Query psy10283
Match_columns 59
No_of_seqs 142 out of 1181
Neff 9.6
Searched_HMMs 29240
Date Fri Aug 16 22:29:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10283.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10283hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s79_A Lupus LA protein; RRM, 99.6 3E-15 1E-19 73.5 6.1 51 8-58 3-53 (103)
2 4fxv_A ELAV-like protein 1; RN 99.6 1.7E-15 5.8E-20 73.9 5.1 44 15-58 18-62 (99)
3 3s8s_A Histone-lysine N-methyl 99.6 8.5E-15 2.9E-19 72.6 5.6 45 14-58 4-49 (110)
4 3s7r_A Heterogeneous nuclear r 99.6 1.4E-14 4.7E-19 68.6 5.7 47 12-58 7-54 (87)
5 2dgs_A DAZ-associated protein 99.5 4.7E-14 1.6E-18 68.2 7.1 48 11-58 5-53 (99)
6 1x4e_A RNA binding motif, sing 99.5 4.4E-14 1.5E-18 66.6 6.6 46 13-58 2-48 (85)
7 2rs2_A Musashi-1, RNA-binding 99.5 3.9E-14 1.3E-18 69.9 5.7 45 14-58 23-68 (109)
8 4f02_A Polyadenylate-binding p 99.5 2E-14 6.8E-19 77.3 4.8 47 12-58 11-58 (213)
9 2dnz_A Probable RNA-binding pr 99.5 1.2E-13 4.2E-18 66.2 6.9 46 13-58 2-48 (95)
10 2e5h_A Zinc finger CCHC-type a 99.5 1.2E-13 4.2E-18 66.0 6.7 47 12-58 12-59 (94)
11 2la6_A RNA-binding protein FUS 99.5 8.2E-14 2.8E-18 67.4 5.7 48 11-58 8-64 (99)
12 1x5u_A Splicing factor 3B subu 99.5 1.3E-13 4.4E-18 67.2 6.0 47 12-58 11-58 (105)
13 2cqg_A TDP-43, TAR DNA-binding 99.5 1.1E-13 3.8E-18 67.3 5.7 47 12-58 11-58 (103)
14 2div_A TRNA selenocysteine ass 99.5 6.6E-14 2.3E-18 67.6 4.8 47 12-58 5-53 (99)
15 2dnm_A SRP46 splicing factor; 99.5 1.6E-13 5.5E-18 66.7 6.2 46 13-58 10-56 (103)
16 2khc_A Testis-specific RNP-typ 99.5 1.7E-13 5.7E-18 68.0 6.2 44 15-58 39-83 (118)
17 3bs9_A Nucleolysin TIA-1 isofo 99.5 7.1E-14 2.4E-18 66.0 4.5 46 13-58 3-49 (87)
18 2dnh_A Bruno-like 5, RNA bindi 99.5 1.8E-13 6E-18 66.7 6.0 45 14-58 13-57 (105)
19 1whw_A Hypothetical protein ri 99.5 1.6E-13 5.4E-18 66.3 5.8 46 13-58 5-51 (99)
20 1x4h_A RNA-binding protein 28; 99.5 1.6E-13 5.5E-18 67.3 5.9 46 13-58 12-58 (111)
21 1uaw_A Mouse-musashi-1; RNP-ty 99.5 6.8E-14 2.3E-18 64.8 4.2 42 17-58 1-43 (77)
22 2lxi_A RNA-binding protein 10; 99.5 9.6E-15 3.3E-19 70.1 1.3 43 16-58 1-45 (91)
23 2dgp_A Bruno-like 4, RNA bindi 99.5 6.1E-14 2.1E-18 68.4 4.2 47 12-58 9-56 (106)
24 2cqd_A RNA-binding region cont 99.5 2.6E-13 8.9E-18 67.2 6.5 46 13-58 14-60 (116)
25 1wg5_A Heterogeneous nuclear r 99.5 1.8E-13 6.2E-18 66.9 5.8 47 12-58 11-58 (104)
26 2dh8_A DAZ-associated protein 99.5 9.7E-14 3.3E-18 67.7 4.8 47 12-58 12-59 (105)
27 2lkz_A RNA-binding protein 5; 99.5 6.7E-14 2.3E-18 67.9 4.1 44 15-58 8-54 (95)
28 3mdf_A Peptidyl-prolyl CIS-tra 99.5 9.1E-14 3.1E-18 65.4 4.4 46 13-58 4-50 (85)
29 2cph_A RNA binding motif prote 99.5 2.6E-13 8.9E-18 66.2 6.0 47 12-58 11-59 (107)
30 2m2b_A RNA-binding protein 10; 99.5 5.8E-14 2E-18 71.0 3.8 45 15-59 22-69 (131)
31 2cq0_A Eukaryotic translation 99.5 1.8E-13 6.3E-18 66.5 5.3 46 13-58 12-58 (103)
32 2do4_A Squamous cell carcinoma 99.5 2.8E-13 9.5E-18 65.5 5.9 46 13-58 14-59 (100)
33 2ywk_A Putative RNA-binding pr 99.4 1.3E-13 4.3E-18 66.1 4.5 46 13-58 13-58 (95)
34 3ucg_A Polyadenylate-binding p 99.4 2.8E-13 9.6E-18 64.2 5.7 43 16-58 6-49 (89)
35 2x1f_A MRNA 3'-END-processing 99.4 2.2E-13 7.4E-18 65.6 5.2 43 16-58 2-45 (96)
36 2cqc_A Arginine/serine-rich sp 99.4 1.8E-13 6.2E-18 65.5 4.9 46 13-58 12-58 (95)
37 1x5s_A Cold-inducible RNA-bind 99.4 2E-13 6.9E-18 66.2 5.1 47 12-58 8-55 (102)
38 2do0_A HnRNP M, heterogeneous 99.4 3.6E-13 1.2E-17 66.4 6.0 46 13-58 12-57 (114)
39 2kxn_B Transformer-2 protein h 99.4 3.4E-13 1.2E-17 68.3 6.0 45 14-58 44-89 (129)
40 2cqb_A Peptidyl-prolyl CIS-tra 99.4 2.2E-13 7.6E-18 66.0 5.0 46 13-58 9-55 (102)
41 2cpz_A CUG triplet repeat RNA- 99.4 1.9E-13 6.4E-18 67.6 4.8 45 14-58 23-68 (115)
42 3md1_A Nuclear and cytoplasmic 99.4 2.3E-13 7.9E-18 63.7 4.8 42 17-58 2-44 (83)
43 4f25_A Polyadenylate-binding p 99.4 9.7E-14 3.3E-18 68.9 3.7 39 15-53 4-42 (115)
44 2dhg_A TRNA selenocysteine ass 99.4 2.9E-13 1E-17 65.8 5.3 47 12-58 5-52 (104)
45 3ns6_A Eukaryotic translation 99.4 3.9E-14 1.3E-18 68.9 2.1 45 14-58 4-55 (100)
46 2mss_A Protein (musashi1); RNA 99.4 9.7E-14 3.3E-18 64.1 3.4 41 18-58 1-42 (75)
47 2jrs_A RNA-binding protein 39; 99.4 2.4E-13 8E-18 67.0 4.8 45 14-58 24-69 (108)
48 3p5t_L Cleavage and polyadenyl 99.4 6.8E-14 2.3E-18 66.8 2.8 42 17-58 2-46 (90)
49 1x5o_A RNA binding motif, sing 99.4 5.1E-13 1.8E-17 65.9 6.1 46 13-58 22-67 (114)
50 2j8a_A Histone-lysine N-methyl 99.4 9.3E-14 3.2E-18 71.0 3.4 43 17-59 3-50 (136)
51 3n9u_C Cleavage and polyadenyl 99.4 1.7E-13 5.8E-18 71.4 4.4 44 15-58 54-100 (156)
52 2cq4_A RNA binding motif prote 99.4 4.8E-13 1.6E-17 66.0 5.9 43 16-58 25-68 (114)
53 2hgl_A HNRPF protein, heteroge 99.4 1.3E-13 4.5E-18 70.6 3.8 46 13-58 41-89 (136)
54 2dgo_A Cytotoxic granule-assoc 99.4 4.1E-13 1.4E-17 66.3 5.5 46 13-58 12-58 (115)
55 1wez_A HnRNP H', FTP-3, hetero 99.4 3.2E-13 1.1E-17 66.0 5.0 45 13-58 12-56 (102)
56 2cpy_A RNA-binding protein 12; 99.4 3E-13 1E-17 67.0 4.9 47 13-59 12-59 (114)
57 1p27_B RNA-binding protein 8A; 99.4 3.4E-13 1.1E-17 65.8 4.8 44 15-58 22-66 (106)
58 1x4b_A Heterogeneous nuclear r 99.4 4.8E-13 1.6E-17 66.2 5.5 43 16-58 27-70 (116)
59 3ulh_A THO complex subunit 4; 99.4 4.6E-13 1.6E-17 65.4 5.3 46 13-58 26-71 (107)
60 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.4 6.3E-13 2.2E-17 67.3 6.0 44 15-58 62-106 (140)
61 2fy1_A RNA-binding motif prote 99.4 6.1E-13 2.1E-17 66.2 5.8 45 14-58 5-49 (116)
62 1oo0_B CG8781-PA, drosophila Y 99.4 4E-13 1.4E-17 65.9 5.0 44 15-58 25-69 (110)
63 1x5t_A Splicing factor 3B subu 99.4 2.7E-13 9.3E-18 65.0 4.2 45 14-58 3-49 (96)
64 2hgm_A HNRPF protein, heteroge 99.4 7.5E-13 2.6E-17 67.1 6.0 44 14-58 40-85 (126)
65 2cq3_A RNA-binding protein 9; 99.4 2.1E-12 7.2E-17 62.7 7.3 46 12-58 11-56 (103)
66 2dng_A Eukaryotic translation 99.4 7.6E-13 2.6E-17 64.3 5.6 46 12-58 11-57 (103)
67 2cjk_A Nuclear polyadenylated 99.4 4.2E-13 1.4E-17 69.1 4.9 44 15-58 2-46 (167)
68 2db1_A Heterogeneous nuclear r 99.4 2.3E-13 8E-18 67.9 3.8 46 13-58 14-62 (118)
69 2kt5_A RNA and export factor-b 99.4 9.8E-13 3.3E-17 65.8 6.0 45 14-58 33-77 (124)
70 2j76_E EIF-4B, EIF4B, eukaryot 99.4 2.5E-13 8.6E-18 65.9 3.6 45 13-58 16-62 (100)
71 2d9p_A Polyadenylate-binding p 99.4 9.5E-13 3.3E-17 63.9 5.7 45 13-58 12-56 (103)
72 1iqt_A AUF1, heterogeneous nuc 99.4 1.3E-13 4.5E-18 63.6 2.4 41 18-58 1-42 (75)
73 2lmi_A GRSF-1, G-rich sequence 99.4 2.4E-13 8.1E-18 66.7 3.4 47 12-58 7-56 (107)
74 2hgn_A Heterogeneous nuclear r 99.4 3.3E-13 1.1E-17 69.4 4.0 43 15-58 45-87 (139)
75 3ex7_B RNA-binding protein 8A; 99.4 9.1E-13 3.1E-17 65.9 5.5 44 15-58 21-65 (126)
76 1l3k_A Heterogeneous nuclear r 99.4 4.2E-13 1.4E-17 70.6 4.4 46 13-58 10-56 (196)
77 3d2w_A TAR DNA-binding protein 99.4 7.1E-13 2.4E-17 63.4 4.8 39 13-51 8-46 (89)
78 1wi8_A EIF-4B, eukaryotic tran 99.4 1.3E-12 4.5E-17 63.6 5.8 46 12-58 11-58 (104)
79 1sjq_A Polypyrimidine tract-bi 99.4 6.5E-13 2.2E-17 65.6 4.7 41 12-52 12-52 (105)
80 2kn4_A Immunoglobulin G-bindin 99.4 6.5E-13 2.2E-17 68.6 4.8 44 15-58 69-113 (158)
81 1u6f_A Tcubp1, RNA-binding pro 99.4 3.7E-13 1.3E-17 68.3 3.8 44 15-58 41-85 (139)
82 2xs2_A Deleted in azoospermia- 99.4 5.6E-13 1.9E-17 64.7 4.3 44 15-58 8-51 (102)
83 2dnn_A RNA-binding protein 12; 99.4 4E-13 1.4E-17 66.6 3.6 43 15-58 15-57 (109)
84 3q2s_C Cleavage and polyadenyl 99.4 7.1E-13 2.4E-17 72.5 4.8 44 15-58 67-113 (229)
85 2cpe_A RNA-binding protein EWS 99.4 1.2E-12 4.2E-17 64.4 4.9 45 14-58 13-66 (113)
86 2jwn_A Embryonic polyadenylate 99.4 6.3E-13 2.2E-17 66.4 3.9 43 16-58 36-79 (124)
87 2ki2_A SS-DNA binding protein 99.4 1.4E-13 4.8E-18 65.5 1.4 42 17-58 2-44 (90)
88 2err_A Ataxin-2-binding protei 99.4 1.4E-12 4.8E-17 64.2 5.0 44 14-58 27-70 (109)
89 2dgv_A HnRNP M, heterogeneous 99.4 2E-12 6.7E-17 61.6 5.4 46 12-58 4-49 (92)
90 2lea_A Serine/arginine-rich sp 99.4 6.3E-13 2.2E-17 67.7 3.7 44 15-58 46-90 (135)
91 1h2v_Z 20 kDa nuclear CAP bind 99.4 2E-12 7E-17 66.7 5.6 44 15-58 38-82 (156)
92 2dha_A FLJ20171 protein; RRM d 99.3 7.2E-13 2.5E-17 66.9 3.6 45 14-58 21-69 (123)
93 2dgx_A KIAA0430 protein; RRM d 99.3 1.8E-12 6.3E-17 62.4 4.9 43 12-54 5-51 (96)
94 2dis_A Unnamed protein product 99.3 1.2E-12 4.2E-17 64.0 4.3 45 14-58 6-53 (109)
95 4a8x_A RNA-binding protein wit 99.3 1.1E-12 3.9E-17 61.9 4.0 44 15-58 3-48 (88)
96 2dgw_A Probable RNA-binding pr 99.3 2.5E-12 8.6E-17 61.2 5.2 47 11-58 5-51 (91)
97 2krb_A Eukaryotic translation 99.3 2.1E-12 7.1E-17 60.5 4.6 42 16-58 1-48 (81)
98 1p1t_A Cleavage stimulation fa 99.3 6.5E-13 2.2E-17 64.5 3.0 44 15-58 7-51 (104)
99 1x4d_A Matrin 3; structural ge 99.3 2.5E-12 8.5E-17 63.2 5.0 39 14-52 13-52 (102)
100 2dnl_A Cytoplasmic polyadenyla 99.3 1.8E-12 6.2E-17 64.2 4.5 44 14-58 6-53 (114)
101 2cqp_A RNA-binding protein 12; 99.3 3.5E-13 1.2E-17 64.9 1.8 46 13-58 12-58 (98)
102 2cqi_A Nucleolysin TIAR; RNA r 99.3 4.6E-12 1.6E-16 61.5 5.8 45 13-58 12-56 (103)
103 2g4b_A Splicing factor U2AF 65 99.3 4.1E-12 1.4E-16 65.7 6.0 55 4-58 80-137 (172)
104 2cpf_A RNA binding motif prote 99.3 1.8E-12 6.3E-17 62.4 3.9 40 14-53 3-42 (98)
105 3r27_A HnRNP L, heterogeneous 99.3 5.8E-12 2E-16 61.7 5.6 38 14-51 19-56 (100)
106 3nmr_A Cugbp ELAV-like family 99.3 1.8E-12 6E-17 67.0 4.0 44 15-58 2-48 (175)
107 1wel_A RNA-binding protein 12; 99.3 5.4E-13 1.9E-17 66.8 2.0 46 13-58 22-68 (124)
108 1fxl_A Paraneoplastic encephal 99.3 3.8E-12 1.3E-16 65.3 5.1 43 16-58 2-45 (167)
109 3nmr_A Cugbp ELAV-like family 99.3 3E-12 1E-16 66.2 4.7 56 3-58 79-137 (175)
110 3md3_A Nuclear and cytoplasmic 99.3 7.3E-12 2.5E-16 64.2 6.1 56 3-58 70-130 (166)
111 2ek1_A RNA-binding protein 12; 99.3 4.1E-13 1.4E-17 64.3 1.2 45 14-58 13-58 (95)
112 1rk8_A CG8781-PA, CG8781-PA pr 99.3 4.4E-12 1.5E-16 66.1 5.2 44 15-58 71-115 (165)
113 2nlw_A Eukaryotic translation 99.3 6.3E-12 2.2E-16 61.4 5.3 43 15-58 14-62 (105)
114 2ad9_A Polypyrimidine tract-bi 99.3 4.9E-12 1.7E-16 63.6 4.9 38 14-51 29-66 (119)
115 1x4c_A Splicing factor, argini 99.3 1E-11 3.5E-16 60.9 5.9 39 13-51 12-50 (108)
116 1b7f_A Protein (SXL-lethal pro 99.3 3E-12 1E-16 65.9 4.2 44 15-58 2-46 (168)
117 1wf0_A TDP-43, TAR DNA-binding 99.3 4.9E-12 1.7E-16 59.9 4.6 38 14-51 3-40 (88)
118 3md3_A Nuclear and cytoplasmic 99.3 2.2E-12 7.4E-17 66.2 3.5 42 17-58 1-42 (166)
119 1l3k_A Heterogeneous nuclear r 99.3 7.8E-12 2.7E-16 65.7 5.6 44 15-58 103-147 (196)
120 2f3j_A RNA and export factor b 99.3 6.6E-12 2.3E-16 66.4 5.3 45 15-59 87-131 (177)
121 1b7f_A Protein (SXL-lethal pro 99.3 1.3E-11 4.3E-16 63.5 6.2 56 3-58 74-132 (168)
122 2cq1_A PTB-like protein L; RRM 99.3 1.2E-11 4.2E-16 60.5 5.8 38 14-51 13-50 (101)
123 1wex_A Hypothetical protein (r 99.3 1.9E-11 6.4E-16 60.0 6.4 37 15-51 14-50 (104)
124 3lqv_A PRE-mRNA branch site pr 99.3 1.9E-11 6.6E-16 60.2 6.3 41 12-52 4-44 (115)
125 1fxl_A Paraneoplastic encephal 99.3 1.1E-11 3.9E-16 63.5 5.6 56 3-58 73-131 (167)
126 2qfj_A FBP-interacting repress 99.3 1.1E-11 3.7E-16 66.0 5.3 43 16-58 28-71 (216)
127 2cpi_A CCR4-NOT transcription 99.3 1E-11 3.5E-16 61.2 4.7 41 13-53 12-55 (111)
128 2voo_A Lupus LA protein; RNA-b 99.2 1.2E-11 4E-16 66.2 5.0 43 16-58 109-151 (193)
129 2dgt_A RNA-binding protein 30; 99.2 1.7E-11 5.8E-16 58.5 4.7 40 12-51 6-45 (92)
130 2yh0_A Splicing factor U2AF 65 99.2 2.9E-11 9.9E-16 63.6 6.1 45 14-58 112-157 (198)
131 2dnp_A RNA-binding protein 14; 99.2 1.4E-11 4.8E-16 58.5 4.3 40 12-51 5-44 (90)
132 2qfj_A FBP-interacting repress 99.2 3.3E-11 1.1E-15 64.1 6.1 44 15-58 124-168 (216)
133 2ytc_A PRE-mRNA-splicing facto 99.2 3.1E-11 1.1E-15 56.6 5.2 39 13-51 9-47 (85)
134 3pgw_S U1-70K; protein-RNA com 99.2 2.6E-11 9E-16 71.3 5.8 44 15-58 101-145 (437)
135 2fc9_A NCL protein; structure 99.2 3.1E-11 1.1E-15 58.3 5.1 43 13-58 12-54 (101)
136 2e44_A Insulin-like growth fac 99.2 9.9E-12 3.4E-16 59.6 3.3 41 13-53 12-53 (96)
137 2dnq_A RNA-binding protein 4B; 99.2 4.4E-11 1.5E-15 56.8 5.5 38 12-49 4-41 (90)
138 1why_A Hypothetical protein ri 99.2 4.9E-11 1.7E-15 57.3 5.7 39 13-51 14-52 (97)
139 2lcw_A RNA-binding protein FUS 98.8 1.4E-12 4.7E-17 64.6 0.0 45 14-58 5-58 (116)
140 2a3j_A U1 small nuclear ribonu 99.2 4.3E-11 1.5E-15 60.6 5.5 43 14-58 27-73 (127)
141 2cpj_A Non-POU domain-containi 99.2 5.8E-11 2E-15 57.2 5.6 40 13-52 12-51 (99)
142 2e5g_A U6 snRNA-specific termi 99.2 1.1E-10 3.7E-15 55.9 6.4 38 14-53 6-43 (94)
143 1x4f_A Matrin 3; structural ge 99.2 2.2E-11 7.6E-16 60.7 4.0 38 14-51 23-61 (112)
144 1x4a_A Splicing factor, argini 99.2 7.5E-11 2.5E-15 57.7 5.8 38 14-51 20-57 (109)
145 3sde_A Paraspeckle component 1 99.2 3.3E-11 1.1E-15 66.4 4.8 51 4-58 88-138 (261)
146 2la4_A Nuclear and cytoplasmic 99.2 8.3E-11 2.8E-15 56.8 5.5 37 14-50 25-61 (101)
147 2cjk_A Nuclear polyadenylated 99.2 1.7E-11 5.8E-16 63.1 2.7 44 15-58 86-130 (167)
148 2dgu_A Heterogeneous nuclear r 99.1 7.8E-11 2.7E-15 57.2 4.5 38 14-51 9-46 (103)
149 2i2y_A Fusion protein consists 99.1 5.3E-11 1.8E-15 61.1 4.1 38 14-51 71-108 (150)
150 1x4g_A Nucleolysin TIAR; struc 99.1 7.5E-11 2.6E-15 57.7 4.3 38 14-51 23-60 (109)
151 2jvr_A Nucleolar protein 3; RN 99.1 2.6E-11 8.9E-16 60.2 2.7 47 3-50 16-63 (111)
152 3beg_B Splicing factor, argini 99.1 3E-11 1E-15 59.9 2.9 38 14-51 14-51 (115)
153 2xnq_A Nuclear polyadenylated 99.1 1.4E-10 4.8E-15 56.0 5.2 38 12-49 18-56 (97)
154 1fj7_A Nucleolin RBD1, protein 99.1 1.5E-12 5.2E-17 63.0 -1.9 43 15-58 16-59 (101)
155 2jvo_A Nucleolar protein 3; nu 99.1 1.4E-10 4.8E-15 57.0 5.1 36 14-49 29-64 (108)
156 2hvz_A Splicing factor, argini 99.1 5.9E-11 2E-15 57.3 3.5 35 17-51 1-35 (101)
157 4f02_A Polyadenylate-binding p 99.1 7E-11 2.4E-15 63.4 4.1 39 15-53 102-140 (213)
158 3smz_A Protein raver-1, ribonu 99.1 1.5E-10 5E-15 64.1 5.5 44 15-58 94-138 (284)
159 3smz_A Protein raver-1, ribonu 99.1 8.3E-11 2.8E-15 65.0 4.4 56 3-58 166-227 (284)
160 3tyt_A Heterogeneous nuclear r 99.1 1.9E-10 6.6E-15 61.8 5.5 38 15-52 3-41 (205)
161 2cpx_A Hypothetical protein FL 99.1 1.1E-11 3.8E-16 61.0 0.2 42 14-58 23-68 (115)
162 1wf1_A RNA-binding protein RAL 99.1 2.7E-10 9.3E-15 55.8 5.1 34 15-48 26-60 (110)
163 2kvi_A Nuclear polyadenylated 99.1 1.8E-10 6.1E-15 55.3 4.3 37 13-49 7-44 (96)
164 1whx_A Hypothetical protein ri 99.1 1.5E-10 5E-15 57.1 3.8 36 15-50 9-44 (111)
165 3pgw_A U1-A; protein-RNA compl 99.1 4.2E-10 1.5E-14 62.1 5.9 45 12-58 5-53 (282)
166 2wbr_A GW182, gawky, LD47780P; 99.1 2.5E-10 8.6E-15 54.9 4.2 37 15-51 6-42 (89)
167 1nu4_A U1A RNA binding domain; 99.1 2.5E-10 8.6E-15 54.6 4.3 37 13-49 5-45 (97)
168 2ghp_A U4/U6 snRNA-associated 99.1 2.3E-10 7.9E-15 63.5 4.5 44 15-58 209-255 (292)
169 2fc8_A NCL protein; structure 99.0 4.2E-10 1.4E-14 54.3 4.7 43 13-58 12-55 (102)
170 2adc_A Polypyrimidine tract-bi 99.0 2.5E-10 8.7E-15 61.8 4.2 41 12-52 30-71 (229)
171 2e5j_A Methenyltetrahydrofolat 99.0 3.2E-10 1.1E-14 54.5 4.0 36 15-51 18-53 (97)
172 2cpd_A Apobec-1 stimulating pr 99.0 8.7E-10 3E-14 53.0 5.6 36 14-49 13-50 (99)
173 3zzy_A Polypyrimidine tract-bi 99.0 5E-10 1.7E-14 57.0 4.8 37 15-51 27-63 (130)
174 2e5i_A Heterogeneous nuclear r 99.0 8.8E-10 3E-14 55.7 5.6 35 16-50 25-59 (124)
175 1sjr_A Polypyrimidine tract-bi 99.0 4.1E-10 1.4E-14 59.3 4.5 39 13-51 43-81 (164)
176 2ghp_A U4/U6 snRNA-associated 99.0 3.8E-10 1.3E-14 62.6 4.5 40 15-54 40-79 (292)
177 3egn_A RNA-binding protein 40; 99.0 7.9E-11 2.7E-15 60.0 1.1 35 12-46 41-75 (143)
178 2cq2_A Hypothetical protein LO 99.0 2.9E-10 9.8E-15 56.8 3.1 38 14-51 23-62 (114)
179 2cqh_A IGF-II mRNA-binding pro 99.0 4.7E-10 1.6E-14 53.4 3.1 37 12-48 4-41 (93)
180 3tyt_A Heterogeneous nuclear r 99.0 3.3E-10 1.1E-14 60.9 2.7 37 16-52 123-161 (205)
181 1fje_B Nucleolin RBD12, protei 98.9 2.5E-09 8.6E-14 55.3 5.8 52 3-58 82-137 (175)
182 2hzc_A Splicing factor U2AF 65 98.9 7.1E-10 2.4E-14 52.0 3.1 38 14-51 4-52 (87)
183 1fjc_A Nucleolin RBD2, protein 98.9 2.1E-10 7.3E-15 54.8 0.8 33 14-46 14-46 (96)
184 1qm9_A Polypyrimidine tract-bi 98.9 1.3E-09 4.5E-14 57.5 3.6 37 16-52 3-40 (198)
185 3sde_A Paraspeckle component 1 98.9 2.2E-09 7.5E-14 59.1 4.3 38 15-52 21-58 (261)
186 3u1l_A PRE-mRNA-splicing facto 98.8 3E-09 1E-13 58.8 3.9 37 15-51 133-178 (240)
187 3pgw_A U1-A; protein-RNA compl 98.8 8.5E-09 2.9E-13 56.9 5.6 38 15-52 206-243 (282)
188 1wg1_A KIAA1579 protein, homol 98.8 5.2E-09 1.8E-13 49.4 4.1 34 15-49 4-37 (88)
189 1x5p_A Negative elongation fac 98.8 2.2E-08 7.5E-13 47.9 6.1 34 14-49 13-46 (97)
190 1fje_B Nucleolin RBD12, protei 98.7 3.2E-10 1.1E-14 58.8 -2.0 46 12-58 9-55 (175)
191 2adc_A Polypyrimidine tract-bi 98.7 5.2E-08 1.8E-12 52.7 6.5 36 16-51 151-187 (229)
192 1qm9_A Polypyrimidine tract-bi 98.7 2.9E-08 1E-12 52.3 5.3 37 15-51 119-156 (198)
193 2bz2_A Negative elongation fac 98.7 3.6E-08 1.2E-12 49.2 4.8 34 14-49 37-70 (121)
194 2diu_A KIAA0430 protein; struc 98.7 5E-08 1.7E-12 47.4 4.5 31 16-46 8-44 (96)
195 3tht_A Alkylated DNA repair pr 98.6 2.8E-08 9.4E-13 57.3 3.9 38 13-50 15-54 (345)
196 2g4b_A Splicing factor U2AF 65 98.6 5.1E-08 1.7E-12 50.1 3.5 37 15-51 3-50 (172)
197 1owx_A Lupus LA protein, SS-B, 98.6 1.2E-07 4.1E-12 47.8 4.4 40 14-53 16-56 (121)
198 2pe8_A Splicing factor 45; RRM 98.6 2.4E-07 8.3E-12 45.3 5.4 44 15-58 7-57 (105)
199 2yh0_A Splicing factor U2AF 65 98.5 1.8E-07 6.1E-12 49.0 4.1 36 15-50 3-49 (198)
200 1jmt_A Splicing factor U2AF 35 98.2 1.2E-07 4E-12 46.3 -1.0 38 21-58 20-69 (104)
201 2d9o_A DNAJ (HSP40) homolog, s 98.2 1.6E-05 5.5E-10 38.6 6.5 24 26-49 27-50 (100)
202 2dit_A HIV TAT specific factor 98.1 1.7E-05 5.7E-10 38.7 5.9 39 13-52 12-61 (112)
203 3v4m_A Splicing factor U2AF 65 97.6 5.4E-05 1.9E-09 36.8 2.9 44 15-58 4-60 (105)
204 3ue2_A Poly(U)-binding-splicin 97.2 0.0009 3.1E-08 33.2 4.8 39 15-53 19-62 (118)
205 2dnr_A Synaptojanin-1; RRM dom 96.6 0.0047 1.6E-07 29.6 3.9 39 14-52 5-51 (91)
206 3s6e_A RNA-binding protein 39; 96.5 0.0018 6.3E-08 31.9 2.5 39 14-52 5-53 (114)
207 1whv_A Poly(A)-specific ribonu 95.9 0.021 7.3E-07 27.8 4.3 35 16-51 15-49 (100)
208 3dxb_A Thioredoxin N-terminall 95.2 0.011 3.8E-07 31.5 2.1 25 29-53 142-166 (222)
209 2l9w_A U4/U6 snRNA-associated- 95.1 0.028 9.6E-07 28.0 3.1 44 10-53 15-63 (117)
210 3ctr_A Poly(A)-specific ribonu 94.9 0.069 2.4E-06 26.0 4.2 33 18-51 7-39 (101)
211 1ufw_A Synaptojanin 2; RNP dom 94.6 0.012 4.2E-07 28.4 1.1 40 13-52 12-60 (95)
212 1uw4_A UPF3X; nonsense mediate 93.6 0.27 9.2E-06 23.4 4.8 32 17-48 2-33 (91)
213 2dhx_A Poly (ADP-ribose) polym 93.6 0.3 1E-05 23.9 5.9 35 14-48 6-45 (104)
214 3pq1_A Poly(A) RNA polymerase; 92.3 0.071 2.4E-06 32.2 1.9 33 16-49 53-85 (464)
215 2l08_A Regulator of nonsense t 89.7 0.27 9.4E-06 23.7 2.3 28 15-42 8-35 (97)
216 1wwh_A Nucleoporin 35, nucleop 83.9 1.8 6.1E-05 21.6 3.4 33 15-48 23-55 (119)
217 3fut_A Dimethyladenosine trans 79.4 2.9 9.8E-05 23.3 3.5 34 17-51 111-144 (271)
218 3uzu_A Ribosomal RNA small sub 78.9 1.1 3.8E-05 25.0 1.8 35 17-51 115-149 (279)
219 3tqs_A Ribosomal RNA small sub 75.5 1 3.5E-05 24.8 1.0 33 19-51 99-131 (255)
220 1wey_A Calcipressin 1; structu 72.4 6.2 0.00021 19.2 3.3 34 16-49 5-43 (104)
221 3d45_A Poly(A)-specific ribonu 71.4 8.7 0.0003 23.4 4.4 33 16-50 440-472 (507)
222 1qyr_A KSGA, high level kasuga 70.6 7 0.00024 21.4 3.6 33 18-50 92-124 (252)
223 1i4w_A Mitochondrial replicati 68.8 3.8 0.00013 23.8 2.4 21 19-39 145-165 (353)
224 3ftd_A Dimethyladenosine trans 67.9 4.9 0.00017 21.9 2.6 33 18-50 97-129 (249)
225 2jsh_A Appetite-regulating hor 56.4 5.5 0.00019 14.5 1.0 22 23-44 2-23 (26)
226 4dqz_A Methyltransferase type 53.8 9 0.00031 21.2 2.0 35 18-52 119-154 (230)
227 3p3d_A Nucleoporin 53; structu 45.0 10 0.00036 19.2 1.3 29 16-45 7-35 (132)
228 1eij_A Hypothetical protein MT 43.8 14 0.0005 17.0 1.6 19 22-40 50-68 (80)
229 3pve_A Agrin, AGRN protein; mR 40.2 6.5 0.00022 20.3 0.1 33 16-48 134-167 (189)
230 4aj5_1 SKA3, spindle and kinet 40.1 9.4 0.00032 18.5 0.7 11 31-41 91-101 (101)
231 1ik9_C DNA ligase IV; DNA END 36.8 23 0.00078 13.7 1.9 16 25-40 19-34 (37)
232 2fh0_A Hypothetical 16.0 kDa p 35.9 19 0.00064 16.7 1.3 19 22-40 48-66 (81)
233 1ytr_A Bacteriocin plantaricin 33.7 21 0.00073 12.5 1.4 11 31-41 15-25 (26)
234 2jd4_A Laminin subunit alpha-1 33.4 8.6 0.00029 21.9 -0.1 33 16-48 141-174 (383)
235 2r1b_A Neurexin-1-beta, neurex 31.8 43 0.0015 17.8 2.5 23 16-48 166-189 (220)
236 3dmc_A NTF2-like protein; stru 30.0 49 0.0017 15.9 2.4 16 41-56 118-133 (134)
237 1dyk_A Laminin alpha 2 chain; 29.5 11 0.00037 21.7 -0.1 33 16-48 154-187 (394)
238 3bod_A Neurexin-1-alpha; neure 27.7 56 0.0019 16.5 2.5 22 17-48 131-153 (178)
239 2cru_A Programmed cell death p 26.6 40 0.0014 16.7 1.7 20 22-41 80-99 (118)
240 2rd7_A Complement component C8 26.2 43 0.0015 19.4 2.0 20 23-42 195-214 (367)
241 2ki0_A DS119; beta-alpha-beta, 26.1 37 0.0013 12.8 1.2 12 14-25 3-14 (36)
242 2r1d_A Neurexin-1-beta, neurex 26.1 68 0.0023 17.1 2.7 22 17-48 165-187 (226)
243 1pz7_A Agrin; structural prote 24.6 30 0.001 18.0 1.1 33 16-48 147-181 (204)
244 2afh_E Nitrogenase iron protei 23.4 21 0.00073 19.4 0.4 22 25-46 256-277 (289)
245 2jxn_A Uncharacterized protein 22.4 53 0.0018 16.4 1.7 19 22-40 83-101 (127)
246 3v64_A Low-density lipoprotein 21.9 25 0.00085 18.1 0.5 33 16-48 134-168 (191)
247 2hvu_A PDCD5-like protein; YMR 21.9 54 0.0018 16.2 1.6 18 22-39 83-100 (116)
248 3cpt_A Mitogen-activated prote 20.7 91 0.0031 16.0 2.4 36 17-54 13-48 (143)
No 1
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3e-15 Score=73.54 Aligned_cols=51 Identities=10% Similarity=0.208 Sum_probs=45.3
Q ss_pred ccCCCCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 8 WNCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 8 ~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
|........++|||+|||+.+++++|+++|++||.|.++.++.|+.|++||
T Consensus 3 ~~~~~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG 53 (103)
T 1s79_A 3 WILKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG 53 (103)
T ss_dssp SCCSSCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCC
T ss_pred ccccccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCcc
Confidence 444555567899999999999999999999999999999999998888887
No 2
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.60 E-value=1.7e-15 Score=73.85 Aligned_cols=44 Identities=23% Similarity=0.508 Sum_probs=41.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.+++|||+|||..+++++|+++|++||.|.++++++|+. |++||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG 62 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLG 62 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccc
Confidence 568999999999999999999999999999999999988 88876
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.56 E-value=8.5e-15 Score=72.57 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=42.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+..++|||+||++.+++++|+++|++||.|.+++++.|+. |++||
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG 49 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLG 49 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceee
Confidence 3568999999999999999999999999999999999998 88887
No 4
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.55 E-value=1.4e-14 Score=68.63 Aligned_cols=47 Identities=32% Similarity=0.616 Sum_probs=42.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.....++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 54 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRG 54 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCcccc
Confidence 345678999999999999999999999999999999999987 87776
No 5
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.54 E-value=4.7e-14 Score=68.18 Aligned_cols=48 Identities=21% Similarity=0.463 Sum_probs=43.6
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 11 TPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 11 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+.....++|||+|||..+++++|+++|++||.|.+++++.|+. |+++|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 53 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRG 53 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCc
Confidence 3445778999999999999999999999999999999999987 88887
No 6
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.53 E-value=4.4e-14 Score=66.61 Aligned_cols=46 Identities=17% Similarity=0.325 Sum_probs=42.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+...++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 48 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKG 48 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCc
Confidence 34678999999999999999999999999999999999987 88887
No 7
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.52 E-value=3.9e-14 Score=69.86 Aligned_cols=45 Identities=33% Similarity=0.660 Sum_probs=40.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
...++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg 68 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 68 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCc
Confidence 3678999999999999999999999999999999999987 88887
No 8
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.51 E-value=2e-14 Score=77.33 Aligned_cols=47 Identities=28% Similarity=0.300 Sum_probs=40.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+....++|||||||+.+++++|+++|++||.|.++++++|+. |+++|
T Consensus 11 p~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G 58 (213)
T 4f02_A 11 PSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLG 58 (213)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccc
Confidence 344568999999999999999999999999999999999987 88776
No 9
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=1.2e-13 Score=66.15 Aligned_cols=46 Identities=39% Similarity=0.632 Sum_probs=42.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
++..++|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g 48 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKG 48 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceee
Confidence 34678999999999999999999999999999999999987 88877
No 10
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.50 E-value=1.2e-13 Score=66.04 Aligned_cols=47 Identities=26% Similarity=0.494 Sum_probs=42.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..+..++|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g 59 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKG 59 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTT
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCccc
Confidence 445678999999999999999999999999999999999988 88877
No 11
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.49 E-value=8.2e-14 Score=67.39 Aligned_cols=48 Identities=19% Similarity=0.326 Sum_probs=43.2
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEE--------EEEEeCCC-CCCCC
Q psy10283 11 TPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE--------CTVLKGPD-GTSKE 58 (59)
Q Consensus 11 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~--------~~v~~d~~-g~~rG 58 (59)
.++...++|||+|||..+++++|+++|+.||.|.+ ++++.|+. |+++|
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G 64 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKG 64 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeee
Confidence 34557889999999999999999999999999999 99999977 87776
No 12
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.3e-13 Score=67.16 Aligned_cols=47 Identities=19% Similarity=0.292 Sum_probs=42.7
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.....++|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 58 (105)
T 1x5u_A 11 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQG 58 (105)
T ss_dssp CCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCc
Confidence 344678999999999999999999999999999999999986 88887
No 13
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.48 E-value=1.1e-13 Score=67.25 Aligned_cols=47 Identities=28% Similarity=0.379 Sum_probs=42.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+....++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 58 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKG 58 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccc
Confidence 344678999999999999999999999999999999999987 87776
No 14
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=6.6e-14 Score=67.60 Aligned_cols=47 Identities=17% Similarity=0.288 Sum_probs=42.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeE-EEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIE-ECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~-~~~v~~d~~-g~~rG 58 (59)
+....++|||+|||..+++++|+++|++||.|. +++++.|+. |+++|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g 53 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAG 53 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCC
Confidence 345678999999999999999999999999999 999999986 77765
No 15
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.6e-13 Score=66.68 Aligned_cols=46 Identities=17% Similarity=0.384 Sum_probs=42.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....++|||+|||..+++++|+++|+.||.|.++.++.++. |+++|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g 56 (103)
T 2dnm_A 10 VDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRG 56 (103)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCS
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCe
Confidence 44678999999999999999999999999999999999988 88877
No 16
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.48 E-value=1.7e-13 Score=68.01 Aligned_cols=44 Identities=25% Similarity=0.409 Sum_probs=41.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 39 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g 83 (118)
T 2khc_A 39 EGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKC 83 (118)
T ss_dssp CSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCc
Confidence 467899999999999999999999999999999999987 88887
No 17
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.47 E-value=7.1e-14 Score=66.02 Aligned_cols=46 Identities=37% Similarity=0.562 Sum_probs=39.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.+..++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 49 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKG 49 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEE
T ss_pred CCCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccce
Confidence 34678999999999999999999999999999999999976 77665
No 18
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.47 E-value=1.8e-13 Score=66.69 Aligned_cols=45 Identities=67% Similarity=1.180 Sum_probs=40.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
...++|||+|||..+++++|+++|+.||.|.+++++.++.|+++|
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g 57 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKG 57 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCc
Confidence 457899999999999999999999999999999999997776665
No 19
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-13 Score=66.25 Aligned_cols=46 Identities=26% Similarity=0.379 Sum_probs=42.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 51 (99)
T 1whw_A 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKG 51 (99)
T ss_dssp CCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCe
Confidence 34678999999999999999999999999999999999986 88887
No 20
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=1.6e-13 Score=67.32 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=42.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....++|||+|||..+++++|+++|+.||.|.+++++.|+. |+++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 58 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKG 58 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcc
Confidence 34678999999999999999999999999999999999987 88776
No 21
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.47 E-value=6.8e-14 Score=64.78 Aligned_cols=42 Identities=36% Similarity=0.699 Sum_probs=39.4
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
++|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g 43 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRG 43 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCc
Confidence 4799999999999999999999999999999999987 88887
No 22
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.47 E-value=9.6e-15 Score=70.15 Aligned_cols=43 Identities=23% Similarity=0.478 Sum_probs=40.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCC-CeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFG-TIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G-~i~~~~v~~d~~-g~~rG 58 (59)
+..|||+|||+.+++++|+++|++|| .|.++++++|+. |++||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg 45 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRG 45 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCc
Confidence 35799999999999999999999999 899999999988 88887
No 23
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.47 E-value=6.1e-14 Score=68.44 Aligned_cols=47 Identities=36% Similarity=0.542 Sum_probs=42.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+....++|||+|||..+++++|+++|++||.|.+++++.|+. |+++|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 56 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKG 56 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcce
Confidence 344678999999999999999999999999999999999988 88887
No 24
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=2.6e-13 Score=67.20 Aligned_cols=46 Identities=35% Similarity=0.545 Sum_probs=42.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 60 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRG 60 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccce
Confidence 34678999999999999999999999999999999999987 88887
No 25
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.46 E-value=1.8e-13 Score=66.87 Aligned_cols=47 Identities=13% Similarity=0.126 Sum_probs=41.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEE-EEEEeCCCCCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE-CTVLKGPDGTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~-~~v~~d~~g~~rG 58 (59)
+....++|||+|||+.+++++|+++|+.||.|.+ +.++.+..|+++|
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G 58 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTG 58 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcce
Confidence 3446789999999999999999999999999998 8888885588887
No 26
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.46 E-value=9.7e-14 Score=67.68 Aligned_cols=47 Identities=26% Similarity=0.510 Sum_probs=42.3
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.....++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g 59 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRG 59 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcce
Confidence 345678999999999999999999999999999999999977 77765
No 27
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.46 E-value=6.7e-14 Score=67.93 Aligned_cols=44 Identities=7% Similarity=0.279 Sum_probs=40.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCC--eEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGT--IEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~--i~~~~v~~d~~-g~~rG 58 (59)
.-.+|||+|||+.+|+++|+++|++||. +.++++++|+. |++||
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG 54 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRG 54 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSS
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCce
Confidence 4568999999999999999999999995 67899999988 99998
No 28
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.46 E-value=9.1e-14 Score=65.39 Aligned_cols=46 Identities=20% Similarity=0.426 Sum_probs=41.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....++|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g 50 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRG 50 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECS
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCcccc
Confidence 45678999999999999999999999999999999999866 77776
No 29
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.46 E-value=2.6e-13 Score=66.20 Aligned_cols=47 Identities=21% Similarity=0.453 Sum_probs=42.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC-CC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG-PD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d-~~-g~~rG 58 (59)
.....++|||+|||..+++++|+++|+.||.|.+++++.+ +. |+++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g 59 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRG 59 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCS
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCc
Confidence 3446789999999999999999999999999999999999 55 88776
No 30
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.46 E-value=5.8e-14 Score=71.02 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=41.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEE--EEEEeCCC-CCCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE--CTVLKGPD-GTSKER 59 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~--~~v~~d~~-g~~rG~ 59 (59)
..++|||+|||+.+++++|+++|++||.|.. +++++|+. |++||.
T Consensus 22 ~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~ 69 (131)
T 2m2b_A 22 ANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGF 69 (131)
T ss_dssp CCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceE
Confidence 5679999999999999999999999999977 99999997 999883
No 31
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.45 E-value=1.8e-13 Score=66.49 Aligned_cols=46 Identities=30% Similarity=0.497 Sum_probs=41.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....++|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g 58 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKG 58 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceee
Confidence 34678999999999999999999999999999999999976 77765
No 32
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=2.8e-13 Score=65.54 Aligned_cols=46 Identities=20% Similarity=0.361 Sum_probs=41.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
....++|||+|||..+++++|+++|+.||.|.+++++.++.|+++|
T Consensus 14 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g 59 (100)
T 2do4_A 14 SLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKG 59 (100)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEe
Confidence 3467899999999999999999999999999999999988776665
No 33
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.45 E-value=1.3e-13 Score=66.12 Aligned_cols=46 Identities=26% Similarity=0.474 Sum_probs=41.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
....++|||+|||..+++++|+++|++||.|.+++++.++.|+++|
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g 58 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKS 58 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCce
Confidence 3467899999999999999999999999999999999998776665
No 34
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.45 E-value=2.8e-13 Score=64.17 Aligned_cols=43 Identities=19% Similarity=0.388 Sum_probs=40.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 49 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKG 49 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcce
Confidence 47899999999999999999999999999999999986 88776
No 35
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.45 E-value=2.2e-13 Score=65.58 Aligned_cols=43 Identities=19% Similarity=0.457 Sum_probs=40.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 45 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKG 45 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCS
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccce
Confidence 57899999999999999999999999999999999987 88776
No 36
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=1.8e-13 Score=65.49 Aligned_cols=46 Identities=26% Similarity=0.366 Sum_probs=41.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+...++|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g 58 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRG 58 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccc
Confidence 34678999999999999999999999999999999999987 77665
No 37
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2e-13 Score=66.18 Aligned_cols=47 Identities=34% Similarity=0.554 Sum_probs=42.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.....++|||+|||..+++++|+++|++||.|.+++++.++. ++++|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g 55 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRG 55 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCccc
Confidence 345678999999999999999999999999999999999987 88776
No 38
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.6e-13 Score=66.39 Aligned_cols=46 Identities=20% Similarity=0.341 Sum_probs=41.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
....++|||+|||..+++++|+++|++||.|.+++++.++.|+++|
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g 57 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRG 57 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeee
Confidence 3457899999999999999999999999999999999997776665
No 39
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.44 E-value=3.4e-13 Score=68.28 Aligned_cols=45 Identities=27% Similarity=0.392 Sum_probs=41.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
...++|||+|||..+++++|+++|+.||.|.+++++.|+. |+++|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G 89 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRG 89 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccce
Confidence 4578999999999999999999999999999999999987 88887
No 40
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.44 E-value=2.2e-13 Score=66.03 Aligned_cols=46 Identities=20% Similarity=0.426 Sum_probs=42.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....++|||+|||..+++++|+++|++||.|.+++++.|+. |+++|
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g 55 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRG 55 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcce
Confidence 34678999999999999999999999999999999999977 88876
No 41
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.44 E-value=1.9e-13 Score=67.61 Aligned_cols=45 Identities=27% Similarity=0.511 Sum_probs=41.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
...++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 68 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKC 68 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCc
Confidence 3568999999999999999999999999999999999986 77765
No 42
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.44 E-value=2.3e-13 Score=63.73 Aligned_cols=42 Identities=26% Similarity=0.419 Sum_probs=38.9
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.+|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 44 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRG 44 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccc
Confidence 5899999999999999999999999999999999976 77765
No 43
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.43 E-value=9.7e-14 Score=68.93 Aligned_cols=39 Identities=23% Similarity=0.489 Sum_probs=35.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
...+|||+|||+.+++++|+++|++||.|.+++|+.|..
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~ 42 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 42 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC
Confidence 456899999999999999999999999999999999864
No 44
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.43 E-value=2.9e-13 Score=65.78 Aligned_cols=47 Identities=23% Similarity=0.383 Sum_probs=41.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhcc-CCCeEEEEEEeCCCCCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAP-FGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~-~G~i~~~~v~~d~~g~~rG 58 (59)
+....++|||+|||..+++++|+++|+. ||.|.+++++.|+.|+++|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g 52 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKG 52 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccc
Confidence 3456789999999999999999999999 9999999999997776665
No 45
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.43 E-value=3.9e-14 Score=68.90 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=41.8
Q ss_pred CCCCeEEEcCCCC------CCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSK------QQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~------~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..+++|||+|||. .+++++|+++|++||.|.+++++.|+. |++||
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG 55 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKG 55 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECS
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccce
Confidence 3467899999999 999999999999999999999999998 88887
No 46
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.43 E-value=9.7e-14 Score=64.09 Aligned_cols=41 Identities=27% Similarity=0.556 Sum_probs=38.6
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 42 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRG 42 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCB
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCc
Confidence 589999999999999999999999999999999987 88887
No 47
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.43 E-value=2.4e-13 Score=66.99 Aligned_cols=45 Identities=38% Similarity=0.620 Sum_probs=40.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+..++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 24 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 69 (108)
T 2jrs_A 24 AGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKG 69 (108)
T ss_dssp SSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccce
Confidence 4678999999999999999999999999999999999876 77665
No 48
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.43 E-value=6.8e-14 Score=66.79 Aligned_cols=42 Identities=24% Similarity=0.412 Sum_probs=38.1
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCC--CeEEEEEEeCCC-CCCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFG--TIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G--~i~~~~v~~d~~-g~~rG 58 (59)
.+|||+|||+.+++++|+++|++|| .|.+++++.|+. |++||
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG 46 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKG 46 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCc
Confidence 4799999999999999999999999 999999999987 88876
No 49
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=5.1e-13 Score=65.88 Aligned_cols=46 Identities=22% Similarity=0.508 Sum_probs=41.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
....++|||+|||..+++++|+++|+.||.|.+++++.++.|+++|
T Consensus 22 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g 67 (114)
T 1x5o_A 22 EQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRG 67 (114)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcce
Confidence 3467899999999999999999999999999999999997666665
No 50
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=9.3e-14 Score=70.99 Aligned_cols=43 Identities=12% Similarity=0.261 Sum_probs=41.2
Q ss_pred CeEEEcCC----CCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCCC
Q psy10283 17 KKLFVGML----SKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKER 59 (59)
Q Consensus 17 ~~l~v~~L----~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG~ 59 (59)
.+|||+|| |+.+++..|+.+|+.||+|.++.++.|+. |+++|+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGf 50 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHV 50 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeE
Confidence 68999999 99999999999999999999999999999 999984
No 51
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.43 E-value=1.7e-13 Score=71.40 Aligned_cols=44 Identities=18% Similarity=0.326 Sum_probs=40.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCC--CeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFG--TIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G--~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||+.+++++|+++|+.|| .|.+++++.|+. |++||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skG 100 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKG 100 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccce
Confidence 357999999999999999999999999 999999999987 88876
No 52
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.43 E-value=4.8e-13 Score=66.04 Aligned_cols=43 Identities=16% Similarity=0.397 Sum_probs=40.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.++|||+|||..+++++|+++|+.||.|.+++++.|+. |+++|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 68 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKG 68 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCc
Confidence 46899999999999999999999999999999999988 88887
No 53
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.42 E-value=1.3e-13 Score=70.62 Aligned_cols=46 Identities=9% Similarity=0.014 Sum_probs=41.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCC---eEEEEEEeCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGT---IEECTVLKGPDGTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~---i~~~~v~~d~~g~~rG 58 (59)
....++|||+|||+++++++|+++|++||. |.+++++.|+.|++||
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG 89 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSG 89 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCe
Confidence 345789999999999999999999999999 8999999998888876
No 54
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.42 E-value=4.1e-13 Score=66.31 Aligned_cols=46 Identities=37% Similarity=0.611 Sum_probs=41.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 58 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKG 58 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcce
Confidence 34678999999999999999999999999999999999976 77665
No 55
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.2e-13 Score=66.01 Aligned_cols=45 Identities=20% Similarity=0.376 Sum_probs=39.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
+...++|||+|||+.+++++|+++|++||. .+++++.|+.|++||
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G 56 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTG 56 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEee
Confidence 446789999999999999999999999995 599999998787776
No 56
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3e-13 Score=67.03 Aligned_cols=47 Identities=11% Similarity=0.051 Sum_probs=42.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCe-EEEEEEeCCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTI-EECTVLKGPDGTSKER 59 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i-~~~~v~~d~~g~~rG~ 59 (59)
+...++|||+|||+.+++++|+++|+.||.| .+++++.|+.|+++|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~ 59 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQ 59 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSC
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceE
Confidence 3467899999999999999999999999999 8899999988888873
No 57
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=3.4e-13 Score=65.78 Aligned_cols=44 Identities=25% Similarity=0.361 Sum_probs=40.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.++.++.|+. |+++|
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g 66 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKG 66 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceee
Confidence 457899999999999999999999999999999999987 77765
No 58
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=4.8e-13 Score=66.22 Aligned_cols=43 Identities=30% Similarity=0.685 Sum_probs=40.5
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.++|||+|||..+++++|+++|+.||.|.++.++.++. |+++|
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 70 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRG 70 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCc
Confidence 47899999999999999999999999999999999987 88887
No 59
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.42 E-value=4.6e-13 Score=65.37 Aligned_cols=46 Identities=28% Similarity=0.455 Sum_probs=41.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
....++|||+|||..+++++|+++|++||.|.+++++.+..|+++|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g 71 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLG 71 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcce
Confidence 3457899999999999999999999999999999999998776665
No 60
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.41 E-value=6.3e-13 Score=67.28 Aligned_cols=44 Identities=20% Similarity=0.453 Sum_probs=41.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 62 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g 106 (140)
T 2ku7_A 62 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRG 106 (140)
T ss_dssp SCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCS
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCc
Confidence 577999999999999999999999999999999999977 88887
No 61
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.41 E-value=6.1e-13 Score=66.20 Aligned_cols=45 Identities=29% Similarity=0.518 Sum_probs=41.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
...++|||+|||..+++++|+++|+.||.|.++.++.+..|+++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g 49 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRG 49 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCccc
Confidence 457899999999999999999999999999999999988777776
No 62
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.41 E-value=4e-13 Score=65.94 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=40.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.++.++.++. |+++|
T Consensus 25 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 69 (110)
T 1oo0_B 25 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKG 69 (110)
T ss_dssp TBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcce
Confidence 567899999999999999999999999999999999987 88877
No 63
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.7e-13 Score=65.05 Aligned_cols=45 Identities=29% Similarity=0.584 Sum_probs=41.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEE-EEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC-TVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~-~v~~d~~-g~~rG 58 (59)
...++|||+|||..+++++|+++|++||.|.++ +++.|+. |+++|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g 49 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKG 49 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCe
Confidence 357899999999999999999999999999999 9999976 88877
No 64
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.41 E-value=7.5e-13 Score=67.11 Aligned_cols=44 Identities=16% Similarity=0.210 Sum_probs=39.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeE--EEEEEeCCCCCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIE--ECTVLKGPDGTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~--~~~v~~d~~g~~rG 58 (59)
...++|||+|||+.+++++|+++|+.| .|. +++++.|+.|++||
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrG 85 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITG 85 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCce
Confidence 356889999999999999999999999 677 89999998898887
No 65
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.41 E-value=2.1e-12 Score=62.69 Aligned_cols=46 Identities=26% Similarity=0.465 Sum_probs=40.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
.....++|||+|||..+++++|+++|+.||.|.+++++.+..+ ++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~-~~g 56 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG-SKG 56 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT-TCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-CcE
Confidence 3446789999999999999999999999999999999988653 454
No 66
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.40 E-value=7.6e-13 Score=64.34 Aligned_cols=46 Identities=24% Similarity=0.421 Sum_probs=41.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+....++|||+|||..+++++|+++|+.|| |.+++++.|+. |+++|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g 57 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKG 57 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccce
Confidence 344678999999999999999999999997 99999999987 87776
No 67
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.40 E-value=4.2e-13 Score=69.13 Aligned_cols=44 Identities=32% Similarity=0.675 Sum_probs=41.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 46 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRG 46 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCS
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccc
Confidence 357899999999999999999999999999999999987 88887
No 68
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.40 E-value=2.3e-13 Score=67.89 Aligned_cols=46 Identities=9% Similarity=0.045 Sum_probs=41.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCC---eEEEEEEeCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGT---IEECTVLKGPDGTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~---i~~~~v~~d~~g~~rG 58 (59)
....++|||+|||+.+++++|+++|+.||. |.+++++.|+.|+++|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G 62 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSG 62 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCe
Confidence 345788999999999999999999999999 8999999998888776
No 69
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.40 E-value=9.8e-13 Score=65.80 Aligned_cols=45 Identities=29% Similarity=0.441 Sum_probs=41.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
...++|||+|||..+++++|+++|+.||.|.+++++.++.|+++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g 77 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLG 77 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEee
Confidence 356799999999999999999999999999999999988777776
No 70
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.40 E-value=2.5e-13 Score=65.91 Aligned_cols=45 Identities=20% Similarity=0.400 Sum_probs=38.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC-C-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP-D-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~-~-g~~rG 58 (59)
....++|||+|||..+++++|+++|+.|| |.+++++.++ . |+++|
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g 62 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKG 62 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCS
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCe
Confidence 34678999999999999999999999999 9999999998 4 88887
No 71
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.40 E-value=9.5e-13 Score=63.92 Aligned_cols=45 Identities=33% Similarity=0.518 Sum_probs=39.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
....++|||+|||..+++++|+++|++||.|.+++++.+ .|+++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~~~g 56 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGRSKG 56 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSSEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCCcCE
Confidence 446789999999999999999999999999999999988 555554
No 72
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.39 E-value=1.3e-13 Score=63.59 Aligned_cols=41 Identities=29% Similarity=0.532 Sum_probs=38.6
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 42 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRG 42 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCC
Confidence 589999999999999999999999999999999987 88887
No 73
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.39 E-value=2.4e-13 Score=66.75 Aligned_cols=47 Identities=15% Similarity=0.073 Sum_probs=42.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCC---eEEEEEEeCCCCCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGT---IEECTVLKGPDGTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~---i~~~~v~~d~~g~~rG 58 (59)
+....++|||+|||+.+++++|+++|+.||. |.+++++.|+.|+++|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G 56 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRG 56 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCS
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEee
Confidence 3456789999999999999999999999998 8999999998888887
No 74
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.39 E-value=3.3e-13 Score=69.37 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=39.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
..++|||+|||+++++++|+++|++|| +.+++++.|++|++||
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srG 87 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTG 87 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCce
Confidence 567899999999999999999999999 7799999998888887
No 75
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.39 E-value=9.1e-13 Score=65.95 Aligned_cols=44 Identities=25% Similarity=0.361 Sum_probs=40.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.++.++.++. |+++|
T Consensus 21 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 65 (126)
T 3ex7_B 21 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKG 65 (126)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccce
Confidence 567999999999999999999999999999999999986 88776
No 76
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.39 E-value=4.2e-13 Score=70.60 Aligned_cols=46 Identities=30% Similarity=0.649 Sum_probs=42.0
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+...++|||+|||..+++++|+++|+.||.|.++.++.++. |+++|
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 56 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRG 56 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccc
Confidence 34678999999999999999999999999999999999987 87776
No 77
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.39 E-value=7.1e-13 Score=63.37 Aligned_cols=39 Identities=18% Similarity=0.447 Sum_probs=34.5
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
.....+|||+|||+++++++|+++|++||.|.+++++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~ 46 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP 46 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC
Confidence 446789999999999999999999999999999999876
No 78
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.39 E-value=1.3e-12 Score=63.59 Aligned_cols=46 Identities=22% Similarity=0.434 Sum_probs=40.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC--CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD--GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~--g~~rG 58 (59)
+....++|||+|||..+++++|+++|+.|| |.++.++.++. |+++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g 58 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKG 58 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCS
T ss_pred CCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCe
Confidence 334678999999999999999999999999 99999999876 67776
No 79
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.38 E-value=6.5e-13 Score=65.61 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=37.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
.+...++|||+|||+.+++++|+++|++||.|.+++++.++
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~k 52 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK 52 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCC
Confidence 34568899999999999999999999999999999998763
No 80
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.38 E-value=6.5e-13 Score=68.57 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=41.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.|+. |+++|
T Consensus 69 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g 113 (158)
T 2kn4_A 69 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRG 113 (158)
T ss_dssp BCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccce
Confidence 468999999999999999999999999999999999986 88887
No 81
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.38 E-value=3.7e-13 Score=68.33 Aligned_cols=44 Identities=20% Similarity=0.427 Sum_probs=40.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 41 ~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 85 (139)
T 1u6f_A 41 VLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRG 85 (139)
T ss_dssp TTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcce
Confidence 568999999999999999999999999999999999987 77665
No 82
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.38 E-value=5.6e-13 Score=64.66 Aligned_cols=44 Identities=27% Similarity=0.597 Sum_probs=40.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.|+.|+++|
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g 51 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKG 51 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccc
Confidence 46799999999999999999999999999999999997676665
No 83
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=4e-13 Score=66.58 Aligned_cols=43 Identities=23% Similarity=0.307 Sum_probs=39.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
...+|||+|||+.+++++|+++|+.| .|.+++++.|+.|+++|
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G 57 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNG 57 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCe
Confidence 34689999999999999999999999 89999999998898887
No 84
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.37 E-value=7.1e-13 Score=72.49 Aligned_cols=44 Identities=23% Similarity=0.387 Sum_probs=39.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCC--CeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFG--TIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G--~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+||++.+++++|+++|+.|| .|.+++|++|+. |++||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skG 113 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKG 113 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccce
Confidence 456899999999999999999999999 999999999987 88876
No 85
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.2e-12 Score=64.44 Aligned_cols=45 Identities=18% Similarity=0.358 Sum_probs=41.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeE--------EEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIE--------ECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~--------~~~v~~d~~-g~~rG 58 (59)
...++|||+|||..+++++|+++|+.||.|. .++++.|+. |+++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g 66 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKG 66 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeee
Confidence 4678999999999999999999999999999 699999976 88877
No 86
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.36 E-value=6.3e-13 Score=66.37 Aligned_cols=43 Identities=23% Similarity=0.420 Sum_probs=39.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 79 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKG 79 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCccc
Confidence 56899999999999999999999999999999999976 87776
No 87
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.36 E-value=1.4e-13 Score=65.46 Aligned_cols=42 Identities=19% Similarity=0.497 Sum_probs=39.5
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 44 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKG 44 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCE
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcce
Confidence 5799999999999999999999999999999999987 88876
No 88
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.36 E-value=1.4e-12 Score=64.17 Aligned_cols=44 Identities=25% Similarity=0.438 Sum_probs=38.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
...++|||+|||..+++++|+++|++||.|.+++++.+.. +++|
T Consensus 27 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~-~~kg 70 (109)
T 2err_A 27 SQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER-GSKG 70 (109)
T ss_dssp TCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT-BCTT
T ss_pred CCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC-CCce
Confidence 3678999999999999999999999999999999998864 3555
No 89
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.36 E-value=2e-12 Score=61.58 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=39.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
+....++|||+|||..+++++|+++|++||.|.+++++.+ .|+++|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-~g~~~g 49 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-NGKSKG 49 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-SSCEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-CCCcce
Confidence 3456789999999999999999999999999999999885 355554
No 90
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.36 E-value=6.3e-13 Score=67.71 Aligned_cols=44 Identities=18% Similarity=0.332 Sum_probs=41.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G 90 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRG 90 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccce
Confidence 567899999999999999999999999999999999987 88887
No 91
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.35 E-value=2e-12 Score=66.75 Aligned_cols=44 Identities=23% Similarity=0.265 Sum_probs=40.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|++||.|.++.++.++. ++++|
T Consensus 38 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g 82 (156)
T 1h2v_Z 38 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACG 82 (156)
T ss_dssp TCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccce
Confidence 568999999999999999999999999999999999987 77665
No 92
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=7.2e-13 Score=66.87 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=39.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCe----EEEEEEeCCCCCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI----EECTVLKGPDGTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i----~~~~v~~d~~g~~rG 58 (59)
....+|||+|||+++++++|+++|++||.| .++.++.|..|+++|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G 69 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTG 69 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEee
Confidence 356799999999999999999999999875 689999996688876
No 93
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.8e-12 Score=62.44 Aligned_cols=43 Identities=12% Similarity=0.189 Sum_probs=38.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HhhccCCCeEEEEEEeCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVR----KIFAPFGTIEECTVLKGPDG 54 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~----~~F~~~G~i~~~~v~~d~~g 54 (59)
+....++|||+|||..+++++|+ ++|++||.|.+++++.|+.+
T Consensus 5 ~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~ 51 (96)
T 2dgx_A 5 SSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDY 51 (96)
T ss_dssp CCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCST
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCC
Confidence 44567899999999999999999 99999999999999988754
No 94
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.35 E-value=1.2e-12 Score=64.03 Aligned_cols=45 Identities=16% Similarity=0.324 Sum_probs=40.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCC-eEEEEEE-eCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGT-IEECTVL-KGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~-i~~~~v~-~d~~-g~~rG 58 (59)
...++|||+|||..+++++|+++|+.||. |.++.++ .+.. |+++|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g 53 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRG 53 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCc
Confidence 45789999999999999999999999998 9999988 6766 78877
No 95
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.34 E-value=1.1e-12 Score=61.87 Aligned_cols=44 Identities=23% Similarity=0.382 Sum_probs=38.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CC-CCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GT-SKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~-~rG 58 (59)
..++|||+|||..+++++|+++|++||.|.++.++.+.. +. ++|
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g 48 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKG 48 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCc
Confidence 467999999999999999999999999999999998876 33 555
No 96
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.5e-12 Score=61.21 Aligned_cols=47 Identities=11% Similarity=0.146 Sum_probs=41.3
Q ss_pred CCCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 11 TPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 11 ~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
.+....++|||+|||..+++++|+++|+.| .|.+++++.+..|+++|
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g 51 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTG 51 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCce
Confidence 344567899999999999999999999999 99999999995587776
No 97
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.34 E-value=2.1e-12 Score=60.47 Aligned_cols=42 Identities=26% Similarity=0.383 Sum_probs=36.2
Q ss_pred CCeEEEcCCCCCC------cHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 16 DKKLFVGMLSKQQ------NEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~------~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
+++|||+|||..+ ++++|+++|++||.|.++.++ ...|+++|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~-~~~g~~~g 48 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKG 48 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC-CBTTBCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec-CCCCcEeE
Confidence 3689999999999 779999999999999999877 33378777
No 98
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.34 E-value=6.5e-13 Score=64.50 Aligned_cols=44 Identities=20% Similarity=0.477 Sum_probs=39.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g 51 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKG 51 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEE
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccce
Confidence 457899999999999999999999999999999999976 77665
No 99
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.34 E-value=2.5e-12 Score=63.15 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=35.8
Q ss_pred CCCCeEEEcCCCC-CCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 14 PPDKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 14 ~~~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
...++|||+|||+ .+++++|+++|++||.|.++.++.++
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k 52 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI 52 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC
Confidence 3578999999999 99999999999999999999998764
No 100
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.8e-12 Score=64.16 Aligned_cols=44 Identities=25% Similarity=0.400 Sum_probs=38.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC----CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD----GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~----g~~rG 58 (59)
...++|||+|||+.+++++|+++|++||.|. +.++.+.. |++||
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G 53 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKG 53 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTS
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCccc
Confidence 4578999999999999999999999999999 77777765 46776
No 101
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.33 E-value=3.5e-13 Score=64.93 Aligned_cols=46 Identities=17% Similarity=0.205 Sum_probs=40.1
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....++|||+|||..+++++|+++|+.||.|.++.++.++. |+++|
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g 58 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTG 58 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeee
Confidence 34568899999999999999999999999999888888766 77665
No 102
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=4.6e-12 Score=61.46 Aligned_cols=45 Identities=20% Similarity=0.411 Sum_probs=39.2
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
....++|||+|||..+++++|+++|++||.|.+++++.++.+ ++|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~~g 56 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS-NDP 56 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS-SCC
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC-CCC
Confidence 346789999999999999999999999999999999998653 344
No 103
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.33 E-value=4.1e-12 Score=65.66 Aligned_cols=55 Identities=33% Similarity=0.611 Sum_probs=45.9
Q ss_pred eeecccCC--CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 4 LDLIWNCT--PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 4 ~~~~~~~~--~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+++.++.. +....++|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 80 i~v~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 137 (172)
T 2g4b_A 80 LKIRRPHDYQPLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 137 (172)
T ss_dssp CEEECCSSCCCCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEE
T ss_pred eeecCCcccCCCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcce
Confidence 45555554 234578999999999999999999999999999999999975 87776
No 104
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.32 E-value=1.8e-12 Score=62.37 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=36.8
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
...++|||+|||..+++++|+++|++||.|.++.++.++.
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 42 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKN 42 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 3568999999999999999999999999999999998764
No 105
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.32 E-value=5.8e-12 Score=61.74 Aligned_cols=38 Identities=21% Similarity=0.296 Sum_probs=35.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
+.++.|||+|||+.+++++|+++|++||.|.++.++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~ 56 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK 56 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC
Confidence 45789999999999999999999999999999998764
No 106
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=1.8e-12 Score=67.04 Aligned_cols=44 Identities=32% Similarity=0.596 Sum_probs=39.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-C--CCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-G--TSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g--~~rG 58 (59)
..++|||+|||..+++++|+++|++||.|.+++++.++. | +++|
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g 48 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKG 48 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcce
Confidence 467999999999999999999999999999999999987 4 5555
No 107
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.31 E-value=5.4e-13 Score=66.84 Aligned_cols=46 Identities=11% Similarity=0.164 Sum_probs=38.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....++|||+|||+.+++++|+++|+.||.|.++.++.+.. |+++|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G 68 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATG 68 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCe
Confidence 34668999999999999999999999999998855555544 77766
No 108
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.31 E-value=3.8e-12 Score=65.30 Aligned_cols=43 Identities=26% Similarity=0.571 Sum_probs=39.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g 45 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLG 45 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEE
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCccee
Confidence 57899999999999999999999999999999999985 87766
No 109
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.31 E-value=3e-12 Score=66.18 Aligned_cols=56 Identities=45% Similarity=0.870 Sum_probs=45.3
Q ss_pred ceeecccCCCCC---CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 3 PLDLIWNCTPLP---PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~~~~---~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
++.+.++..... ..++|||+|||..+++++|+++|++||.|.+++++.++.|+++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g 137 (175)
T 3nmr_A 79 PIQMKPADSEKNNAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRG 137 (175)
T ss_dssp CCEEEECGGGCCSCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEE
T ss_pred ceEEccccccccccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEE
Confidence 344444444222 56799999999999999999999999999999999997777765
No 110
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.31 E-value=7.3e-12 Score=64.16 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=46.1
Q ss_pred ceeecccCCC----CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 3 PLDLIWNCTP----LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~~----~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
++++.|+... ....++|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 70 ~i~v~~~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 130 (166)
T 3md3_A 70 IVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRG 130 (166)
T ss_dssp ECEEEECCCCCCCCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEE
T ss_pred eeEEEEcCCCCCCCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcce
Confidence 3455565443 23567899999999999999999999999999999999976 77765
No 111
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.31 E-value=4.1e-13 Score=64.31 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=38.9
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
+..++|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g 58 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTG 58 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEee
Confidence 3468999999999999999999999999999888888776 77665
No 112
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.31 E-value=4.4e-12 Score=66.13 Aligned_cols=44 Identities=25% Similarity=0.413 Sum_probs=39.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|++||.|..+.++.++. |+++|
T Consensus 71 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g 115 (165)
T 1rk8_A 71 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKG 115 (165)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEee
Confidence 456899999999999999999999999999999999976 77765
No 113
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.30 E-value=6.3e-12 Score=61.42 Aligned_cols=43 Identities=26% Similarity=0.354 Sum_probs=37.5
Q ss_pred CCCeEEEcCCCCCC------cHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 15 PDKKLFVGMLSKQQ------NEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~------~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
..++|||+|||..+ ++++|+++|++||.|.++.++ ...|+++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~-~~~g~~~G 62 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP-EEDGKTKG 62 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC-CBTTBSCC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee-CCCCCeee
Confidence 46799999999999 789999999999999999988 33388877
No 114
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.30 E-value=4.9e-12 Score=63.61 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=35.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
+..++|||+|||+.+++++|+++|++||.|.++.++.+
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~ 66 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG 66 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC
Confidence 35788999999999999999999999999999999876
No 115
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.30 E-value=1e-11 Score=60.90 Aligned_cols=39 Identities=13% Similarity=0.195 Sum_probs=35.7
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
....++|||+|||+.+++++|+++|++||.|.++.++.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence 346789999999999999999999999999999998875
No 116
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.29 E-value=3e-12 Score=65.89 Aligned_cols=44 Identities=20% Similarity=0.505 Sum_probs=40.5
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g 46 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYG 46 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECS
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccce
Confidence 467999999999999999999999999999999999876 87776
No 117
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=4.9e-12 Score=59.92 Aligned_cols=38 Identities=24% Similarity=0.510 Sum_probs=35.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
...++|||+|||..+++++|+++|++||.|.+++++.+
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~ 40 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP 40 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC
Confidence 35689999999999999999999999999999998876
No 118
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.29 E-value=2.2e-12 Score=66.17 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=38.2
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
++|||+|||..+++++|+++|+.||.|.+++++.++.|+++|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g 42 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVN 42 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEE
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCC
Confidence 579999999999999999999999999999999998777765
No 119
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.29 E-value=7.8e-12 Score=65.73 Aligned_cols=44 Identities=27% Similarity=0.558 Sum_probs=40.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|..+.++.|+. |+++|
T Consensus 103 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 147 (196)
T 1l3k_A 103 TVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 147 (196)
T ss_dssp CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEE
T ss_pred CcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccc
Confidence 357899999999999999999999999999999999986 77776
No 120
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.29 E-value=6.6e-12 Score=66.44 Aligned_cols=45 Identities=29% Similarity=0.443 Sum_probs=41.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG~ 59 (59)
..++|||+|||..+++++|+++|+.||.|.++.++.+..|+++|.
T Consensus 87 ~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~ 131 (177)
T 2f3j_A 87 TGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGT 131 (177)
T ss_dssp TCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeE
Confidence 467999999999999999999999999999999999887777763
No 121
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.29 E-value=1.3e-11 Score=63.54 Aligned_cols=56 Identities=21% Similarity=0.408 Sum_probs=46.8
Q ss_pred ceeecccCCC--CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 3 PLDLIWNCTP--LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~~--~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
++++.|+.+. ....++|||+|||..+++++|+++|++||.|.++.++.+.. |+++|
T Consensus 74 ~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g 132 (168)
T 1b7f_A 74 RLKVSYARPGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRG 132 (168)
T ss_dssp ECEEEECCCCSSTTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEE
T ss_pred EEEEEecCCCcccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcce
Confidence 3556666653 33578999999999999999999999999999999999985 77665
No 122
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.28 E-value=1.2e-11 Score=60.47 Aligned_cols=38 Identities=29% Similarity=0.523 Sum_probs=35.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
+..++|||+|||+.+++++|+++|++||.|.++.++.+
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~ 50 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG 50 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence 35689999999999999999999999999999988875
No 123
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.28 E-value=1.9e-11 Score=60.05 Aligned_cols=37 Identities=22% Similarity=0.189 Sum_probs=34.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
..++|||+|||..+++++|+++|++||.|.++.++.+
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~ 50 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF 50 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC
Confidence 5689999999999999999999999999999988765
No 124
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.27 E-value=1.9e-11 Score=60.25 Aligned_cols=41 Identities=22% Similarity=0.462 Sum_probs=37.1
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
++...++|||+|||..+++++|+++|+.||.|.++.++.+.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~ 44 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTP 44 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECST
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC
Confidence 44567899999999999999999999999999999998764
No 125
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.27 E-value=1.1e-11 Score=63.48 Aligned_cols=56 Identities=20% Similarity=0.397 Sum_probs=46.4
Q ss_pred ceeecccCCCC--CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 3 PLDLIWNCTPL--PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~~~--~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
++++.|+.+.. ...++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 73 ~l~v~~~~~~~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g 131 (167)
T 1fxl_A 73 TIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG 131 (167)
T ss_dssp ECEEEECCCCCGGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEE
T ss_pred eEEEEecCCCcccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccc
Confidence 35566665532 3578899999999999999999999999999999999986 77665
No 126
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.26 E-value=1.1e-11 Score=66.00 Aligned_cols=43 Identities=28% Similarity=0.457 Sum_probs=38.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g 71 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKG 71 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCS
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCc
Confidence 56899999999999999999999999999999999986 88877
No 127
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.26 E-value=1e-11 Score=61.18 Aligned_cols=41 Identities=22% Similarity=0.377 Sum_probs=37.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH---HhhccCCCeEEEEEEeCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVR---KIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~---~~F~~~G~i~~~~v~~d~~ 53 (59)
....++|||+|||+.+++++|+ ++|++||.|.++.++.+..
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~ 55 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTS 55 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSS
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCC
Confidence 3457899999999999999999 9999999999999998875
No 128
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.25 E-value=1.2e-11 Score=66.19 Aligned_cols=43 Identities=9% Similarity=0.225 Sum_probs=39.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
.++|||+|||+.+++++|+++|++||.|.+++++.+..|+++|
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG 151 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKG 151 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEE
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCccc
Confidence 4789999999999999999999999999999999987777776
No 129
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=1.7e-11 Score=58.46 Aligned_cols=40 Identities=28% Similarity=0.536 Sum_probs=35.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
.....++|||+|||..+++++|+++|++||.|.++.++++
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~ 45 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 45 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC
Confidence 3456789999999999999999999999999999988643
No 130
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.23 E-value=2.9e-11 Score=63.61 Aligned_cols=45 Identities=31% Similarity=0.606 Sum_probs=40.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
...++|||+|||..+++++|+++|++||.|.++.++.++. |+++|
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 3568999999999999999999999999999999999975 77665
No 131
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.23 E-value=1.4e-11 Score=58.54 Aligned_cols=40 Identities=30% Similarity=0.510 Sum_probs=35.8
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
.....++|||+|||..+++++|+++|++||.|.+++++++
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~ 44 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 44 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC
Confidence 3456789999999999999999999999999999988754
No 132
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.23 E-value=3.3e-11 Score=64.13 Aligned_cols=44 Identities=25% Similarity=0.632 Sum_probs=40.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.+.. |+++|
T Consensus 124 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g 168 (216)
T 2qfj_A 124 AFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKG 168 (216)
T ss_dssp TSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEE
T ss_pred CCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCc
Confidence 457999999999999999999999999999999999976 77765
No 133
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.22 E-value=3.1e-11 Score=56.62 Aligned_cols=39 Identities=33% Similarity=0.462 Sum_probs=35.6
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
....++|||+|||..+++++|+++|++||.|.+++++.+
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~ 47 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR 47 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC
Confidence 346789999999999999999999999999999998864
No 134
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.22 E-value=2.6e-11 Score=71.32 Aligned_cols=44 Identities=23% Similarity=0.428 Sum_probs=40.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|.++|+.||.|..|.|+.|.. |+++|
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG 145 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRG 145 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccc
Confidence 357999999999999999999999999999999999976 88876
No 135
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=3.1e-11 Score=58.33 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=36.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
....++|||+|||..+++++|+++|++||.| +++.+..|+++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g 54 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKG 54 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEee
Confidence 4467899999999999999999999999987 566664477776
No 136
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.9e-12 Score=59.56 Aligned_cols=41 Identities=15% Similarity=0.315 Sum_probs=36.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEE-EEeCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECT-VLKGPD 53 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~-v~~d~~ 53 (59)
....++|||+|||..+++++|+++|+.||.|.+++ ++.++.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~ 53 (96)
T 2e44_A 12 RQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE 53 (96)
T ss_dssp CCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS
T ss_pred CCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC
Confidence 34578999999999999999999999999999994 777764
No 137
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.21 E-value=4.4e-11 Score=56.79 Aligned_cols=38 Identities=29% Similarity=0.693 Sum_probs=34.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEE
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
+....++|||+|||..+++++|+++|++||.|.++.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~ 41 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII 41 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE
Confidence 34577899999999999999999999999999999886
No 138
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.21 E-value=4.9e-11 Score=57.29 Aligned_cols=39 Identities=28% Similarity=0.508 Sum_probs=35.3
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
....++|||+|||..+++++|+++|++||.|.++.+..+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~ 52 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG 52 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC
Confidence 345789999999999999999999999999999988765
No 139
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.84 E-value=1.4e-12 Score=64.63 Aligned_cols=45 Identities=20% Similarity=0.361 Sum_probs=40.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEE--------EEEEeCCC-CCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE--------CTVLKGPD-GTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~--------~~v~~d~~-g~~rG 58 (59)
...++|||+|||..+++++|+++|+.||.|.+ ++++.|+. |+++|
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g 58 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKG 58 (116)
Confidence 35679999999999999999999999999999 88999877 77776
No 140
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=4.3e-11 Score=60.60 Aligned_cols=43 Identities=9% Similarity=0.216 Sum_probs=35.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHH----HhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVR----KIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~----~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
...++|||+|||+.+++++|+ ++|++||.|.++.+.. .|++||
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--~~~~rG 73 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--SDDNSG 73 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--CCSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--CCCcCC
Confidence 357899999999999998866 6999999999987753 366776
No 141
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.20 E-value=5.8e-11 Score=57.22 Aligned_cols=40 Identities=30% Similarity=0.581 Sum_probs=35.8
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
....++|||+|||..+++++|+++|++||.|.+++++.++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k 51 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK 51 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC
Confidence 3467899999999999999999999999999999988653
No 142
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=1.1e-10 Score=55.86 Aligned_cols=38 Identities=16% Similarity=0.371 Sum_probs=33.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
...++|||+|||..+++++|+++|++||.|.++ +.++.
T Consensus 6 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~ 43 (94)
T 2e5g_A 6 SGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKD 43 (94)
T ss_dssp TTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCC
Confidence 356799999999999999999999999999987 55554
No 143
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=2.2e-11 Score=60.66 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=34.6
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQ-QNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~-~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
...++|||+|||++ +++++|+++|++||.|.++.++++
T Consensus 23 ~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~ 61 (112)
T 1x4f_A 23 ELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM 61 (112)
T ss_dssp CCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT
T ss_pred CCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC
Confidence 35789999999998 999999999999999999998754
No 144
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=7.5e-11 Score=57.69 Aligned_cols=38 Identities=21% Similarity=0.490 Sum_probs=34.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
...++|||+|||..+++++|+++|++||.|.++++..+
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 57 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR 57 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC
Confidence 35689999999999999999999999999999998655
No 145
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.18 E-value=3.3e-11 Score=66.40 Aligned_cols=51 Identities=22% Similarity=0.349 Sum_probs=43.7
Q ss_pred eeecccCCCCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 4 LDLIWNCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 4 ~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
+++.|+.+ ..+|||+|||..+++++|+++|+.||.|.++.++.|..|+++|
T Consensus 88 l~v~~a~~----~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g 138 (261)
T 3sde_A 88 LRIRFATH----GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATG 138 (261)
T ss_dssp CEEEECCC----SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEE
T ss_pred eEeeeccc----CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCc
Confidence 45555543 5689999999999999999999999999999999996687776
No 146
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.17 E-value=8.3e-11 Score=56.80 Aligned_cols=37 Identities=22% Similarity=0.401 Sum_probs=34.1
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEe
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
...++|||+|||..+++++|+++|+.||.|.++++..
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~ 61 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYP 61 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEET
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEec
Confidence 4578999999999999999999999999999999874
No 147
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.15 E-value=1.7e-11 Score=63.08 Aligned_cols=44 Identities=25% Similarity=0.516 Sum_probs=40.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|++||.|.+++++.++. |+++|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g 130 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRG 130 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSE
T ss_pred CCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccce
Confidence 466899999999999999999999999999999999977 88887
No 148
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.14 E-value=7.8e-11 Score=57.18 Aligned_cols=38 Identities=34% Similarity=0.489 Sum_probs=34.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
...++|||+|||..+++++|+++|++||.|.++.++++
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~ 46 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD 46 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence 35689999999999999999999999999999988643
No 149
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.14 E-value=5.3e-11 Score=61.06 Aligned_cols=38 Identities=26% Similarity=0.555 Sum_probs=35.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
...++|||+|||+.+++++|+++|++||.|.+++++.+
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 108 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN 108 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC
Confidence 35689999999999999999999999999999999887
No 150
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=7.5e-11 Score=57.73 Aligned_cols=38 Identities=26% Similarity=0.552 Sum_probs=35.4
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
...++|||+|||..+++++|+++|+.||.|.+++++.+
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~ 60 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE 60 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 46789999999999999999999999999999999876
No 151
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.13 E-value=2.6e-11 Score=60.22 Aligned_cols=47 Identities=9% Similarity=-0.018 Sum_probs=34.1
Q ss_pred ceeecccCCCCCCCCeEEEcCCCCCCcHHHHHHhhccCC-CeEEEEEEe
Q psy10283 3 PLDLIWNCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFG-TIEECTVLK 50 (59)
Q Consensus 3 ~~~~~~~~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G-~i~~~~v~~ 50 (59)
++++.+... +....+|||+|||+.+++++|+++|++|| .|..+.+..
T Consensus 16 ~~~~~~~~~-p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~ 63 (111)
T 2jvr_A 16 PRGSHMSKL-PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT 63 (111)
T ss_dssp ----------CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS
T ss_pred ecchhcCCC-CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc
Confidence 344555544 34678999999999999999999999999 899988754
No 152
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.13 E-value=3e-11 Score=59.92 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=33.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
...++|||+|||..+++++|+++|++||.|.++.++.+
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence 35689999999999999999999999999999998765
No 153
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.13 E-value=1.4e-10 Score=55.98 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=33.7
Q ss_pred CCCCCCeEEEcCCCC-CCcHHHHHHhhccCCCeEEEEEE
Q psy10283 12 PLPPDKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
+.+..++|||+|||. .+++++|+++|+.||.|.++++.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~ 56 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 56 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 344688999999998 99999999999999999999873
No 154
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.13 E-value=1.5e-12 Score=63.00 Aligned_cols=43 Identities=14% Similarity=0.285 Sum_probs=37.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.. .++.+.. |+++|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g 59 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRK 59 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCc
Confidence 5779999999999999999999999999888 6666655 77776
No 155
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.12 E-value=1.4e-10 Score=56.98 Aligned_cols=36 Identities=31% Similarity=0.666 Sum_probs=33.5
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEE
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
...++|||+|||..+++++|+++|++||.|.++.++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 367899999999999999999999999999999886
No 156
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.12 E-value=5.9e-11 Score=57.34 Aligned_cols=35 Identities=17% Similarity=0.474 Sum_probs=33.2
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
++|||+|||..+++++|+++|++||.|.++.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN 35 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 47999999999999999999999999999999887
No 157
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.12 E-value=7e-11 Score=63.45 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=36.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
...+|||+|||..+++++|+++|+.||.|.+++|+.|..
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~ 140 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 140 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC
Confidence 467899999999999999999999999999999998864
No 158
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.12 E-value=1.5e-10 Score=64.05 Aligned_cols=44 Identities=27% Similarity=0.521 Sum_probs=40.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.++. |+++|
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g 138 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKG 138 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccce
Confidence 457999999999999999999999999999999999986 87776
No 159
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.11 E-value=8.3e-11 Score=65.03 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=45.5
Q ss_pred ceeecccCCCC-----CCCCeEEEcCCCCCC-cHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 3 PLDLIWNCTPL-----PPDKKLFVGMLSKQQ-NEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~~~-----~~~~~l~v~~L~~~~-~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
++++.|+.... ...++|||+|||..+ ++++|+++|+.||.|.+++++.++.|+++|
T Consensus 166 ~i~v~~a~~~~~~~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g 227 (284)
T 3smz_A 166 TLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKG 227 (284)
T ss_dssp ECEEEECCGGGCCTTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEE
T ss_pred EEEEEECCCCCCCcccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCccc
Confidence 34556655422 356789999999995 999999999999999999999998777765
No 160
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.11 E-value=1.9e-10 Score=61.85 Aligned_cols=38 Identities=26% Similarity=0.393 Sum_probs=35.2
Q ss_pred CCCeEEEcCCC-CCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 15 PDKKLFVGMLS-KQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 15 ~~~~l~v~~L~-~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
..++|||+||| ..+++++|+++|++||.|.+++++.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~ 41 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSK 41 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTS
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 56799999999 899999999999999999999998764
No 161
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=1.1e-11 Score=61.04 Aligned_cols=42 Identities=26% Similarity=0.452 Sum_probs=34.0
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCe----EEEEEEeCCCCCCCC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI----EECTVLKGPDGTSKE 58 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i----~~~~v~~d~~g~~rG 58 (59)
...++|||+|||..+++++|+++|+.||.| ..+++. .|+++|
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~---~g~~~g 68 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM---TGRMRG 68 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE---CSSSCS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC---CCccce
Confidence 456899999999999999999999999998 444444 355555
No 162
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.08 E-value=2.7e-10 Score=55.79 Aligned_cols=34 Identities=29% Similarity=0.733 Sum_probs=31.8
Q ss_pred CCCeEEEcCCCCC-CcHHHHHHhhccCCCeEEEEE
Q psy10283 15 PDKKLFVGMLSKQ-QNEDDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 15 ~~~~l~v~~L~~~-~~~~~l~~~F~~~G~i~~~~v 48 (59)
..++|||+|||.. +++++|+++|++||.|.++.+
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence 4589999999999 999999999999999999887
No 163
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.08 E-value=1.8e-10 Score=55.32 Aligned_cols=37 Identities=32% Similarity=0.786 Sum_probs=32.9
Q ss_pred CCCCCeEEEcCCCC-CCcHHHHHHhhccCCCeEEEEEE
Q psy10283 13 LPPDKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 13 ~~~~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
.+..++|||+|||. .+++++|+++|++||.|.++.+.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~ 44 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 44 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 34678999999998 99999999999999999999874
No 164
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.07 E-value=1.5e-10 Score=57.11 Aligned_cols=36 Identities=11% Similarity=0.303 Sum_probs=32.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEe
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
..++|||+|||..+++++|+++|++||.|.++.++.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~ 44 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE 44 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC
Confidence 356899999999999999999999999999998764
No 165
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.06 E-value=4.2e-10 Score=62.13 Aligned_cols=45 Identities=20% Similarity=0.474 Sum_probs=38.0
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHH----HhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVR----KIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~----~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
.....++|||+|||..+++++|+ ++|+.||.|.+++++. .|++||
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--~~~~~g 53 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--SLKMRG 53 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--CCCcce
Confidence 34568899999999999999976 8999999999998876 355665
No 166
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.06 E-value=2.5e-10 Score=54.88 Aligned_cols=37 Identities=14% Similarity=0.159 Sum_probs=33.9
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
....|||+||++.+++++|+++|++||+|.++++...
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~ 42 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLN 42 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETT
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCC
Confidence 4568999999999999999999999999999998763
No 167
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.06 E-value=2.5e-10 Score=54.60 Aligned_cols=37 Identities=24% Similarity=0.580 Sum_probs=33.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHH----HhhccCCCeEEEEEE
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVR----KIFAPFGTIEECTVL 49 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~----~~F~~~G~i~~~~v~ 49 (59)
.+..++|||+|||..+++++|+ ++|++||.|.++.++
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~ 45 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVS 45 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEE
Confidence 4567899999999999999999 999999999999876
No 168
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.05 E-value=2.3e-10 Score=63.45 Aligned_cols=44 Identities=23% Similarity=0.433 Sum_probs=39.6
Q ss_pred CCCeEEEcCCCCC-CcHHHHHHhhccCCCeEEEEEEeCCC--CCCCC
Q psy10283 15 PDKKLFVGMLSKQ-QNEDDVRKIFAPFGTIEECTVLKGPD--GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~~-~~~~~l~~~F~~~G~i~~~~v~~d~~--g~~rG 58 (59)
..++|||+|||.. +++++|+++|+.||.|..++++.+.. |+++|
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g 255 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNC 255 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCE
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCce
Confidence 4578999999999 99999999999999999999999887 77776
No 169
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=4.2e-10 Score=54.30 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=35.9
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
....++|||+|||..+++++|+++|+.|+ ++.++.++. |+++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g 55 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKG 55 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEE
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCc
Confidence 44678999999999999999999999774 677888876 77665
No 170
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.04 E-value=2.5e-10 Score=61.83 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=37.4
Q ss_pred CCCCCCeEEEcCCCC-CCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 12 PLPPDKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
+.+..++|||+|||. .+++++|+++|+.||.|.+++++.++
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~ 71 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK 71 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC
Confidence 445678999999999 99999999999999999999999875
No 171
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.03 E-value=3.2e-10 Score=54.47 Aligned_cols=36 Identities=14% Similarity=0.352 Sum_probs=32.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
..++|||+|||..+++++|+++|+.||.|. +.++.+
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~ 53 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ 53 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC
Confidence 578999999999999999999999999996 666654
No 172
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=8.7e-10 Score=53.04 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=32.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccC--CCeEEEEEE
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPF--GTIEECTVL 49 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~--G~i~~~~v~ 49 (59)
...++|||+|||..+++++|+++|++| |.|.++++.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~ 50 (99)
T 2cpd_A 13 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI 50 (99)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC
T ss_pred CCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe
Confidence 357899999999999999999999999 999998765
No 173
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.03 E-value=5e-10 Score=57.04 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=33.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
..-+|||+||++.+++++|+++|++||.|.++.+..+
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~ 63 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK 63 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC
Confidence 4457899999999999999999999999999988764
No 174
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.02 E-value=8.8e-10 Score=55.69 Aligned_cols=35 Identities=14% Similarity=0.142 Sum_probs=31.7
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEe
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
...|||+||++.+++++|+++|++||.|.++.+..
T Consensus 25 vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 25 VLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred EEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 34578999999999999999999999999998865
No 175
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.02 E-value=4.1e-10 Score=59.28 Aligned_cols=39 Identities=23% Similarity=0.322 Sum_probs=34.4
Q ss_pred CCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
+....+|||+||++.+++++|+++|++||.|.++.+..+
T Consensus 43 ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k 81 (164)
T 1sjr_A 43 QSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK 81 (164)
T ss_dssp CCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES
T ss_pred CCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC
Confidence 334567999999999999999999999999999998654
No 176
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.02 E-value=3.8e-10 Score=62.59 Aligned_cols=40 Identities=25% Similarity=0.262 Sum_probs=36.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 54 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g 54 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.+..+
T Consensus 40 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 79 (292)
T 2ghp_A 40 ELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK 79 (292)
T ss_dssp --CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC
Confidence 5789999999999999999999999999999999998754
No 177
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.00 E-value=7.9e-11 Score=60.01 Aligned_cols=35 Identities=26% Similarity=0.488 Sum_probs=30.9
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEE
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~ 46 (59)
+....++|||+|||+.+++++|+++|+.||.|..+
T Consensus 41 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 75 (143)
T 3egn_A 41 PGEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE 75 (143)
T ss_dssp CCSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccc
Confidence 34567899999999999999999999999998764
No 178
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=2.9e-10 Score=56.83 Aligned_cols=38 Identities=13% Similarity=0.235 Sum_probs=33.3
Q ss_pred CCCCeEEE--cCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 14 PPDKKLFV--GMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v--~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
...++||| |||+..+++++|+++|++||.|.++.++.+
T Consensus 23 ~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~ 62 (114)
T 2cq2_A 23 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN 62 (114)
T ss_dssp SCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT
T ss_pred CCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 35678999 779999999999999999999999877643
No 179
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.96 E-value=4.7e-10 Score=53.39 Aligned_cols=37 Identities=24% Similarity=0.361 Sum_probs=31.5
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCC-eEEEEE
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGT-IEECTV 48 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~-i~~~~v 48 (59)
.....++|||+|||..+++++|+++|++||. |..+.+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~ 41 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL 41 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE
Confidence 3456789999999999999999999999999 555544
No 180
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.96 E-value=3.3e-10 Score=60.95 Aligned_cols=37 Identities=16% Similarity=0.193 Sum_probs=33.8
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCe--EEEEEEeCC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTI--EECTVLKGP 52 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i--~~~~v~~d~ 52 (59)
.++|||+|||+.+++++|+++|++||.| .+++++.+.
T Consensus 123 ~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 123 SNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred cceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 4579999999999999999999999999 888888775
No 181
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.95 E-value=2.5e-09 Score=55.35 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=40.1
Q ss_pred ceeecccCCCC----CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCCCCCC
Q psy10283 3 PLDLIWNCTPL----PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 3 ~~~~~~~~~~~----~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g~~rG 58 (59)
++++.|+.... ...++|||+|||..+++++|+++|++||.|..+ ...|+++|
T Consensus 82 ~l~v~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~~~~~~~g 137 (175)
T 1fje_B 82 EIKLEKPKGRDSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV----SQDGKSKG 137 (175)
T ss_dssp EEEEECCCCSSCSTTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----CSSSSCCS
T ss_pred EEEEecCCCccccccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----cCCCCCce
Confidence 45666666532 246789999999999999999999999988765 33377776
No 182
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.94 E-value=7.1e-10 Score=52.04 Aligned_cols=38 Identities=16% Similarity=0.342 Sum_probs=34.3
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccC----C-------CeEEEEEEeC
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPF----G-------TIEECTVLKG 51 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~----G-------~i~~~~v~~d 51 (59)
...++|||+|||..+++++|+++|++| | .|.++++..+
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~ 52 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 52 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC
Confidence 356899999999999999999999999 8 9999988765
No 183
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.91 E-value=2.1e-10 Score=54.84 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=29.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEE
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~ 46 (59)
...++|||+|||..+++++|+++|+.||.|..+
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 356899999999999999999999999988765
No 184
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.90 E-value=1.3e-09 Score=57.49 Aligned_cols=37 Identities=16% Similarity=0.357 Sum_probs=34.7
Q ss_pred CCeEEEcCCCC-CCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 16 DKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 16 ~~~l~v~~L~~-~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
.++|||+|||. .+++++|+++|+.||.|.+++++.++
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~ 40 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK 40 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 57999999999 99999999999999999999998875
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.89 E-value=2.2e-09 Score=59.12 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=34.4
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
..++|||+|||..+++++|+++|+.||.|.++.+..++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k 58 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR 58 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC
Confidence 45789999999999999999999999999999987653
No 186
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.85 E-value=3e-09 Score=58.82 Aligned_cols=37 Identities=24% Similarity=0.482 Sum_probs=33.9
Q ss_pred CCCeEEEcCCCCCC---------cHHHHHHhhccCCCeEEEEEEeC
Q psy10283 15 PDKKLFVGMLSKQQ---------NEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 15 ~~~~l~v~~L~~~~---------~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
..++||||||+..+ ++++|+++|++||.|.+++++.+
T Consensus 133 ~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~ 178 (240)
T 3u1l_A 133 KNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES 178 (240)
T ss_dssp CCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG
T ss_pred CCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC
Confidence 56899999999998 79999999999999999998864
No 187
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.84 E-value=8.5e-09 Score=56.90 Aligned_cols=38 Identities=26% Similarity=0.471 Sum_probs=35.2
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
..++|||+|||..+++++|+++|+.||.|.+++++.++
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~ 243 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGR 243 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCC
Confidence 46789999999999999999999999999999998765
No 188
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.83 E-value=5.2e-09 Score=49.40 Aligned_cols=34 Identities=18% Similarity=0.372 Sum_probs=31.3
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEE
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
..++|||+|||..+++++|+++|++| .|.++++.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~ 37 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD 37 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe
Confidence 46789999999999999999999999 99998874
No 189
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=2.2e-08 Score=47.94 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=30.7
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEE
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
...++|||+|+ .+++++|+++|++||.|.++.+.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~ 46 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 46 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec
Confidence 35789999995 89999999999999999999885
No 190
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.74 E-value=3.2e-10 Score=58.77 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=35.6
Q ss_pred CCCCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCC-CCCCC
Q psy10283 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSKE 58 (59)
Q Consensus 12 ~~~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~-g~~rG 58 (59)
.+...++|||+|||..+++++|+++|+.||.+.. .++.+.. |+++|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g 55 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRK 55 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTT
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCcccc
Confidence 4456889999999999999999999999987666 2333333 66665
No 191
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.73 E-value=5.2e-08 Score=52.71 Aligned_cols=36 Identities=14% Similarity=0.373 Sum_probs=33.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCC-CeEEEEEEeC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFG-TIEECTVLKG 51 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G-~i~~~~v~~d 51 (59)
.++|||+|||..+++++|+++|++|| .|.+++++.+
T Consensus 151 ~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 151 SATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 187 (229)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence 57899999999999999999999999 9999998653
No 192
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.73 E-value=2.9e-08 Score=52.29 Aligned_cols=37 Identities=16% Similarity=0.432 Sum_probs=33.7
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCC-CeEEEEEEeC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFG-TIEECTVLKG 51 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G-~i~~~~v~~d 51 (59)
..++|||+|||..+++++|+++|+.|| .|.+++++.+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~ 156 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 156 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC
Confidence 367899999999999999999999999 9999998664
No 193
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.69 E-value=3.6e-08 Score=49.23 Aligned_cols=34 Identities=24% Similarity=0.331 Sum_probs=30.6
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEE
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
...++|||+|+ .+++++|+++|++||.|.++.+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~ 70 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD 70 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe
Confidence 35789999995 69999999999999999999886
No 194
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=5e-08 Score=47.39 Aligned_cols=31 Identities=16% Similarity=0.278 Sum_probs=26.4
Q ss_pred CCe-EEEcCCCCCCcHHH----HHHhhccC-CCeEEE
Q psy10283 16 DKK-LFVGMLSKQQNEDD----VRKIFAPF-GTIEEC 46 (59)
Q Consensus 16 ~~~-l~v~~L~~~~~~~~----l~~~F~~~-G~i~~~ 46 (59)
..+ |||+|||+.+++++ |+++|++| |+|.++
T Consensus 8 ~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 8 CHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp SSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred cceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 444 99999999999887 55899999 599886
No 195
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.64 E-value=2.8e-08 Score=57.34 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=32.6
Q ss_pred CCCCCeEEEcC--CCCCCcHHHHHHhhccCCCeEEEEEEe
Q psy10283 13 LPPDKKLFVGM--LSKQQNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 13 ~~~~~~l~v~~--L~~~~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
.....+||||| |++.+++++|+++|++||+|.++.+..
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~ 54 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP 54 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC
Confidence 34678999999 588999999999999999999876643
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.58 E-value=5.1e-08 Score=50.12 Aligned_cols=37 Identities=16% Similarity=0.365 Sum_probs=32.0
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccC----C-------CeEEEEEEeC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPF----G-------TIEECTVLKG 51 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~----G-------~i~~~~v~~d 51 (59)
..++|||+|||..+++++|+++|++| | .|.++.+..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~ 50 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD 50 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETT
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCC
Confidence 35799999999999999999999999 7 7787776544
No 197
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.56 E-value=1.2e-07 Score=47.77 Aligned_cols=40 Identities=15% Similarity=0.165 Sum_probs=36.3
Q ss_pred CCCCeEEEcCCCCC-CcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 14 PPDKKLFVGMLSKQ-QNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 14 ~~~~~l~v~~L~~~-~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
..++-|||+||+.. ++.++|+++|+.||.|..|.+..+..
T Consensus 16 ~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 16 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK 56 (121)
T ss_dssp CCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS
T ss_pred cCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC
Confidence 46788999999999 99999999999999999999887764
No 198
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.55 E-value=2.4e-07 Score=45.31 Aligned_cols=44 Identities=14% Similarity=0.375 Sum_probs=35.5
Q ss_pred CCCeEEEcCCCC-----CCcHHHHHHhhccCCCeEEEEEEeCCC--CCCCC
Q psy10283 15 PDKKLFVGMLSK-----QQNEDDVRKIFAPFGTIEECTVLKGPD--GTSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L~~-----~~~~~~l~~~F~~~G~i~~~~v~~d~~--g~~rG 58 (59)
..+.|++.|+.. .-.+++|++.|++||.|.++.|+.++. ++++|
T Consensus 7 ~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G 57 (105)
T 2pe8_A 7 PTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAV 57 (105)
T ss_dssp CCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSE
T ss_pred CCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcE
Confidence 467899999862 236789999999999999999999865 56776
No 199
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.49 E-value=1.8e-07 Score=49.01 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=30.1
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccC----C-------CeEEEEEEe
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPF----G-------TIEECTVLK 50 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~----G-------~i~~~~v~~ 50 (59)
..++|||+|||..+++++|+++|+.| | .|.++.+..
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~ 49 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ 49 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEET
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecC
Confidence 46899999999999999999999999 5 666666543
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.18 E-value=1.2e-07 Score=46.32 Aligned_cols=38 Identities=13% Similarity=0.232 Sum_probs=30.4
Q ss_pred EcCCCCCCcHHHHHHhh------------ccCCCeEEEEEEeCCCCCCCC
Q psy10283 21 VGMLSKQQNEDDVRKIF------------APFGTIEECTVLKGPDGTSKE 58 (59)
Q Consensus 21 v~~L~~~~~~~~l~~~F------------~~~G~i~~~~v~~d~~g~~rG 58 (59)
+.+|+..+++++|++.| ++||.|.++.++.+..|+++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G 69 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVG 69 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccE
Confidence 56677777887777666 999999999999887677776
No 201
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.16 E-value=1.6e-05 Score=38.56 Aligned_cols=24 Identities=8% Similarity=0.243 Sum_probs=22.3
Q ss_pred CCCcHHHHHHhhccCCCeEEEEEE
Q psy10283 26 KQQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 26 ~~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
..+++++|+++|++||.|.++.++
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~ 50 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLS 50 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEE
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEc
Confidence 568999999999999999999987
No 202
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.09 E-value=1.7e-05 Score=38.74 Aligned_cols=39 Identities=13% Similarity=0.279 Sum_probs=30.5
Q ss_pred CCCCCeEEEcCCCCCCc-----------HHHHHHhhccCCCeEEEEEEeCC
Q psy10283 13 LPPDKKLFVGMLSKQQN-----------EDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~~~-----------~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
+...+.|++.||..... +++|+++|++||.|.++.+ .|+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~ 61 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR 61 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC
Confidence 44678899999954432 5789999999999999955 554
No 203
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=97.60 E-value=5.4e-05 Score=36.81 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=32.1
Q ss_pred CCCeEEEcCC--CCCC--------cHHHHHHhhccCCCeEEEEEEeCCCC---CCCC
Q psy10283 15 PDKKLFVGML--SKQQ--------NEDDVRKIFAPFGTIEECTVLKGPDG---TSKE 58 (59)
Q Consensus 15 ~~~~l~v~~L--~~~~--------~~~~l~~~F~~~G~i~~~~v~~d~~g---~~rG 58 (59)
..+-|.+.|+ +... .+++|++.|++||.|.++.|++++.+ +++|
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G 60 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCG 60 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTT
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcE
Confidence 3456777886 2233 23689999999999999999988762 4555
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=97.25 E-value=0.0009 Score=33.19 Aligned_cols=39 Identities=10% Similarity=0.261 Sum_probs=30.7
Q ss_pred CCCeEEEcCCCC--C---CcHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 15 PDKKLFVGMLSK--Q---QNEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 15 ~~~~l~v~~L~~--~---~~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
..+.|++.|+-. . --+++|++.|++||.|.++.|+.++.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQ 62 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCC
Confidence 467789999732 1 23578999999999999999998754
No 205
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.57 E-value=0.0047 Score=29.61 Aligned_cols=39 Identities=18% Similarity=0.360 Sum_probs=28.0
Q ss_pred CCCCeEEEcCCCC----C-CcH---HHHHHhhccCCCeEEEEEEeCC
Q psy10283 14 PPDKKLFVGMLSK----Q-QNE---DDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 14 ~~~~~l~v~~L~~----~-~~~---~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
+...+++|...+. . ..+ .+|.+.|++||.|..++++.|+
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK 51 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 3456777766551 2 232 4688999999999999988764
No 206
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=96.55 E-value=0.0018 Score=31.89 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=27.1
Q ss_pred CCCCeEEEcCCCCCC----------cHHHHHHhhccCCCeEEEEEEeCC
Q psy10283 14 PPDKKLFVGMLSKQQ----------NEDDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~----------~~~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
...+-|.+.|+-..- -+++|++.|++||.|.++.+.++.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~ 53 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS 53 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC
Confidence 345567777762221 124788999999999999887664
No 207
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=95.91 E-value=0.021 Score=27.76 Aligned_cols=35 Identities=17% Similarity=0.410 Sum_probs=25.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
...||.-..|......+|..+|++||.+ .++++-|
T Consensus 15 r~HVf~l~FP~ewKt~DI~~lFs~fggv-~I~WidD 49 (100)
T 1whv_A 15 RDHVLHVTFPKEWKTSDLYQLFSAFGNI-QISWIDD 49 (100)
T ss_dssp CCSEEEEECCTTCCHHHHHHHHTTTCSC-CCEEEET
T ss_pred CCeEEEEeCChhhhhHHHHHHhhccCCE-EEEEEcC
Confidence 3344444999999999999999999853 3444433
No 208
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=95.24 E-value=0.011 Score=31.55 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=21.1
Q ss_pred cHHHHHHhhccCCCeEEEEEEeCCC
Q psy10283 29 NEDDVRKIFAPFGTIEECTVLKGPD 53 (59)
Q Consensus 29 ~~~~l~~~F~~~G~i~~~~v~~d~~ 53 (59)
.++++++.|++||.|.++.|..+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~ 166 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQ 166 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEEC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCC
Confidence 4578999999999999999986644
No 209
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=95.08 E-value=0.028 Score=28.01 Aligned_cols=44 Identities=7% Similarity=-0.002 Sum_probs=36.8
Q ss_pred CCCCCCCCeEEEcCCCCCCcHHHHHHhhccC-----CCeEEEEEEeCCC
Q psy10283 10 CTPLPPDKKLFVGMLSKQQNEDDVRKIFAPF-----GTIEECTVLKGPD 53 (59)
Q Consensus 10 ~~~~~~~~~l~v~~L~~~~~~~~l~~~F~~~-----G~i~~~~v~~d~~ 53 (59)
..+.+..+.+-+-+||..++...++.+.+++ |.+.++.+..|-.
T Consensus 15 ~~~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~ 63 (117)
T 2l9w_A 15 RNSKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN 63 (117)
T ss_dssp CCTTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT
T ss_pred cCCccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC
Confidence 3344567889999999999999999999999 9999988776643
No 210
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=94.90 E-value=0.069 Score=26.01 Aligned_cols=33 Identities=15% Similarity=0.365 Sum_probs=24.9
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
.+|.-..|......+|..+|++||. ..++++-|
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fgg-v~I~WidD 39 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGN-IQISWIDD 39 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEE-EEEEEEET
T ss_pred eEEEEeCChhhhhHHHHHHHhccCC-EEEEEEcC
Confidence 3444499999999999999999994 44555544
No 211
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=94.63 E-value=0.012 Score=28.38 Aligned_cols=40 Identities=23% Similarity=0.350 Sum_probs=29.6
Q ss_pred CCCCCeEEEcCCCCC------CcH---HHHHHhhccCCCeEEEEEEeCC
Q psy10283 13 LPPDKKLFVGMLSKQ------QNE---DDVRKIFAPFGTIEECTVLKGP 52 (59)
Q Consensus 13 ~~~~~~l~v~~L~~~------~~~---~~l~~~F~~~G~i~~~~v~~d~ 52 (59)
.+...+++|..++.. ..+ .+|.+.|++||.|..+++..|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~ 60 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ 60 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 345778888877632 232 3588899999999999988764
No 212
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=93.61 E-value=0.27 Score=23.36 Aligned_cols=32 Identities=9% Similarity=0.228 Sum_probs=26.5
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEE
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v 48 (59)
.+|-|.+||+..+++++.+.++....+.-...
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~f 33 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEF 33 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEE
Confidence 47889999999999999999998876654443
No 213
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.58 E-value=0.3 Score=23.87 Aligned_cols=35 Identities=11% Similarity=0.022 Sum_probs=29.2
Q ss_pred CCCCeEEEcCCCCCCcHHHHHHhhcc-C----CCeEEEEE
Q psy10283 14 PPDKKLFVGMLSKQQNEDDVRKIFAP-F----GTIEECTV 48 (59)
Q Consensus 14 ~~~~~l~v~~L~~~~~~~~l~~~F~~-~----G~i~~~~v 48 (59)
...++|.|.|||..+.++.|.-.|++ - |+|.+++.
T Consensus 6 ~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~ 45 (104)
T 2dhx_A 6 SGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR 45 (104)
T ss_dssp CCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE
T ss_pred cCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE
Confidence 45788999999999999999999987 2 67877754
No 214
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=92.33 E-value=0.071 Score=32.15 Aligned_cols=33 Identities=15% Similarity=0.360 Sum_probs=25.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~ 49 (59)
.+.|||. .+..+++.+|.+.|++||.|.++..-
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~ 85 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFY 85 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEE
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEE
Confidence 4579997 69999999999999999999987543
No 215
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=89.70 E-value=0.27 Score=23.70 Aligned_cols=28 Identities=7% Similarity=0.227 Sum_probs=22.8
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCC
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~ 42 (59)
..-+|-|..||+..|++++.+.++.+-.
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~~~l~~~~~ 35 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLEEQLRPLPA 35 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHTTTTSCCSS
T ss_pred cceeEEEeCCCCCCCHHHHHHHhCCcCc
Confidence 3458999999999999998887776544
No 216
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=83.85 E-value=1.8 Score=21.59 Aligned_cols=33 Identities=18% Similarity=0.179 Sum_probs=25.6
Q ss_pred CCCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEE
Q psy10283 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 48 (59)
Q Consensus 15 ~~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v 48 (59)
..+.|.|-+-|... ...+...|++||.|.+...
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc
Confidence 46788888888775 4456778999999998764
No 217
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=79.36 E-value=2.9 Score=23.29 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=27.8
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
.-..|+|+|+.++...+..+++. ..+.+..++..
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 45678999999999999998877 77777776654
No 218
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=78.85 E-value=1.1 Score=25.02 Aligned_cols=35 Identities=6% Similarity=-0.007 Sum_probs=28.4
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
.-..|+|||+.++..-+..+++....+..+.+|..
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 34678999999999999999987667777777654
No 219
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=75.48 E-value=1 Score=24.78 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=27.2
Q ss_pred EEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeC
Q psy10283 19 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 51 (59)
Q Consensus 19 l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d 51 (59)
..|+|+|+.++...+..+++....+....+|..
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 368999999999999999987777787777654
No 220
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=72.40 E-value=6.2 Score=19.18 Aligned_cols=34 Identities=9% Similarity=0.196 Sum_probs=25.1
Q ss_pred CCeEEEcCCCCCC-cH----HHHHHhhccCCCeEEEEEE
Q psy10283 16 DKKLFVGMLSKQQ-NE----DDVRKIFAPFGTIEECTVL 49 (59)
Q Consensus 16 ~~~l~v~~L~~~~-~~----~~l~~~F~~~G~i~~~~v~ 49 (59)
..+|+|.||+..+ .. +.++++|..|+.+......
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l 43 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF 43 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec
Confidence 4679999998765 22 4678899999987775443
No 221
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=71.39 E-value=8.7 Score=23.39 Aligned_cols=33 Identities=27% Similarity=0.545 Sum_probs=23.6
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEe
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
..-++++ .|..+...++.++|+.||.+ +++++-
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid 472 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID 472 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc
Confidence 3345555 88888889999999999954 444443
No 222
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=70.56 E-value=7 Score=21.38 Aligned_cols=33 Identities=12% Similarity=0.094 Sum_probs=24.7
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEe
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
-+.|+|+|+.++...+..+++....+..+.+|.
T Consensus 92 ~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~ 124 (252)
T 1qyr_A 92 LRVFGNLPYNISTPLMFHLFSYTDAIADMHFML 124 (252)
T ss_dssp EEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEE
T ss_pred eEEEECCCCCccHHHHHHHHhcCCCcceEEEEE
Confidence 467899999999988888777544566665553
No 223
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=68.80 E-value=3.8 Score=23.82 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=17.6
Q ss_pred EEEcCCCCCCcHHHHHHhhcc
Q psy10283 19 LFVGMLSKQQNEDDVRKIFAP 39 (59)
Q Consensus 19 l~v~~L~~~~~~~~l~~~F~~ 39 (59)
..|||||++++..-+..++..
T Consensus 145 ~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 145 LTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEECCSTTHHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHh
Confidence 678999999999888777763
No 224
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=67.91 E-value=4.9 Score=21.91 Aligned_cols=33 Identities=9% Similarity=-0.040 Sum_probs=25.1
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEe
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~ 50 (59)
-..++|+|+.++...+..+++....+....++.
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 467899999999998888887655555555554
No 225
>2jsh_A Appetite-regulating hormone, obestatin; micellar solution, DPC, SDS, alternative splicing, amidation, lipoprotein, secreted; NMR {Synthetic} PDB: 2jsj_A
Probab=56.37 E-value=5.5 Score=14.54 Aligned_cols=22 Identities=5% Similarity=-0.142 Sum_probs=13.6
Q ss_pred CCCCCCcHHHHHHhhccCCCeE
Q psy10283 23 MLSKQQNEDDVRKIFAPFGTIE 44 (59)
Q Consensus 23 ~L~~~~~~~~l~~~F~~~G~i~ 44 (59)
|.|+++.-.--.+-|.+||.+.
T Consensus 2 naPFeiGi~ls~~~y~~yG~~L 23 (26)
T 2jsh_A 2 NAPFDVGIKLSGAQYQQHGRAL 23 (26)
T ss_dssp CSCSSTTGGGHHHHCSCSSSCC
T ss_pred CCceeEeeEecHHHHHHHhHHh
Confidence 4566665544456778888653
No 226
>4dqz_A Methyltransferase type 12; ligase-activating, bacterial PNKP; 2.30A {Clostridium thermocellum} PDB: 4drf_B 4e6n_B*
Probab=53.83 E-value=9 Score=21.15 Aligned_cols=35 Identities=20% Similarity=0.311 Sum_probs=23.7
Q ss_pred eEEEcCCCCCCcHHHHHHhhccCCCeEEE-EEEeCC
Q psy10283 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC-TVLKGP 52 (59)
Q Consensus 18 ~l~v~~L~~~~~~~~l~~~F~~~G~i~~~-~v~~d~ 52 (59)
++-+.-||..-.++.++.+|++.|--..+ .+..|.
T Consensus 119 ~~~~p~lp~rgg~~l~~rLFePLGw~V~a~~~~ld~ 154 (230)
T 4dqz_A 119 KAKIMMLPCKGGEEIIYRLFEPLGYKVDVEGYMLDE 154 (230)
T ss_dssp EEEEEEEECTTHHHHHHHHHGGGTCEEEEEEC----
T ss_pred EEEeeeeecCCcHHHHHHhhccccceEeeeecccCc
Confidence 46677788888888899999999965443 444553
No 227
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=45.04 E-value=10 Score=19.20 Aligned_cols=29 Identities=28% Similarity=0.333 Sum_probs=20.1
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccCCCeEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEE 45 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~G~i~~ 45 (59)
...|.|-+-|...... +-+.|++||.|.+
T Consensus 7 e~~VtVFGFp~~~~~~-VI~~Fs~~G~IlE 35 (132)
T 3p3d_A 7 ELAILVFGYPETMANQ-VIAYFQEFGTILE 35 (132)
T ss_dssp -CEEEEECCCGGGHHH-HHHHHGGGSCBCS
T ss_pred ceEEEEEecCHHHHHH-HHHHHHhhceEee
Confidence 4466776666666554 5568999999876
No 228
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=43.77 E-value=14 Score=17.03 Aligned_cols=19 Identities=5% Similarity=0.392 Sum_probs=16.3
Q ss_pred cCCCCCCcHHHHHHhhccC
Q psy10283 22 GMLSKQQNEDDVRKIFAPF 40 (59)
Q Consensus 22 ~~L~~~~~~~~l~~~F~~~ 40 (59)
|.|...++++.|.++++..
T Consensus 50 Gqi~~ki~e~~L~~lL~~i 68 (80)
T 1eij_A 50 GRVRSKITDEQLKELLKRV 68 (80)
T ss_dssp CSSCCCCCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788999999999988764
No 229
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}
Probab=40.17 E-value=6.5 Score=20.32 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=17.9
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccC-CCeEEEEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTV 48 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~~~v 48 (59)
...+|||++|...........-..| |+|.++++
T Consensus 134 ~~~lyvGG~p~~~~~~~~~~~~~~F~GCi~~v~i 167 (189)
T 3pve_A 134 KEPLYVGGAPDFSKLARGAAVASGFDGAIQLVSL 167 (189)
T ss_dssp CSCEEESCCSCGGGSCGGGCCCSBCEEEEEEEEE
T ss_pred CCCEEECCcCchhhcccccccCCCCcEEceEEEE
Confidence 3469999998653210000112233 78887765
No 230
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=40.14 E-value=9.4 Score=18.49 Aligned_cols=11 Identities=27% Similarity=0.718 Sum_probs=8.0
Q ss_pred HHHHHhhccCC
Q psy10283 31 DDVRKIFAPFG 41 (59)
Q Consensus 31 ~~l~~~F~~~G 41 (59)
..|+++|++||
T Consensus 91 ~~ire~fqKYG 101 (101)
T 4aj5_1 91 MKIREYFQKYG 101 (101)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHcC
Confidence 46788888887
No 231
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=36.78 E-value=23 Score=13.74 Aligned_cols=16 Identities=6% Similarity=0.310 Sum_probs=12.5
Q ss_pred CCCCcHHHHHHhhccC
Q psy10283 25 SKQQNEDDVRKIFAPF 40 (59)
Q Consensus 25 ~~~~~~~~l~~~F~~~ 40 (59)
...++.++|+.+|...
T Consensus 19 ~rd~t~~eLk~il~~m 34 (37)
T 1ik9_C 19 FIDTDLNQLKEVFSGI 34 (37)
T ss_dssp SSCCCHHHHHHHHHTC
T ss_pred cCcCCHHHHHHHHHHc
Confidence 4567889999999765
No 232
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=35.86 E-value=19 Score=16.71 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=15.7
Q ss_pred cCCCCCCcHHHHHHhhccC
Q psy10283 22 GMLSKQQNEDDVRKIFAPF 40 (59)
Q Consensus 22 ~~L~~~~~~~~l~~~F~~~ 40 (59)
|.|...++++.|.++++..
T Consensus 48 Gqi~~ki~e~~L~~lL~~i 66 (81)
T 2fh0_A 48 NNVTHKITEAEIVSILNGI 66 (81)
T ss_dssp TCCSCCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788899999999887753
No 233
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=33.71 E-value=21 Score=12.50 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=8.4
Q ss_pred HHHHHhhccCC
Q psy10283 31 DDVRKIFAPFG 41 (59)
Q Consensus 31 ~~l~~~F~~~G 41 (59)
...+.+|..+|
T Consensus 15 kqvkklfkkwg 25 (26)
T 1ytr_A 15 KQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHcC
Confidence 56778888876
No 234
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}
Probab=33.43 E-value=8.6 Score=21.93 Aligned_cols=33 Identities=24% Similarity=0.424 Sum_probs=19.0
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccC-CCeEEEEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTV 48 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~~~v 48 (59)
...+|||++|...........-..| |+|.++.+
T Consensus 141 ~~~l~vGG~p~~~~~~~~~~~~~~F~GCi~~l~i 174 (383)
T 2jd4_A 141 ERKLYLGGLPSHYRARNIGTITHSIPACIGEIMV 174 (383)
T ss_dssp CSEEEESSCCTTCCCCSSCSCCSBCCEEEEEEEE
T ss_pred CCCeEEeccCcccccccccccCCCceEEeEEEEE
Confidence 4689999998654321111111223 88888765
No 235
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*
Probab=31.76 E-value=43 Score=17.79 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=15.4
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccC-CCeEEEEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTV 48 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~~~v 48 (59)
...+|||++|. -..| |+|.++.+
T Consensus 166 ~~~l~lGG~p~----------~~~F~GCi~~l~i 189 (220)
T 2r1b_A 166 QATIIIGGKEQ----------GQPFQGQLSGLYY 189 (220)
T ss_dssp EEEEEESSTTT----------TCCCCEEEEEEEE
T ss_pred CCcEEECCccC----------CCCCEEEEeEEEE
Confidence 44799999981 2233 77887664
No 236
>3dmc_A NTF2-like protein; structural genomics, joint center for STR genomics, JCSG, protein structure initiative, PSI-2, unknow function; 1.65A {Anabaena variabilis atcc 29413} SCOP: d.17.4.10
Probab=29.95 E-value=49 Score=15.88 Aligned_cols=16 Identities=31% Similarity=0.337 Sum_probs=12.8
Q ss_pred CCeEEEEEEeCCCCCC
Q psy10283 41 GTIEECTVLKGPDGTS 56 (59)
Q Consensus 41 G~i~~~~v~~d~~g~~ 56 (59)
|+|.+++-..|.+|||
T Consensus 118 GkI~~~r~Y~d~~~~~ 133 (134)
T 3dmc_A 118 DKICSYREYFGSDGKS 133 (134)
T ss_dssp TEEEEEEEEECSCSBC
T ss_pred CEEEEEEEEECCCCCc
Confidence 7888888888877776
No 237
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Probab=29.52 E-value=11 Score=21.68 Aligned_cols=33 Identities=15% Similarity=0.239 Sum_probs=19.3
Q ss_pred CCeEEEcCCCCCCcHHHHHHhhccC-CCeEEEEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTV 48 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~~~v 48 (59)
...+|||++|.......+...-..| |+|.++.+
T Consensus 154 ~~~l~vGG~p~~~~~~~~~~~~~~F~GCi~~l~i 187 (394)
T 1dyk_A 154 VGILYVGGLPINYTTRRIGPVTYSLDGCVRNLHM 187 (394)
T ss_dssp CSEEEESSCCTTCCCCSSCSCCSBCSEEEEEEEE
T ss_pred CCCEEEcccCCcccccccccCCCCccEeeeEEEE
Confidence 4589999998765321111111223 88888876
No 238
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Probab=27.73 E-value=56 Score=16.52 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=15.7
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccC-CCeEEEEE
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTV 48 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~~~v 48 (59)
..+|+|++|.. ..| |+|.++.+
T Consensus 131 ~~lylGG~p~~----------~~F~GCi~~v~i 153 (178)
T 3bod_A 131 ATIIIGGKEQG----------QPFQGQLSGLYY 153 (178)
T ss_dssp EEEEESCCTTS----------CBCCEEEEEEEE
T ss_pred CcEEEecccCC----------CCCEEEEEEEEE
Confidence 46999999861 333 88888765
No 239
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=26.60 E-value=40 Score=16.70 Aligned_cols=20 Identities=25% Similarity=0.411 Sum_probs=16.8
Q ss_pred cCCCCCCcHHHHHHhhccCC
Q psy10283 22 GMLSKQQNEDDVRKIFAPFG 41 (59)
Q Consensus 22 ~~L~~~~~~~~l~~~F~~~G 41 (59)
|.|...++++.|.++++...
T Consensus 80 Gqi~~kItee~Lk~lL~~i~ 99 (118)
T 2cru_A 80 GQLSEKVSEQGLIEILKKVS 99 (118)
T ss_dssp TCCCSCBCHHHHHHHHHHHT
T ss_pred CCCCCCcCHHHHHHHHHHHH
Confidence 67888999999999987653
No 240
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A
Probab=26.24 E-value=43 Score=19.39 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=16.3
Q ss_pred CCCCCCcHHHHHHhhccCCC
Q psy10283 23 MLSKQQNEDDVRKIFAPFGT 42 (59)
Q Consensus 23 ~L~~~~~~~~l~~~F~~~G~ 42 (59)
.||...+...+..++..||+
T Consensus 195 ~LP~~y~~~~y~~fI~~yGT 214 (367)
T 2rd7_A 195 ELPDQYNYGMYAKFINDYGT 214 (367)
T ss_dssp TSCSSCCHHHHHHHHHHHCS
T ss_pred hCcccCCHHHHHHHHHHcCc
Confidence 56777777788889999987
No 241
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=26.14 E-value=37 Score=12.78 Aligned_cols=12 Identities=17% Similarity=0.282 Sum_probs=8.0
Q ss_pred CCCCeEEEcCCC
Q psy10283 14 PPDKKLFVGMLS 25 (59)
Q Consensus 14 ~~~~~l~v~~L~ 25 (59)
...+++|||+-|
T Consensus 3 gqvrtiwvggtp 14 (36)
T 2ki0_A 3 GQVRTIWVGGTP 14 (36)
T ss_dssp CSCCCCCBCCCH
T ss_pred ceeEEEEecCCH
Confidence 355778888644
No 242
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*
Probab=26.09 E-value=68 Score=17.15 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=15.4
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccC-CCeEEEEE
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTV 48 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~-G~i~~~~v 48 (59)
..+|||++|.. ..| |+|.++.+
T Consensus 165 ~~lylGG~p~~----------~~F~GCi~~v~i 187 (226)
T 2r1d_A 165 ATIIIGGKEQG----------QPFQGQLSGLYY 187 (226)
T ss_dssp EEEEESSTTTT----------CCCCEEEEEEEE
T ss_pred CeEEEccccCC----------CCCeEEEeeEEE
Confidence 47999999852 333 77887665
No 243
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A
Probab=24.61 E-value=30 Score=17.97 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=19.4
Q ss_pred CCeEEEcCCCCCCcHHHHHH-hhccC-CCeEEEEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVRK-IFAPF-GTIEECTV 48 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~~-~F~~~-G~i~~~~v 48 (59)
...+|||++|.......+.. ....| |+|.++++
T Consensus 147 ~~~lylGG~p~~~~~~~~~~~~~~~F~GCi~~l~i 181 (204)
T 1pz7_A 147 DGALWLGGMERLSVAHKLPKAYSTGFIGCIRDVIV 181 (204)
T ss_dssp CCEEEESSCSCCSTTTTSCGGGGSBCEEEEEEEEE
T ss_pred CCCEEEecCCCcccccccccccCCCceEEEEEEEE
Confidence 35799999987543211111 12234 88888775
No 244
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=23.39 E-value=21 Score=19.37 Aligned_cols=22 Identities=18% Similarity=0.398 Sum_probs=17.6
Q ss_pred CCCCcHHHHHHhhccCCCeEEE
Q psy10283 25 SKQQNEDDVRKIFAPFGTIEEC 46 (59)
Q Consensus 25 ~~~~~~~~l~~~F~~~G~i~~~ 46 (59)
|.....+.++.+|+.||.++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~ 277 (289)
T 2afh_E 256 PNPITMDELEELLMEFGIMEVE 277 (289)
T ss_dssp CCCCCHHHHHHHHHHTTSSCCC
T ss_pred CCCCCHHHHHHHHHHhCceeee
Confidence 5667889999999999976543
No 245
>2jxn_A Uncharacterized protein YMR074C; YMR074CP, PDCD5-like protein, phosphoprotein, unknown functi; HET: MTN; NMR {Saccharomyces cerevisiae}
Probab=22.44 E-value=53 Score=16.45 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=15.6
Q ss_pred cCCCCCCcHHHHHHhhccC
Q psy10283 22 GMLSKQQNEDDVRKIFAPF 40 (59)
Q Consensus 22 ~~L~~~~~~~~l~~~F~~~ 40 (59)
|.|...++++.|..+++..
T Consensus 83 Gql~~kVsE~~Lk~iL~~v 101 (127)
T 2jxn_A 83 NNVTHKITEAEIVSILNGI 101 (127)
T ss_dssp SCCCSCBCHHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHHH
Confidence 6788899999999888543
No 246
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A
Probab=21.93 E-value=25 Score=18.12 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=19.1
Q ss_pred CCeEEEcCCCCCCcHHHHH-HhhccC-CCeEEEEE
Q psy10283 16 DKKLFVGMLSKQQNEDDVR-KIFAPF-GTIEECTV 48 (59)
Q Consensus 16 ~~~l~v~~L~~~~~~~~l~-~~F~~~-G~i~~~~v 48 (59)
...+|||++|.......+. .....| |+|.++++
T Consensus 134 ~~~lylGG~p~~~~~~~~~~~~~~~F~GCi~~l~i 168 (191)
T 3v64_A 134 DGALWLGGLQKLPVGQALPKAYGTGFVGCLRDVVV 168 (191)
T ss_dssp CSEEEESCCSSCCSSCCSCGGGTSBCEEEEEEEEE
T ss_pred CCceEEcccCcccccccccccccCCceEEeeEEEE
Confidence 3579999998754221111 112234 88888775
No 247
>2hvu_A PDCD5-like protein; YMR074CP, solution structure, unknown function; NMR {Saccharomyces cerevisiae} PDB: 2jxn_A*
Probab=21.90 E-value=54 Score=16.19 Aligned_cols=18 Identities=11% Similarity=0.252 Sum_probs=14.9
Q ss_pred cCCCCCCcHHHHHHhhcc
Q psy10283 22 GMLSKQQNEDDVRKIFAP 39 (59)
Q Consensus 22 ~~L~~~~~~~~l~~~F~~ 39 (59)
|.|...++++.|..++..
T Consensus 83 Gql~~ki~e~~L~~lL~~ 100 (116)
T 2hvu_A 83 NNVTHKITEAEIVSILNG 100 (116)
T ss_dssp SCCSSCBCHHHHHHHHHH
T ss_pred CCCCCCcCHHHHHHHHHH
Confidence 678888999999888764
No 248
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=20.72 E-value=91 Score=15.99 Aligned_cols=36 Identities=14% Similarity=0.200 Sum_probs=15.4
Q ss_pred CeEEEcCCCCCCcHHHHHHhhccCCCeEEEEEEeCCCC
Q psy10283 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 54 (59)
Q Consensus 17 ~~l~v~~L~~~~~~~~l~~~F~~~G~i~~~~v~~d~~g 54 (59)
.++|.+|...... ..|.++++.+--+..+ ++.|++|
T Consensus 13 ~~~~~~~m~~~Lq-~~L~~ll~rv~Gl~aI-~ItDrDG 48 (143)
T 3cpt_A 13 ENLYFQGSADDLK-RFLYKKLPSVEGLHAI-VVSDRDG 48 (143)
T ss_dssp ---------CHHH-HHHHHHGGGSTTEEEE-EEECTTS
T ss_pred hhhhhhhhHHHHH-HHHHHHHhccCCeEEE-EEECCCC
Confidence 3577776544332 2355667777656655 5677665
Done!