Query psy10283
Match_columns 59
No_of_seqs 142 out of 1181
Neff 9.6
Searched_HMMs 46136
Date Fri Aug 16 22:28:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10283.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10283hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0144|consensus 99.4 2.4E-14 5.3E-19 84.5 1.5 58 1-58 106-166 (510)
2 KOG0149|consensus 99.4 1.8E-13 3.9E-18 75.7 4.4 44 15-58 11-55 (247)
3 PLN03134 glycine-rich RNA-bind 99.4 1.5E-12 3.3E-17 68.0 6.3 44 15-58 33-77 (144)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 3E-12 6.4E-17 73.6 5.8 43 16-58 3-46 (352)
5 TIGR01648 hnRNP-R-Q heterogene 99.3 6.5E-12 1.4E-16 76.9 6.3 51 8-58 50-100 (578)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.3 7.5E-12 1.6E-16 72.0 6.0 43 16-58 269-312 (352)
7 TIGR01659 sex-lethal sex-letha 99.3 9.1E-12 2E-16 72.5 6.0 56 3-58 178-236 (346)
8 TIGR01659 sex-lethal sex-letha 99.3 2.4E-11 5.2E-16 70.8 6.4 45 14-58 105-150 (346)
9 KOG0126|consensus 99.3 2.1E-12 4.5E-17 69.7 1.5 44 15-58 34-78 (219)
10 KOG0117|consensus 99.2 4E-11 8.6E-16 71.3 5.2 51 8-58 75-126 (506)
11 KOG0148|consensus 99.2 4.9E-11 1.1E-15 67.5 4.5 55 4-58 43-105 (321)
12 PF00076 RRM_1: RNA recognitio 99.2 4.5E-11 9.7E-16 54.7 3.4 39 19-57 1-39 (70)
13 TIGR01645 half-pint poly-U bin 99.1 1.3E-10 2.7E-15 71.7 5.6 44 15-58 106-150 (612)
14 TIGR01628 PABP-1234 polyadenyl 99.1 2.4E-10 5.2E-15 69.4 5.5 56 3-58 71-130 (562)
15 KOG0113|consensus 99.1 2.3E-10 4.9E-15 65.5 4.2 44 15-58 100-144 (335)
16 TIGR01645 half-pint poly-U bin 99.1 4.8E-10 1E-14 69.2 5.8 43 16-58 204-247 (612)
17 TIGR01622 SF-CC1 splicing fact 99.1 4.8E-10 1E-14 66.6 5.4 45 15-59 88-133 (457)
18 PF14259 RRM_6: RNA recognitio 99.1 4.1E-10 8.9E-15 51.9 4.1 40 19-58 1-40 (70)
19 PLN03120 nucleic acid binding 99.1 5E-10 1.1E-14 63.2 5.1 38 16-53 4-41 (260)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.0 9.1E-10 2E-14 66.0 6.1 44 15-58 294-338 (509)
21 TIGR01628 PABP-1234 polyadenyl 99.0 5.3E-10 1.2E-14 67.9 5.2 41 18-58 2-43 (562)
22 KOG0144|consensus 99.0 4.6E-10 1E-14 66.8 4.1 46 13-58 31-77 (510)
23 PLN03121 nucleic acid binding 99.0 1.5E-09 3.3E-14 60.7 5.2 39 15-53 4-42 (243)
24 COG0724 RNA-binding proteins ( 99.0 1.7E-09 3.6E-14 58.9 5.2 44 16-59 115-159 (306)
25 KOG0145|consensus 99.0 2.7E-10 5.8E-15 64.6 1.9 56 3-58 112-170 (360)
26 TIGR01622 SF-CC1 splicing fact 99.0 1.9E-09 4E-14 64.1 5.5 43 16-58 186-229 (457)
27 KOG0127|consensus 99.0 1.5E-09 3.2E-14 66.2 4.9 44 15-58 291-335 (678)
28 KOG4205|consensus 99.0 1.7E-09 3.7E-14 62.4 4.9 44 15-58 5-49 (311)
29 KOG0148|consensus 99.0 2.2E-09 4.8E-14 61.0 5.1 38 15-52 163-200 (321)
30 KOG0125|consensus 98.9 2.1E-09 4.5E-14 62.3 4.8 41 13-53 93-133 (376)
31 KOG0121|consensus 98.9 1.4E-09 3.1E-14 56.1 3.2 39 15-53 35-73 (153)
32 KOG0146|consensus 98.9 1.5E-09 3.3E-14 61.8 3.3 56 3-58 4-61 (371)
33 KOG0109|consensus 98.9 1.1E-09 2.5E-14 62.6 2.7 35 17-51 3-37 (346)
34 KOG0123|consensus 98.9 3.1E-09 6.7E-14 62.6 4.6 52 3-58 66-117 (369)
35 KOG0114|consensus 98.9 7.2E-09 1.6E-13 51.9 4.9 42 12-53 14-55 (124)
36 PLN03213 repressor of silencin 98.9 5.7E-09 1.2E-13 63.5 5.3 38 14-51 8-45 (759)
37 KOG0122|consensus 98.9 5.8E-09 1.3E-13 58.4 4.5 44 15-58 188-232 (270)
38 KOG0131|consensus 98.8 3.2E-09 7E-14 57.4 2.9 56 3-58 80-140 (203)
39 smart00362 RRM_2 RNA recogniti 98.8 2.4E-08 5.2E-13 45.0 5.0 39 18-57 1-39 (72)
40 KOG0117|consensus 98.8 5.5E-09 1.2E-13 62.4 3.4 48 4-51 240-294 (506)
41 KOG0107|consensus 98.7 3.7E-08 8E-13 53.1 4.4 38 15-52 9-46 (195)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.7 3.6E-08 7.9E-13 59.4 4.9 37 16-52 2-38 (481)
43 KOG0108|consensus 98.7 3.2E-08 6.9E-13 59.3 4.2 42 17-58 19-61 (435)
44 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.7 7.8E-08 1.7E-12 58.0 5.6 38 15-52 274-312 (481)
45 TIGR01648 hnRNP-R-Q heterogene 98.7 7.2E-08 1.6E-12 59.5 5.4 49 3-51 213-270 (578)
46 KOG0105|consensus 98.6 3.6E-08 7.9E-13 53.8 3.0 36 15-50 5-40 (241)
47 KOG0145|consensus 98.6 9.2E-08 2E-12 54.5 4.5 44 15-58 40-84 (360)
48 cd00590 RRM RRM (RNA recogniti 98.6 2.5E-07 5.4E-12 41.8 5.0 37 18-54 1-37 (74)
49 smart00360 RRM RNA recognition 98.6 1.6E-07 3.5E-12 42.0 4.1 38 21-58 1-39 (71)
50 KOG0147|consensus 98.6 4E-08 8.7E-13 59.8 2.5 42 18-59 280-322 (549)
51 KOG1548|consensus 98.5 3.6E-07 7.7E-12 53.5 5.4 51 8-58 126-184 (382)
52 KOG0124|consensus 98.5 5.4E-08 1.2E-12 57.6 1.9 43 16-58 113-156 (544)
53 KOG0109|consensus 98.5 1.2E-07 2.7E-12 54.5 3.2 48 5-52 67-114 (346)
54 KOG0131|consensus 98.5 1.3E-07 2.7E-12 51.3 3.0 47 12-58 5-52 (203)
55 KOG4205|consensus 98.5 3E-07 6.6E-12 53.3 4.6 43 16-58 97-140 (311)
56 KOG0533|consensus 98.5 3.1E-07 6.8E-12 51.7 4.5 45 15-59 82-126 (243)
57 KOG4207|consensus 98.4 2.7E-07 5.9E-12 51.1 3.5 44 15-58 12-56 (256)
58 KOG0111|consensus 98.4 1.3E-07 2.9E-12 52.8 1.7 45 14-58 8-53 (298)
59 KOG4212|consensus 98.4 7.8E-07 1.7E-11 53.7 4.6 44 15-58 43-87 (608)
60 KOG0124|consensus 98.4 7.9E-07 1.7E-11 52.8 4.3 43 16-58 210-253 (544)
61 KOG0127|consensus 98.4 8.9E-07 1.9E-11 54.5 4.4 43 16-58 5-48 (678)
62 KOG0146|consensus 98.3 1.7E-06 3.8E-11 49.6 3.9 45 13-57 282-327 (371)
63 KOG4206|consensus 98.2 3E-06 6.6E-11 47.0 4.5 42 16-59 9-54 (221)
64 KOG0415|consensus 98.2 2.4E-06 5.3E-11 50.5 3.3 42 15-56 238-280 (479)
65 KOG0123|consensus 98.0 1.1E-05 2.3E-10 47.9 4.2 45 14-58 268-312 (369)
66 KOG0132|consensus 98.0 9.4E-06 2E-10 51.7 3.2 37 16-52 421-457 (894)
67 KOG4212|consensus 97.9 1E-05 2.2E-10 49.1 2.9 42 15-58 535-576 (608)
68 KOG4454|consensus 97.9 4.2E-06 9E-11 46.8 1.1 47 11-57 4-50 (267)
69 KOG0130|consensus 97.9 2.1E-05 4.5E-10 41.3 3.2 41 18-58 74-115 (170)
70 TIGR01642 U2AF_lg U2 snRNP aux 97.9 4.1E-05 9E-10 46.3 4.9 26 15-40 174-199 (509)
71 KOG0151|consensus 97.8 3.8E-05 8.2E-10 48.8 3.8 39 15-53 173-211 (877)
72 KOG4209|consensus 97.7 3.2E-05 6.9E-10 43.4 2.7 44 15-58 100-144 (231)
73 KOG0116|consensus 97.7 4.1E-05 8.8E-10 46.2 3.1 35 16-50 288-322 (419)
74 KOG0153|consensus 97.7 9.1E-05 2E-09 43.7 4.4 38 15-52 227-264 (377)
75 KOG0110|consensus 97.6 6.5E-05 1.4E-09 47.5 2.7 43 16-58 613-656 (725)
76 KOG4661|consensus 97.6 7.2E-05 1.6E-09 46.9 2.9 39 15-53 404-442 (940)
77 KOG0147|consensus 97.4 2.7E-05 5.9E-10 47.9 -0.7 45 15-59 178-223 (549)
78 KOG0106|consensus 97.2 0.00037 8E-09 38.9 2.5 32 17-48 2-33 (216)
79 KOG4660|consensus 97.2 0.00041 8.8E-09 43.0 2.7 34 15-48 74-107 (549)
80 KOG0226|consensus 97.1 0.00054 1.2E-08 39.2 2.7 45 14-58 188-233 (290)
81 KOG0129|consensus 97.1 0.002 4.4E-08 39.8 5.3 47 12-58 366-414 (520)
82 KOG3152|consensus 97.1 0.00086 1.9E-08 38.4 3.3 35 17-51 75-109 (278)
83 KOG4208|consensus 97.0 0.0017 3.7E-08 36.1 3.9 43 16-58 49-93 (214)
84 KOG0115|consensus 96.9 0.0013 2.9E-08 37.6 2.8 39 17-55 32-70 (275)
85 KOG4210|consensus 96.8 0.0016 3.4E-08 37.7 3.1 43 16-58 184-228 (285)
86 KOG0128|consensus 96.8 0.00077 1.7E-08 43.6 1.9 44 16-59 736-779 (881)
87 KOG0129|consensus 96.7 0.0017 3.6E-08 40.1 2.8 34 15-49 258-291 (520)
88 KOG0120|consensus 96.7 0.0025 5.5E-08 39.4 3.1 44 15-58 288-332 (500)
89 smart00361 RRM_1 RNA recogniti 96.6 0.0038 8.2E-08 28.7 3.0 29 30-58 2-38 (70)
90 KOG4849|consensus 96.6 0.00055 1.2E-08 40.9 0.2 42 17-58 81-125 (498)
91 KOG1457|consensus 96.4 0.0026 5.6E-08 36.1 2.1 31 18-48 212-242 (284)
92 PF13893 RRM_5: RNA recognitio 96.4 0.0056 1.2E-07 26.7 2.6 20 33-52 1-20 (56)
93 KOG4211|consensus 96.2 0.023 5E-07 35.2 5.4 43 14-58 8-50 (510)
94 KOG1190|consensus 96.2 0.011 2.4E-07 36.1 3.8 37 15-51 27-63 (492)
95 KOG0110|consensus 96.2 0.0069 1.5E-07 38.8 3.1 37 17-53 516-552 (725)
96 PF08777 RRM_3: RNA binding mo 95.3 0.03 6.5E-07 28.0 2.9 33 18-50 3-35 (105)
97 PF08675 RNA_bind: RNA binding 95.2 0.043 9.3E-07 26.7 3.2 29 16-45 9-37 (87)
98 KOG1855|consensus 95.0 0.047 1E-06 33.5 3.6 37 15-51 230-266 (484)
99 KOG1457|consensus 95.0 0.11 2.3E-06 29.8 4.7 34 15-48 33-66 (284)
100 PF14605 Nup35_RRM_2: Nup53/35 94.6 0.063 1.4E-06 23.6 2.7 32 17-49 2-33 (53)
101 KOG4211|consensus 94.6 0.095 2.1E-06 32.7 4.2 43 16-58 103-146 (510)
102 KOG1995|consensus 94.3 0.057 1.2E-06 32.3 2.8 44 15-58 65-117 (351)
103 KOG0112|consensus 93.7 0.022 4.8E-07 37.6 0.3 37 15-51 371-407 (975)
104 KOG0105|consensus 93.6 0.19 4.1E-06 28.1 3.8 38 15-52 114-151 (241)
105 KOG4206|consensus 93.5 0.21 4.6E-06 28.2 3.9 38 14-51 144-181 (221)
106 KOG4676|consensus 93.5 0.061 1.3E-06 32.8 1.9 35 17-51 8-42 (479)
107 KOG1190|consensus 93.2 0.23 5E-06 30.6 4.0 38 16-53 297-335 (492)
108 PF04059 RRM_2: RNA recognitio 93.2 0.38 8.2E-06 23.9 4.1 42 17-58 2-46 (97)
109 KOG0128|consensus 91.4 0.0071 1.5E-07 39.4 -3.9 43 17-59 668-711 (881)
110 PF11608 Limkain-b1: Limkain b 91.3 0.47 1E-05 23.2 3.1 29 18-46 4-37 (90)
111 PF15513 DUF4651: Domain of un 90.9 0.4 8.6E-06 22.0 2.5 18 31-48 9-26 (62)
112 KOG0112|consensus 88.5 1 2.2E-05 30.4 3.8 35 14-48 453-487 (975)
113 KOG0106|consensus 87.4 0.59 1.3E-05 26.4 2.1 32 15-46 98-129 (216)
114 KOG4454|consensus 86.5 0.19 4.1E-06 28.7 -0.2 42 16-57 80-125 (267)
115 COG0030 KsgA Dimethyladenosine 85.0 2 4.3E-05 24.9 3.4 35 17-51 96-130 (259)
116 COG5175 MOT2 Transcriptional r 84.8 1.1 2.3E-05 27.4 2.3 34 17-50 115-154 (480)
117 KOG1456|consensus 84.6 2.8 6.1E-05 25.9 4.0 40 15-54 286-326 (494)
118 KOG2891|consensus 83.5 1.5 3.2E-05 26.2 2.5 36 14-49 147-194 (445)
119 KOG2314|consensus 81.8 0.96 2.1E-05 29.2 1.4 45 14-58 56-106 (698)
120 PF10567 Nab6_mRNP_bdg: RNA-re 80.2 1.8 3.8E-05 25.7 2.0 38 15-52 14-51 (309)
121 PF05172 Nup35_RRM: Nup53/35/4 78.6 4 8.7E-05 20.3 2.8 32 15-47 5-36 (100)
122 KOG1365|consensus 77.4 6.7 0.00015 24.5 3.9 43 16-58 280-325 (508)
123 PF03467 Smg4_UPF3: Smg-4/UPF3 77.2 1.1 2.4E-05 24.4 0.6 29 15-43 6-35 (176)
124 KOG4008|consensus 76.6 2.5 5.5E-05 24.4 1.9 33 14-46 38-70 (261)
125 KOG1456|consensus 75.0 12 0.00027 23.3 4.6 35 15-49 30-64 (494)
126 PF11411 DNA_ligase_IV: DNA li 74.7 2.5 5.3E-05 17.3 1.2 17 26-42 19-35 (36)
127 PF00054 Laminin_G_1: Laminin 74.0 1 2.2E-05 22.9 -0.0 34 15-48 91-125 (131)
128 KOG1365|consensus 73.4 14 0.00031 23.1 4.6 41 18-58 163-207 (508)
129 KOG2193|consensus 72.3 3.2 6.9E-05 26.1 1.7 24 17-40 2-25 (584)
130 KOG4307|consensus 71.4 8.4 0.00018 25.9 3.5 40 18-57 869-909 (944)
131 PF07292 NID: Nmi/IFP 35 domai 70.1 4.2 9E-05 19.9 1.6 24 15-38 51-74 (88)
132 PF12623 Hen1_L: RNA repair, l 69.7 16 0.00034 21.2 4.0 36 17-52 119-155 (245)
133 PRK00274 ksgA 16S ribosomal RN 69.1 6.5 0.00014 22.6 2.5 34 18-51 107-140 (272)
134 PTZ00338 dimethyladenosine tra 65.2 7.2 0.00016 22.9 2.2 34 18-51 103-136 (294)
135 KOG4307|consensus 64.8 8.3 0.00018 25.9 2.5 40 15-54 433-473 (944)
136 PF00398 RrnaAD: Ribosomal RNA 63.5 8.7 0.00019 21.9 2.3 31 16-46 97-129 (262)
137 PF15063 TC1: Thyroid cancer p 62.6 4.4 9.5E-05 19.4 0.8 27 16-42 25-51 (79)
138 KOG2318|consensus 59.5 14 0.0003 24.2 2.8 41 15-55 173-218 (650)
139 KOG4410|consensus 57.3 18 0.0004 21.8 2.9 27 16-42 330-356 (396)
140 smart00650 rADc Ribosomal RNA 55.1 25 0.00055 18.5 3.1 32 18-49 79-110 (169)
141 KOG2135|consensus 54.5 6.3 0.00014 25.0 0.8 29 23-51 379-408 (526)
142 PF02210 Laminin_G_2: Laminin 50.7 6 0.00013 19.2 0.2 32 16-48 93-125 (128)
143 KOG2253|consensus 50.6 14 0.0003 24.4 1.8 34 14-47 38-71 (668)
144 TIGR00755 ksgA dimethyladenosi 49.8 41 0.00088 19.0 3.5 24 19-42 97-120 (253)
145 COG5584 Predicted small secret 48.2 32 0.00068 17.3 2.5 23 31-53 37-59 (103)
146 PF15407 Spo7_2_N: Sporulation 48.2 15 0.00032 17.0 1.3 18 15-32 26-43 (67)
147 PF09707 Cas_Cas2CT1978: CRISP 48.1 33 0.00071 16.7 2.6 26 16-41 25-50 (86)
148 PF07230 Peptidase_S80: Bacter 47.4 27 0.00058 22.4 2.7 29 21-53 283-311 (501)
149 PHA02531 20 portal vertex prot 42.7 23 0.00051 22.7 1.9 34 19-56 284-318 (514)
150 PHA01632 hypothetical protein 42.4 27 0.00059 15.8 1.6 18 21-38 21-38 (64)
151 cd00110 LamG Laminin G domain; 41.8 25 0.00054 17.6 1.7 32 15-48 117-150 (151)
152 COG3189 Uncharacterized conser 41.2 54 0.0012 17.0 3.0 33 1-33 3-36 (117)
153 PF12631 GTPase_Cys_C: Catalyt 41.1 28 0.00061 16.0 1.7 14 27-40 59-72 (73)
154 PRK13256 thiopurine S-methyltr 40.1 50 0.0011 18.8 2.8 26 22-47 171-196 (226)
155 cd00027 BRCT Breast Cancer Sup 39.9 33 0.00072 14.2 2.7 26 17-42 2-27 (72)
156 PF08366 LLGL: LLGL2; InterPr 39.8 32 0.0007 17.4 1.9 24 5-28 18-41 (105)
157 KOG2068|consensus 38.4 25 0.00054 21.3 1.5 36 17-52 78-116 (327)
158 PF01984 dsDNA_bind: Double-st 34.5 22 0.00047 17.9 0.8 20 22-41 75-94 (107)
159 COG5638 Uncharacterized conser 34.3 50 0.0011 21.1 2.4 42 15-56 145-191 (622)
160 smart00457 MACPF membrane-atta 33.8 22 0.00048 19.3 0.8 21 22-42 31-51 (194)
161 PF14111 DUF4283: Domain of un 33.1 27 0.00058 17.8 1.0 32 18-49 106-138 (153)
162 PF05724 TPMT: Thiopurine S-me 32.5 52 0.0011 18.5 2.1 26 23-48 165-190 (218)
163 KOG3432|consensus 32.3 47 0.001 17.1 1.8 31 16-48 35-65 (121)
164 PF03672 UPF0154: Uncharacteri 32.1 43 0.00093 15.4 1.5 17 26-42 30-46 (64)
165 PRK00523 hypothetical protein; 31.2 45 0.00097 15.8 1.5 17 26-42 38-54 (72)
166 KOG1888|consensus 30.9 1.4E+02 0.0031 20.7 4.1 38 16-53 309-349 (868)
167 COG3194 DAL3 Ureidoglycolate h 30.1 26 0.00057 19.2 0.7 12 34-45 11-22 (168)
168 smart00282 LamG Laminin G doma 29.8 31 0.00066 17.1 0.9 32 16-48 100-132 (135)
169 PF14893 PNMA: PNMA 29.2 50 0.0011 20.1 1.8 24 15-38 17-40 (331)
170 PRK11558 putative ssRNA endonu 28.9 86 0.0019 15.7 2.5 26 16-41 27-52 (97)
171 PRK04239 hypothetical protein; 28.8 52 0.0011 16.8 1.6 19 22-40 80-98 (110)
172 PF08952 DUF1866: Domain of un 28.6 89 0.0019 16.8 2.5 20 32-51 52-71 (146)
173 smart00195 DSPc Dual specifici 28.1 52 0.0011 16.5 1.6 18 18-35 7-24 (138)
174 PF07683 CobW_C: Cobalamin syn 27.7 73 0.0016 14.8 2.0 23 15-40 71-93 (94)
175 PRK14896 ksgA 16S ribosomal RN 27.3 1.3E+02 0.0028 17.2 3.2 21 18-38 93-113 (258)
176 PF10309 DUF2414: Protein of u 27.3 75 0.0016 14.5 3.4 35 16-51 5-42 (62)
177 PRK01844 hypothetical protein; 27.2 58 0.0013 15.4 1.5 17 26-42 37-53 (72)
178 COG2441 Predicted butyrate kin 26.9 61 0.0013 19.8 1.8 33 18-50 276-314 (374)
179 PF13600 DUF4140: N-terminal d 26.8 44 0.00094 16.2 1.1 36 15-50 22-57 (104)
180 TIGR02276 beta_rpt_yvtn 40-res 26.6 53 0.0012 12.5 1.3 10 15-24 2-11 (42)
181 PF06317 Arena_RNA_pol: Arenav 26.3 22 0.00048 26.8 0.0 29 13-41 1121-1149(2207)
182 PF08368 FAST_2: FAST kinase-l 26.2 89 0.0019 15.0 2.8 18 38-55 73-90 (93)
183 KOG0821|consensus 25.4 58 0.0013 19.2 1.6 18 20-37 133-150 (326)
184 cd01611 GABARAP Ubiquitin doma 25.0 81 0.0018 16.0 1.9 25 17-42 72-96 (112)
185 COG2118 DNA-binding protein [G 24.0 81 0.0018 16.3 1.8 20 21-40 82-101 (116)
186 KOG2591|consensus 23.8 2.4E+02 0.0051 19.0 4.7 37 15-51 174-212 (684)
187 PF14404 Strep_pep: Ribosomall 23.5 40 0.00087 15.3 0.6 14 1-14 1-14 (63)
188 KOG4483|consensus 22.9 93 0.002 19.9 2.2 36 17-52 392-428 (528)
189 PF10905 DUF2695: Protein of u 22.6 90 0.002 13.8 2.1 23 28-50 30-52 (53)
190 PRK00050 16S rRNA m(4)C1402 me 22.3 50 0.0011 19.6 0.9 19 27-45 138-156 (296)
191 TIGR00006 S-adenosyl-methyltra 22.1 52 0.0011 19.7 1.0 19 27-45 140-158 (305)
192 cd00127 DSPc Dual specificity 21.9 76 0.0016 15.7 1.5 19 16-34 6-24 (139)
193 PF08756 YfkB: YfkB-like domai 21.2 80 0.0017 17.1 1.5 41 16-57 32-75 (153)
194 COG5594 Uncharacterized integr 21.1 94 0.002 21.5 2.0 28 15-42 207-235 (827)
195 COG0130 TruB Pseudouridine syn 21.1 1.6E+02 0.0034 17.5 2.8 30 16-45 75-108 (271)
196 PF15628 RRM_DME: RRM in Demet 21.0 1.1E+02 0.0025 15.4 1.9 25 15-39 49-77 (103)
197 PF12464 Mac: Maltose acetyltr 20.8 68 0.0015 13.5 1.0 11 31-41 44-54 (55)
198 KOG0820|consensus 20.7 1.3E+02 0.0028 18.3 2.4 21 18-38 125-145 (315)
199 PF09445 Methyltransf_15: RNA 20.7 22 0.00048 19.2 -0.7 37 22-58 117-155 (163)
200 PF01823 MACPF: MAC/Perforin d 20.6 71 0.0015 17.1 1.3 23 21-43 53-78 (212)
201 cd06257 DnaJ DnaJ domain or J- 20.5 87 0.0019 12.8 1.9 17 23-39 7-23 (55)
202 PF14112 DUF4284: Domain of un 20.3 1.4E+02 0.0031 15.2 2.4 18 18-38 3-20 (122)
203 PRK13395 ureidoglycolate hydro 20.3 66 0.0014 17.7 1.1 12 35-46 12-23 (171)
No 1
>KOG0144|consensus
Probab=99.45 E-value=2.4e-14 Score=84.46 Aligned_cols=58 Identities=45% Similarity=0.805 Sum_probs=54.5
Q ss_pred CcceeecccCCCCCC---CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 1 MLPLDLIWNCTPLPP---DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 1 ~~~~~~~~~~~~~~~---~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
|.|+++.+++.+... +++||||.|+..++|.+++++|++||.|++|.|++|.+|.+||
T Consensus 106 ~~pvqvk~Ad~E~er~~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRG 166 (510)
T KOG0144|consen 106 HHPVQVKYADGERERIVEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRG 166 (510)
T ss_pred CcceeecccchhhhccccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccc
Confidence 579999999997765 8999999999999999999999999999999999999999998
No 2
>KOG0149|consensus
Probab=99.44 E-value=1.8e-13 Score=75.69 Aligned_cols=44 Identities=34% Similarity=0.588 Sum_probs=41.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.-.+||||+|++.++.+.|++.|++||+|.++.|+.|+. |+|||
T Consensus 11 ~~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskG 55 (247)
T KOG0149|consen 11 TFTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKG 55 (247)
T ss_pred eEEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccc
Confidence 456899999999999999999999999999999999999 99998
No 3
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.40 E-value=1.5e-12 Score=68.01 Aligned_cols=44 Identities=32% Similarity=0.568 Sum_probs=41.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||+.+++++|+++|++||.|.+++++.|+. +++||
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG 77 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRG 77 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcce
Confidence 567899999999999999999999999999999999988 88887
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.35 E-value=3e-12 Score=73.64 Aligned_cols=43 Identities=26% Similarity=0.597 Sum_probs=40.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..+|||+|||..+++++|+++|+.||+|.++++++|+. |+++|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g 46 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLG 46 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccce
Confidence 57899999999999999999999999999999999987 88887
No 5
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.32 E-value=6.5e-12 Score=76.86 Aligned_cols=51 Identities=22% Similarity=0.421 Sum_probs=45.3
Q ss_pred ccCCCCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 8 WNCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 8 ~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
|...++...++|||+|||.++++++|+++|++||.|.+++|++|..|++||
T Consensus 50 ~~~~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRG 100 (578)
T TIGR01648 50 WSGVQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRG 100 (578)
T ss_pred ccCCCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccc
Confidence 444455678999999999999999999999999999999999995599987
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.31 E-value=7.5e-12 Score=71.99 Aligned_cols=43 Identities=23% Similarity=0.470 Sum_probs=40.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
...|||+|||+.+++++|+++|++||.|.+++|+.|+. |++||
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG 312 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKG 312 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccc
Confidence 34699999999999999999999999999999999996 99887
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.30 E-value=9.1e-12 Score=72.53 Aligned_cols=56 Identities=23% Similarity=0.415 Sum_probs=47.4
Q ss_pred ceeecccCCC--CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 3 PLDLIWNCTP--LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~~--~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
++++.|+.+. .....+|||+|||..+++++|+++|++||.|.+++++.|+. |++||
T Consensus 178 ~i~V~~a~p~~~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG 236 (346)
T TIGR01659 178 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRG 236 (346)
T ss_pred eeeeecccccccccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccce
Confidence 4667776542 23567899999999999999999999999999999999987 88876
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.27 E-value=2.4e-11 Score=70.79 Aligned_cols=45 Identities=20% Similarity=0.461 Sum_probs=42.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
...++|||++||.++++++|+++|+.||.|.+++|+.|.. +++||
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srG 150 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFG 150 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCc
Confidence 3578999999999999999999999999999999999987 88887
No 9
>KOG0126|consensus
Probab=99.25 E-value=2.1e-12 Score=69.67 Aligned_cols=44 Identities=23% Similarity=0.502 Sum_probs=42.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.+..||||+||+..|+.++-.+|++||+|.++.+++|+. |+|+|
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKG 78 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKG 78 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccc
Confidence 567899999999999999999999999999999999999 99998
No 10
>KOG0117|consensus
Probab=99.20 E-value=4e-11 Score=71.32 Aligned_cols=51 Identities=27% Similarity=0.585 Sum_probs=48.2
Q ss_pred ccCCCCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 8 WNCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 8 ~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
|...+++.++.||||.||.++.|++|..+|+..|+|.++++|+|+. |.+||
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRG 126 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRG 126 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcc
Confidence 7777778899999999999999999999999999999999999988 99998
No 11
>KOG0148|consensus
Probab=99.17 E-value=4.9e-11 Score=67.51 Aligned_cols=55 Identities=33% Similarity=0.660 Sum_probs=48.8
Q ss_pred eeecccCCCCCC-------CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 4 LDLIWNCTPLPP-------DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 4 ~~~~~~~~~~~~-------~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
++++|++.|... -..+|||-|...++.++|++.|.+||+|.+++|++|.. +|+||
T Consensus 43 ~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKG 105 (321)
T KOG0148|consen 43 LKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKG 105 (321)
T ss_pred hccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccc
Confidence 578899887442 23599999999999999999999999999999999999 99998
No 12
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.16 E-value=4.5e-11 Score=54.70 Aligned_cols=39 Identities=38% Similarity=0.755 Sum_probs=34.5
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCC
Q psy10283 19 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57 (59)
Q Consensus 19 l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~r 57 (59)
|||+|||..+++++|+++|++||.+..+.+..+..++++
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~ 39 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSK 39 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccccccccc
Confidence 799999999999999999999999999999987435443
No 13
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.14 E-value=1.3e-10 Score=71.66 Aligned_cols=44 Identities=32% Similarity=0.569 Sum_probs=41.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++||||||++.+++++|+++|+.||.|.++++++|+. |++||
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskG 150 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKG 150 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCC
Confidence 467999999999999999999999999999999999988 99987
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.10 E-value=2.4e-10 Score=69.43 Aligned_cols=56 Identities=25% Similarity=0.525 Sum_probs=47.1
Q ss_pred ceeecccCCCCC----CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 3 PLDLIWNCTPLP----PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~~~~----~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
++++.|+...+. ...+|||+||+.++++++|+++|+.||.|.+|+++.|..|+++|
T Consensus 71 ~i~i~~s~~~~~~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg 130 (562)
T TIGR01628 71 PIRIMWSQRDPSLRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRG 130 (562)
T ss_pred eEEeecccccccccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCccc
Confidence 466777654322 35689999999999999999999999999999999997788887
No 15
>KOG0113|consensus
Probab=99.07 E-value=2.3e-10 Score=65.46 Aligned_cols=44 Identities=32% Similarity=0.559 Sum_probs=41.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.-++|||+.|+..++|.+|+..|+.||.|..+.++.|.. |+++|
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskG 144 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKG 144 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccc
Confidence 457999999999999999999999999999999999988 99998
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.07 E-value=4.8e-10 Score=69.18 Aligned_cols=43 Identities=23% Similarity=0.582 Sum_probs=40.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.++|||+||+..+++++|+++|+.||.|.+++++.|+. |++||
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKG 247 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKG 247 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCC
Confidence 46899999999999999999999999999999999988 88887
No 17
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.06 E-value=4.8e-10 Score=66.55 Aligned_cols=45 Identities=24% Similarity=0.428 Sum_probs=41.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKER 59 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG~ 59 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.|+. |+++|.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~ 133 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGV 133 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceE
Confidence 467899999999999999999999999999999999988 888873
No 18
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.06 E-value=4.1e-10 Score=51.89 Aligned_cols=40 Identities=30% Similarity=0.697 Sum_probs=33.7
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 19 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 19 l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
|||+|||+.+++++|.++|+.+|.|..+.+..+++|.++|
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~ 40 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRG 40 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCC
Confidence 7999999999999999999999999999999986655443
No 19
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.05 E-value=5e-10 Score=63.17 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=35.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
.++|||+||++.+++++|+++|+.||.|.++.++.|..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~ 41 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE 41 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC
Confidence 57899999999999999999999999999999998864
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.04 E-value=9.1e-10 Score=66.02 Aligned_cols=44 Identities=23% Similarity=0.550 Sum_probs=40.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
...+|||+|||..+++++|+++|+.||.|..+.++.+.. |+++|
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g 338 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKG 338 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCe
Confidence 357899999999999999999999999999999999987 88887
No 21
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.04 E-value=5.3e-10 Score=67.95 Aligned_cols=41 Identities=27% Similarity=0.453 Sum_probs=39.1
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.|||||||.++++++|+++|+.||.|.++++.+|.. ++++|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G 43 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLG 43 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcce
Confidence 699999999999999999999999999999999988 88887
No 22
>KOG0144|consensus
Probab=99.01 E-value=4.6e-10 Score=66.76 Aligned_cols=46 Identities=33% Similarity=0.601 Sum_probs=42.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..+.-++|||.+|+..+|.+|+++|++||.|.+|.|++|+. |.++|
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~g 77 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKG 77 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccc
Confidence 33566899999999999999999999999999999999998 88877
No 23
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.99 E-value=1.5e-09 Score=60.67 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=36.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
...+|||+||++.+++++|+++|+.||+|.+++++.|..
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e 42 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE 42 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 457899999999999999999999999999999998854
No 24
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.98 E-value=1.7e-09 Score=58.92 Aligned_cols=44 Identities=30% Similarity=0.649 Sum_probs=40.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKER 59 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG~ 59 (59)
..+|||+|||..+++++|+++|..||.+..+.+..|+. |+++|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~ 159 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGF 159 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCce
Confidence 48999999999999999999999999999999999976 888873
No 25
>KOG0145|consensus
Probab=98.97 E-value=2.7e-10 Score=64.60 Aligned_cols=56 Identities=25% Similarity=0.467 Sum_probs=49.6
Q ss_pred ceeecccCCCCC--CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 3 PLDLIWNCTPLP--PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~~~~--~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.+|++++.+... .+.+|||.+||..++..+|+.+|++||.|..-+|+.|.- |.+||
T Consensus 112 TIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srG 170 (360)
T KOG0145|consen 112 TIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRG 170 (360)
T ss_pred eEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecc
Confidence 478888887544 678999999999999999999999999999999999987 88887
No 26
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.97 E-value=1.9e-09 Score=64.06 Aligned_cols=43 Identities=42% Similarity=0.736 Sum_probs=40.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.++|||+|||..+++++|+++|++||.|..+.++.+.. |+++|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g 229 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKG 229 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccce
Confidence 57899999999999999999999999999999999988 78876
No 27
>KOG0127|consensus
Probab=98.96 E-value=1.5e-09 Score=66.24 Aligned_cols=44 Identities=30% Similarity=0.551 Sum_probs=41.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
...+|||.|||++++++.|...|++||+|..+.++.++. |+++|
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skG 335 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKG 335 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCccc
Confidence 457899999999999999999999999999999999999 99988
No 28
>KOG4205|consensus
Probab=98.96 E-value=1.7e-09 Score=62.41 Aligned_cols=44 Identities=36% Similarity=0.789 Sum_probs=42.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..+++|||+|++.++++.|++.|++||+|.+|.+++|+. +++||
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrg 49 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRG 49 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCccc
Confidence 678999999999999999999999999999999999999 88887
No 29
>KOG0148|consensus
Probab=98.96 E-value=2.2e-09 Score=60.96 Aligned_cols=38 Identities=34% Similarity=0.674 Sum_probs=35.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
.++.|||||++..++++.+++.|++||.|.++++.+|+
T Consensus 163 ~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q 200 (321)
T KOG0148|consen 163 DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ 200 (321)
T ss_pred CCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc
Confidence 57899999999999999999999999999999998886
No 30
>KOG0125|consensus
Probab=98.94 E-value=2.1e-09 Score=62.29 Aligned_cols=41 Identities=20% Similarity=0.388 Sum_probs=37.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
....++|+|+|+||+..+.||+..|++||+|.++.|+++..
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNER 133 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNER 133 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccC
Confidence 34678999999999999999999999999999999999864
No 31
>KOG0121|consensus
Probab=98.92 E-value=1.4e-09 Score=56.08 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=35.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
.+++||||||++.++|+.+.++|+.+|.|..+.+-.|+.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~ 73 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF 73 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC
Confidence 578999999999999999999999999999987777765
No 32
>KOG0146|consensus
Probab=98.90 E-value=1.5e-09 Score=61.77 Aligned_cols=56 Identities=61% Similarity=0.997 Sum_probs=47.4
Q ss_pred ceeecccCC--CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 3 PLDLIWNCT--PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~--~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
|+++.-+.+ ...++++||||-|...-+|++.+.+|..||.|++|.+.+.++|.+||
T Consensus 4 piqvkpadsesrg~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKG 61 (371)
T KOG0146|consen 4 PIQVKPADSESRGGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKG 61 (371)
T ss_pred CccccccccccCCccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCC
Confidence 344444443 34478999999999999999999999999999999999999999887
No 33
>KOG0109|consensus
Probab=98.90 E-value=1.1e-09 Score=62.61 Aligned_cols=35 Identities=34% Similarity=0.840 Sum_probs=33.2
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
.++||||||..+++.+|+.+|++||+|.+|.|+++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN 37 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN 37 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc
Confidence 47999999999999999999999999999999876
No 34
>KOG0123|consensus
Probab=98.90 E-value=3.1e-09 Score=62.55 Aligned_cols=52 Identities=25% Similarity=0.575 Sum_probs=45.7
Q ss_pred ceeecccCCCCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 3 PLDLIWNCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
|+++.|+...+.. +||.||+..++..+|.+.|+.||+|.+|+++.|.+| ++|
T Consensus 66 ~~rim~s~rd~~~---~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-~kg 117 (369)
T KOG0123|consen 66 PIRIMWSQRDPSL---VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-SKG 117 (369)
T ss_pred EEEeehhccCCce---eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-cee
Confidence 6778888875544 999999999999999999999999999999999877 554
No 35
>KOG0114|consensus
Probab=98.88 E-value=7.2e-09 Score=51.86 Aligned_cols=42 Identities=17% Similarity=0.407 Sum_probs=37.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
++...+-|||.|||+.+|.++..++|..||.|..+++-.+++
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~ 55 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE 55 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC
Confidence 455677899999999999999999999999999999876654
No 36
>PLN03213 repressor of silencing 3; Provisional
Probab=98.88 E-value=5.7e-09 Score=63.48 Aligned_cols=38 Identities=32% Similarity=0.573 Sum_probs=34.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
....+||||||++.+++++|+.+|+.||.|.++.|+++
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE 45 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT 45 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc
Confidence 35679999999999999999999999999999999944
No 37
>KOG0122|consensus
Probab=98.86 E-value=5.8e-09 Score=58.45 Aligned_cols=44 Identities=32% Similarity=0.551 Sum_probs=41.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+...|-|.||+.++++++|+++|.+||.|.++.+.+|+. |.+||
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kG 232 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKG 232 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccc
Confidence 455799999999999999999999999999999999999 99998
No 38
>KOG0131|consensus
Probab=98.83 E-value=3.2e-09 Score=57.35 Aligned_cols=56 Identities=27% Similarity=0.491 Sum_probs=46.4
Q ss_pred ceeecccCC---CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEE-EEEeCCC-CCCCC
Q psy10283 3 PLDLIWNCT---PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC-TVLKGPD-GTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~---~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~-~v~~d~~-g~~rG 58 (59)
|++++.++. ....+.++||+||.+.+++..|.+.|+.||.+.+. ++++|++ |.++|
T Consensus 80 pIrv~kas~~~~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~ 140 (203)
T KOG0131|consen 80 PIRVNKASAHQKNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKG 140 (203)
T ss_pred eeEEEecccccccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCC
Confidence 678888873 22356799999999999999999999999998774 7888888 77775
No 39
>smart00362 RRM_2 RNA recognition motif.
Probab=98.80 E-value=2.4e-08 Score=44.98 Aligned_cols=39 Identities=41% Similarity=0.748 Sum_probs=34.3
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~r 57 (59)
+|||+|||..+++++++++|++||.+..+.+..+. +.++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-~~~~ 39 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-GKSK 39 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-CCCC
Confidence 48999999999999999999999999999988776 4443
No 40
>KOG0117|consensus
Probab=98.80 E-value=5.5e-09 Score=62.44 Aligned_cols=48 Identities=23% Similarity=0.435 Sum_probs=41.6
Q ss_pred eeecccCCCCC-------CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 4 LDLIWNCTPLP-------PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 4 ~~~~~~~~~~~-------~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
+.|.||.+... ..+-|||.||+.++|++.|+++|++||.|++++.++|
T Consensus 240 ~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD 294 (506)
T KOG0117|consen 240 ITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD 294 (506)
T ss_pred ceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc
Confidence 56889988543 3457999999999999999999999999999988776
No 41
>KOG0107|consensus
Probab=98.71 E-value=3.7e-08 Score=53.06 Aligned_cols=38 Identities=21% Similarity=0.568 Sum_probs=35.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
..++||||||+..+++.+|+.+|..||.+..+.|...+
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP 46 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP 46 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC
Confidence 47899999999999999999999999999999887765
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.70 E-value=3.6e-08 Score=59.45 Aligned_cols=37 Identities=24% Similarity=0.406 Sum_probs=34.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
++.|||+|||..+++++|+++|++||.|.++.++.++
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k 38 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK 38 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC
Confidence 5689999999999999999999999999999988653
No 43
>KOG0108|consensus
Probab=98.68 E-value=3.2e-08 Score=59.34 Aligned_cols=42 Identities=21% Similarity=0.446 Sum_probs=41.0
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+.+||||+|++++++.|.++|+..|.|.+++++.|++ |++||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G 61 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKG 61 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCc
Confidence 8899999999999999999999999999999999999 99998
No 44
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.67 E-value=7.8e-08 Score=58.04 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=35.0
Q ss_pred CCCeEEEcCCCC-CCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 15 PDKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 15 ~~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
..+.|||+||+. .+++++|+++|+.||.|.++++++++
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~ 312 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK 312 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC
Confidence 467999999998 69999999999999999999999875
No 45
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.66 E-value=7.2e-08 Score=59.51 Aligned_cols=49 Identities=22% Similarity=0.381 Sum_probs=39.8
Q ss_pred ceeecccCCCCC-------CCCeEEEcCCCCCCcHHHHHHhhccC--CCeEEEEEEeC
Q psy10283 3 PLDLIWNCTPLP-------PDKKLFVGMLSKQQNEDDVRKIFAPF--GTIEECTVLKG 51 (59)
Q Consensus 3 ~~~~~~~~~~~~-------~~~~l~v~~L~~~~~~~~l~~~F~~~--G~i~~~~v~~d 51 (59)
.+.++|+.+... ..++|||+||+..+++++|+++|+.| |.|.+++++++
T Consensus 213 ~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg 270 (578)
T TIGR01648 213 VIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD 270 (578)
T ss_pred eEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC
Confidence 356777765321 34679999999999999999999999 99999987654
No 46
>KOG0105|consensus
Probab=98.63 E-value=3.6e-08 Score=53.76 Aligned_cols=36 Identities=22% Similarity=0.555 Sum_probs=32.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEe
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
..+++||||||.++.+.+++++|.+||.|.++.+..
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~ 40 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKN 40 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEecc
Confidence 578999999999999999999999999999987643
No 47
>KOG0145|consensus
Probab=98.61 E-value=9.2e-08 Score=54.52 Aligned_cols=44 Identities=27% Similarity=0.589 Sum_probs=40.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
...+|.|..||..+++++++.+|+..|+|++|++++|+- |++-|
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLG 84 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLG 84 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccc
Confidence 356799999999999999999999999999999999997 87765
No 48
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.60 E-value=2.5e-07 Score=41.76 Aligned_cols=37 Identities=35% Similarity=0.745 Sum_probs=33.7
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 54 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g 54 (59)
+++|++||..+++++++++|+.+|.+..+.+..++.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~ 37 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT 37 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC
Confidence 4899999999999999999999999999999887654
No 49
>smart00360 RRM RNA recognition motif.
Probab=98.58 E-value=1.6e-07 Score=42.00 Aligned_cols=38 Identities=37% Similarity=0.716 Sum_probs=33.7
Q ss_pred EcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 21 VGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 21 v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
|+|||..+++++|+++|++||.+..+.+..++. ++++|
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~ 39 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKG 39 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCc
Confidence 578999999999999999999999999998876 66665
No 50
>KOG0147|consensus
Probab=98.58 E-value=4e-08 Score=59.76 Aligned_cols=42 Identities=43% Similarity=0.680 Sum_probs=39.5
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCCC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKER 59 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG~ 59 (59)
++|||||.+++++++|+.+|++||.|+.+.+++|.+ |+++|.
T Consensus 280 rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgf 322 (549)
T KOG0147|consen 280 RLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGF 322 (549)
T ss_pred hhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCc
Confidence 499999999999999999999999999999999986 999883
No 51
>KOG1548|consensus
Probab=98.53 E-value=3.6e-07 Score=53.48 Aligned_cols=51 Identities=16% Similarity=0.304 Sum_probs=42.1
Q ss_pred ccCCCCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEE--------EEEEeCCCCCCCC
Q psy10283 8 WNCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE--------CTVLKGPDGTSKE 58 (59)
Q Consensus 8 ~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~--------~~v~~d~~g~~rG 58 (59)
|....+..+..|||.|||.++|.+++.++|+.||-|.+ |++.++.+|+.||
T Consensus 126 ~~~~~~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKG 184 (382)
T KOG1548|consen 126 WFNPEPKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKG 184 (382)
T ss_pred ccCcccccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccC
Confidence 44444456778999999999999999999999998766 7778887788877
No 52
>KOG0124|consensus
Probab=98.52 E-value=5.4e-08 Score=57.57 Aligned_cols=43 Identities=33% Similarity=0.602 Sum_probs=41.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
-|++|||.+.+...++.++..|.+||+|.++.+.+|+. +++||
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKg 156 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKG 156 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccc
Confidence 47899999999999999999999999999999999998 99987
No 53
>KOG0109|consensus
Probab=98.51 E-value=1.2e-07 Score=54.47 Aligned_cols=48 Identities=23% Similarity=0.415 Sum_probs=39.8
Q ss_pred eecccCCCCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 5 DLIWNCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 5 ~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
++..+.+-.....+++|||+.+.++..+++..|++||.+.+|++++|-
T Consensus 67 nVeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy 114 (346)
T KOG0109|consen 67 NVEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDY 114 (346)
T ss_pred EEEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecce
Confidence 344444444467899999999999999999999999999999998773
No 54
>KOG0131|consensus
Probab=98.50 E-value=1.3e-07 Score=51.33 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=41.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+.....+||||||+..++++.|.++|-+.|+|.++++++|+. ..++|
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qG 52 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQG 52 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccc
Confidence 345678999999999999999999999999999999999987 65555
No 55
>KOG4205|consensus
Probab=98.49 E-value=3e-07 Score=53.28 Aligned_cols=43 Identities=26% Similarity=0.571 Sum_probs=40.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.+++|||.||..++++++++.|++||.|.++.++.|.. .++||
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rg 140 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRG 140 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeeccccccccc
Confidence 45899999999999999999999999999999999998 87776
No 56
>KOG0533|consensus
Probab=98.49 E-value=3.1e-07 Score=51.66 Aligned_cols=45 Identities=24% Similarity=0.350 Sum_probs=41.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG~ 59 (59)
...+++|.|||+.+.+++|+++|..||.+..+-+-.|+.|++.|+
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gt 126 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGT 126 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCcc
Confidence 347899999999999999999999999999999999988988875
No 57
>KOG4207|consensus
Probab=98.45 E-value=2.7e-07 Score=51.06 Aligned_cols=44 Identities=20% Similarity=0.369 Sum_probs=40.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....|-|-||.+.++.++|+.+|++||.|.+|.|+.|+. +.++|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRg 56 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRG 56 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccc
Confidence 456788999999999999999999999999999999998 88887
No 58
>KOG0111|consensus
Probab=98.41 E-value=1.3e-07 Score=52.77 Aligned_cols=45 Identities=22% Similarity=0.445 Sum_probs=42.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
...++||||+|...+++.-|...|-+||.|.++.++.|.+ +++||
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRg 53 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRG 53 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccc
Confidence 4578899999999999999999999999999999999988 89887
No 59
>KOG4212|consensus
Probab=98.38 E-value=7.8e-07 Score=53.72 Aligned_cols=44 Identities=16% Similarity=0.354 Sum_probs=40.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhc-cCCCeEEEEEEeCCCCCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFA-PFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~-~~G~i~~~~v~~d~~g~~rG 58 (59)
..+.+||.|+|++..|.+|+++|. .-|+|+-|.+++|..||+||
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rG 87 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARG 87 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCC
Confidence 345699999999999999999995 68999999999999999997
No 60
>KOG0124|consensus
Probab=98.37 E-value=7.9e-07 Score=52.79 Aligned_cols=43 Identities=23% Similarity=0.582 Sum_probs=39.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
-.++||..+..+.++++++.+|+.||+|..|.+.+++. +.+||
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkG 253 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKG 253 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccc
Confidence 35899999999999999999999999999999999998 77776
No 61
>KOG0127|consensus
Probab=98.35 E-value=8.9e-07 Score=54.50 Aligned_cols=43 Identities=19% Similarity=0.369 Sum_probs=40.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+.+|||++||++++.++|.++|+.+|+|..+.++.+.. +.+||
T Consensus 5 g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RG 48 (678)
T KOG0127|consen 5 GATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRG 48 (678)
T ss_pred CceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccC
Confidence 37899999999999999999999999999999999988 77777
No 62
>KOG0146|consensus
Probab=98.26 E-value=1.7e-06 Score=49.60 Aligned_cols=45 Identities=27% Similarity=0.456 Sum_probs=41.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 57 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~r 57 (59)
.+++|+|||..||.+..+.+|-..|-+||.|.+.++..|+. +.+|
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSK 327 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSK 327 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccccc
Confidence 34789999999999999999999999999999999999987 6665
No 63
>KOG4206|consensus
Probab=98.24 E-value=3e-06 Score=47.04 Aligned_cols=42 Identities=19% Similarity=0.535 Sum_probs=34.2
Q ss_pred CCeEEEcCCCCCCcHHHHHH----hhccCCCeEEEEEEeCCCCCCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRK----IFAPFGTIEECTVLKGPDGTSKER 59 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~----~F~~~G~i~~~~v~~d~~g~~rG~ 59 (59)
..++||.||+..+..++|+. +|++||+|.++..... .+.|||
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt--~KmRGQ 54 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKT--PKMRGQ 54 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCC--CCccCc
Confidence 34999999999999988877 9999999999876544 456664
No 64
>KOG0415|consensus
Probab=98.16 E-value=2.4e-06 Score=50.54 Aligned_cols=42 Identities=36% Similarity=0.714 Sum_probs=38.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 56 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~ 56 (59)
...-|||..|.+-++.++|.-+|+.||.|..|.|++|.. |.+
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgds 280 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDS 280 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccch
Confidence 456799999999999999999999999999999999987 643
No 65
>KOG0123|consensus
Probab=98.03 E-value=1.1e-05 Score=47.91 Aligned_cols=45 Identities=31% Similarity=0.564 Sum_probs=41.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
....+|||.|++..++.+.|++.|+.||+|..++++.+..|+++|
T Consensus 268 ~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG 312 (369)
T KOG0123|consen 268 LQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKVMVDENGKSKG 312 (369)
T ss_pred ccccccccccCccccchhHHHHHHhcccceeeEEEEeccCCCccc
Confidence 356789999999999999999999999999999999998888887
No 66
>KOG0132|consensus
Probab=97.96 E-value=9.4e-06 Score=51.68 Aligned_cols=37 Identities=27% Similarity=0.570 Sum_probs=33.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
+++||||.|+..+++.+|..+|+.||.|.++.++-.+
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R 457 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR 457 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC
Confidence 5689999999999999999999999999998765443
No 67
>KOG4212|consensus
Probab=97.93 E-value=1e-05 Score=49.10 Aligned_cols=42 Identities=17% Similarity=0.254 Sum_probs=36.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
..++|||.|||+++||..|++-|..||.|..+.|+. .|+++|
T Consensus 535 Ka~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--~GkskG 576 (608)
T KOG4212|consen 535 KACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--NGKSKG 576 (608)
T ss_pred cccEEEEecCCccccHHHHHHHHHhccceehhhhhc--cCCccc
Confidence 578899999999999999999999999999888832 266665
No 68
>KOG4454|consensus
Probab=97.92 E-value=4.2e-06 Score=46.80 Aligned_cols=47 Identities=19% Similarity=0.306 Sum_probs=40.8
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCC
Q psy10283 11 TPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57 (59)
Q Consensus 11 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~r 57 (59)
++.+..++|||+|+...++++.|.++|-+.|+|.++.|..+++++.|
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~k 50 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQK 50 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCc
Confidence 34457889999999999999999999999999999999888775543
No 69
>KOG0130|consensus
Probab=97.87 E-value=2.1e-05 Score=41.28 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=37.5
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
-|||.++....+++++.+.|..||+|..+.+-.|+. |-.||
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KG 115 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKG 115 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccc
Confidence 589999999999999999999999999999999887 76665
No 70
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.87 E-value=4.1e-05 Score=46.25 Aligned_cols=26 Identities=23% Similarity=0.474 Sum_probs=23.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPF 40 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~ 40 (59)
..++|||||||+.+++++|.++|..+
T Consensus 174 ~~r~lyVgnLp~~~t~~~l~~~F~~~ 199 (509)
T TIGR01642 174 QARRLYVGGIPPEFVEEAVVDFFNDL 199 (509)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999864
No 71
>KOG0151|consensus
Probab=97.78 E-value=3.8e-05 Score=48.78 Aligned_cols=39 Identities=21% Similarity=0.421 Sum_probs=35.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
..+++|++||++.+++..|...|..||++..++++..+.
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRt 211 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRT 211 (877)
T ss_pred cccceeeecCCccccHHHHHHHhcccCcccceeeecccc
Confidence 567999999999999999999999999999999987653
No 72
>KOG4209|consensus
Probab=97.73 E-value=3.2e-05 Score=43.40 Aligned_cols=44 Identities=23% Similarity=0.254 Sum_probs=40.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....+|+||+.+.++.++++..|+.||.+..+.+..|.. |++||
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~ 144 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKG 144 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcce
Confidence 567899999999999999999999999999999999988 77776
No 73
>KOG0116|consensus
Probab=97.72 E-value=4.1e-05 Score=46.16 Aligned_cols=35 Identities=23% Similarity=0.437 Sum_probs=31.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEe
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
...|||+|||++++.+.|+++|..||.|.+..|..
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v 322 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV 322 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEE
Confidence 34599999999999999999999999999987754
No 74
>KOG0153|consensus
Probab=97.72 E-value=9.1e-05 Score=43.71 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=33.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
.-.+||||+|...+++.++++.|.+||+|..+.++..+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~ 264 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK 264 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc
Confidence 45689999999999999999999999999999877553
No 75
>KOG0110|consensus
Probab=97.58 E-value=6.5e-05 Score=47.46 Aligned_cols=43 Identities=23% Similarity=0.478 Sum_probs=37.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..+|.|.|+|+..+-.+++.+|..||.+.+++++.-.. +.+||
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rG 656 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRG 656 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhcc
Confidence 45899999999999999999999999999999987744 55555
No 76
>KOG4661|consensus
Probab=97.58 E-value=7.2e-05 Score=46.93 Aligned_cols=39 Identities=21% Similarity=0.468 Sum_probs=35.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
-.++|||.+|...+...+|+.+|++||+|.-++|+.+..
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaR 442 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNAR 442 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCC
Confidence 467899999999999999999999999999999998753
No 77
>KOG0147|consensus
Probab=97.38 E-value=2.7e-05 Score=47.85 Aligned_cols=45 Identities=16% Similarity=0.373 Sum_probs=41.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKER 59 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG~ 59 (59)
..+++|+-.++...+..+|.++|+.+|+|.+++++.|+. ++++||
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi 223 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGI 223 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcce
Confidence 356788888999999999999999999999999999998 999986
No 78
>KOG0106|consensus
Probab=97.19 E-value=0.00037 Score=38.90 Aligned_cols=32 Identities=25% Similarity=0.641 Sum_probs=29.5
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEE
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v 48 (59)
.++|||+||..+.+.+++.+|..||.+.++.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m 33 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM 33 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee
Confidence 47999999999999999999999999998764
No 79
>KOG4660|consensus
Probab=97.17 E-value=0.00041 Score=42.96 Aligned_cols=34 Identities=26% Similarity=0.412 Sum_probs=31.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEE
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v 48 (59)
..+.|+|-|||..+++++|..+|+.||+|.+++-
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~ 107 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE 107 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc
Confidence 5678999999999999999999999999998653
No 80
>KOG0226|consensus
Probab=97.12 E-value=0.00054 Score=39.20 Aligned_cols=45 Identities=27% Similarity=0.519 Sum_probs=41.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..+.+||+|.|..+++.+.|...|.+|-.-...++++|+. |+++|
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkg 233 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKG 233 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhcccccccccccccc
Confidence 3578999999999999999999999999999999999988 99987
No 81
>KOG0129|consensus
Probab=97.12 E-value=0.002 Score=39.77 Aligned_cols=47 Identities=23% Similarity=0.466 Sum_probs=39.2
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhc-cCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFA-PFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~-~~G~i~~~~v~~d~~-g~~rG 58 (59)
+....++||||.||..++.++|-.+|+ .||.|+-+-|=.|++ +=++|
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkG 414 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKG 414 (520)
T ss_pred ccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCC
Confidence 344678999999999999999999998 799999988888865 54444
No 82
>KOG3152|consensus
Probab=97.09 E-value=0.00086 Score=38.35 Aligned_cols=35 Identities=9% Similarity=0.271 Sum_probs=31.6
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
.-+|++++|+.+....|+++|+.||.|-++.+-..
T Consensus 75 GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE 109 (278)
T KOG3152|consen 75 GVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPE 109 (278)
T ss_pred eEEEeccCCCccCHHHHHHHHHhccccceEEecch
Confidence 45999999999999999999999999999887544
No 83
>KOG4208|consensus
Probab=97.01 E-value=0.0017 Score=36.07 Aligned_cols=43 Identities=21% Similarity=0.402 Sum_probs=37.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccC-CCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~~~v~~d~~-g~~rG 58 (59)
..-+|+..+|+.+.+..+...|.+| |.+.++++.+++. |.|||
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKg 93 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKG 93 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCc
Confidence 3458899999999999999999887 8888888889988 99987
No 84
>KOG0115|consensus
Probab=96.86 E-value=0.0013 Score=37.60 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=34.6
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGT 55 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~ 55 (59)
..|||.||+..++.+.+...|+.||.|....+..|..++
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k 70 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGK 70 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccc
Confidence 579999999999999999999999999998887776544
No 85
>KOG4210|consensus
Probab=96.85 E-value=0.0016 Score=37.70 Aligned_cols=43 Identities=28% Similarity=0.472 Sum_probs=37.7
Q ss_pred CCeEE-EcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLF-VGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~-v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++| ++++++.++.++|+..|..+|.|..+++..++. |.++|
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg 228 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKG 228 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhh
Confidence 44566 999999999999999999999999999998887 77765
No 86
>KOG0128|consensus
Probab=96.84 E-value=0.00077 Score=43.63 Aligned_cols=44 Identities=9% Similarity=0.191 Sum_probs=40.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG~ 59 (59)
...++|.|.|+..|.+.++.+++.+|.+.+.+++..++|+++|+
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~ 779 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGK 779 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccccc
Confidence 45799999999999999999999999999999998888999885
No 87
>KOG0129|consensus
Probab=96.74 E-value=0.0017 Score=40.12 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=29.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEE
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
..++||||.||..++|+.+...|..||.+. +.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP 291 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWP 291 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecC
Confidence 467899999999999999999999999854 3444
No 88
>KOG0120|consensus
Probab=96.65 E-value=0.0025 Score=39.42 Aligned_cols=44 Identities=32% Similarity=0.579 Sum_probs=40.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
...++|+++||...++..+.++.+.||.+....++.|.. |.++|
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg 332 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKG 332 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccc
Confidence 567899999999999999999999999999999999988 88776
No 89
>smart00361 RRM_1 RNA recognition motif.
Probab=96.62 E-value=0.0038 Score=28.69 Aligned_cols=29 Identities=14% Similarity=0.362 Sum_probs=22.2
Q ss_pred HHHHHHhhc----cCCCeEEEE-EEeCCC---CCCCC
Q psy10283 30 EDDVRKIFA----PFGTIEECT-VLKGPD---GTSKE 58 (59)
Q Consensus 30 ~~~l~~~F~----~~G~i~~~~-v~~d~~---g~~rG 58 (59)
+++|+++|+ .||.|.++. ++.++. |++||
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG 38 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRG 38 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcE
Confidence 567888888 999999995 666653 66666
No 90
>KOG4849|consensus
Probab=96.62 E-value=0.00055 Score=40.89 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=33.4
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCC--CeEEEEEEeCCC-CCCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFG--TIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G--~i~~~~v~~d~~-g~~rG 58 (59)
-.+|||||-+.+|+++|.+.....| .+.+++...++. |++||
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG 125 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKG 125 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccc
Confidence 3589999999999999988877665 466666666666 88887
No 91
>KOG1457|consensus
Probab=96.44 E-value=0.0026 Score=36.09 Aligned_cols=31 Identities=16% Similarity=0.430 Sum_probs=26.9
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEE
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v 48 (59)
++||.||..+++|++|+.+|+.|.-...++|
T Consensus 212 tlfianl~~~~~ed~l~~~~~~~~gf~~l~~ 242 (284)
T KOG1457|consen 212 TLFIANLGPNCTEDELKQLLSRYPGFHILKI 242 (284)
T ss_pred hHhhhccCCCCCHHHHHHHHHhCCCceEEEE
Confidence 6999999999999999999999966555553
No 92
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=96.37 E-value=0.0056 Score=26.73 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=15.9
Q ss_pred HHHhhccCCCeEEEEEEeCC
Q psy10283 33 VRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 33 l~~~F~~~G~i~~~~v~~d~ 52 (59)
|.++|++||.|.++.+..+.
T Consensus 1 L~~~f~~fG~V~~i~~~~~~ 20 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK 20 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS
T ss_pred ChHHhCCcccEEEEEEEeCC
Confidence 57899999999999886654
No 93
>KOG4211|consensus
Probab=96.24 E-value=0.023 Score=35.22 Aligned_cols=43 Identities=16% Similarity=0.251 Sum_probs=32.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
....-|-+..||+++|++++.++|+.++ |+.+.+.++. |+..|
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~-Gr~sG 50 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRN-GRPSG 50 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccC-CCcCc
Confidence 3445567789999999999999999986 7776555542 55544
No 94
>KOG1190|consensus
Probab=96.16 E-value=0.011 Score=36.06 Aligned_cols=37 Identities=27% Similarity=0.489 Sum_probs=32.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
..+-+.++|||.+++|+++-+++.+||+|..+...+.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkG 63 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKG 63 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeecc
Confidence 4567899999999999999999999999999876543
No 95
>KOG0110|consensus
Probab=96.16 E-value=0.0069 Score=38.78 Aligned_cols=37 Identities=30% Similarity=0.434 Sum_probs=33.5
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
++||+.||++.++.+++...|...|.|.++.|.+.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd 552 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKD 552 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccc
Confidence 3499999999999999999999999999998877665
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=95.30 E-value=0.03 Score=27.99 Aligned_cols=33 Identities=18% Similarity=0.389 Sum_probs=20.2
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEe
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
-|.+.+++..++.++|++.|+.||.|.-+.+..
T Consensus 3 il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~ 35 (105)
T PF08777_consen 3 ILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSR 35 (105)
T ss_dssp EEEEEE--SS--HHHHHHHT-SS--EEEEE--T
T ss_pred EEEEecCCCCcCHHHHHHHHHhcCCcceEEecC
Confidence 467777999999999999999999888776544
No 97
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.23 E-value=0.043 Score=26.67 Aligned_cols=29 Identities=28% Similarity=0.587 Sum_probs=19.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEE 45 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~ 45 (59)
..-.+++ .|......+|.++|++||.|.-
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~V 37 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYV 37 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEE
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEE
Confidence 3344454 8899999999999999999763
No 98
>KOG1855|consensus
Probab=95.00 E-value=0.047 Score=33.54 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=33.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
..+.|-+-|||.+-.-+.|.++|+.+|.|..++|...
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckP 266 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKP 266 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCC
Confidence 5678889999999888999999999999999998766
No 99
>KOG1457|consensus
Probab=94.97 E-value=0.11 Score=29.76 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=27.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEE
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v 48 (59)
..++|||.+||.++...+|..+|..|---+.+.+
T Consensus 33 ~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslL 66 (284)
T KOG1457|consen 33 AVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLL 66 (284)
T ss_pred ccceeeeccCCcccCHHHHHHHhccCCCccceee
Confidence 4789999999999999999999998844444433
No 100
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=94.63 E-value=0.063 Score=23.61 Aligned_cols=32 Identities=28% Similarity=0.318 Sum_probs=22.3
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEE
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
+.|-|.+.+....+ .+...|.+||+|.+..+.
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~ 33 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVP 33 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcC
Confidence 34566666655554 455688899999998765
No 101
>KOG4211|consensus
Probab=94.60 E-value=0.095 Score=32.66 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=32.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEE-EEEEeCCCCCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEE-CTVLKGPDGTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~-~~v~~d~~g~~rG 58 (59)
..-|-+..||+.++++++.++|+-.--+.. +-++.|+.|++-|
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tG 146 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTG 146 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCccc
Confidence 445777999999999999999998765555 4456666566543
No 102
>KOG1995|consensus
Probab=94.32 E-value=0.057 Score=32.28 Aligned_cols=44 Identities=20% Similarity=0.345 Sum_probs=34.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEE--------EEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE--------CTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~--------~~v~~d~~-g~~rG 58 (59)
...++||-.|+..+++..+.++|.++|.|.. +.+-+|++ +++||
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KG 117 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKG 117 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCC
Confidence 5668999999999999999999999997754 44455555 55554
No 103
>KOG0112|consensus
Probab=93.69 E-value=0.022 Score=37.57 Aligned_cols=37 Identities=27% Similarity=0.527 Sum_probs=32.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
..++||+|||+..+++.+++..|..+|.+.++.+-..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP 407 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP 407 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccC
Confidence 4568999999999999999999999999999876543
No 104
>KOG0105|consensus
Probab=93.64 E-value=0.19 Score=28.08 Aligned_cols=38 Identities=13% Similarity=0.163 Sum_probs=33.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
...++-|..||.+-++++|++..-..|.++-..+.+|-
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg 151 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDG 151 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeeccc
Confidence 34579999999999999999999999999888877663
No 105
>KOG4206|consensus
Probab=93.49 E-value=0.21 Score=28.21 Aligned_cols=38 Identities=18% Similarity=0.479 Sum_probs=32.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
+...-+|+.|||..++.+.+..+|.+|....+++++..
T Consensus 144 ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~ 181 (221)
T KOG4206|consen 144 PPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP 181 (221)
T ss_pred CCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC
Confidence 35667999999999999999999999988888776553
No 106
>KOG4676|consensus
Probab=93.47 E-value=0.061 Score=32.83 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=31.6
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
.-|.|.||.+..+.++++.+|...|+|.+++++-+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~ 42 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPN 42 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCC
Confidence 36889999999999999999999999999887654
No 107
>KOG1190|consensus
Probab=93.19 E-value=0.23 Score=30.61 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=32.0
Q ss_pred CCeEEEcCCC-CCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 16 DKKLFVGMLS-KQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 16 ~~~l~v~~L~-~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
..-|.|.||. ..+|.+.|.-+|+.||.|.+++|+.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk 335 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK 335 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC
Confidence 4667888886 4579999999999999999999988753
No 108
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=93.15 E-value=0.38 Score=23.86 Aligned_cols=42 Identities=5% Similarity=0.040 Sum_probs=32.1
Q ss_pred CeEEEcCCCCCCcHHHHHHhhcc--CCCeEEEEEEeCCC-CCCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAP--FGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~--~G~i~~~~v~~d~~-g~~rG 58 (59)
++|-+.|+|...+.+.|.+++.. .|...=+.++.|.. +.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~G 46 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLG 46 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceE
Confidence 47889999999999999888754 36677778888876 44444
No 109
>KOG0128|consensus
Probab=91.36 E-value=0.0071 Score=39.43 Aligned_cols=43 Identities=30% Similarity=0.482 Sum_probs=35.5
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKER 59 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG~ 59 (59)
.++|+.||+..+.+.++...|+.+|.+..+++..... ++.||+
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~ 711 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGK 711 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccc
Confidence 3689999999999999999999999998887764444 666663
No 110
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=91.30 E-value=0.47 Score=23.22 Aligned_cols=29 Identities=17% Similarity=0.360 Sum_probs=18.0
Q ss_pred eEEEcCCCCCCcHHH----HHHhhccCC-CeEEE
Q psy10283 18 KLFVGMLSKQQNEDD----VRKIFAPFG-TIEEC 46 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~----l~~~F~~~G-~i~~~ 46 (59)
-|||.|||...+... |+.++..+| +|..+
T Consensus 4 ~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v 37 (90)
T PF11608_consen 4 LLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV 37 (90)
T ss_dssp EEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-
T ss_pred EEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE
Confidence 589999999887654 667777884 66654
No 111
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=90.86 E-value=0.4 Score=21.98 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=15.6
Q ss_pred HHHHHhhccCCCeEEEEE
Q psy10283 31 DDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 31 ~~l~~~F~~~G~i~~~~v 48 (59)
.++++.|+.+|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 578999999999998765
No 112
>KOG0112|consensus
Probab=88.54 E-value=1 Score=30.36 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=30.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEE
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v 48 (59)
...+++|+++|...+....|...|..||.|..+.+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy 487 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY 487 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeec
Confidence 35678999999999999999999999999988653
No 113
>KOG0106|consensus
Probab=87.42 E-value=0.59 Score=26.39 Aligned_cols=32 Identities=25% Similarity=0.342 Sum_probs=28.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEE
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~ 46 (59)
..+.+.+-+++..+.+.+|.+.|.++|.+...
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~ 129 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYV 129 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchh
Confidence 46778899999999999999999999998443
No 114
>KOG4454|consensus
Probab=86.51 E-value=0.19 Score=28.68 Aligned_cols=42 Identities=24% Similarity=0.442 Sum_probs=35.3
Q ss_pred CCeEEEcC----CCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCC
Q psy10283 16 DKKLFVGM----LSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57 (59)
Q Consensus 16 ~~~l~v~~----L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~r 57 (59)
..+++.|+ |...++++.+...|+..|.+...++..+.+|+.+
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnr 125 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNR 125 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCcc
Confidence 45677888 8888999999999999999999999888775544
No 115
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=84.97 E-value=2 Score=24.95 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=27.1
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
....|+|||+.++..-+..+++..-.+.+..+|..
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 35668999999999999998887666656666544
No 116
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=84.85 E-value=1.1 Score=27.37 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=25.5
Q ss_pred CeEEEcCCCCCCcHHH----H--HHhhccCCCeEEEEEEe
Q psy10283 17 KKLFVGMLSKQQNEDD----V--RKIFAPFGTIEECTVLK 50 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~----l--~~~F~~~G~i~~~~v~~ 50 (59)
.-+||-+|++.+-.++ | .+.|.+||.|.++.|-+
T Consensus 115 NLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk 154 (480)
T COG5175 115 NLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK 154 (480)
T ss_pred ceeEEecCCCCCCcccccccccchhhhhhccceeEEEecc
Confidence 3489989988875543 3 36899999999886643
No 117
>KOG1456|consensus
Probab=84.59 E-value=2.8 Score=25.94 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=32.9
Q ss_pred CCCeEEEcCCCCCC-cHHHHHHhhccCCCeEEEEEEeCCCC
Q psy10283 15 PDKKLFVGMLSKQQ-NEDDVRKIFAPFGTIEECTVLKGPDG 54 (59)
Q Consensus 15 ~~~~l~v~~L~~~~-~~~~l~~~F~~~G~i~~~~v~~d~~g 54 (59)
.++-+-|.+|.... .-+.|..+|..||.|++++.|+.+.|
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g 326 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG 326 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc
Confidence 45678888998766 44778999999999999999987654
No 118
>KOG2891|consensus
Probab=83.51 E-value=1.5 Score=26.16 Aligned_cols=36 Identities=22% Similarity=0.431 Sum_probs=27.5
Q ss_pred CCCCeEEEcCCCCC------------CcHHHHHHhhccCCCeEEEEEE
Q psy10283 14 PPDKKLFVGMLSKQ------------QNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 14 ~~~~~l~v~~L~~~------------~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
....++|..++|.. -+++.|+..|+.||.|..+.|+
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 34557777777643 3567799999999999998875
No 119
>KOG2314|consensus
Probab=81.77 E-value=0.96 Score=29.16 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=33.1
Q ss_pred CCCCeEEEcCCCCCCcH--H----HHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNE--D----DVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~--~----~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
....-++|.|+|---.. + -|.++|+++|++.....+.+.+|..+|
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG 106 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKG 106 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeee
Confidence 34556888888754322 2 255689999999999999888866777
No 120
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=80.23 E-value=1.8 Score=25.74 Aligned_cols=38 Identities=18% Similarity=0.311 Sum_probs=32.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
..+.|...|+...++-..+-.-|.+||+|+++.++.+.
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSN 51 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCC
Confidence 34567788999888888888999999999999998776
No 121
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=78.57 E-value=4 Score=20.32 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=20.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEE
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECT 47 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~ 47 (59)
....|.|-+-|... ...+-+.|++||.|.+..
T Consensus 5 ~~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~ 36 (100)
T PF05172_consen 5 SETWVTVFGFPPSA-SNQVLRHFSSFGTILEHF 36 (100)
T ss_dssp GCCEEEEE---GGG-HHHHHHHHHCCS-EECEE
T ss_pred CCeEEEEEccCHHH-HHHHHHHHHhcceEEEee
Confidence 34567777777774 455678999999998764
No 122
>KOG1365|consensus
Probab=77.40 E-value=6.7 Score=24.47 Aligned_cols=43 Identities=12% Similarity=0.148 Sum_probs=33.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEE---EEEEeCCCCCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEE---CTVLKGPDGTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~---~~v~~d~~g~~rG 58 (59)
..-+-..+||+..+.+++.++|..|..-.+ +.++.+.+|++.|
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSG 325 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSG 325 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcCh
Confidence 345778999999999999999988865443 5677776677665
No 123
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=77.16 E-value=1.1 Score=24.35 Aligned_cols=29 Identities=14% Similarity=0.264 Sum_probs=19.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhcc-CCCe
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAP-FGTI 43 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~-~G~i 43 (59)
...+|-|.+||+..+++++.+..++ ++.-
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~ 35 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDE 35 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccc
Confidence 4568999999999999998887776 5554
No 124
>KOG4008|consensus
Probab=76.60 E-value=2.5 Score=24.42 Aligned_cols=33 Identities=15% Similarity=0.349 Sum_probs=28.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEE
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~ 46 (59)
.....+|+-|+|..++++.|..+.+++|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 356789999999999999999999999865543
No 125
>KOG1456|consensus
Probab=75.00 E-value=12 Score=23.28 Aligned_cols=35 Identities=26% Similarity=0.360 Sum_probs=30.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEE
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
.+.-+.|.+|-..+++.+|-+..+.||.|.-+..+
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~ 64 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCM 64 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEec
Confidence 34568999999999999999999999999887654
No 126
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=74.70 E-value=2.5 Score=17.31 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=10.0
Q ss_pred CCCcHHHHHHhhccCCC
Q psy10283 26 KQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 26 ~~~~~~~l~~~F~~~G~ 42 (59)
..++++.|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 35788899999987653
No 127
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=73.95 E-value=1 Score=22.88 Aligned_cols=34 Identities=26% Similarity=0.382 Sum_probs=17.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccC-CCeEEEEE
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTV 48 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~~~v 48 (59)
....+|||++|..............| |+|.++.+
T Consensus 91 ~~~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~i 125 (131)
T PF00054_consen 91 VDGPLYVGGLPSSSSRPRPLPISPGFKGCIRNLSI 125 (131)
T ss_dssp ECSEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEE
T ss_pred cccCEEEccCCchhhcccccccCCCeeEEEEEeEE
Confidence 34569999999222211111222233 77777654
No 128
>KOG1365|consensus
Probab=73.44 E-value=14 Score=23.13 Aligned_cols=41 Identities=24% Similarity=0.305 Sum_probs=29.1
Q ss_pred eEEEcCCCCCCcHHHHHHhhccC----CCeEEEEEEeCCCCCCCC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPF----GTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~----G~i~~~~v~~d~~g~~rG 58 (59)
-+-..+||+++++.++.++|.+- |-.+.+-.+..++|+.-|
T Consensus 163 ivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTG 207 (508)
T KOG1365|consen 163 IVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTG 207 (508)
T ss_pred EEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCccc
Confidence 35568999999999999999632 345556566666666544
No 129
>KOG2193|consensus
Probab=72.30 E-value=3.2 Score=26.14 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.1
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPF 40 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~ 40 (59)
.++|+|||....+..+|+.+|...
T Consensus 2 nklyignL~p~~~psdl~svfg~a 25 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA 25 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc
Confidence 468999999999999999999643
No 130
>KOG4307|consensus
Probab=71.36 E-value=8.4 Score=25.89 Aligned_cols=40 Identities=13% Similarity=0.214 Sum_probs=28.5
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEE-EEEEeCCCCCCC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEE-CTVLKGPDGTSK 57 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~-~~v~~d~~g~~r 57 (59)
-|-+.|.|++++-+++.++|..|-.+-. +.+-++.+|+.-
T Consensus 869 V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~G~pT 909 (944)
T KOG4307|consen 869 VLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDDGVPT 909 (944)
T ss_pred EEEecCCCccccHHHHHHHhcccccCCCceeEeecCCCCcc
Confidence 5667999999999999999999965433 333344335543
No 131
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=70.14 E-value=4.2 Score=19.87 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=20.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhc
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFA 38 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~ 38 (59)
..+++-+.++|...+++.|++..+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 567899999999999999887644
No 132
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=69.67 E-value=16 Score=21.22 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=27.6
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEE-EEEeCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEEC-TVLKGP 52 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~-~v~~d~ 52 (59)
-++-+.-||..-.++-++.+|++.|--..+ .+..|.
T Consensus 119 L~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~ 155 (245)
T PF12623_consen 119 LEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDE 155 (245)
T ss_pred eEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCc
Confidence 357788899998999999999999964443 455554
No 133
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=69.13 E-value=6.5 Score=22.57 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=23.8
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
-..|+|+|+.++..-+..+......+..+.++..
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~Q 140 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQ 140 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeH
Confidence 5678999999998888888754323455555543
No 134
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=65.19 E-value=7.2 Score=22.89 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=24.9
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
.+.|+|+|+.++...+..+++....+....+|..
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~Q 136 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQ 136 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeeeeh
Confidence 4678999999999888888865445555555543
No 135
>KOG4307|consensus
Probab=64.79 E-value=8.3 Score=25.90 Aligned_cols=40 Identities=15% Similarity=0.109 Sum_probs=30.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEE-EEEEeCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE-CTVLKGPDG 54 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~-~~v~~d~~g 54 (59)
...-|||-.||..+++.++-+.|...-.|++ +.+..-+.+
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~ 473 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTD 473 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcc
Confidence 4567999999999999999999988777777 554444333
No 136
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=63.50 E-value=8.7 Score=21.91 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=23.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhc--cCCCeEEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFA--PFGTIEEC 46 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~--~~G~i~~~ 46 (59)
..-+.|||||+.++..-+..++. .+|...-+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~ 129 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMV 129 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceE
Confidence 44578899999999998888876 46654443
No 137
>PF15063 TC1: Thyroid cancer protein 1
Probab=62.61 E-value=4.4 Score=19.37 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=22.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~ 42 (59)
.++--+.|+-.+++...|+.+|..-|.
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD 51 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGD 51 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccc
Confidence 445567889999999999999998875
No 138
>KOG2318|consensus
Probab=59.48 E-value=14 Score=24.25 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=30.5
Q ss_pred CCCeEEEcCCCCCC-cHHHHHHhhccC----CCeEEEEEEeCCCCC
Q psy10283 15 PDKKLFVGMLSKQQ-NEDDVRKIFAPF----GTIEECTVLKGPDGT 55 (59)
Q Consensus 15 ~~~~l~v~~L~~~~-~~~~l~~~F~~~----G~i~~~~v~~d~~g~ 55 (59)
..++|-|.|+.+.. ...+|.-+|+.| |.|.+|.|....-|+
T Consensus 173 ~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGk 218 (650)
T KOG2318|consen 173 ETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGK 218 (650)
T ss_pred ccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhH
Confidence 46789999999764 667888888776 689998875443244
No 139
>KOG4410|consensus
Probab=57.25 E-value=18 Score=21.79 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=21.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~ 42 (59)
..-+|++||+.++.-.+|+..+...+.
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~ 356 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKREC 356 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCC
Confidence 346999999999999999887765543
No 140
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=55.12 E-value=25 Score=18.46 Aligned_cols=32 Identities=13% Similarity=0.123 Sum_probs=22.1
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEE
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
-+.++|+|+..+.+.+..++..........++
T Consensus 79 d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~ 110 (169)
T smart00650 79 YKVVGNLPYNISTPILFKLLEEPPAFRDAVLM 110 (169)
T ss_pred CEEEECCCcccHHHHHHHHHhcCCCcceEEEE
Confidence 46689999999888888887654333443333
No 141
>KOG2135|consensus
Probab=54.52 E-value=6.3 Score=25.05 Aligned_cols=29 Identities=28% Similarity=0.235 Sum_probs=21.8
Q ss_pred CCCCCC-cHHHHHHhhccCCCeEEEEEEeC
Q psy10283 23 MLSKQQ-NEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 23 ~L~~~~-~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
-.++.. +.++|...|.+||+|+.|.+-..
T Consensus 379 k~~~glnt~a~ln~hfA~fG~i~n~qv~~~ 408 (526)
T KOG2135|consen 379 KSPFGLNTIADLNPHFAQFGEIENIQVDYS 408 (526)
T ss_pred ccCCCCchHhhhhhhhhhcCccccccccCc
Confidence 345554 55789999999999999876443
No 142
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=50.66 E-value=6 Score=19.18 Aligned_cols=32 Identities=25% Similarity=0.441 Sum_probs=19.2
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccC-CCeEEEEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTV 48 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~~~v 48 (59)
...+|+|++|.......... ...| |+|..+++
T Consensus 93 ~~~l~iGg~~~~~~~~~~~~-~~~f~Gci~~l~v 125 (128)
T PF02210_consen 93 DGSLYIGGLPESNQPSGSVD-TPGFVGCIRDLRV 125 (128)
T ss_dssp EEEEEESSTTTTCTCTTSST-TSB-EEEEEEEEE
T ss_pred CCCEEEecccCccccccccC-CCCcEEEcCeEEE
Confidence 45699999987764432222 3333 77777654
No 143
>KOG2253|consensus
Probab=50.57 E-value=14 Score=24.43 Aligned_cols=34 Identities=26% Similarity=0.434 Sum_probs=29.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEE
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECT 47 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~ 47 (59)
+...++||||+...+..+-++.+...+|.|..++
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~k 71 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWK 71 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhh
Confidence 3567899999999999999999999999887764
No 144
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=49.81 E-value=41 Score=19.03 Aligned_cols=24 Identities=13% Similarity=-0.035 Sum_probs=19.9
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCC
Q psy10283 19 LFVGMLSKQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 19 l~v~~L~~~~~~~~l~~~F~~~G~ 42 (59)
+.++|+|+.++...+..++..+|.
T Consensus 97 ~vvsNlPy~i~~~il~~ll~~~~~ 120 (253)
T TIGR00755 97 KVVSNLPYNISSPLIFKLLEKPKF 120 (253)
T ss_pred eEEEcCChhhHHHHHHHHhccCCC
Confidence 678999999999999998865543
No 145
>COG5584 Predicted small secreted protein [Function unknown]
Probab=48.22 E-value=32 Score=17.31 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=17.5
Q ss_pred HHHHHhhccCCCeEEEEEEeCCC
Q psy10283 31 DDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 31 ~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
.-+++.|+++|.|.--.+...++
T Consensus 37 k~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 37 KVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred HHHHHHhcccCCcceeEEEEecc
Confidence 45678999999998877766554
No 146
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=48.22 E-value=15 Score=17.01 Aligned_cols=18 Identities=17% Similarity=0.453 Sum_probs=14.3
Q ss_pred CCCeEEEcCCCCCCcHHH
Q psy10283 15 PDKKLFVGMLSKQQNEDD 32 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~ 32 (59)
..+.+|+|.+|...-.+.
T Consensus 26 tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred cCceEEECCCChHHHHcC
Confidence 578999999998875554
No 147
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=48.08 E-value=33 Score=16.67 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=18.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFG 41 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G 41 (59)
..-+|||+++..+.+.--..+-+..+
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~ 50 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIG 50 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCC
Confidence 44699999999988775555555443
No 148
>PF07230 Peptidase_S80: Bacteriophage T4-like capsid assembly protein (Gp20); InterPro: IPR010823 This family of proteins is essential for capsid assembly in the T4-like bacteriophages []. Gp20 forms a unique 12 subunit portal vertex through which DNA enters during packaging and exits during infection. The Gp20 vertex acts as an initiator for the assembly of the major capsid protein and the scaffolding proteins into a prolate icosahedron of precise dimensions. The regulation of portal protein gene expression is an important regulator of prohead assembly in bacteriophage T4 [].
Probab=47.44 E-value=27 Score=22.44 Aligned_cols=29 Identities=28% Similarity=0.457 Sum_probs=22.2
Q ss_pred EcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 21 VGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 21 v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
|||||..--++-|+++...|-. +++.|..
T Consensus 283 vGnlpk~KAeqyl~~iM~k~kn----klvYDa~ 311 (501)
T PF07230_consen 283 VGNLPKQKAEQYLRDIMNKYKN----KLVYDAS 311 (501)
T ss_pred CCCCChHhHHHHHHHHHHHhcc----eeeecCC
Confidence 6999999999999998887744 4455544
No 149
>PHA02531 20 portal vertex protein; Provisional
Probab=42.66 E-value=23 Score=22.73 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=24.1
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCC
Q psy10283 19 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 56 (59)
Q Consensus 19 l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~ 56 (59)
|-|||||..--++-|+++..+|-. +++.|.. |.-
T Consensus 284 iDVGNlPk~KAeqYlr~vm~~ykN----klvYDa~TGei 318 (514)
T PHA02531 284 IDVGNLPKRKAEEYLNNVMQRYKN----RVVYDANTGKV 318 (514)
T ss_pred EEcCCCChhhHHHHHHHHHHHhhh----hEEEeCCCCee
Confidence 446999999999999998887744 4444444 443
No 150
>PHA01632 hypothetical protein
Probab=42.38 E-value=27 Score=15.75 Aligned_cols=18 Identities=17% Similarity=0.573 Sum_probs=14.7
Q ss_pred EcCCCCCCcHHHHHHhhc
Q psy10283 21 VGMLSKQQNEDDVRKIFA 38 (59)
Q Consensus 21 v~~L~~~~~~~~l~~~F~ 38 (59)
|-.+|..-++++|+.++.
T Consensus 21 ieqvp~kpteeelrkvlp 38 (64)
T PHA01632 21 IEQVPQKPTEEELRKVLP 38 (64)
T ss_pred hhhcCCCCCHHHHHHHHH
Confidence 467899999999988654
No 151
>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.
Probab=41.82 E-value=25 Score=17.59 Aligned_cols=32 Identities=28% Similarity=0.379 Sum_probs=18.5
Q ss_pred CCCeEEEcCCCCCCcH--HHHHHhhccCCCeEEEEE
Q psy10283 15 PDKKLFVGMLSKQQNE--DDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~--~~l~~~F~~~G~i~~~~v 48 (59)
....+|+|++|..... .....-| -|+|.++++
T Consensus 117 ~~~~~~iGg~~~~~~~~~~~~~~~F--~Gci~~v~i 150 (151)
T cd00110 117 LDGPLYLGGLPEDLKSPGLPVSPGF--VGCIRDLKV 150 (151)
T ss_pred CCCCeEEcCCCCchhcccccccCCC--ceEeeEeEe
Confidence 4567999999875432 1111222 277877764
No 152
>COG3189 Uncharacterized conserved protein [Function unknown]
Probab=41.17 E-value=54 Score=16.98 Aligned_cols=33 Identities=9% Similarity=0.259 Sum_probs=21.7
Q ss_pred CcceeecccCCCCCCCCeEEEcCC-CCCCcHHHH
Q psy10283 1 MLPLDLIWNCTPLPPDKKLFVGML-SKQQNEDDV 33 (59)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~l~v~~L-~~~~~~~~l 33 (59)
||.++--+....+..+.+|.|-.| |..++.+++
T Consensus 3 ~i~ikRvye~~~~dDG~RVLVdRlWPRGi~Ke~~ 36 (117)
T COG3189 3 TIRIKRVYEPAEPDDGYRVLVDRLWPRGIKKEDL 36 (117)
T ss_pred eeEEEeecCCCCCCCCeEEEEeecCCCCCChhhh
Confidence 345555566666778889998776 455666543
No 153
>PF12631 GTPase_Cys_C: Catalytic cysteine-containing C-terminus of GTPase, MnmE; PDB: 1XZQ_A 1XZP_A 2GJ8_D 3GEH_A 3GEI_B 3GEE_A.
Probab=41.13 E-value=28 Score=15.98 Aligned_cols=14 Identities=36% Similarity=0.536 Sum_probs=9.5
Q ss_pred CCcHHHHHHhhccC
Q psy10283 27 QQNEDDVRKIFAPF 40 (59)
Q Consensus 27 ~~~~~~l~~~F~~~ 40 (59)
..+++-|..+|++|
T Consensus 59 ~~~ediLd~IFs~F 72 (73)
T PF12631_consen 59 VVTEDILDNIFSNF 72 (73)
T ss_dssp S--HHHHHHHHCTS
T ss_pred CChHHHHHHHHHhh
Confidence 45667788899887
No 154
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=40.07 E-value=50 Score=18.83 Aligned_cols=26 Identities=12% Similarity=-0.012 Sum_probs=20.1
Q ss_pred cCCCCCCcHHHHHHhhccCCCeEEEE
Q psy10283 22 GMLSKQQNEDDVRKIFAPFGTIEECT 47 (59)
Q Consensus 22 ~~L~~~~~~~~l~~~F~~~G~i~~~~ 47 (59)
++=|+.+++++++.+|+..-.|..+.
T Consensus 171 ~GPPf~v~~~e~~~lf~~~~~i~~l~ 196 (226)
T PRK13256 171 QTPPYSVTQAELIKNFSAKIKFELID 196 (226)
T ss_pred CCCCCcCCHHHHHHhccCCceEEEee
Confidence 34578899999999998866666654
No 155
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=39.85 E-value=33 Score=14.24 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=18.0
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~ 42 (59)
..+|+.+.......+.+.++...+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 35666665546677888888887764
No 156
>PF08366 LLGL: LLGL2; InterPro: IPR013577 This domain is found in lethal giant larvae homologue 2 (LLGL2) proteins and syntaxin-binding proteins like tomosyn []. It has been identified in eukaryotes and tends to be found together with WD repeats (IPR001680 from INTERPRO).
Probab=39.81 E-value=32 Score=17.35 Aligned_cols=24 Identities=13% Similarity=0.380 Sum_probs=17.8
Q ss_pred eecccCCCCCCCCeEEEcCCCCCC
Q psy10283 5 DLIWNCTPLPPDKKLFVGMLSKQQ 28 (59)
Q Consensus 5 ~~~~~~~~~~~~~~l~v~~L~~~~ 28 (59)
|+.|........--+|.|++|+.-
T Consensus 18 Ki~w~~~~~~~~~iiFsGGmp~~~ 41 (105)
T PF08366_consen 18 KILWRTSRNGEPFIIFSGGMPRAS 41 (105)
T ss_pred EEEEEecCCCCcEEEEeCCccccc
Confidence 466777665667789999998764
No 157
>KOG2068|consensus
Probab=38.39 E-value=25 Score=21.34 Aligned_cols=36 Identities=19% Similarity=0.362 Sum_probs=26.2
Q ss_pred CeEEEcCCCCCCcHH-HHH--HhhccCCCeEEEEEEeCC
Q psy10283 17 KKLFVGMLSKQQNED-DVR--KIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~-~l~--~~F~~~G~i~~~~v~~d~ 52 (59)
..+|+-+|+.....+ .|+ +.|.+||.|.++.+-.+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~ 116 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDP 116 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCc
Confidence 457888888777544 444 478899999998777665
No 158
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=34.52 E-value=22 Score=17.93 Aligned_cols=20 Identities=15% Similarity=0.489 Sum_probs=14.8
Q ss_pred cCCCCCCcHHHHHHhhccCC
Q psy10283 22 GMLSKQQNEDDVRKIFAPFG 41 (59)
Q Consensus 22 ~~L~~~~~~~~l~~~F~~~G 41 (59)
|.|...++++.|..+++...
T Consensus 75 G~l~~kI~d~~L~~iL~~i~ 94 (107)
T PF01984_consen 75 GQLRGKIDDEQLKEILEQIS 94 (107)
T ss_dssp TSSSS-B-HHHHHHHHHHHC
T ss_pred CCCCCCcCHHHHHHHHHHHh
Confidence 67888999999999987653
No 159
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=34.34 E-value=50 Score=21.11 Aligned_cols=42 Identities=26% Similarity=0.452 Sum_probs=29.2
Q ss_pred CCCeEEEcCCCCC-CcHHHHHHhhccC----CCeEEEEEEeCCCCCC
Q psy10283 15 PDKKLFVGMLSKQ-QNEDDVRKIFAPF----GTIEECTVLKGPDGTS 56 (59)
Q Consensus 15 ~~~~l~v~~L~~~-~~~~~l~~~F~~~----G~i~~~~v~~d~~g~~ 56 (59)
...+|-|-|+.+. +...+|..+|+.| |.+..+.|....-|+.
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGke 191 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKE 191 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHH
Confidence 4678889999876 4667888888766 6788777654322443
No 160
>smart00457 MACPF membrane-attack complex / perforin.
Probab=33.79 E-value=22 Score=19.32 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.7
Q ss_pred cCCCCCCcHHHHHHhhccCCC
Q psy10283 22 GMLSKQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 22 ~~L~~~~~~~~l~~~F~~~G~ 42 (59)
.+||...+...+..+|..||+
T Consensus 31 ~~Lp~~~~~~~~~~fi~~yGT 51 (194)
T smart00457 31 RDLPDQYNRGAYARFIDKYGT 51 (194)
T ss_pred HhCccccCHHHHHHHHHHhCC
Confidence 468888888888999999996
No 161
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=33.15 E-value=27 Score=17.85 Aligned_cols=32 Identities=16% Similarity=0.006 Sum_probs=24.8
Q ss_pred eEEEcCCCCCC-cHHHHHHhhccCCCeEEEEEE
Q psy10283 18 KLFVGMLSKQQ-NEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 18 ~l~v~~L~~~~-~~~~l~~~F~~~G~i~~~~v~ 49 (59)
.+-+.+||... +++.++.+-+.+|++.++...
T Consensus 106 WVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 106 WVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 35567999885 667788999999999987643
No 162
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=32.48 E-value=52 Score=18.49 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=16.7
Q ss_pred CCCCCCcHHHHHHhhccCCCeEEEEE
Q psy10283 23 MLSKQQNEDDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 23 ~L~~~~~~~~l~~~F~~~G~i~~~~v 48 (59)
+=|+.+++++++++|+..-.|..+..
T Consensus 165 GPPf~v~~~ev~~l~~~~f~i~~l~~ 190 (218)
T PF05724_consen 165 GPPFSVTEEEVRELFGPGFEIEELEE 190 (218)
T ss_dssp SSS----HHHHHHHHTTTEEEEEEEE
T ss_pred CcCCCCCHHHHHHHhcCCcEEEEEec
Confidence 45888999999999996656666654
No 163
>KOG3432|consensus
Probab=32.28 E-value=47 Score=17.12 Aligned_cols=31 Identities=10% Similarity=0.437 Sum_probs=21.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v 48 (59)
..+++| +...++.+++++.|..|-.-.++-+
T Consensus 35 ~~Nf~v--v~~~Tt~~eiedaF~~f~~RdDIaI 65 (121)
T KOG3432|consen 35 EPNFLV--VDSKTTVEEIEDAFKSFTARDDIAI 65 (121)
T ss_pred CCCEEE--EeccCCHHHHHHHHHhhccccCeEE
Confidence 334554 3457899999999999876555544
No 164
>PF03672 UPF0154: Uncharacterised protein family (UPF0154); InterPro: IPR005359 The proteins in this entry are functionally uncharacterised.
Probab=32.07 E-value=43 Score=15.44 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=14.1
Q ss_pred CCCcHHHHHHhhccCCC
Q psy10283 26 KQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 26 ~~~~~~~l~~~F~~~G~ 42 (59)
+.++++.++..|.+.|.
T Consensus 30 Ppine~mir~M~~QMG~ 46 (64)
T PF03672_consen 30 PPINEKMIRAMMMQMGR 46 (64)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 45789999999998885
No 165
>PRK00523 hypothetical protein; Provisional
Probab=31.15 E-value=45 Score=15.77 Aligned_cols=17 Identities=18% Similarity=0.446 Sum_probs=14.2
Q ss_pred CCCcHHHHHHhhccCCC
Q psy10283 26 KQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 26 ~~~~~~~l~~~F~~~G~ 42 (59)
+.++|+.++..|.+.|.
T Consensus 38 Ppine~mir~M~~QMGq 54 (72)
T PRK00523 38 PPITENMIRAMYMQMGR 54 (72)
T ss_pred cCCCHHHHHHHHHHhCC
Confidence 45789999999998885
No 166
>KOG1888|consensus
Probab=30.86 E-value=1.4e+02 Score=20.73 Aligned_cols=38 Identities=8% Similarity=0.174 Sum_probs=27.3
Q ss_pred CCeEEEcCCCC--CCcHHHHHHhhccCC-CeEEEEEEeCCC
Q psy10283 16 DKKLFVGMLSK--QQNEDDVRKIFAPFG-TIEECTVLKGPD 53 (59)
Q Consensus 16 ~~~l~v~~L~~--~~~~~~l~~~F~~~G-~i~~~~v~~d~~ 53 (59)
..-+++.+.++ .++...++.+|..|| +|.-+.+++..+
T Consensus 309 KP~I~l~~~DP~y~~a~lHF~~L~~RYG~PIiilNLIKt~e 349 (868)
T KOG1888|consen 309 KPDIVLDKRDPFYETAALHFDNLVQRYGNPIIILNLIKTNE 349 (868)
T ss_pred CCCeEEeccCCccchHHHHHHHHHHhcCCcEEEEEeecccc
Confidence 44577766654 556678899999998 566677777765
No 167
>COG3194 DAL3 Ureidoglycolate hydrolase [Nucleotide transport and metabolism]
Probab=30.13 E-value=26 Score=19.21 Aligned_cols=12 Identities=50% Similarity=1.046 Sum_probs=10.3
Q ss_pred HHhhccCCCeEE
Q psy10283 34 RKIFAPFGTIEE 45 (59)
Q Consensus 34 ~~~F~~~G~i~~ 45 (59)
++.|++||.|.+
T Consensus 11 ~EaFapfGdVIe 22 (168)
T COG3194 11 KEAFAPFGDVIE 22 (168)
T ss_pred hhhhcccccccc
Confidence 468999999887
No 168
>smart00282 LamG Laminin G domain.
Probab=29.84 E-value=31 Score=17.13 Aligned_cols=32 Identities=25% Similarity=0.346 Sum_probs=18.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccC-CCeEEEEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTV 48 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~~~v 48 (59)
...+|+|++|...... .......| |+|.++.+
T Consensus 100 ~~~l~iGG~p~~~~~~-~~~~~~~F~GCi~~v~i 132 (135)
T smart00282 100 DGPLYLGGLPEDLKLP-PLLVTPGFRGCIRNLKV 132 (135)
T ss_pred CCCcEEccCCchhccc-ccccCCCCeeEeeEEEE
Confidence 3568999998764321 11122333 77877765
No 169
>PF14893 PNMA: PNMA
Probab=29.20 E-value=50 Score=20.07 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=19.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhc
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFA 38 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~ 38 (59)
..+.+.|.++|.+++++++++...
T Consensus 17 ~~r~lLv~giP~dc~~~ei~e~l~ 40 (331)
T PF14893_consen 17 PQRALLVLGIPEDCEEAEIEEALQ 40 (331)
T ss_pred hhhhheeecCCCCCCHHHHHHHHH
Confidence 456788999999999998877543
No 170
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=28.88 E-value=86 Score=15.66 Aligned_cols=26 Identities=15% Similarity=0.146 Sum_probs=16.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFG 41 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G 41 (59)
..-+|||+++..+.+.--..+-+.++
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~ 52 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAE 52 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCC
Confidence 34699999988887664444444443
No 171
>PRK04239 hypothetical protein; Provisional
Probab=28.81 E-value=52 Score=16.81 Aligned_cols=19 Identities=11% Similarity=0.469 Sum_probs=16.4
Q ss_pred cCCCCCCcHHHHHHhhccC
Q psy10283 22 GMLSKQQNEDDVRKIFAPF 40 (59)
Q Consensus 22 ~~L~~~~~~~~l~~~F~~~ 40 (59)
|.|+..+++++|..+.+..
T Consensus 80 G~i~~ki~e~~L~~lL~~v 98 (110)
T PRK04239 80 GRIQGPIDDEQLKEILEQL 98 (110)
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788999999999998764
No 172
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=28.57 E-value=89 Score=16.80 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=14.1
Q ss_pred HHHHhhccCCCeEEEEEEeC
Q psy10283 32 DVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 32 ~l~~~F~~~G~i~~~~v~~d 51 (59)
.|-+.|..||.+.-+++.-+
T Consensus 52 ~ll~~~~~~GevvLvRfv~~ 71 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD 71 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT
T ss_pred HHHHHHHhCCceEEEEEeCC
Confidence 56678889999888776543
No 173
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=28.07 E-value=52 Score=16.47 Aligned_cols=18 Identities=28% Similarity=0.401 Sum_probs=12.7
Q ss_pred eEEEcCCCCCCcHHHHHH
Q psy10283 18 KLFVGMLSKQQNEDDVRK 35 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~ 35 (59)
.||+|+.|...+.+.+++
T Consensus 7 ~l~~G~~~~~~~~~~l~~ 24 (138)
T smart00195 7 HLYLGSYSSALNLALLKK 24 (138)
T ss_pred CeEECChhHcCCHHHHHH
Confidence 599999987765554443
No 174
>PF07683 CobW_C: Cobalamin synthesis protein cobW C-terminal domain; InterPro: IPR011629 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents the C-terminal domain found in CobW, as well as in P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [].; PDB: 1NIJ_A.
Probab=27.71 E-value=73 Score=14.78 Aligned_cols=23 Identities=13% Similarity=0.443 Sum_probs=13.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPF 40 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~ 40 (59)
..+=++||. ..+.+.|++.|..+
T Consensus 71 ~~~lV~IG~---~ld~~~l~~~l~~c 93 (94)
T PF07683_consen 71 DSRLVFIGK---NLDKEALREALDAC 93 (94)
T ss_dssp -EEEEEEEE---S--HHHHHHHHHT-
T ss_pred CeEEEEEEC---CCCHHHHHHHHHcc
Confidence 445578875 66788888888654
No 175
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=27.34 E-value=1.3e+02 Score=17.16 Aligned_cols=21 Identities=19% Similarity=0.074 Sum_probs=16.5
Q ss_pred eEEEcCCCCCCcHHHHHHhhc
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFA 38 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~ 38 (59)
.+.|+|+|+.++...+..++.
T Consensus 93 d~Vv~NlPy~i~s~~~~~l~~ 113 (258)
T PRK14896 93 NKVVSNLPYQISSPITFKLLK 113 (258)
T ss_pred eEEEEcCCcccCcHHHHHHHh
Confidence 467899999998777776664
No 176
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=27.32 E-value=75 Score=14.46 Aligned_cols=35 Identities=9% Similarity=0.207 Sum_probs=22.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccC---CCeEEEEEEeC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPF---GTIEECTVLKG 51 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~---G~i~~~~v~~d 51 (59)
..+|++.++.. .+.++++..|..| .....+.++-|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdD 42 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDD 42 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecC
Confidence 35789988865 5556788888777 12345555544
No 177
>PRK01844 hypothetical protein; Provisional
Probab=27.20 E-value=58 Score=15.40 Aligned_cols=17 Identities=18% Similarity=0.337 Sum_probs=14.0
Q ss_pred CCCcHHHHHHhhccCCC
Q psy10283 26 KQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 26 ~~~~~~~l~~~F~~~G~ 42 (59)
+.++|+.++..|.+.|.
T Consensus 37 Ppine~mir~Mm~QMGq 53 (72)
T PRK01844 37 PPINEQMLKMMMMQMGQ 53 (72)
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 45788999999998885
No 178
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=26.87 E-value=61 Score=19.75 Aligned_cols=33 Identities=15% Similarity=0.399 Sum_probs=22.1
Q ss_pred eEEEc----CCCCCCcH--HHHHHhhccCCCeEEEEEEe
Q psy10283 18 KLFVG----MLSKQQNE--DDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 18 ~l~v~----~L~~~~~~--~~l~~~F~~~G~i~~~~v~~ 50 (59)
-+|++ ++|.-.++ +.|++.|+.||.-.+++...
T Consensus 276 ~iylSGrf~~~~~~~~dv~~~l~d~~s~~g~~~evr~le 314 (374)
T COG2441 276 AIYLSGRFSRIPRFFSDVKEKLRDAFSSYGFGIEVRKLE 314 (374)
T ss_pred eEEEeeecccccchhhHHHHHHHHHHhhcCccceeehhh
Confidence 36664 34444444 57999999999877776543
No 179
>PF13600 DUF4140: N-terminal domain of unknown function (DUF4140)
Probab=26.80 E-value=44 Score=16.21 Aligned_cols=36 Identities=14% Similarity=0.039 Sum_probs=23.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEe
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
....|.+.+||..+..+.|+---..-..|.++.+-.
T Consensus 22 G~~~i~~~~Lp~~~d~~Sl~V~~~g~~~i~~v~~~~ 57 (104)
T PF13600_consen 22 GENEIIFEGLPPSLDPDSLRVSGEGGVTILSVRFRR 57 (104)
T ss_pred CceEEEEeCCCcccCCCcEEEEecCCEEEEEEEEEE
Confidence 456899999999998877653222114666666544
No 180
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=26.55 E-value=53 Score=12.52 Aligned_cols=10 Identities=30% Similarity=0.328 Sum_probs=6.7
Q ss_pred CCCeEEEcCC
Q psy10283 15 PDKKLFVGML 24 (59)
Q Consensus 15 ~~~~l~v~~L 24 (59)
..++|||.|-
T Consensus 2 d~~~lyv~~~ 11 (42)
T TIGR02276 2 DGTKLYVTNS 11 (42)
T ss_pred CCCEEEEEeC
Confidence 3567888764
No 181
>PF06317 Arena_RNA_pol: Arenavirus RNA polymerase; InterPro: IPR010453 This family consists of several Arenavirus RNA polymerase proteins (2.7.7.48 from EC) [].; GO: 0003968 RNA-directed RNA polymerase activity, 0019079 viral genome replication; PDB: 3JSB_A.
Probab=26.35 E-value=22 Score=26.76 Aligned_cols=29 Identities=14% Similarity=0.347 Sum_probs=0.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFG 41 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G 41 (59)
.+.++.+|||.|.......-+++.|+.+.
T Consensus 1121 VGgNRELYiGDLnTKm~TRLIEDyfEs~t 1149 (2207)
T PF06317_consen 1121 VGGNRELYIGDLNTKMFTRLIEDYFESLT 1149 (2207)
T ss_dssp -----------------------------
T ss_pred cCCcceEeechhhHHHHHHHHHHHHHHHH
Confidence 35788999999999888888888887654
No 182
>PF08368 FAST_2: FAST kinase-like protein, subdomain 2; InterPro: IPR013579 This domain represents a conserved region of eukaryotic Fas-activated serine/threonine (FAST) kinases (2.7.1 from EC) that contains several conserved leucine residues. FAST kinase is rapidly activated during Fas-mediated apoptosis, when it phosphorylates TIA-1, a nuclear RNA-binding protein that has been implicated as an effector of apoptosis []. Note that many family members are hypothetical proteins. This subdomain is often found associated with the FAST kinase-like protein, subdomain 2.
Probab=26.21 E-value=89 Score=14.96 Aligned_cols=18 Identities=17% Similarity=0.514 Sum_probs=14.1
Q ss_pred ccCCCeEEEEEEeCCCCC
Q psy10283 38 APFGTIEECTVLKGPDGT 55 (59)
Q Consensus 38 ~~~G~i~~~~v~~d~~g~ 55 (59)
.+||...++.+..|.+|+
T Consensus 73 tp~gy~iD~E~~lD~~~~ 90 (93)
T PF08368_consen 73 TPYGYTIDFEIVLDKNGK 90 (93)
T ss_pred cCCCceEEEEEEECCCCC
Confidence 357888889999998754
No 183
>KOG0821|consensus
Probab=25.44 E-value=58 Score=19.21 Aligned_cols=18 Identities=17% Similarity=0.159 Sum_probs=12.8
Q ss_pred EEcCCCCCCcHHHHHHhh
Q psy10283 20 FVGMLSKQQNEDDVRKIF 37 (59)
Q Consensus 20 ~v~~L~~~~~~~~l~~~F 37 (59)
.|||||+++...-+-+.+
T Consensus 133 ~IGNLPf~i~~pliik~l 150 (326)
T KOG0821|consen 133 IIGNLPFSVSTPLIIKWL 150 (326)
T ss_pred EeccCCccccchHHHHHH
Confidence 469999998776544443
No 184
>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein. GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation.
Probab=25.02 E-value=81 Score=15.98 Aligned_cols=25 Identities=12% Similarity=0.163 Sum_probs=15.9
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~ 42 (59)
--+||+|. -...+..+.++++.|+.
T Consensus 72 lfl~Vn~~-~p~~~~~~~~lY~~~kd 96 (112)
T cd01611 72 LFLFVNNS-LPPTSATMSQLYEEHKD 96 (112)
T ss_pred EEEEECCc-cCCchhHHHHHHHHhCC
Confidence 34778883 22345667888887764
No 185
>COG2118 DNA-binding protein [General function prediction only]
Probab=24.01 E-value=81 Score=16.32 Aligned_cols=20 Identities=15% Similarity=0.541 Sum_probs=16.8
Q ss_pred EcCCCCCCcHHHHHHhhccC
Q psy10283 21 VGMLSKQQNEDDVRKIFAPF 40 (59)
Q Consensus 21 v~~L~~~~~~~~l~~~F~~~ 40 (59)
.|++...+++++|.+++...
T Consensus 82 tGri~~~I~e~~lk~IL~~i 101 (116)
T COG2118 82 TGRITHKIDEEELKEILERI 101 (116)
T ss_pred cCCCCCCCCHHHHHHHHHHH
Confidence 37889999999999988754
No 186
>KOG2591|consensus
Probab=23.79 E-value=2.4e+02 Score=19.00 Aligned_cols=37 Identities=8% Similarity=0.184 Sum_probs=28.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhc--cCCCeEEEEEEeC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFA--PFGTIEECTVLKG 51 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~--~~G~i~~~~v~~d 51 (59)
..|-+.+.-+|..+..+.++.+|. .+-++.+|....+
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N 212 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN 212 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec
Confidence 344566789999999999999996 4778888876543
No 187
>PF14404 Strep_pep: Ribosomally synthesized peptide in Streptomyces species
Probab=23.47 E-value=40 Score=15.30 Aligned_cols=14 Identities=21% Similarity=0.285 Sum_probs=11.2
Q ss_pred CcceeecccCCCCC
Q psy10283 1 MLPLDLIWNCTPLP 14 (59)
Q Consensus 1 ~~~~~~~~~~~~~~ 14 (59)
|.|+.+|++.+...
T Consensus 1 MqpFalnyArpa~~ 14 (63)
T PF14404_consen 1 MQPFALNYARPAEE 14 (63)
T ss_pred CCchhhhccccccc
Confidence 78999999988544
No 188
>KOG4483|consensus
Probab=22.94 E-value=93 Score=19.87 Aligned_cols=36 Identities=11% Similarity=0.111 Sum_probs=27.7
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCC-CeEEEEEEeCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFG-TIEECTVLKGP 52 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G-~i~~~~v~~d~ 52 (59)
+-|-|.+.|.....++|...|+.|+ .-.+++++-|.
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt 428 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT 428 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc
Confidence 4577889999998899999999985 45566666554
No 189
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=22.60 E-value=90 Score=13.77 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=17.3
Q ss_pred CcHHHHHHhhccCCCeEEEEEEe
Q psy10283 28 QNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 28 ~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
++.+++.+.+...|--.++.|+.
T Consensus 30 ~~~~~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 30 LDWEDVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred CCHHHHHHHHHHcCCCcceeeec
Confidence 44577788888888888887764
No 190
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=22.35 E-value=50 Score=19.65 Aligned_cols=19 Identities=21% Similarity=0.485 Sum_probs=15.5
Q ss_pred CCcHHHHHHhhccCCCeEE
Q psy10283 27 QQNEDDVRKIFAPFGTIEE 45 (59)
Q Consensus 27 ~~~~~~l~~~F~~~G~i~~ 45 (59)
..++++|..+|..||+...
T Consensus 138 ~~~~~~L~~i~~~yGee~~ 156 (296)
T PRK00050 138 TYSEEELARIFKEYGEERF 156 (296)
T ss_pred hCCHHHHHHHHHHhcCcch
Confidence 3578899999999998654
No 191
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=22.10 E-value=52 Score=19.71 Aligned_cols=19 Identities=21% Similarity=0.462 Sum_probs=15.6
Q ss_pred CCcHHHHHHhhccCCCeEE
Q psy10283 27 QQNEDDVRKIFAPFGTIEE 45 (59)
Q Consensus 27 ~~~~~~l~~~F~~~G~i~~ 45 (59)
..++++|..+|..||+...
T Consensus 140 ~~~e~~L~~i~~~yGEe~~ 158 (305)
T TIGR00006 140 TYSEEDLERILKKYGEEKF 158 (305)
T ss_pred hCCHHHHHHHHHHhcCcch
Confidence 3688899999999998654
No 192
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=21.94 E-value=76 Score=15.70 Aligned_cols=19 Identities=11% Similarity=0.370 Sum_probs=13.3
Q ss_pred CCeEEEcCCCCCCcHHHHH
Q psy10283 16 DKKLFVGMLSKQQNEDDVR 34 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~ 34 (59)
...||+|+.+...+.+.|.
T Consensus 6 ~~~l~~g~~~~~~d~~~L~ 24 (139)
T cd00127 6 TPGLYLGSYPAASDKELLK 24 (139)
T ss_pred cCCeEECChhHhcCHHHHH
Confidence 3578999988766555554
No 193
>PF08756 YfkB: YfkB-like domain; InterPro: IPR014866 YfkB is adjacent to YfkA in Bacillus subtilis. In other bacterial species, it is fused to this protein. As YfkA contains a Radical SAM domain it suggests this domain is interacts with them.
Probab=21.21 E-value=80 Score=17.05 Aligned_cols=41 Identities=24% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCeEEEcCCCCCC---cHHHHHHhhccCCCeEEEEEEeCCCCCCC
Q psy10283 16 DKKLFVGMLSKQQ---NEDDVRKIFAPFGTIEECTVLKGPDGTSK 57 (59)
Q Consensus 16 ~~~l~v~~L~~~~---~~~~l~~~F~~~G~i~~~~v~~d~~g~~r 57 (59)
......|-||+.- .++++ +++...-.-..+.+--|++|++|
T Consensus 32 ~~WMLFGTLPfy~Cs~~eeD~-~Ll~RL~~~~NVTvRNDPDGRsR 75 (153)
T PF08756_consen 32 NVWMLFGTLPFYPCSDDEEDL-ALLKRLRSEPNVTVRNDPDGRSR 75 (153)
T ss_pred CeeEEecccccccCCCCHHHH-HHHHHHHhCCCCeeecCCCccce
Confidence 3345568888653 44442 33333333344556667777775
No 194
>COG5594 Uncharacterized integral membrane protein [Function unknown]
Probab=21.13 E-value=94 Score=21.47 Aligned_cols=28 Identities=7% Similarity=0.437 Sum_probs=22.8
Q ss_pred CCCeEEEcCCCCCC-cHHHHHHhhccCCC
Q psy10283 15 PDKKLFVGMLSKQQ-NEDDVRKIFAPFGT 42 (59)
Q Consensus 15 ~~~~l~v~~L~~~~-~~~~l~~~F~~~G~ 42 (59)
.++++++..||.++ ++++|.++|.+.+.
T Consensus 207 ssRTvlis~LP~~~~~~e~L~~~~~kl~~ 235 (827)
T COG5594 207 SSRTVLISGLPSELRSDEELKELFDKLKV 235 (827)
T ss_pred CCceEEeecCChhhcCchhHHHHHhhcCe
Confidence 57899999999887 55679999987643
No 195
>COG0130 TruB Pseudouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=21.10 E-value=1.6e+02 Score=17.48 Aligned_cols=30 Identities=33% Similarity=0.568 Sum_probs=19.8
Q ss_pred CCeEEEc--CCCCCC-cHHHHHHhhccC-CCeEE
Q psy10283 16 DKKLFVG--MLSKQQ-NEDDVRKIFAPF-GTIEE 45 (59)
Q Consensus 16 ~~~l~v~--~L~~~~-~~~~l~~~F~~~-G~i~~ 45 (59)
..+.|+. .+-..+ ++++++..+..| |.|..
T Consensus 75 ~~K~Y~a~~~lG~~t~~~e~i~~~l~~F~G~I~Q 108 (271)
T COG0130 75 ADKEYVATVRLGDQTDSEEEVRAALEAFTGEIYQ 108 (271)
T ss_pred CCcEEEEEEEeCCcCCCHHHHHHHHHhcceeeEe
Confidence 3345544 344555 788999988887 77764
No 196
>PF15628 RRM_DME: RRM in Demeter
Probab=21.05 E-value=1.1e+02 Score=15.43 Aligned_cols=25 Identities=12% Similarity=0.474 Sum_probs=18.0
Q ss_pred CCCeEEEcC----CCCCCcHHHHHHhhcc
Q psy10283 15 PDKKLFVGM----LSKQQNEDDVRKIFAP 39 (59)
Q Consensus 15 ~~~~l~v~~----L~~~~~~~~l~~~F~~ 39 (59)
..+.+|.|. +-...+.+++++.|..
T Consensus 49 ~rr~vYfGtsv~SIfrGls~~eIq~cF~~ 77 (103)
T PF15628_consen 49 PRRIVYFGTSVSSIFRGLSREEIQQCFWK 77 (103)
T ss_pred CceEEEecCcHHHHhcccCHHHHHHHHhc
Confidence 356788764 4566788888988875
No 197
>PF12464 Mac: Maltose acetyltransferase ; InterPro: IPR024688 Maltose acetyltransferase uses acetyl-CoA as acetyl donor to acetylate cytoplasmic maltose [], while galactoside acetyltransferase act on galactosides. ; GO: 0016407 acetyltransferase activity; PDB: 3V4E_A 4EGG_E 4DCL_A 3FTT_A 1KRR_B 1KRU_A 1KRV_C 1KQA_A 3NZ2_J 3ECT_A ....
Probab=20.85 E-value=68 Score=13.51 Aligned_cols=11 Identities=18% Similarity=0.661 Sum_probs=6.5
Q ss_pred HHHHHhhccCC
Q psy10283 31 DDVRKIFAPFG 41 (59)
Q Consensus 31 ~~l~~~F~~~G 41 (59)
+-|+++|..+|
T Consensus 44 ~llk~l~g~~G 54 (55)
T PF12464_consen 44 ELLKELFGSVG 54 (55)
T ss_dssp HHHHHHSSBES
T ss_pred HHHHHHhhhcC
Confidence 34666666655
No 198
>KOG0820|consensus
Probab=20.74 E-value=1.3e+02 Score=18.27 Aligned_cols=21 Identities=24% Similarity=0.056 Sum_probs=16.7
Q ss_pred eEEEcCCCCCCcHHHHHHhhc
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFA 38 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~ 38 (59)
-+.|.|||+.++..-+..+..
T Consensus 125 d~cVsNlPyqISSp~vfKLL~ 145 (315)
T KOG0820|consen 125 DGCVSNLPYQISSPLVFKLLL 145 (315)
T ss_pred ceeeccCCccccCHHHHHhcC
Confidence 477999999999887766654
No 199
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=20.65 E-value=22 Score=19.25 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=17.8
Q ss_pred cCCCCCCcHHHHHHhhcc-CCCeEEEEEEeCCC-CCCCC
Q psy10283 22 GMLSKQQNEDDVRKIFAP-FGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 22 ~~L~~~~~~~~l~~~F~~-~G~i~~~~v~~d~~-g~~rG 58 (59)
--||++++-.+|.++-.. ++.-..+++..... |+.|+
T Consensus 117 l~LPRn~dl~ql~~~~~~l~~~~~~~~v~~~~~n~~~k~ 155 (163)
T PF09445_consen 117 LFLPRNSDLNQLSQLTRELFGPSKKCEVEQNYLNGKLKA 155 (163)
T ss_dssp EEEETTB-HHHHHHT----T-TTEEEEEEEEEETTEEEE
T ss_pred EEeCCCCCHHHHHHHhccccCCCCeEEEEEehcCCeeEE
Confidence 347888888888776422 34444444433222 44443
No 200
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=20.56 E-value=71 Score=17.11 Aligned_cols=23 Identities=26% Similarity=0.512 Sum_probs=14.9
Q ss_pred EcCCCCCCcHHH---HHHhhccCCCe
Q psy10283 21 VGMLSKQQNEDD---VRKIFAPFGTI 43 (59)
Q Consensus 21 v~~L~~~~~~~~---l~~~F~~~G~i 43 (59)
+..||...+... +.++|..||.-
T Consensus 53 l~~L~~~~~~~~~~~y~~f~~~yGTH 78 (212)
T PF01823_consen 53 LNALPAEYNSDNTDEYYRFFDKYGTH 78 (212)
T ss_dssp HHTSHSS--HHHHHHHHHHHHHH-SE
T ss_pred HHhhCcccCccchHHHHHHHHHhCcE
Confidence 456777777766 77899999973
No 201
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=20.49 E-value=87 Score=12.79 Aligned_cols=17 Identities=6% Similarity=0.391 Sum_probs=12.1
Q ss_pred CCCCCCcHHHHHHhhcc
Q psy10283 23 MLSKQQNEDDVRKIFAP 39 (59)
Q Consensus 23 ~L~~~~~~~~l~~~F~~ 39 (59)
+++...+.++++..|..
T Consensus 7 gl~~~~~~~~ik~~y~~ 23 (55)
T cd06257 7 GVPPDASDEEIKKAYRK 23 (55)
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 56777788888776653
No 202
>PF14112 DUF4284: Domain of unknown function (DUF4284)
Probab=20.33 E-value=1.4e+02 Score=15.19 Aligned_cols=18 Identities=22% Similarity=0.698 Sum_probs=13.4
Q ss_pred eEEEcCCCCCCcHHHHHHhhc
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFA 38 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~ 38 (59)
.||+|+.+ +++++.+.|.
T Consensus 3 siWiG~f~---s~~el~~Y~e 20 (122)
T PF14112_consen 3 SIWIGNFK---SEDELEEYFE 20 (122)
T ss_pred EEEEecCC---CHHHHHHHhC
Confidence 58899654 7778888774
No 203
>PRK13395 ureidoglycolate hydrolase; Provisional
Probab=20.28 E-value=66 Score=17.68 Aligned_cols=12 Identities=50% Similarity=0.930 Sum_probs=10.2
Q ss_pred HhhccCCCeEEE
Q psy10283 35 KIFAPFGTIEEC 46 (59)
Q Consensus 35 ~~F~~~G~i~~~ 46 (59)
+.|.+||.|.+.
T Consensus 12 eaFaPfG~VI~~ 23 (171)
T PRK13395 12 EAFAPFGDVIEL 23 (171)
T ss_pred HHcCccceeEec
Confidence 579999998885
Done!