BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10283
(59 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8CIN6|CELF3_MOUSE CUGBP Elav-like family member 3 OS=Mus musculus GN=Celf3 PE=2 SV=1
Length = 465
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 93 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 134
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P KLFVG + + E D++ IF FG I E TV+K
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIK 40
>sp|Q5SZQ8|CELF3_HUMAN CUGBP Elav-like family member 3 OS=Homo sapiens GN=CELF3 PE=1 SV=1
Length = 465
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 135
Score = 34.7 bits (78), Expect = 0.20, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P KLFVG + + E D++ IF FG I E TV+K
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIK 40
>sp|Q08E07|CELF3_BOVIN CUGBP Elav-like family member 3 OS=Bos taurus GN=CELF3 PE=2 SV=1
Length = 461
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 135
Score = 34.7 bits (78), Expect = 0.19, Method: Composition-based stats.
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P KLFVG + + E D++ IF FG I E TV+K
Sbjct: 4 PDAIKLFVGQIPRHLEEKDLKPIFEQFGRIFELTVIK 40
>sp|Q5NVC8|CELF4_PONAB CUGBP Elav-like family member 4 OS=Pongo abelii GN=CELF4 PE=2 SV=2
Length = 486
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/51 (66%), Positives = 42/51 (82%), Gaps = 2/51 (3%)
Query: 9 NCTPLPP--DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
+C PP D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 142 SCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 192
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KLF+G + + +E D++ +F FG I E TVLK
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 87
>sp|Q9BZC1|CELF4_HUMAN CUGBP Elav-like family member 4 OS=Homo sapiens GN=CELF4 PE=1 SV=1
Length = 486
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/51 (66%), Positives = 42/51 (82%), Gaps = 2/51 (3%)
Query: 9 NCTPLPP--DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
+C PP D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 142 SCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 192
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KLF+G + + +E D++ +F FG I E TVLK
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 87
>sp|Q7TSY6|CELF4_MOUSE CUGBP Elav-like family member 4 OS=Mus musculus GN=Celf4 PE=1 SV=2
Length = 486
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 34/51 (66%), Positives = 42/51 (82%), Gaps = 2/51 (3%)
Query: 9 NCTPLPP--DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
+C PP D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 142 SCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 192
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KLF+G + + +E D++ +F FG I E TVLK
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 87
>sp|Q91579|CEL3A_XENLA CUGBP Elav-like family member 3-A OS=Xenopus laevis GN=tnrc4-a PE=2
SV=2
Length = 462
Score = 74.3 bits (181), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGML KQQ ++DVR++F PFG I+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPDGTSK 135
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P KLF+G + + +E D++ IF FG I E TV+K
Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIK 40
>sp|Q6DGV1|CELF4_DANRE CUGBP Elav-like family member 4 OS=Danio rerio GN=celf4 PE=2 SV=1
Length = 520
Score = 73.2 bits (178), Expect = 4e-13, Method: Composition-based stats.
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGML+KQQ EDDVR++F FG+IEECT+L+GPDG SK
Sbjct: 134 DRKLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPDGNSK 175
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KLF+G + + +E D+R +F FG I E TVLK
Sbjct: 48 KLFIGQIPRNLDEKDLRPLFEEFGKIYELTVLK 80
>sp|Q4R535|CELF4_MACFA CUGBP Elav-like family member 4 OS=Macaca fascicularis GN=CELF4
PE=2 SV=1
Length = 474
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 140 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 181
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KLF+G + + +E D++ +F FG I E TVLK
Sbjct: 55 KLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLK 87
>sp|Q7TN33|CELF6_MOUSE CUGBP Elav-like family member 6 OS=Mus musculus GN=Celf6 PE=2 SV=1
Length = 460
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGML KQQ E+DVR++F PFG IEECTVL+ PDGTSK
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 174
Score = 34.3 bits (77), Expect = 0.24, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KLFVG + + +E D++ +F FG I E TVLK
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLK 79
>sp|Q96J87|CELF6_HUMAN CUGBP Elav-like family member 6 OS=Homo sapiens GN=CELF6 PE=1 SV=1
Length = 481
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGML KQQ E+DVR++F PFG IEECTVL+ PDGTSK
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 174
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KLFVG + + +E D++ +F FG I E TVLK
Sbjct: 47 KLFVGQIPRGLDEQDLKPLFEEFGRIYELTVLK 79
>sp|Q9IBD1|CELF3_DANRE CUGBP Elav-like family member 3 OS=Danio rerio GN=celf3 PE=2 SV=2
Length = 452
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGML KQ ++ DVRK+F PFG+IEECTVL+GPDG SK
Sbjct: 93 DRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDGASK 134
Score = 34.3 bits (77), Expect = 0.26, Method: Composition-based stats.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KLF+G + + E D++ IF FG I E TV+K
Sbjct: 8 KLFIGQIPRNLEEKDLKPIFEQFGKIYELTVIK 40
>sp|Q7ZWM3|CEL3B_XENLA CUGBP Elav-like family member 3-B OS=Xenopus laevis GN=tnrc4-b PE=2
SV=1
Length = 462
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGML KQQ ++DVR++F FG I+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPDGTSK 135
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 23/37 (62%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P KLF+G + + +E D++ IF FG I E TV+K
Sbjct: 4 PDAIKLFIGQIPRNLDEKDLKPIFEQFGKIYELTVIK 40
>sp|Q8N6W0|CELF5_HUMAN CUGBP Elav-like family member 5 OS=Homo sapiens GN=CELF5 PE=1 SV=1
Length = 485
Score = 70.5 bits (171), Expect = 3e-12, Method: Composition-based stats.
Identities = 30/42 (71%), Positives = 39/42 (92%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGML+KQQ+E+DV ++F PFG I+ECTVL+GPDG+SK
Sbjct: 133 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 174
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52
KLFVG + + +E D++ +F FG I E TVLK P
Sbjct: 46 KLFVGQIPRHLDEKDLKPLFEQFGRIYELTVLKDP 80
>sp|O57406|CEL1A_XENLA CUGBP Elav-like family member 1-A OS=Xenopus laevis GN=cugbp1-a
PE=1 SV=1
Length = 489
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 36/42 (85%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMVSKNCNENDIRAMFSPFGQIEECRILRGPDGMSR 148
>sp|A4IIM2|CELF2_XENTR CUGBP Elav-like family member 2 OS=Xenopus tropicalis GN=celf2 PE=2
SV=1
Length = 513
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 126 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 167
Score = 33.5 bits (75), Expect = 0.37, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P P K+FVG + + +E +++ +F P+G + + VL+
Sbjct: 30 PDPDAIKMFVGQIPRSWSEKELKDLFEPYGAVYQINVLR 68
>sp|Q7T2T1|CELF2_CHICK CUGBP Elav-like family member 2 OS=Gallus gallus GN=CELF2 PE=1 SV=2
Length = 484
Score = 68.2 bits (165), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 148
Score = 32.7 bits (73), Expect = 0.63, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P P K FVG + + +E +++++F P+G + + VL+
Sbjct: 11 PDPDAIKTFVGQIPRSWSEKELKELFEPYGAVYQINVLR 49
>sp|Q792H5|CELF2_RAT CUGBP Elav-like family member 2 OS=Rattus norvegicus GN=Celf2 PE=2
SV=1
Length = 508
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 131 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 172
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P P K+FVG + + +E +++++F P+G + + VL+
Sbjct: 35 PDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLR 73
>sp|Q9Z0H4|CELF2_MOUSE CUGBP Elav-like family member 2 OS=Mus musculus GN=Celf2 PE=1 SV=1
Length = 508
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 131 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 172
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P P K+FVG + + +E +++++F P+G + + VL+
Sbjct: 35 PDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLR 73
>sp|Q7ZXE2|CELF2_XENLA CUGBP Elav-like family member 2 OS=Xenopus laevis GN=celf2 PE=1
SV=1
Length = 536
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 149 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 190
Score = 33.5 bits (75), Expect = 0.41, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P P K+FVG + + +E +++ +F P+G + + VL+
Sbjct: 53 PDPDAIKMFVGQIPRSWSEKELKDLFEPYGAVYQINVLR 91
>sp|Q5R8Y8|CELF2_PONAB CUGBP Elav-like family member 2 OS=Pongo abelii GN=CELF2 PE=2 SV=2
Length = 508
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 131 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 172
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P P K+FVG + + +E +++++F P+G + + VL+
Sbjct: 35 PDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLR 73
>sp|O95319|CELF2_HUMAN CUGBP Elav-like family member 2 OS=Homo sapiens GN=CELF2 PE=1 SV=1
Length = 508
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 131 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 172
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 25/39 (64%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P P K+FVG + + +E +++++F P+G + + VL+
Sbjct: 35 PDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINVLR 73
>sp|Q5F3T7|CELF1_CHICK CUGBP Elav-like family member 1 OS=Gallus gallus GN=CELF1 PE=1 SV=2
Length = 489
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 148
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
Query: 12 PLPPDK---KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P PD K+FVG + + E D+R++F +G + E VL+
Sbjct: 8 PDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLR 49
>sp|Q6P0B1|CELF2_DANRE CUGBP Elav-like family member 2 OS=Danio rerio GN=celf2 PE=2 SV=1
Length = 514
Score = 67.4 bits (163), Expect = 3e-11, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ NE+D+R +F+P+G IEEC +L+GPDG S+
Sbjct: 135 DRKLFIGMVSKKCNENDIRVMFSPYGQIEECRILRGPDGLSR 176
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P P K+FVG + + +E +++++F P+G + + +L+
Sbjct: 39 PDPDAIKMFVGQIPRSWSEKELKELFEPYGAVYQINILR 77
>sp|Q9IBD0|CELF1_DANRE CUGBP Elav-like family member 1 OS=Danio rerio GN=celf1 PE=1 SV=1
Length = 501
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGM+SK+ NE+D+R +F+P+G IEEC +L+GPDG S+
Sbjct: 107 DRKLFVGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLSR 148
Score = 35.8 bits (81), Expect = 0.073, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 23/33 (69%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
K+FVG + + +ED +R++F P+G + E VL+
Sbjct: 17 KMFVGQIPRTWSEDQLRELFEPYGAVYEINVLR 49
>sp|A0JM51|CELF5_XENTR CUGBP Elav-like family member 5 OS=Xenopus tropicalis GN=celf5 PE=2
SV=1
Length = 486
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/42 (69%), Positives = 38/42 (90%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGMLSKQQ+E++V +F FG+IEEC+VL+GPDG+SK
Sbjct: 134 DRKLFVGMLSKQQSEEEVTSMFQAFGSIEECSVLRGPDGSSK 175
Score = 33.9 bits (76), Expect = 0.32, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KLFVG + + E D++ +F FG I E TVLK
Sbjct: 48 KLFVGQIPRNLEEKDLKPLFEQFGKIYELTVLK 80
>sp|Q92879|CELF1_HUMAN CUGBP Elav-like family member 1 OS=Homo sapiens GN=CELF1 PE=1 SV=2
Length = 486
Score = 62.4 bits (150), Expect = 8e-10, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR 148
Score = 32.3 bits (72), Expect = 0.96, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 12 PLPPDK---KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P PD K+FVG + + +E D+R++F +G + E VL+
Sbjct: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLR 49
>sp|Q4QQT3|CELF1_RAT CUGBP Elav-like family member 1 OS=Rattus norvegicus GN=Celf1 PE=2
SV=1
Length = 487
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR 148
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 12 PLPPDK---KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P PD K+FVG + + +E D+R++F +G + E +L+
Sbjct: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILR 49
>sp|P28659|CELF1_MOUSE CUGBP Elav-like family member 1 OS=Mus musculus GN=Celf1 PE=1 SV=2
Length = 486
Score = 62.0 bits (149), Expect = 9e-10, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR 148
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 12 PLPPDK---KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P PD K+FVG + + +E D+R++F +G + E +L+
Sbjct: 8 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINILR 49
>sp|Q6PF35|CEL1B_XENLA CUGBP Elav-like family member 1-B OS=Xenopus laevis GN=cugbp1-b
PE=2 SV=1
Length = 489
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ NE+D+R +F+ FG IEE +L+GPDG S+
Sbjct: 107 DRKLFIGMVSKKCNENDIRTLFSQFGQIEESRILRGPDGMSR 148
>sp|Q28HE9|CELF1_XENTR CUGBP Elav-like family member 1 OS=Xenopus tropicalis GN=celf1 PE=2
SV=1
Length = 490
Score = 62.0 bits (149), Expect = 1e-09, Method: Composition-based stats.
Identities = 25/42 (59%), Positives = 35/42 (83%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLFVGM+SK+ NE+D+R +F+ FG IEE +L+GPDG S+
Sbjct: 107 DRKLFVGMVSKKCNENDIRAMFSQFGQIEESRILRGPDGMSR 148
>sp|Q5R995|CELF1_PONAB CUGBP Elav-like family member 1 OS=Pongo abelii GN=CELF1 PE=2 SV=1
Length = 513
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L GPDG S+
Sbjct: 134 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILWGPDGLSR 175
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 12 PLPPDK---KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P PD K+FVG + + +E D+R++F +G + E VL+
Sbjct: 35 PDQPDLDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLR 76
>sp|Q96DH6|MSI2H_HUMAN RNA-binding protein Musashi homolog 2 OS=Homo sapiens GN=MSI2
PE=1 SV=1
Length = 328
Score = 38.5 bits (88), Expect = 0.012, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52
K+F+G LS Q + D +R F+ FG I EC V++ P
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDP 56
Score = 30.0 bits (66), Expect = 4.7, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49
KK+FVG LS +DV++ F FG +E+ ++
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLM 142
>sp|Q920Q6|MSI2H_MOUSE RNA-binding protein Musashi homolog 2 OS=Mus musculus GN=Msi2
PE=1 SV=1
Length = 346
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52
K+F+G LS Q + D +R F+ FG I EC V++ P
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDP 56
Score = 29.6 bits (65), Expect = 5.1, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49
KK+FVG LS +DV++ F FG +E+ ++
Sbjct: 110 KKIFVGGLSANTVVEDVKQYFEQFGKVEDAMLM 142
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 38.1 bits (87), Expect = 0.018, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 19 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
L+V L +++ +++IF+PFGT+ V++ P+GTSK
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSK 358
Score = 29.3 bits (64), Expect = 7.4, Method: Composition-based stats.
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 19 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
++V L++ +DD++ F +G I V+K +G SK
Sbjct: 217 VYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSK 255
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 37.4 bits (85), Expect = 0.028, Method: Composition-based stats.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 11 TPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
TP P ++V L K+ ED++RK F FG I V++ G S+
Sbjct: 223 TPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSR 269
>sp|Q32P51|RA1L2_HUMAN Heterogeneous nuclear ribonucleoprotein A1-like 2 OS=Homo sapiens
GN=HNRNPA1L2 PE=2 SV=2
Length = 320
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 9 NCTPLPPD--KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59
+ +P P+ +KLF+G LS + ++ +R F +GT+ +C V++ P+ T + R
Sbjct: 4 SASPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-TKRSR 55
>sp|P04256|ROA1_RAT Heterogeneous nuclear ribonucleoprotein A1 OS=Rattus norvegicus
GN=Hnrnpa1 PE=1 SV=3
Length = 320
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 11 TPLPPD--KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59
+P P+ +KLF+G LS + ++ +R F +GT+ +C V++ P+ T + R
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-TKRSR 55
>sp|A5A6H4|ROA1_PANTR Heterogeneous nuclear ribonucleoprotein A1 OS=Pan troglodytes
GN=HNRNPA1 PE=2 SV=1
Length = 320
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 11 TPLPPD--KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59
+P P+ +KLF+G LS + ++ +R F +GT+ +C V++ P+ T + R
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-TKRSR 55
>sp|P49312|ROA1_MOUSE Heterogeneous nuclear ribonucleoprotein A1 OS=Mus musculus
GN=Hnrnpa1 PE=1 SV=2
Length = 320
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 11 TPLPPD--KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59
+P P+ +KLF+G LS + ++ +R F +GT+ +C V++ P+ T + R
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-TKRSR 55
>sp|Q28521|ROA1_MACMU Heterogeneous nuclear ribonucleoprotein A1 OS=Macaca mulatta
GN=HNRNPA1 PE=2 SV=3
Length = 320
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 11 TPLPPD--KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59
+P P+ +KLF+G LS + ++ +R F +GT+ +C V++ P+ T + R
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-TKRSR 55
>sp|P09867|ROA1_BOVIN Heterogeneous nuclear ribonucleoprotein A1 OS=Bos taurus
GN=HNRNPA1 PE=1 SV=2
Length = 320
Score = 37.0 bits (84), Expect = 0.034, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 11 TPLPPD--KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59
+P P+ +KLF+G LS + ++ +R F +GT+ +C V++ P+ T + R
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-TKRSR 55
>sp|P09651|ROA1_HUMAN Heterogeneous nuclear ribonucleoprotein A1 OS=Homo sapiens
GN=HNRNPA1 PE=1 SV=5
Length = 372
Score = 37.0 bits (84), Expect = 0.035, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 32/51 (62%), Gaps = 3/51 (5%)
Query: 11 TPLPPD--KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59
+P P+ +KLF+G LS + ++ +R F +GT+ +C V++ P+ T + R
Sbjct: 6 SPKEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPN-TKRSR 55
>sp|Q61474|MSI1H_MOUSE RNA-binding protein Musashi homolog 1 OS=Mus musculus GN=Msi1
PE=1 SV=1
Length = 362
Score = 36.6 bits (83), Expect = 0.051, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52
K+F+G LS Q ++ +R+ F FG ++EC V++ P
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP 55
>sp|Q8K3P4|MSI1H_RAT RNA-binding protein Musashi homolog 1 OS=Rattus norvegicus
GN=Msi1 PE=2 SV=1
Length = 362
Score = 36.6 bits (83), Expect = 0.052, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52
K+F+G LS Q ++ +R+ F FG ++EC V++ P
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP 55
>sp|O43347|MSI1H_HUMAN RNA-binding protein Musashi homolog 1 OS=Homo sapiens GN=MSI1
PE=1 SV=1
Length = 362
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52
K+F+G LS Q ++ +R+ F FG ++EC V++ P
Sbjct: 21 KMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP 55
>sp|P17130|ROA1_XENLA Heterogeneous nuclear ribonucleoproteins A1 homolog OS=Xenopus
laevis GN=hnrnpa1 PE=2 SV=1
Length = 365
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53
+KLF+G LS + ++ +R+ F +GT+ +C V++ P+
Sbjct: 14 RKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPN 50
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59
KK+FVG + + ED +R+ F +G IE ++ G+ K+R
Sbjct: 105 KKIFVGGIKEDTEEDHLREYFEQYGKIEVIEIMTD-RGSGKKR 146
>sp|P51989|RO21_XENLA Heterogeneous nuclear ribonucleoprotein A2 homolog 1 OS=Xenopus
laevis PE=2 SV=1
Length = 346
Score = 36.2 bits (82), Expect = 0.060, Method: Composition-based stats.
Identities = 13/36 (36%), Positives = 24/36 (66%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52
+KLF+G LS + E+ +R + +GT+ +C V++ P
Sbjct: 9 RKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDP 44
>sp|Q6IQ97|RBM41_DANRE RNA-binding protein 4.1 OS=Danio rerio GN=rbm4.1 PE=1 SV=1
Length = 419
Score = 35.8 bits (81), Expect = 0.070, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
K+FVG LS +++R +F+ +G I EC ++K
Sbjct: 3 KIFVGNLSPNTTAEEIRSLFSQYGKISECDIVK 35
>sp|Q9BDY9|RBM4_RABIT RNA-binding protein 4 OS=Oryctolagus cuniculus GN=RBM4 PE=2 SV=1
Length = 359
Score = 35.8 bits (81), Expect = 0.075, Method: Composition-based stats.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KLF+G L ++ E ++R +F +G + EC ++K
Sbjct: 3 KLFIGNLPREATEQEIRSLFEQYGKVLECDIIK 35
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.141 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,186,446
Number of Sequences: 539616
Number of extensions: 777440
Number of successful extensions: 2152
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1779
Number of HSP's gapped (non-prelim): 387
length of query: 59
length of database: 191,569,459
effective HSP length: 32
effective length of query: 27
effective length of database: 174,301,747
effective search space: 4706147169
effective search space used: 4706147169
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)