A*
Length = 274
Score = 47.7 bits (113), Expect = 2e-06
Identities = 32/236 (13%), Positives = 67/236 (28%), Gaps = 40/236 (16%)
Query: 94 THILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLL-NPNLKVLISV----------TDA 142
T + ++F V N HL+ +K + + V +S+ ++
Sbjct: 31 TMVTMSFLDVFGANGKYHLDLSGHDLSSVGADIKHCQSKGVPVSLSIGGYGTGYSLPSNR 90
Query: 143 GTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQ 202
+ + + S+ + LDG+DL E + ++
Sbjct: 91 SALDLFDHL-WNSYFGGSKPSVPRPFGDAWLDGVDLFLEHGTPADRYDVLALELAKHNIR 149
Query: 203 QLKFTLSGRFLMTVAVAAPGPIIDRAY-DVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPN 261
+T V P A+ L + + V + Y+ +
Sbjct: 150 GGP---GKPLHLTATVRCGYP--PAAHVGRALATGIFERVHVRTYESDKWCNQ------- 197
Query: 262 APLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTLVNPDSTDY 317
++ W+ PA + +GL S+ V+P + Y
Sbjct: 198 ---------NLGWEGSWDKWT------AAYPATRFYVGLTADDKSHQWVHPKNVYY 238
>2hvm_A Hevamine; hydrolase, chitinase/lysozyme; 1.80A {Hevea brasiliensis}
SCOP: c.1.8.5 PDB: 1hvq_A* 1llo_A 1kr0_A* 1kr1_A*
1kqy_A* 1kqz_A*
Length = 273
Score = 46.6 bits (110), Expect = 5e-06
Identities = 47/241 (19%), Positives = 76/241 (31%), Gaps = 45/241 (18%)
Query: 78 QNSS-GLLPHQLNPNLCTHILLAFAQVSKNNTVA------HLEPDHVKYYRDVVAMKLL- 129
QN + G L + +++ +AF N H P ++
Sbjct: 9 QNGNEGTLTQTCSTRKYSYVNIAFLNKFGNGQTPQINLAGHCNPAAGGCTIVSNGIRSCQ 68
Query: 130 NPNLKVLISVTDAGTGNFAKAVSTRANRLA--------FSESILEFLIEHNLDGIDLDWE 181
+KV++S+ G G++ A A +A +S L + LDGID D E
Sbjct: 69 IQGIKVMLSL-GGGIGSYTLASQADAKNVADYLWNNFLGGKSSSRPLGDAVLDGIDFDIE 127
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241
+ ++ L + +T A P P DR L L D+V
Sbjct: 128 HGSTLYWD------DLARYLSAYS-KQGKKVYLTAAPQCPFP--DRYLGTALNTGLFDYV 178
Query: 242 SIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLP 301
+ Y+ Q ++N + I A K+ LGLP
Sbjct: 179 WVQFYNNP-------------------PCQYSSGNINNIINSWNRWTTSINAGKIFLGLP 219
Query: 302 T 302
Sbjct: 220 A 220
>3mu7_A XAIP-II, xylanase and alpha-amylase inhibitor protein; TIM barell,
amylase/xylanase inhibitory protein, hydrolase I; 1.29A
{Scadoxus multiflorus} PDB: 3o9n_A 3oih_A* 3hu7_A
3m7s_A* 3d5h_A*
Length = 273
Score = 46.6 bits (110), Expect = 6e-06
Identities = 33/237 (13%), Positives = 61/237 (25%), Gaps = 40/237 (16%)
Query: 78 QNSS-GLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLL-NPNLKV 135
Q+ L + ++++ F L+ +K + N+KV
Sbjct: 11 QSFDERSLEATCDSGNYAYVIIGFLNTFGGGQTPALDISGHSPKGLEPQIKHCQSKNVKV 70
Query: 136 LISV----------TDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGW 185
L+S+ + + A + S LDGID E G
Sbjct: 71 LLSIGGPAGPYSLDSRNDANDLAVYLHKNFLLPPAGTSESRPFGNAVLDGIDFHIEHGGP 130
Query: 186 PGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMG 245
+ + +L + F +T A P D + D + +
Sbjct: 131 SQYQ------LLANILSSFR-LSGSEFALTAAPQCVYP--DPNLGTVINSATFDAIWVQF 181
Query: 246 YDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPT 302
Y+ + +L W +K+ LG P
Sbjct: 182 YNNPQCSY----------------SASNASALMNAWK---EWSMKARTDKVFLGFPA 219
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.4 bits (112), Expect = 9e-06
Identities = 60/379 (15%), Positives = 99/379 (26%), Gaps = 155/379 (40%)
Query: 2 YL--LSSDFDTLNPTI--FFTFKVDTVPNLDTSPNRAVSYLQATYTYKNKPYHYKD-LHT 56
Y L + T + + F +T+ L + A + + + L
Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFT-------QGLNILEWLEN 221
Query: 57 PSNT-----------SVVAVDNYQLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSK 105
PSNT S + QL Y G P +L L
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHYVVT-AKLLGFTPGELRSYLKG----------- 269
Query: 106 NNTVAHLEPDHVKYYRDVVAMKLLNPNLKVLISVTDAG---TGNFAKAVS------TRAN 156
H + +V V I+ TD+ + KA++ R
Sbjct: 270 --ATGHSQ--------GLVTA--------VAIAETDSWESFFVSVRKAITVLFFIGVRCY 311
Query: 157 ----RLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFS----------KLLQ 202
+ SILE +E+N E G P P M S +
Sbjct: 312 EAYPNTSLPPSILEDSLENN--------E--GVPSP-------MLSISNLTQEQVQDYVN 354
Query: 203 QL-------------------KFTLSG--RFLMTVAV------AAPGPIIDRAYDVPLMG 235
+ +SG + L + + A G R +P
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSR---IPFSE 411
Query: 236 RLVDFVSIMGYDYHSYIWYLPVLGPNAP-----LYPAVTD-QGYFKSLNANWSVNYYLYK 289
R + F + +LPV +P L PA N +++
Sbjct: 412 RKLKFSNR----------FLPV---ASPFHSHLLVPASDLINKDLVKNNVSFNAKD---- 454
Query: 290 GIPANKLLLGLPTYGHSYT 308
+ +P Y ++
Sbjct: 455 --------IQIPVY-DTFD 464
Score = 41.2 bits (96), Expect = 7e-04
Identities = 48/286 (16%), Positives = 77/286 (26%), Gaps = 106/286 (37%)
Query: 150 AVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHE-----KRMFSKLLQQ- 203
A STR + H E P S + F+K+L +
Sbjct: 3 AYSTRP-----------LTLSHG------SLEHV-LLVPTASFFIASQLQEQFNKILPEP 44
Query: 204 -LKFT----------LSGRFLMTVA-VAAPGPIIDRAYDVPLMGRLVDFVS--IMGYDYH 249
F L G+FL V+ + P + +D L L +F + + G D H
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKV--GQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 250 SYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPTYGHSYTL 309
+ L + + Y + P +K + L
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIM---------AKRPFDK--------KSNSAL 145
Query: 310 VNPDSTDYGMPAADVGRI------GNQG------------------FV-DYIDTVA---- 340
A G G QG V D I A
Sbjct: 146 FR---------AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLS 196
Query: 341 -FLRDP-DTIQIFDKNTSVPYAYRGDQWISFDNEPSLAYKTEYLMS 384
+R D ++F + ++ +W+ PS +YL+S
Sbjct: 197 ELIRTTLDAEKVFTQGLNI------LEWL---ENPSNTPDKDYLLS 233
>1cnv_A Concanavalin B; plant chitinase, chitin binding protein, SEED
protein; 1.65A {Canavalia ensiformis} SCOP: c.1.8.5
Length = 299
Score = 42.8 bits (100), Expect = 1e-04
Identities = 38/240 (15%), Positives = 71/240 (29%), Gaps = 39/240 (16%)
Query: 78 QNSSGLLPHQLNPNLCTHILLAFAQVSKNN----TVAHLEPDHVKYYRDVVAMK-----L 128
Q GLL N + ++F + ++
Sbjct: 13 QREDGLLRDTCKTNNYKIVFISFLDKFGCEIRKPELELEGVCGPSVGNPCSFLESQIKEC 72
Query: 129 LNPNLKVLISVTDAG------TGNFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEF 182
+KV +++ + ++AK ++ + SE L + LDGI D +
Sbjct: 73 QRMGVKVFLALGGPKGTYSACSADYAKDLAEYLHTYFLSERREGPLGKVALDGIHFDIQK 132
Query: 183 PGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVS 242
P + L Q+K FL++ A P D D + R D++
Sbjct: 133 PVDELNWD-----NLLEELYQIKDVYQSTFLLSAAPGCLSP--DEYLDNAIQTRHFDYIF 185
Query: 243 IMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPT 302
+ Y+ S + G + + W +++ L L LP
Sbjct: 186 VRFYNDRSCQY----------------STGNIQRIRNAW-LSWTKSVYPRDKNLFLELPA 228
>2xtk_A CHIA1, class III chitinase CHIA1; hydrolase, GH18; HET: AZM; 2.00A
{Aspergillus fumigatus} PDB: 2xuc_A 2xvp_A 2xvn_A*
Length = 310
Score = 42.9 bits (100), Expect = 1e-04
Identities = 28/157 (17%), Positives = 42/157 (26%), Gaps = 20/157 (12%)
Query: 146 NFAKAVSTRANRLAFSESILEFLIEHNLDGIDLDWEFPGWPGPNKSHEKRMFSKLLQQLK 205
FA + +A + +DG D D E M + Q
Sbjct: 112 AFATFLWGAFGPVAEGWEGPRPFGDVVVDGFDFDIE-----HNGGFGYATMVNTFRQYFN 166
Query: 206 FTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLY 265
+F ++ A P D + DF+ I Y+ +
Sbjct: 167 QVPERKFYLSAAPQCIIP--DAQLSDAIFNAAFDFIWIQYYNTAACSAK----------S 214
Query: 266 PAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLPT 302
T G F N + V KL +GLP
Sbjct: 215 FIDTSLGTF---NFDAWVTVLKASASKDAKLYVGLPA 248
>2gsj_A Protein PPL-2; mimosoideae, chimerolectin, endochitinase, glycosyl
hydrolase family 18, equilibrium sedimentation, X-RAY;
1.73A {Parkia platycephala}
Length = 271
Score = 42.0 bits (98), Expect = 2e-04
Identities = 41/241 (17%), Positives = 80/241 (33%), Gaps = 47/241 (19%)
Query: 78 QNSS-GLLPHQLNPNLCTHILLAFAQVSKN------NTVAHLEPDHVKYYRDVVAMKLL- 129
QN G L L + +AF N H +P + ++
Sbjct: 9 QNGGEGTLTSTCESGLYQIVNIAFLSQFGGGRRPQINLAGHCDPANNGCRTVSDGIRACQ 68
Query: 130 NPNLKVLISVTDAGTGNFAKAVSTRANRLA--------FSESILEFLIEHNLDGIDLDWE 181
+KV++S+ G G+++ + A +A S L + LDG+D D E
Sbjct: 69 RRGIKVMLSI-GGGAGSYSLSSVQDARSVADYIWNNFLGGRSSSRPLGDAVLDGVDFDIE 127
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241
G ++ + +L + + + ++ A P P D++ + L L D+V
Sbjct: 128 HGG------AYYDALARRLSEHNRG--GKKVFLSAAPQCPFP--DQSLNKALSTGLFDYV 177
Query: 242 SIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLP 301
+ Y+ + +N+ ++ + K +GLP
Sbjct: 178 WVQFYNNPQCE--------------------FNSGNPSNFRNSWNKWTSSFNAKFYVGLP 217
Query: 302 T 302
Sbjct: 218 A 218
>2uy2_A Endochitinase; carbohydrate metabolism, polysaccharide degradation,
glycopr chitin-binding, chitin degradation, CAZY,
hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2uy3_A*
2uy4_A* 2uy5_A*
Length = 294
Score = 41.2 bits (96), Expect = 4e-04
Identities = 36/241 (14%), Positives = 70/241 (29%), Gaps = 46/241 (19%)
Query: 79 NSSGLLPHQLNPNLCTHILLAFAQVSKNNTVAHLEPDHVKYYRDVVAMKLLNP------- 131
+ L + LL+F + + ++ +
Sbjct: 18 GTQESLATYCESSDADIFLLSFLNQFPTLGLNFANACSDTFSDGLLHCTQIAEDIETCQS 77
Query: 132 -NLKVLISVTDAGTGNFAKAVSTRANRLA---------FSESILEFLIEHNLDGIDLDWE 181
KVL+S+ +G++ + ++A A + + +DG D D E
Sbjct: 78 LGKKVLLSL-GGASGSYLFSDDSQAETFAQTLWDTFGEGTGASERPFDSAVVDGFDFDIE 136
Query: 182 FPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFV 241
G + + L+ L + ++ ++ A P P D + L +DF
Sbjct: 137 NNNEVGYSA------LATKLRTLFAEGTKQYYLSAAPQCPYP--DASVGDLLENADIDFA 188
Query: 242 SIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIPANKLLLGLP 301
I Y+ + V+ Q + + KL LGLP
Sbjct: 189 FIQFYNNYCS----------------VSGQFNWDTWLTYAQ----TVSPNKNIKLFLGLP 228
Query: 302 T 302
Sbjct: 229 G 229
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.018
Identities = 54/415 (13%), Positives = 101/415 (24%), Gaps = 121/415 (29%)
Query: 27 LDTSPNRAV-----SYLQATYTYKNKPYHYKDLHTPSNTS--VVAVDNY----QLFCYYS 75
L + V L+ Y + P + T + D Q+F Y+
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 76 LPQNS------SGLLPHQLNPNLCTH-------ILLAFAQVSKNNTVAHLEPDHV----- 117
+ + LL + N+ +A V + V +
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-LDVCLSYKVQCKMDFKIFWLNL 189
Query: 118 -KYYRDVVAMKLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIEHNLDG- 175
+++L L I + + + R + + + L +
Sbjct: 190 KNCNSPETVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIHSI--QAELRRLLKSKPYENC 246
Query: 176 -IDLD--WEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVP 232
+ L +K F LS + L+T R V
Sbjct: 247 LLVLLNVQN----------------AKAWN--AFNLSCKILLTT----------RFKQV- 277
Query: 233 LMGRLVDFVSIMGYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYYLYKGIP 292
DF+S + + + + L P KSL +
Sbjct: 278 -----TDFLSAATTTH------ISLDHHSMTLTPDEV-----KSLLLKYL-------DCR 314
Query: 293 ANKLLLGLPTYGHSYTLVNPDSTDYGMPAA----DVGRIGN--QGFVDYIDTV--AFLR- 343
L P NP + A + N D + T+ + L
Sbjct: 315 PQDL----P---REVLTTNPRRL--SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 344 -DPDTIQ-------IFDKNTSVPYAYRGDQW--ISFDNEPSLAYKTEYLMSKGLA 388
+P + +F + +P W + + + K L L
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK---LHKYSLV 417
Score = 33.7 bits (76), Expect = 0.13
Identities = 44/351 (12%), Positives = 96/351 (27%), Gaps = 105/351 (29%)
Query: 3 LLSSDFDTLNPTIF--FTFKVDTVPNLDTSPNRAVS-YLQATYTYKNKPYHYKDLHTPSN 59
LL + N + F L T+ + V+ +L A T H+ TP
Sbjct: 247 LLVLL-NVQNAKAWNAFNLSCKI---LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 60 TSVVAVDNYQLFCYYSLPQNSSGLLPHQ---LNPNLCTHI--LLA--------FAQVSKN 106
L Y LP + NP + I + + V+ +
Sbjct: 303 VK-------SLLLKYL--DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353
Query: 107 N-------TVAHLEPDHVK-YYRDVVAMKLLNPNLKVLISV--------TDAGTGNFAKA 150
++ LEP + + + + P+ + + +
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLS---VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 151 VSTR--ANRLAFSESI------LEF-------------LIEH-------NLDGIDLDWEF 182
+ + +I LE +++H + D + +
Sbjct: 411 LHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 183 PGW--------PGPNKSHEKRMFSKLLQQLKFTLSGRF-LMTVAVAAPGPIID-----RA 228
+ +F + +F L + + A A G I++ +
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF-LEQKIRHDSTAWNASGSILNTLQQLKF 529
Query: 229 Y------DVPLMGRLV----DFVSIMGYDYHSY----IWYLPVLGPNAPLY 265
Y + P RLV DF+ + + + + ++ + ++
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
Score = 28.7 bits (63), Expect = 4.6
Identities = 14/106 (13%), Positives = 38/106 (35%), Gaps = 31/106 (29%)
Query: 333 VDYIDTVAFLRDPDTIQ----IFD----KNTSVPYAYRGD------QWI-----SFDNEP 373
+D+I + D + +F K + + + +++ + +P
Sbjct: 51 IDHI-----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 374 SLAYKTEYLMSKGLAGAMVWCLNTDDYAAKYHTSPYPLIKRIKTVL 419
S+ + Y+ + ++ N + AKY+ S +++ L
Sbjct: 106 SMMTR-MYIEQRD----RLY--NDNQVFAKYNVSRLQPYLKLRQAL 144
>1eok_A Endo-beta-N-acetylglucosaminidase F3; alpha/beta-barrel, hydrolase;
1.80A {Elizabethkingia meningoseptica} SCOP: c.1.8.5
PDB: 1eom_A*
Length = 290
Score = 33.3 bits (75), Expect = 0.12
Identities = 29/182 (15%), Positives = 61/182 (33%), Gaps = 13/182 (7%)
Query: 127 KLLNPNLKVLISVTDAGTGNFAKAVSTRANRLAFSESILEFLIE-HNLDGIDLDWE-FPG 184
L + +KVL ++ D + + A+ A+ ++I +I+ LDGI LD E
Sbjct: 74 SLQSRGIKVLQNIDDDVSWQ-SSKPGGFASAAAYGDAIKSIVIDKWKLDGISLDIEHSGA 132
Query: 185 WPGPNKSHEKRMFSKLLQQLKFTLSGRFLMTVAVAAPGPIIDRAYDVPLMGRLVDFVSIM 244
P P + + +++ ++
Sbjct: 133 KPNPIPTFPGYAATGYNGWYSGSMAATPAFLNVISELTKYFGTTAPNNKQ-----LQIAS 187
Query: 245 GYDYHSYIWYLPVLGPNAPLYPAVTDQGYFKSLNANWSVNYY--LYKGIPANKLLLGLPT 302
G D + + ++ + + Q Y +++ + Y IPA+K++ G
Sbjct: 188 GIDVY---AWNKIMENFRNNFNYIQLQSYGANVSRTQLMMNYATGTNKIPASKMVFGAYA 244
Query: 303 YG 304
G
Sbjct: 245 EG 246
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta
barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3
Length = 353
Score = 28.5 bits (63), Expect = 4.1
Identities = 7/36 (19%), Positives = 11/36 (30%)
Query: 366 WISFDNEPSLAYKTEYLMSKGLAGAMVWCLNTDDYA 401
S E+ +KG +GA W +
Sbjct: 296 NQEHGAGMSSESMFEWAYTKGYSGAWTWSRTDVSWN 331
>1r7a_A Sucrose phosphorylase; beta-alpha-barrels, dimer, glycoside
hydrolase, transferase; 1.77A {Bifidobacterium
adolescentis} SCOP: b.71.1.1 c.1.8.1 PDB: 2gdv_A*
2gdu_A*
Length = 504
Score = 27.9 bits (62), Expect = 7.7
Identities = 14/92 (15%), Positives = 31/92 (33%), Gaps = 13/92 (14%)
Query: 158 LAFSESILEFLIEHNLDGIDLD-----WEFPGWPGPNKSHEKRMFSKLLQQLKFTLSGRF 212
+ SI + + ++ I LD + G ++ S+L ++ G
Sbjct: 171 WEYLMSIFDQMAASHVSYIRLDAVGYGAKEAGTSCFMTPKTFKLISRLREEGVKR--GLE 228
Query: 213 LMTVAVAAPGPIID------RAYDVPLMGRLV 238
++ + ++ R YD L L+
Sbjct: 229 ILIEVHSYYKKQVEIASKVDRVYDFALPPLLL 260
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding
Pro RNA complex; 2.60A {Thermus thermophilus} PDB:
3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A
3hjf_A
Length = 685
Score = 28.0 bits (62), Expect = 8.0
Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 7/74 (9%)
Query: 49 YHYKDLHTPSNTSVVAVDNYQLFCYYSLPQNSSGLLPHQLNPNLCTHILLAFAQVSKNNT 108
+ V D L Q + + +L L AF + +
Sbjct: 480 GGRESFRFGGAACAVGGDGGHLLWTLPEAQAGERIPQEVVW-DLLEETLWAFRRKAGRL- 537
Query: 109 VAHLEPDHVKYYRD 122
P V R+
Sbjct: 538 -----PSRVLLLRN 546
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.425
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,664,484
Number of extensions: 403718
Number of successful extensions: 962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 794
Number of HSP's successfully gapped: 66
Length of query: 424
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 328
Effective length of database: 4,021,377
Effective search space: 1319011656
Effective search space used: 1319011656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.5 bits)