RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10283
(59 letters)
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 40.3 bits (94), Expect = 5e-07
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
K+ V + Q N+ ++R++F+ FG ++ + K GT
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGA 49
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 40.2 bits (94), Expect = 5e-07
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 12 PLPPDKKLFVGMLSKQQ-NEDDVRKIFAPFGTIEECTVLKG 51
P + ++F+G L+ + DV IF+ +G I C+V KG
Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKG 51
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 40.0 bits (93), Expect = 8e-07
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
P + ++ G ++ + +R+ F+PFG I E V
Sbjct: 16 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 52
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 40.4 bits (93), Expect = 1e-06
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+KLF+G LS + ++ +R F +GT+ +C
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDC 36
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 38.4 bits (89), Expect = 3e-06
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
L+VG L E + + F+P G I V +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCR 34
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 38.0 bits (88), Expect = 3e-06
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KL V L ++ D++++FA FGT+++ V
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 34
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 38.0 bits (88), Expect = 4e-06
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
D L+V L + +D + IF +G+I +
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQK 36
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 37.3 bits (86), Expect = 6e-06
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+ L V L + + ++ +F G I C
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTC 32
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 36.9 bits (85), Expect = 1e-05
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
D L+V L K + ++ ++F+ +G I
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITS 36
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 36.6 bits (84), Expect = 1e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
P+ L V LS E D+R++F+ +G I +
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADV 39
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 35.7 bits (82), Expect = 2e-05
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
K+F+G LS Q ++ +R+ F FG ++EC
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKEC 30
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 35.8 bits (82), Expect = 2e-05
Identities = 10/41 (24%), Positives = 20/41 (48%)
Query: 19 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59
LF+ L+ E+ ++ +F+ G I+ CT+ K +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLL 41
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 35.3 bits (81), Expect = 3e-05
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
K+FVG LS E+ +R+ F FG +E
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESI 29
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 35.5 bits (81), Expect = 4e-05
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSKE 58
++L+VG + E+ + F + T G + +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQ 43
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 35.4 bits (81), Expect = 4e-05
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
D ++VG L ++ +E + ++F G +
Sbjct: 7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNT 39
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 34.7 bits (79), Expect = 6e-05
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 19 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
+F+G L + +E + F+ FG I + + T
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN 39
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 34.5 bits (79), Expect = 1e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
L L+VG LS E+ + ++F+ G I++
Sbjct: 4 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKI 37
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 34.3 bits (78), Expect = 1e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
KL++G LS DD+R++F VL
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL 35
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 33.9 bits (77), Expect = 2e-04
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 57
+KLF+G LS + ++ +R F +GT+ +C V++ P+ S+
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 48
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 33.6 bits (76), Expect = 2e-04
Identities = 2/31 (6%), Positives = 10/31 (32%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+ L++ + ++R + +
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALS 31
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 33.8 bits (77), Expect = 3e-04
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
P ++ L++ L + +++ IF +G I +
Sbjct: 3 PPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQI 37
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 33.1 bits (75), Expect = 3e-04
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+ L+VG L+++ ++ + F PFG I +
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDI 35
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 33.0 bits (75), Expect = 3e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+LFVG L E+++RK+F +G E
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEV 38
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 33.5 bits (76), Expect = 3e-04
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
K+L V + + + D+R++F FG I +
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV 41
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 33.2 bits (75), Expect = 3e-04
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 52
+ ++V L+ DD+ F G ++ P
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQP 44
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 32.6 bits (74), Expect = 4e-04
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53
K+F+G LS + D++ F+ FG + +CT+ P
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 36
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 32.7 bits (74), Expect = 5e-04
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+ L+VG LS+ E + ++F+ G + C
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSC 38
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 32.4 bits (73), Expect = 5e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
K+FVG LS +DV+ F FG +++
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDA 29
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 32.3 bits (73), Expect = 6e-04
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 54
+F+ L K + + F+ FG I C V+ +G
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 46
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 32.4 bits (73), Expect = 6e-04
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 7/38 (18%)
Query: 9 NCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
NC +LF+G + K + +++ + A
Sbjct: 1 NC-------RLFIGGIPKMKKREEILEEIAKVTEGVLD 31
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 32.5 bits (73), Expect = 6e-04
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53
F G L Q +D+ +F+ G I+ ++G
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK 48
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 32.3 bits (73), Expect = 7e-04
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
D +++VG L D+ +F +G I +
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDI 44
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 32.0 bits (72), Expect = 8e-04
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 13 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
PP L + + +E+D++ +F+ G + +
Sbjct: 7 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 40
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 32.3 bits (73), Expect = 8e-04
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+ +F L+ + D+ F+ G + +
Sbjct: 19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDV 48
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.1 bits (72), Expect = 8e-04
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 9 NCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+ P P+K L++ LS + E D+ +FA F +
Sbjct: 11 SYNPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGP 48
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 32.0 bits (72), Expect = 9e-04
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
P +L+VG L + + + F FG+I
Sbjct: 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 47
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.9 bits (72), Expect = 0.001
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 57
+ + + E+ ++ +G +EE V
Sbjct: 28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLV 68
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 31.6 bits (71), Expect = 0.001
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
P LF+ L ++ + D+ ++F PFG +
Sbjct: 16 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSA 48
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear
ribonucleoproteins A2/B1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 103
Score = 31.6 bits (71), Expect = 0.001
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 54
+KLF+G LS + E+ +R + +G + +C V++ P
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPAS 58
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 31.6 bits (71), Expect = 0.001
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGT 55
+ L LS ED+++++F I + G
Sbjct: 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGI 55
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.2 bits (70), Expect = 0.002
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 48
P P F+G L E+ +++ F
Sbjct: 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLP 47
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 30.8 bits (69), Expect = 0.003
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+LFV LS +E+D+ K+F+ +G + E
Sbjct: 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSEL 38
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 30.4 bits (68), Expect = 0.003
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+FVG + ED++R+ F+ +G + +
Sbjct: 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDV 35
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 30.5 bits (68), Expect = 0.003
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
L V L + +++ R +F G IE C
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESC 32
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 30.3 bits (68), Expect = 0.003
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
L V L + E D+++ F+ FG +
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMV 38
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 30.1 bits (67), Expect = 0.005
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
KK+FVG + + E +R F +G IE
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 32
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 30.0 bits (67), Expect = 0.005
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 18 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
KLF+G L N+D V+++ FG ++
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAF 31
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 29.2 bits (65), Expect = 0.009
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+ + V LS+ E D++++F PFG+I
Sbjct: 6 DDNATIRVTNLSEDTRETDLQELFRPFGSISRI 38
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 28.8 bits (64), Expect = 0.012
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 50
K L+V L +E+ + K F V K
Sbjct: 9 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK 42
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 28.9 bits (64), Expect = 0.014
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 11 TPLPPDKKLFVGM--LSKQQNEDDVRKIFAPFGTIEEC 46
T + L V L + + + + G ++
Sbjct: 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL 50
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 29.0 bits (64), Expect = 0.015
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 48
+ V L + E D+ + FGTI +
Sbjct: 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM 47
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 28.8 bits (64), Expect = 0.018
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 48
P ++ V L D + +IF+ FGT+ +
Sbjct: 6 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIIT 39
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 28.3 bits (62), Expect = 0.018
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
PP++ LF+ L ++ NE + +F F +E
Sbjct: 6 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEV 38
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 28.5 bits (63), Expect = 0.019
Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 15 PDKKLFVGMLSKQQN-EDDVRKIFAPFGTIEEC 46
+ + + + +N + ++ PFG I
Sbjct: 7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNH 39
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 27.8 bits (61), Expect = 0.030
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 19 LFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
LFV + ++ ED++++ F +G I+
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNI 37
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 27.8 bits (61), Expect = 0.031
Identities = 3/41 (7%), Positives = 14/41 (34%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 56
++ +++ DD+++ G + + +
Sbjct: 6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAF 46
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 27.9 bits (61), Expect = 0.032
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 13 LPPD----KKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
LP D K +F+ LS E+ + ++ FG ++
Sbjct: 1 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYV 38
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 27.7 bits (61), Expect = 0.034
Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 15 PDKKLFVGMLSKQQNEDDVRK----IFAPFGTIEECTV 48
P+ +++ L+++ +D+++K IF+ FG I + V
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV 39
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.0 bits (59), Expect = 0.072
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 53
K+FVG L + +RK F FG IEE V+
Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ 47
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 27.2 bits (59), Expect = 0.074
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 8 WNCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+ L V + +E +R++F +G IE
Sbjct: 34 QMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESV 72
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 26.2 bits (57), Expect = 0.13
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL-KGPDGTSK 57
P + V + + D++ F + I L G
Sbjct: 7 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPT 51
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 26.3 bits (57), Expect = 0.14
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
D ++ V L + D++ G +
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYA 45
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 25.9 bits (56), Expect = 0.17
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIF 37
+ KLFVG LS NE + ++F
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVF 26
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.9 bits (56), Expect = 0.19
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 17 KKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
+ V L + N +V + +
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCY 35
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 24.7 bits (53), Expect = 0.47
Identities = 11/44 (25%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 17 KKLFVGMLSKQ-QNEDDVRKIFAPFGTIEECTVLKGPDGTSKER 59
+++ + LS + +E+ +R+ F FG+IE+ + G S
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNN 48
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 24.0 bits (51), Expect = 0.93
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 19 LFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
L++ L + D+ K+ P+G I
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVST 28
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 24.0 bits (51), Expect = 0.98
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 14 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 46
P + L + L + E +V + PFG +
Sbjct: 6 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNI 38
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 24.0 bits (51), Expect = 1.2
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 18 KLFVGMLSKQQNEDDVRKIF 37
L++ L +E ++ +
Sbjct: 20 NLYISNLPLSMDEQELENML 39
>d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 84
Score = 23.5 bits (51), Expect = 1.2
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAP 39
+ LFV M SK+ + + R I P
Sbjct: 40 NSGLFVAMPSKRTPDGEFRDIAHP 63
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 23.9 bits (51), Expect = 1.2
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 17 KKLFVGMLSKQQNEDDVRKIF 37
+ +FVG + + E+ ++ IF
Sbjct: 9 RSVFVGNIPYEATEEQLKDIF 29
>d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG
{Bacillus subtilis [TaxId: 1423]}
Length = 92
Score = 23.1 bits (50), Expect = 1.7
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 16 DKKLFVGMLSKQQNEDDVRKIFAP 39
+ LFV M SK+ + + R I P
Sbjct: 40 NNGLFVAMPSKRTPDGEFRDITHP 63
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 153
Score = 23.0 bits (49), Expect = 2.7
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 11 TPLPPDKKLFVGM---LSKQQNEDDVRKI 36
PLP +K LF+G L+ D +
Sbjct: 7 GPLPLNKTLFLGYAFLLTMATTSDKLASR 35
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli
[TaxId: 562]}
Length = 101
Score = 22.8 bits (49), Expect = 2.9
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 15 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE 45
+ FV +L D + T +E
Sbjct: 10 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDE 40
>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens)
[TaxId: 9606]}
Length = 80
Score = 22.1 bits (47), Expect = 3.9
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 35 KIFAPFGTIEECTVLKGPDGT 55
++ P G + DGT
Sbjct: 20 EVRMPSGKTARPNITDNKDGT 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.141 0.442
Gapped
Lambda K H
0.267 0.0553 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 230,940
Number of extensions: 7905
Number of successful extensions: 94
Number of sequences better than 10.0: 1
Number of HSP's gapped: 94
Number of HSP's successfully gapped: 74
Length of query: 59
Length of database: 2,407,596
Length adjustment: 29
Effective length of query: 30
Effective length of database: 2,009,426
Effective search space: 60282780
Effective search space used: 60282780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.3 bits)