Query psy10284
Match_columns 103
No_of_seqs 166 out of 1838
Neff 7.8
Searched_HMMs 46136
Date Fri Aug 16 22:29:55 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10284.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10284hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0149|consensus 99.1 5.6E-11 1.2E-15 84.4 4.2 41 63-103 13-54 (247)
2 PLN03134 glycine-rich RNA-bind 99.0 1.6E-09 3.5E-14 72.3 5.8 44 60-103 32-76 (144)
3 KOG0148|consensus 98.9 2.1E-09 4.6E-14 78.1 5.4 73 24-99 111-201 (321)
4 KOG0126|consensus 98.9 4.8E-10 1E-14 77.4 1.1 42 62-103 35-77 (219)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.8 8.7E-09 1.9E-13 76.2 5.9 41 63-103 4-45 (352)
6 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.7 1.9E-08 4.1E-13 74.4 5.7 42 62-103 269-311 (352)
7 TIGR01659 sex-lethal sex-letha 98.7 3.8E-08 8.3E-13 74.0 6.6 43 61-103 192-235 (346)
8 TIGR01659 sex-lethal sex-letha 98.7 3.5E-08 7.5E-13 74.3 6.3 44 60-103 105-149 (346)
9 KOG0144|consensus 98.7 6.6E-09 1.4E-13 79.4 2.2 43 61-103 123-165 (510)
10 TIGR01628 PABP-1234 polyadenyl 98.7 4.1E-08 8.8E-13 77.2 6.5 77 16-103 250-326 (562)
11 PF00076 RRM_1: RNA recognitio 98.7 2.1E-08 4.5E-13 57.5 3.5 36 65-100 1-36 (70)
12 TIGR01648 hnRNP-R-Q heterogene 98.7 4.5E-08 9.9E-13 77.8 6.0 47 57-103 53-99 (578)
13 KOG0144|consensus 98.6 3.1E-08 6.7E-13 75.8 3.6 47 57-103 29-76 (510)
14 TIGR01628 PABP-1234 polyadenyl 98.6 1.2E-07 2.5E-12 74.7 6.6 67 12-102 152-218 (562)
15 KOG4205|consensus 98.6 6.3E-08 1.4E-12 71.9 4.7 43 61-103 5-48 (311)
16 PLN03120 nucleic acid binding 98.5 1.3E-07 2.8E-12 68.6 5.0 37 63-99 5-41 (260)
17 TIGR01645 half-pint poly-U bin 98.5 2.1E-07 4.5E-12 74.5 6.6 42 62-103 204-246 (612)
18 KOG0148|consensus 98.5 1.7E-07 3.7E-12 68.3 5.4 88 16-103 6-104 (321)
19 PF14259 RRM_6: RNA recognitio 98.5 1.7E-07 3.7E-12 54.3 4.4 37 65-101 1-37 (70)
20 TIGR01645 half-pint poly-U bin 98.5 1.9E-07 4E-12 74.7 5.5 43 61-103 106-149 (612)
21 PLN03121 nucleic acid binding 98.5 2.6E-07 5.5E-12 66.4 5.4 38 62-99 5-42 (243)
22 TIGR01622 SF-CC1 splicing fact 98.5 6.5E-07 1.4E-11 68.6 7.5 42 62-103 186-228 (457)
23 KOG0145|consensus 98.5 5E-08 1.1E-12 70.9 1.3 60 44-103 107-169 (360)
24 TIGR01622 SF-CC1 splicing fact 98.4 7.4E-07 1.6E-11 68.3 5.9 43 61-103 88-131 (457)
25 KOG0113|consensus 98.4 7.7E-07 1.7E-11 65.5 5.3 41 63-103 102-143 (335)
26 COG0724 RNA-binding proteins ( 98.4 7.7E-07 1.7E-11 61.4 5.1 42 62-103 115-157 (306)
27 KOG0117|consensus 98.4 6.5E-07 1.4E-11 68.9 5.0 50 54-103 75-125 (506)
28 KOG0109|consensus 98.3 2.9E-07 6.2E-12 67.7 2.7 36 63-98 3-38 (346)
29 KOG0121|consensus 98.3 3.6E-07 7.7E-12 60.2 2.9 39 61-99 35-73 (153)
30 TIGR01642 U2AF_lg U2 snRNP aux 98.3 1.3E-06 2.7E-11 67.8 6.0 43 61-103 294-337 (509)
31 PLN03213 repressor of silencin 98.3 9.4E-07 2E-11 69.1 5.2 38 61-98 9-46 (759)
32 KOG0122|consensus 98.2 1.7E-06 3.7E-11 62.2 4.6 43 61-103 188-231 (270)
33 KOG0125|consensus 98.2 1.6E-06 3.4E-11 64.6 4.3 42 59-100 93-134 (376)
34 KOG0107|consensus 98.2 1.9E-06 4E-11 59.4 4.4 39 62-100 10-48 (195)
35 KOG4205|consensus 98.2 2.9E-06 6.3E-11 63.1 5.5 42 62-103 97-139 (311)
36 KOG0147|consensus 98.2 1.5E-06 3.3E-11 68.0 3.7 83 6-103 237-320 (549)
37 smart00362 RRM_2 RNA recogniti 98.2 4.4E-06 9.5E-11 46.9 4.6 35 64-98 1-35 (72)
38 KOG0146|consensus 98.2 1.7E-06 3.7E-11 63.2 3.4 44 60-103 17-60 (371)
39 KOG0127|consensus 98.2 3.6E-06 7.9E-11 66.3 5.2 43 61-103 291-334 (678)
40 KOG0124|consensus 98.1 2.5E-06 5.4E-11 64.7 3.2 81 2-103 164-252 (544)
41 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.1 4.8E-06 1.1E-10 64.8 4.6 37 63-99 3-39 (481)
42 KOG0109|consensus 98.1 3.8E-06 8.3E-11 61.8 3.5 64 32-98 51-114 (346)
43 TIGR01649 hnRNP-L_PTB hnRNP-L/ 98.1 8.1E-06 1.8E-10 63.6 5.6 39 61-99 274-313 (481)
44 KOG0114|consensus 98.0 1E-05 2.2E-10 51.6 4.6 42 58-99 14-55 (124)
45 KOG0123|consensus 98.0 9.8E-06 2.1E-10 61.6 5.2 72 11-103 137-208 (369)
46 KOG0145|consensus 98.0 1.1E-05 2.4E-10 58.9 4.6 43 60-102 39-82 (360)
47 smart00360 RRM RNA recognition 97.9 1.3E-05 2.9E-10 44.6 3.7 36 67-102 1-37 (71)
48 cd00590 RRM RRM (RNA recogniti 97.9 2.7E-05 5.8E-10 43.8 4.8 36 64-99 1-36 (74)
49 TIGR01648 hnRNP-R-Q heterogene 97.9 2.3E-05 5E-10 62.6 5.9 37 61-97 232-270 (578)
50 KOG0123|consensus 97.8 2.7E-05 5.9E-10 59.2 4.4 69 26-100 46-114 (369)
51 KOG0105|consensus 97.8 2.3E-05 5E-10 54.7 3.3 35 61-95 5-39 (241)
52 KOG0108|consensus 97.8 3.2E-05 6.8E-10 60.0 4.1 41 63-103 19-60 (435)
53 KOG4207|consensus 97.7 4.2E-05 9.1E-10 54.2 3.4 43 61-103 12-55 (256)
54 KOG0117|consensus 97.6 6.9E-05 1.5E-09 58.0 3.7 38 61-98 258-295 (506)
55 KOG0146|consensus 97.6 0.0001 2.3E-09 54.1 4.2 45 59-103 282-327 (371)
56 KOG0131|consensus 97.5 7.5E-05 1.6E-09 51.8 3.0 43 61-103 95-139 (203)
57 KOG0533|consensus 97.5 0.00017 3.6E-09 52.2 3.9 42 61-102 82-123 (243)
58 KOG0415|consensus 97.4 0.00013 2.8E-09 55.3 3.5 42 61-102 238-280 (479)
59 KOG0124|consensus 97.4 6.8E-05 1.5E-09 57.1 2.0 43 61-103 112-155 (544)
60 KOG0131|consensus 97.4 0.00015 3.2E-09 50.4 2.7 39 61-99 8-46 (203)
61 KOG0111|consensus 97.2 0.00015 3.3E-09 51.9 1.6 41 63-103 11-52 (298)
62 KOG0130|consensus 97.1 0.00062 1.3E-08 45.5 3.2 40 63-102 73-113 (170)
63 KOG1548|consensus 97.1 0.0012 2.6E-08 49.8 5.1 44 59-102 131-182 (382)
64 KOG0127|consensus 97.0 0.00094 2E-08 53.1 4.4 41 63-103 6-47 (678)
65 KOG0132|consensus 96.9 0.00072 1.6E-08 55.4 2.9 38 61-98 420-457 (894)
66 KOG4212|consensus 96.9 0.0014 3E-08 51.0 4.4 43 61-103 43-86 (608)
67 TIGR01642 U2AF_lg U2 snRNP aux 96.9 0.0016 3.4E-08 50.6 4.7 27 60-86 173-199 (509)
68 KOG0153|consensus 96.7 0.0024 5.1E-08 48.2 4.1 38 61-98 227-264 (377)
69 KOG0116|consensus 96.4 0.003 6.5E-08 48.9 3.2 34 63-96 289-322 (419)
70 KOG4206|consensus 96.4 0.0061 1.3E-07 43.4 4.5 36 63-98 10-49 (221)
71 KOG0151|consensus 96.4 0.0038 8.3E-08 51.0 3.7 39 60-98 172-210 (877)
72 KOG4212|consensus 96.3 0.003 6.6E-08 49.2 2.6 36 60-95 534-569 (608)
73 KOG4209|consensus 96.2 0.0045 9.8E-08 44.4 2.9 44 60-103 99-143 (231)
74 KOG4454|consensus 96.1 0.0021 4.6E-08 46.0 0.8 41 62-102 9-49 (267)
75 KOG0110|consensus 95.8 0.0062 1.3E-07 49.5 2.4 37 61-97 612-648 (725)
76 KOG0106|consensus 95.5 0.012 2.6E-07 41.9 2.6 32 63-94 2-33 (216)
77 KOG0129|consensus 95.5 0.041 9E-07 43.5 5.7 43 57-99 365-408 (520)
78 KOG3152|consensus 95.5 0.018 4E-07 41.9 3.5 38 61-98 73-110 (278)
79 KOG0226|consensus 95.4 0.017 3.6E-07 42.2 3.1 43 61-103 189-232 (290)
80 KOG0129|consensus 95.4 0.012 2.6E-07 46.4 2.5 30 61-90 258-287 (520)
81 KOG4661|consensus 95.3 0.014 3.1E-07 47.0 2.7 39 61-99 404-442 (940)
82 KOG4660|consensus 95.2 0.014 2.9E-07 46.4 2.4 40 61-100 74-113 (549)
83 KOG4208|consensus 94.6 0.072 1.6E-06 37.7 4.4 44 60-103 47-92 (214)
84 KOG4210|consensus 94.2 0.053 1.1E-06 40.1 3.2 42 61-102 183-226 (285)
85 PF13893 RRM_5: RNA recognitio 94.0 0.066 1.4E-06 29.3 2.6 20 79-98 1-20 (56)
86 KOG1190|consensus 93.6 0.096 2.1E-06 40.7 3.7 38 61-98 27-64 (492)
87 KOG4849|consensus 93.5 0.027 5.9E-07 43.0 0.5 44 60-103 78-124 (498)
88 PF08777 RRM_3: RNA binding mo 93.3 0.12 2.6E-06 32.6 3.2 36 63-98 2-37 (105)
89 KOG0110|consensus 92.8 0.096 2.1E-06 42.9 2.7 39 61-99 514-552 (725)
90 KOG0115|consensus 92.6 0.12 2.7E-06 37.7 2.8 39 63-101 32-70 (275)
91 KOG0147|consensus 92.1 0.029 6.4E-07 44.5 -0.9 43 61-103 178-221 (549)
92 smart00361 RRM_1 RNA recogniti 92.1 0.22 4.8E-06 28.6 3.1 23 76-98 2-29 (70)
93 KOG1457|consensus 91.6 0.12 2.6E-06 37.4 1.8 32 63-94 211-242 (284)
94 KOG0120|consensus 91.3 0.15 3.2E-06 40.5 2.2 43 61-103 288-331 (500)
95 PF14605 Nup35_RRM_2: Nup53/35 89.8 0.41 8.9E-06 26.5 2.6 31 64-95 3-33 (53)
96 KOG0128|consensus 89.6 0.22 4.9E-06 41.6 1.9 42 62-103 736-777 (881)
97 KOG1855|consensus 89.4 0.87 1.9E-05 35.7 4.9 37 61-97 230-266 (484)
98 KOG0105|consensus 86.5 1.4 2.9E-05 31.2 4.0 39 61-99 114-152 (241)
99 KOG1995|consensus 83.9 1 2.2E-05 34.3 2.6 32 60-91 64-95 (351)
100 KOG4211|consensus 83.5 2.3 5.1E-05 33.8 4.5 34 63-97 11-44 (510)
101 KOG4211|consensus 82.2 4 8.7E-05 32.5 5.3 41 62-102 103-144 (510)
102 KOG4206|consensus 81.3 3.5 7.5E-05 29.6 4.3 40 59-98 143-182 (221)
103 KOG4454|consensus 80.6 0.45 9.7E-06 34.4 -0.3 40 63-102 81-124 (267)
104 PF08675 RNA_bind: RNA binding 80.6 4.3 9.4E-05 24.9 4.0 29 63-91 9-37 (87)
105 KOG1190|consensus 80.5 2.8 6.1E-05 32.9 3.9 38 62-99 297-335 (492)
106 KOG1457|consensus 80.0 3.7 8E-05 29.9 4.1 34 62-95 34-67 (284)
107 KOG4676|consensus 79.0 1.9 4.1E-05 33.6 2.6 35 63-97 8-42 (479)
108 KOG0112|consensus 78.1 0.76 1.6E-05 38.9 0.2 37 61-97 371-407 (975)
109 COG5175 MOT2 Transcriptional r 74.3 3 6.5E-05 32.1 2.5 33 64-96 116-154 (480)
110 PF15513 DUF4651: Domain of un 71.1 4.9 0.00011 23.2 2.3 18 77-94 9-26 (62)
111 PF04059 RRM_2: RNA recognitio 68.6 13 0.00029 23.1 4.2 37 63-99 2-40 (97)
112 KOG0106|consensus 65.9 4.1 8.8E-05 29.1 1.6 33 60-92 97-129 (216)
113 KOG2891|consensus 63.9 5.8 0.00012 29.9 2.1 40 57-96 144-195 (445)
114 PF11608 Limkain-b1: Limkain b 61.5 10 0.00022 23.4 2.6 30 63-92 3-37 (90)
115 KOG1456|consensus 59.1 22 0.00048 27.8 4.5 41 60-100 285-326 (494)
116 PF10567 Nab6_mRNP_bdg: RNA-re 58.5 7.1 0.00015 29.3 1.8 37 62-98 15-51 (309)
117 PF05172 Nup35_RRM: Nup53/35/4 54.4 14 0.00031 23.1 2.4 30 63-93 7-36 (100)
118 PF03467 Smg4_UPF3: Smg-4/UPF3 53.2 6.6 0.00014 26.9 0.9 28 62-89 7-35 (176)
119 COG0030 KsgA Dimethyladenosine 50.1 32 0.0007 25.2 4.0 35 63-97 96-130 (259)
120 KOG0128|consensus 48.9 1 2.3E-05 37.9 -4.2 35 61-95 666-700 (881)
121 PF00054 Laminin_G_1: Laminin 48.7 5.8 0.00013 25.3 -0.0 32 63-94 93-125 (131)
122 PF11411 DNA_ligase_IV: DNA li 44.0 15 0.00032 18.9 1.1 17 72-88 19-35 (36)
123 KOG1456|consensus 42.5 53 0.0012 25.8 4.3 36 61-96 30-65 (494)
124 COG0724 RNA-binding proteins ( 39.7 55 0.0012 21.9 3.8 41 58-98 221-261 (306)
125 KOG2193|consensus 38.6 22 0.00047 28.3 1.7 24 63-86 2-25 (584)
126 KOG0112|consensus 37.1 37 0.00081 29.3 3.0 35 60-94 453-487 (975)
127 KOG4008|consensus 36.5 25 0.00054 25.7 1.7 31 62-92 40-70 (261)
128 PF07292 NID: Nmi/IFP 35 domai 36.3 26 0.00056 21.5 1.5 24 61-84 51-74 (88)
129 KOG2135|consensus 35.5 17 0.00036 29.1 0.7 34 64-97 374-408 (526)
130 KOG2068|consensus 35.4 22 0.00048 27.0 1.3 36 63-98 78-116 (327)
131 KOG4307|consensus 34.5 41 0.00088 28.5 2.7 40 58-97 430-470 (944)
132 KOG2314|consensus 33.2 1.1E+02 0.0023 25.4 4.9 43 60-102 56-104 (698)
133 cd00027 BRCT Breast Cancer Sup 32.7 67 0.0015 16.7 2.8 26 63-88 2-27 (72)
134 COG5584 Predicted small secret 32.6 51 0.0011 20.8 2.4 31 69-99 29-59 (103)
135 KOG1271|consensus 31.0 84 0.0018 22.5 3.5 23 73-95 183-205 (227)
136 PF12623 Hen1_L: RNA repair, l 28.4 1.3E+02 0.0027 22.0 4.1 36 63-98 119-155 (245)
137 PHA01632 hypothetical protein 28.1 62 0.0013 18.3 2.0 22 63-84 15-38 (64)
138 PRK00274 ksgA 16S ribosomal RN 27.7 1E+02 0.0022 22.2 3.7 34 64-97 107-140 (272)
139 PF02210 Laminin_G_2: Laminin 27.1 26 0.00057 21.2 0.5 31 63-94 94-125 (128)
140 PTZ00338 dimethyladenosine tra 25.5 1E+02 0.0022 22.8 3.4 34 64-97 103-136 (294)
141 PF00398 RrnaAD: Ribosomal RNA 24.6 56 0.0012 23.4 1.9 31 62-92 97-129 (262)
142 KOG2253|consensus 24.4 55 0.0012 27.3 1.9 36 59-94 37-72 (668)
143 PF15407 Spo7_2_N: Sporulation 24.2 51 0.0011 19.1 1.3 17 62-78 27-43 (67)
144 PF15063 TC1: Thyroid cancer p 22.8 42 0.00091 20.2 0.7 27 62-88 25-51 (79)
145 COG4009 Uncharacterized protei 22.4 83 0.0018 19.1 2.0 26 63-88 49-74 (88)
146 KOG2591|consensus 21.3 3.1E+02 0.0067 22.9 5.4 41 57-97 170-212 (684)
147 KOG1365|consensus 20.9 1.5E+02 0.0033 23.5 3.6 41 62-102 280-323 (508)
148 smart00650 rADc Ribosomal RNA 20.4 1.5E+02 0.0032 19.4 3.2 34 63-96 78-111 (169)
149 PF00276 Ribosomal_L23: Riboso 20.3 1.2E+02 0.0026 18.3 2.5 33 63-95 20-54 (91)
No 1
>KOG0149|consensus
Probab=99.13 E-value=5.6e-11 Score=84.41 Aligned_cols=41 Identities=37% Similarity=0.673 Sum_probs=40.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+|||||+|+|.++.+.|+++|++||+|.++.|+.|+. |+||
T Consensus 13 TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rsk 54 (247)
T KOG0149|consen 13 TKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSK 54 (247)
T ss_pred EEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCcccc
Confidence 8999999999999999999999999999999999999 9986
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.96 E-value=1.6e-09 Score=72.27 Aligned_cols=44 Identities=32% Similarity=0.557 Sum_probs=40.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..+++|||+|||+.+++++|+++|++||.|.+|.|++|+. |++|
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k 76 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSR 76 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcc
Confidence 3458999999999999999999999999999999999987 7765
No 3
>KOG0148|consensus
Probab=98.92 E-value=2.1e-09 Score=78.06 Aligned_cols=73 Identities=21% Similarity=0.439 Sum_probs=62.5
Q ss_pred CCcccchhhhhccccccccCCCcCCCcccccccCCC------------------CCCceEEEecCCCCCCHHHHHHhhcC
Q psy10284 24 LSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPL------------------PPDKKLFVGMLSKQQNEDDVRKIFAP 85 (103)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~lfVgnL~~~~te~~l~~~F~~ 85 (103)
|.++.+.|.....++.+|+..++++ .||+.++. ++++.+||||++..+||+++++.|+.
T Consensus 111 f~~k~dAEnAI~~MnGqWlG~R~IR---TNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~ 187 (321)
T KOG0148|consen 111 FPNKEDAENAIQQMNGQWLGRRTIR---TNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSP 187 (321)
T ss_pred ccchHHHHHHHHHhCCeeeccceee---ccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhccc
Confidence 4556677888889999999998776 58876443 48899999999999999999999999
Q ss_pred CCceeEEEEeeCCC
Q psy10284 86 FGTIEECTVLKGPD 99 (103)
Q Consensus 86 ~G~i~~~~v~~d~~ 99 (103)
||.|.+|+|.+|+.
T Consensus 188 fG~I~EVRvFk~qG 201 (321)
T KOG0148|consen 188 FGPIQEVRVFKDQG 201 (321)
T ss_pred CCcceEEEEecccc
Confidence 99999999998873
No 4
>KOG0126|consensus
Probab=98.89 E-value=4.8e-10 Score=77.43 Aligned_cols=42 Identities=24% Similarity=0.538 Sum_probs=39.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+.-|||||||+..||.++-.+|++||+|.++.+++|+. |+|+
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSK 77 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSK 77 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCccc
Confidence 35699999999999999999999999999999999999 9986
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.82 E-value=8.7e-09 Score=76.22 Aligned_cols=41 Identities=27% Similarity=0.628 Sum_probs=38.9
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
.+|||+|||..+++++|+++|++||.|.+|+|++|+. |++|
T Consensus 4 ~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~ 45 (352)
T TIGR01661 4 TNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSL 45 (352)
T ss_pred cEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccc
Confidence 7899999999999999999999999999999999987 8765
No 6
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.75 E-value=1.9e-08 Score=74.42 Aligned_cols=42 Identities=24% Similarity=0.487 Sum_probs=38.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+..|||+|||+.+++++|+++|++||.|.+|+|++|+. |++|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~sk 311 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCK 311 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCcc
Confidence 44799999999999999999999999999999999996 7765
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.71 E-value=3.8e-08 Score=74.01 Aligned_cols=43 Identities=28% Similarity=0.554 Sum_probs=39.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...+|||+|||..+|+++|+++|++||.|.+|.|++|+. |++|
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~k 235 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPR 235 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccc
Confidence 457899999999999999999999999999999999987 7764
No 8
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.71 E-value=3.5e-08 Score=74.25 Aligned_cols=44 Identities=20% Similarity=0.477 Sum_probs=40.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||+++|+++|+++|+.||.|.+|+|++|+. |++|
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~sr 149 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSF 149 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccC
Confidence 4668999999999999999999999999999999999987 7764
No 9
>KOG0144|consensus
Probab=98.70 E-value=6.6e-09 Score=79.38 Aligned_cols=43 Identities=58% Similarity=1.070 Sum_probs=40.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
...|||||.|+..+||.+++++|++||.|++|+|++|.+|.||
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sR 165 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSR 165 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheeccccccc
Confidence 3689999999999999999999999999999999999998876
No 10
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.69 E-value=4.1e-08 Score=77.24 Aligned_cols=77 Identities=25% Similarity=0.420 Sum_probs=55.0
Q ss_pred CceeEEecCCcccchhhhhccccccccCCCcCCCcccccccCCCCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEe
Q psy10284 16 DKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 16 ~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
++.++|+...++.+++........ .. ...........+|||+||+..+|+++|+++|++||.|.+|+++
T Consensus 250 g~~l~v~~a~~k~er~~~~~~~~~----~~-------~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 250 GKKLYVGRAQKRAEREAELRRKFE----EL-------QQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVM 318 (562)
T ss_pred ceeeEeecccChhhhHHHHHhhHH----hh-------hhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence 888999988877666443321110 00 0000112345789999999999999999999999999999999
Q ss_pred eCCCCCCC
Q psy10284 96 KGPDGTSK 103 (103)
Q Consensus 96 ~d~~G~sr 103 (103)
.|..|++|
T Consensus 319 ~d~~g~~~ 326 (562)
T TIGR01628 319 LDEKGVSR 326 (562)
T ss_pred ECCCCCcC
Confidence 99657664
No 11
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.69 E-value=2.1e-08 Score=57.53 Aligned_cols=36 Identities=36% Similarity=0.767 Sum_probs=33.0
Q ss_pred EEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCC
Q psy10284 65 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100 (103)
Q Consensus 65 lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G 100 (103)
|||+|||..+|+++|+++|++||.|..+.++.+..|
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~ 36 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSG 36 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTS
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccc
Confidence 799999999999999999999999999999987333
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.67 E-value=4.5e-08 Score=77.82 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=41.9
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 57 TPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 57 ~~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
.+....++|||+|||++++|++|+++|++||.|.+++|++|..|++|
T Consensus 53 ~~p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sR 99 (578)
T TIGR01648 53 VQPGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNR 99 (578)
T ss_pred CCCCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCcc
Confidence 33456799999999999999999999999999999999999558775
No 13
>KOG0144|consensus
Probab=98.62 E-value=3.1e-08 Score=75.79 Aligned_cols=47 Identities=34% Similarity=0.651 Sum_probs=42.5
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 57 TPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 57 ~~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
.++....|+|||.+|+.++|.+|+++|++||.|.+|.|++|+. |.+|
T Consensus 29 ~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~ 76 (510)
T KOG0144|consen 29 NPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSK 76 (510)
T ss_pred CCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCccc
Confidence 3445668999999999999999999999999999999999998 7764
No 14
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.60 E-value=1.2e-07 Score=74.71 Aligned_cols=67 Identities=36% Similarity=0.590 Sum_probs=52.5
Q ss_pred CCCCCceeEEecCCcccchhhhhccccccccCCCcCCCcccccccCCCCCCceEEEecCCCCCCHHHHHHhhcCCCceeE
Q psy10284 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE 91 (103)
Q Consensus 12 ~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~ 91 (103)
..+++++++|+.+.++.++... .....++|||+|||.++|+++|+++|+.||.|.+
T Consensus 152 ~~~~~~~i~v~~~~~~~~~~~~------------------------~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~ 207 (562)
T TIGR01628 152 MLLNDKEVYVGRFIKKHEREAA------------------------PLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITS 207 (562)
T ss_pred cEecCceEEEeccccccccccc------------------------cccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEE
Confidence 5577888888877766555311 1112278999999999999999999999999999
Q ss_pred EEEeeCCCCCC
Q psy10284 92 CTVLKGPDGTS 102 (103)
Q Consensus 92 ~~v~~d~~G~s 102 (103)
+.+++|..|++
T Consensus 208 ~~i~~~~~g~~ 218 (562)
T TIGR01628 208 AAVMKDGSGRS 218 (562)
T ss_pred EEEEECCCCCc
Confidence 99999877655
No 15
>KOG4205|consensus
Probab=98.60 E-value=6.3e-08 Score=71.92 Aligned_cols=43 Identities=37% Similarity=0.814 Sum_probs=40.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..+++|||+|+|.++++.|+++|.+||+|.+|.+|+|+. |++|
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsr 48 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSR 48 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcc
Confidence 459999999999999999999999999999999999998 8875
No 16
>PLN03120 nucleic acid binding protein; Provisional
Probab=98.54 E-value=1.3e-07 Score=68.56 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=35.5
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
++|||||||+.+|+++|+++|+.||.|.+|.|++|+.
T Consensus 5 rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~ 41 (260)
T PLN03120 5 RTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE 41 (260)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC
Confidence 7899999999999999999999999999999999874
No 17
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.54 E-value=2.1e-07 Score=74.45 Aligned_cols=42 Identities=24% Similarity=0.602 Sum_probs=38.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
.++|||+||+.++++++|+++|+.||.|.+|+|++|+. |++|
T Consensus 204 ~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksK 246 (612)
T TIGR01645 204 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHK 246 (612)
T ss_pred cceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcC
Confidence 37899999999999999999999999999999999987 6654
No 18
>KOG0148|consensus
Probab=98.54 E-value=1.7e-07 Score=68.28 Aligned_cols=88 Identities=26% Similarity=0.442 Sum_probs=61.9
Q ss_pred CceeEEecCCcccchhhhhc---cccccccCCCcCCCcccccccCCCC-------CCceEEEecCCCCCCHHHHHHhhcC
Q psy10284 16 DKKLFVGMLSKQQNEDDNLS---HCFHLLFPHLQCFPWDLIWTCTPLP-------PDKKLFVGMLSKQQNEDDVRKIFAP 85 (103)
Q Consensus 16 ~~~~~V~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lfVgnL~~~~te~~l~~~F~~ 85 (103)
-|-+|||.+.+...++.-.. ..+...--.+-..+++++|+..|.. ....+|||.|...++.+.||+.|.+
T Consensus 6 prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~e~~v~wa~~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~p 85 (321)
T KOG0148|consen 6 PRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDELKVNWATAPGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAP 85 (321)
T ss_pred CceEEeeccChhhHHHHHHHHHHhccccccceeehhhhccccccCcccCCCCccccceeEEehhcchhcchHHHHHHhcc
Confidence 36799999998876654221 1111000011123455666554432 3457999999999999999999999
Q ss_pred CCceeEEEEeeCCC-CCCC
Q psy10284 86 FGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 86 ~G~i~~~~v~~d~~-G~sr 103 (103)
||+|.+++|++|.. ++||
T Consensus 86 FGevS~akvirD~~T~KsK 104 (321)
T KOG0148|consen 86 FGEVSDAKVIRDMNTGKSK 104 (321)
T ss_pred ccccccceEeecccCCccc
Confidence 99999999999999 8886
No 19
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.53 E-value=1.7e-07 Score=54.28 Aligned_cols=37 Identities=30% Similarity=0.716 Sum_probs=32.2
Q ss_pred EEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCC
Q psy10284 65 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGT 101 (103)
Q Consensus 65 lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~ 101 (103)
|||+|||+++++++|+++|+.||.|..+.+..++.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~ 37 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQ 37 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSS
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccc
Confidence 7999999999999999999999999999999987543
No 20
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.51 E-value=1.9e-07 Score=74.72 Aligned_cols=43 Identities=33% Similarity=0.588 Sum_probs=40.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..++|||||||+.+++++|+++|++||.|.+|.+++|+. |++|
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~Tgksk 149 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHK 149 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcC
Confidence 458999999999999999999999999999999999987 8765
No 21
>PLN03121 nucleic acid binding protein; Provisional
Probab=98.49 E-value=2.6e-07 Score=66.35 Aligned_cols=38 Identities=26% Similarity=0.385 Sum_probs=35.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
+..+||+||++.+|+++|+++|+.||+|.+|+|++|..
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~e 42 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGE 42 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 47899999999999999999999999999999999865
No 22
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.47 E-value=6.5e-07 Score=68.56 Aligned_cols=42 Identities=43% Similarity=0.760 Sum_probs=38.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..+|||+|||..+|+++|+++|++||.|..|.+++|+. |+++
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~ 228 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSK 228 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccc
Confidence 58899999999999999999999999999999999987 6654
No 23
>KOG0145|consensus
Probab=98.47 E-value=5e-08 Score=70.93 Aligned_cols=60 Identities=27% Similarity=0.432 Sum_probs=52.7
Q ss_pred CCcCCCcccccccCCCC--CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 44 HLQCFPWDLIWTCTPLP--PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 44 ~~~~~~~~~~~~~~~~~--~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
++|.++++++|+++... +..+|||.+||..+|..+|+++|++||.|...+|+.|.. |.||
T Consensus 107 rLQ~KTIKVSyARPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~sr 169 (360)
T KOG0145|consen 107 RLQNKTIKVSYARPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSR 169 (360)
T ss_pred eeccceEEEEeccCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceec
Confidence 45778888999886664 788999999999999999999999999999999999887 7664
No 24
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=98.38 E-value=7.4e-07 Score=68.26 Aligned_cols=43 Identities=26% Similarity=0.470 Sum_probs=39.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..+.|||+|||..+++++|+++|++||.|.+|.+++|+. |++|
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~sk 131 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSK 131 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcc
Confidence 457899999999999999999999999999999999987 7664
No 25
>KOG0113|consensus
Probab=98.36 E-value=7.7e-07 Score=65.51 Aligned_cols=41 Identities=32% Similarity=0.567 Sum_probs=39.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+.|||+-|+.+++|..|+..|+.||.|..+.|++|+. |+||
T Consensus 102 ~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgksk 143 (335)
T KOG0113|consen 102 KTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSK 143 (335)
T ss_pred ceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCcc
Confidence 7899999999999999999999999999999999998 9886
No 26
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.36 E-value=7.7e-07 Score=61.37 Aligned_cols=42 Identities=31% Similarity=0.711 Sum_probs=38.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...|||||||..+|+++|+++|.+||.|..+.+..|+. |++|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~ 157 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSR 157 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccC
Confidence 48999999999999999999999999999999999985 7654
No 27
>KOG0117|consensus
Probab=98.36 E-value=6.5e-07 Score=68.86 Aligned_cols=50 Identities=28% Similarity=0.595 Sum_probs=45.2
Q ss_pred cccCCCCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 54 WTCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 54 ~~~~~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
|...+.+.++.||||.||.++.|++|..+|++-|+|-+++||+|+. |.+|
T Consensus 75 weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nR 125 (506)
T KOG0117|consen 75 WEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNR 125 (506)
T ss_pred ccCCCCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCc
Confidence 5555567899999999999999999999999999999999999987 8765
No 28
>KOG0109|consensus
Probab=98.35 E-value=2.9e-07 Score=67.68 Aligned_cols=36 Identities=33% Similarity=0.788 Sum_probs=33.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.+|||||||..+++.+|+.+|++||+|.+|.|+++-
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKNY 38 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKNY 38 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeeccc
Confidence 689999999999999999999999999999998763
No 29
>KOG0121|consensus
Probab=98.34 E-value=3.6e-07 Score=60.20 Aligned_cols=39 Identities=21% Similarity=0.278 Sum_probs=35.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
.++.||||||++.++|+++.++|+.+|+|..+-+-.|+.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~ 73 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF 73 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC
Confidence 448999999999999999999999999999998777775
No 30
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=98.33 E-value=1.3e-06 Score=67.76 Aligned_cols=43 Identities=23% Similarity=0.569 Sum_probs=39.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...+|||||||..+++++|+++|++||.|..+.+++|.. |+++
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~ 337 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSK 337 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcC
Confidence 457999999999999999999999999999999999987 7654
No 31
>PLN03213 repressor of silencing 3; Provisional
Probab=98.32 E-value=9.4e-07 Score=69.11 Aligned_cols=38 Identities=32% Similarity=0.581 Sum_probs=35.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.+.+||||||++.+++++|+.+|+.||.|.+|.|+++.
T Consensus 9 ~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET 46 (759)
T PLN03213 9 GGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK 46 (759)
T ss_pred cceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc
Confidence 34899999999999999999999999999999999654
No 32
>KOG0122|consensus
Probab=98.24 E-value=1.7e-06 Score=62.21 Aligned_cols=43 Identities=33% Similarity=0.570 Sum_probs=40.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+...|-|.|||.+++|++|+++|..||.|.++.|++|+. |.+|
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~k 231 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSK 231 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCccc
Confidence 456799999999999999999999999999999999999 9886
No 33
>KOG0125|consensus
Probab=98.23 E-value=1.6e-06 Score=64.64 Aligned_cols=42 Identities=21% Similarity=0.431 Sum_probs=38.3
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCC
Q psy10284 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100 (103)
Q Consensus 59 ~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G 100 (103)
+...++|+|.|||+..-|.||+.+|++||.|.+|.|+.+..|
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG 134 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG 134 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC
Confidence 346689999999999999999999999999999999998763
No 34
>KOG0107|consensus
Probab=98.23 E-value=1.9e-06 Score=59.37 Aligned_cols=39 Identities=23% Similarity=0.618 Sum_probs=36.4
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G 100 (103)
.++||||||+..+++.+|+.+|..||.+.+|+|.+.+.|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPG 48 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPG 48 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCC
Confidence 489999999999999999999999999999999987655
No 35
>KOG4205|consensus
Probab=98.21 E-value=2.9e-06 Score=63.12 Aligned_cols=42 Identities=26% Similarity=0.591 Sum_probs=38.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..++|||+||..+++++++++|++||.|.++.++.|+. +++|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~r 139 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPR 139 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccc
Confidence 47999999999999999999999999999999999998 6654
No 36
>KOG0147|consensus
Probab=98.19 E-value=1.5e-06 Score=67.99 Aligned_cols=83 Identities=31% Similarity=0.375 Sum_probs=59.8
Q ss_pred hhhhcCCCCCCceeEEecCCcccchhhhhccccccccCCCcCCCcccccccCCCCCCceEEEecCCCCCCHHHHHHhhcC
Q psy10284 6 LIWTCTPLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQNEDDVRKIFAP 85 (103)
Q Consensus 6 ~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~l~~~F~~ 85 (103)
+|..+..++-+-+|+|......+++...... .++... -.....++|||||.+++++++++.+|+.
T Consensus 237 aiaLsGqrllg~pv~vq~sEaeknr~a~~s~-------a~~~k~--------~~~p~~rl~vgnLHfNite~~lr~ifep 301 (549)
T KOG0147|consen 237 AIALSGQRLLGVPVIVQLSEAEKNRAANASP-------ALQGKG--------FTGPMRRLYVGNLHFNITEDMLRGIFEP 301 (549)
T ss_pred HhhhcCCcccCceeEecccHHHHHHHHhccc-------cccccc--------cccchhhhhhcccccCchHHHHhhhccC
Confidence 4566677888889998887776666332211 000000 0111244999999999999999999999
Q ss_pred CCceeEEEEeeCCC-CCCC
Q psy10284 86 FGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 86 ~G~i~~~~v~~d~~-G~sr 103 (103)
||.|+.+.+++|.+ |++|
T Consensus 302 fg~Ie~v~l~~d~~tG~sk 320 (549)
T KOG0147|consen 302 FGKIENVQLTKDSETGRSK 320 (549)
T ss_pred cccceeeeecccccccccc
Confidence 99999999999986 8775
No 37
>smart00362 RRM_2 RNA recognition motif.
Probab=98.17 E-value=4.4e-06 Score=46.91 Aligned_cols=35 Identities=37% Similarity=0.718 Sum_probs=32.8
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 64 ~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
+|||+|||..+++++++++|.+||.|..+.+..++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~ 35 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT 35 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC
Confidence 48999999999999999999999999999988876
No 38
>KOG0146|consensus
Probab=98.16 E-value=1.7e-06 Score=63.23 Aligned_cols=44 Identities=75% Similarity=1.285 Sum_probs=40.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
.+.++||||.|...-.|+|++.+|..||.|++|.+.+..+|.||
T Consensus 17 ~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sK 60 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSK 60 (371)
T ss_pred ccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCC
Confidence 35699999999999999999999999999999999999887665
No 39
>KOG0127|consensus
Probab=98.16 E-value=3.6e-06 Score=66.30 Aligned_cols=43 Identities=30% Similarity=0.570 Sum_probs=40.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
....+||.|||+++|+++|.++|++||+|..+.++.|++ |+|+
T Consensus 291 ~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~sk 334 (678)
T KOG0127|consen 291 EGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSK 334 (678)
T ss_pred ccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcc
Confidence 457899999999999999999999999999999999999 8774
No 40
>KOG0124|consensus
Probab=98.10 E-value=2.5e-06 Score=64.70 Aligned_cols=81 Identities=19% Similarity=0.364 Sum_probs=57.0
Q ss_pred CCcchhhhcC----CCCCCceeEEecCCcccch---hhhhccccccccCCCcCCCcccccccCCCCCCceEEEecCCCCC
Q psy10284 2 LPLDLIWTCT----PLPPDKKLFVGMLSKQQNE---DDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQ 74 (103)
Q Consensus 2 ~~~~~~~~~~----~~~~~~~~~V~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~ 74 (103)
+|+.+-.+.+ .++.||++.||+-+.-... .+...+ ....+ .++||..+..+.
T Consensus 164 vPEaAqLAlEqMNg~mlGGRNiKVgrPsNmpQAQpiID~vqe-------------eAk~f--------nRiYVaSvHpDL 222 (544)
T KOG0124|consen 164 VPEAAQLALEQMNGQMLGGRNIKVGRPSNMPQAQPIIDMVQE-------------EAKKF--------NRIYVASVHPDL 222 (544)
T ss_pred CcHHHHHHHHHhccccccCccccccCCCCCcccchHHHHHHH-------------HHHhh--------heEEeeecCCCc
Confidence 3455444444 6789999999964432111 111110 01234 789999999999
Q ss_pred CHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 75 NEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 75 te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+|+|++.+|+.||+|..|.+.++.. +.+|
T Consensus 223 Se~DiKSVFEAFG~I~~C~LAr~pt~~~Hk 252 (544)
T KOG0124|consen 223 SETDIKSVFEAFGEIVKCQLARAPTGRGHK 252 (544)
T ss_pred cHHHHHHHHHhhcceeeEEeeccCCCCCcc
Confidence 9999999999999999999999998 4443
No 41
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.08 E-value=4.8e-06 Score=64.84 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=34.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
+.|||+|||+.+++++|+++|++||.|.+|.+++++.
T Consensus 3 ~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k~ 39 (481)
T TIGR01649 3 PVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGKR 39 (481)
T ss_pred cEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCCC
Confidence 7799999999999999999999999999999987653
No 42
>KOG0109|consensus
Probab=98.07 E-value=3.8e-06 Score=61.84 Aligned_cols=64 Identities=19% Similarity=0.312 Sum_probs=48.1
Q ss_pred hhhccccccccCCCcCCCcccccccCCCCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 32 DNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
+..+..+|+.+.++.+. +..+.....-+.+++||||...++..+++..|++||.|.+|.+++|-
T Consensus 51 dairNLhgYtLhg~nIn---VeaSksKsk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkdy 114 (346)
T KOG0109|consen 51 DAIRNLHGYTLHGVNIN---VEASKSKSKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKDY 114 (346)
T ss_pred HHHhhcccceecceEEE---EEeccccCCCccccccCCCCccccCHHHhhhhcccCCceeeeeecce
Confidence 33445566666665543 23333344466899999999999999999999999999999988773
No 43
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=98.06 E-value=8.1e-06 Score=63.61 Aligned_cols=39 Identities=26% Similarity=0.481 Sum_probs=35.9
Q ss_pred CCceEEEecCCC-CCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~-~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
.++.|||+||++ .+|+++|+++|+.||.|.+|++++++.
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~ 313 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKK 313 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC
Confidence 567999999998 699999999999999999999999864
No 44
>KOG0114|consensus
Probab=98.03 E-value=1e-05 Score=51.63 Aligned_cols=42 Identities=17% Similarity=0.407 Sum_probs=36.6
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 58 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 58 ~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
|...++-|||.|||+.+|.+++.++|..||.|..++|--++.
T Consensus 14 ppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~ 55 (124)
T KOG0114|consen 14 PPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKE 55 (124)
T ss_pred ChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccC
Confidence 334457799999999999999999999999999999876665
No 45
>KOG0123|consensus
Probab=98.02 E-value=9.8e-06 Score=61.60 Aligned_cols=72 Identities=21% Similarity=0.481 Sum_probs=59.0
Q ss_pred CCCCCCceeEEecCCcccchhhhhccccccccCCCcCCCcccccccCCCCCCceEEEecCCCCCCHHHHHHhhcCCCcee
Q psy10284 11 TPLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIE 90 (103)
Q Consensus 11 ~~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~ 90 (103)
.++++|+++|||.+.++.++...... ....-.++|+.+++.+++++.+...|.++|.|.
T Consensus 137 g~ll~~kki~vg~~~~~~er~~~~~~---------------------~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~ 195 (369)
T KOG0123|consen 137 GMLLNGKKIYVGLFERKEEREAPLGE---------------------YKKRFTNVYVKNLEEDSTDEELKDLFSAYGSIT 195 (369)
T ss_pred CcccCCCeeEEeeccchhhhcccccc---------------------hhhhhhhhheeccccccchHHHHHhhcccCcce
Confidence 37899999999999999777544321 111227899999999999999999999999999
Q ss_pred EEEEeeCCCCCCC
Q psy10284 91 ECTVLKGPDGTSK 103 (103)
Q Consensus 91 ~~~v~~d~~G~sr 103 (103)
++.++.+..|+++
T Consensus 196 s~~v~~~~~g~~~ 208 (369)
T KOG0123|consen 196 SVAVMRDSIGKSK 208 (369)
T ss_pred EEEEeecCCCCCC
Confidence 9999999886653
No 46
>KOG0145|consensus
Probab=97.98 E-value=1.1e-05 Score=58.88 Aligned_cols=43 Identities=28% Similarity=0.621 Sum_probs=39.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|.|.-||..+|.++++.+|...|+|++|++++|+- |+|
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqS 82 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQS 82 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccc
Confidence 3447899999999999999999999999999999999998 876
No 47
>smart00360 RRM RNA recognition motif.
Probab=97.95 E-value=1.3e-05 Score=44.64 Aligned_cols=36 Identities=36% Similarity=0.733 Sum_probs=32.0
Q ss_pred EecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 67 VGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 67 VgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
|+|||..+++++++++|++||.|..+.+..++. +++
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~ 37 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKS 37 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCC
Confidence 579999999999999999999999999998875 443
No 48
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.93 E-value=2.7e-05 Score=43.81 Aligned_cols=36 Identities=36% Similarity=0.776 Sum_probs=33.3
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 64 ~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
+|+|+|||..+++++++++|+.||.|..+.+..++.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~ 36 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD 36 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC
Confidence 389999999999999999999999999999988764
No 49
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.92 E-value=2.3e-05 Score=62.63 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=33.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCC--CceeEEEEeeC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPF--GTIEECTVLKG 97 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~--G~i~~~~v~~d 97 (103)
..++|||+||++.+++++|+++|++| |.|.+|.++++
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg 270 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD 270 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC
Confidence 34789999999999999999999999 99999988765
No 50
>KOG0123|consensus
Probab=97.81 E-value=2.7e-05 Score=59.21 Aligned_cols=69 Identities=16% Similarity=0.368 Sum_probs=49.0
Q ss_pred cccchhhhhccccccccCCCcCCCcccccccCCCCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCC
Q psy10284 26 KQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100 (103)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G 100 (103)
...+.+...+..++..+.+..+ ..-|+. .+..-+||.||+..++..+|.+.|+.||.|.+|+|++|..|
T Consensus 46 ~~~da~~A~~~~n~~~~~~~~~---rim~s~---rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g 114 (369)
T KOG0123|consen 46 QPADAERALDTMNFDVLKGKPI---RIMWSQ---RDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG 114 (369)
T ss_pred CHHHHHHHHHHcCCcccCCcEE---Eeehhc---cCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC
Confidence 3334555555555544544333 333322 22344999999999999999999999999999999999876
No 51
>KOG0105|consensus
Probab=97.78 E-value=2.3e-05 Score=54.70 Aligned_cols=35 Identities=23% Similarity=0.564 Sum_probs=32.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEe
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
..++|||||||-++.+.+++++|-+||.|..+.|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK 39 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELK 39 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhhcceEEEEec
Confidence 45899999999999999999999999999998763
No 52
>KOG0108|consensus
Probab=97.76 E-value=3.2e-05 Score=59.97 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=39.4
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+.+||||+|+++++++|..+|+..|.|.+++++.|++ |++|
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~ 60 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPK 60 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcC
Confidence 7899999999999999999999999999999999999 8875
No 53
>KOG4207|consensus
Probab=97.68 E-value=4.2e-05 Score=54.19 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=39.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
....|-|-||.+.++.++|+.+|++||.|.+|.|.+|+. +++|
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sR 55 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSR 55 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceeccccccccccc
Confidence 447899999999999999999999999999999999998 7654
No 54
>KOG0117|consensus
Probab=97.60 E-value=6.9e-05 Score=57.95 Aligned_cols=38 Identities=26% Similarity=0.452 Sum_probs=34.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
+-+-|||.||+.++|++.|+++|++||.|++|+.++|-
T Consensus 258 ~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rDY 295 (506)
T KOG0117|consen 258 KVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRDY 295 (506)
T ss_pred heeeeeeeccchhhhHHHHHHHHHhccceEEeecccce
Confidence 45779999999999999999999999999999888773
No 55
>KOG0146|consensus
Probab=97.57 E-value=0.0001 Score=54.06 Aligned_cols=45 Identities=27% Similarity=0.456 Sum_probs=41.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 59 ~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
++++|+|||-.||.+..+.+|...|..||.|.+.+|..|+. ++||
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSK 327 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSK 327 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhcccccc
Confidence 46899999999999999999999999999999999999998 7665
No 56
>KOG0131|consensus
Probab=97.54 E-value=7.5e-05 Score=51.82 Aligned_cols=43 Identities=30% Similarity=0.580 Sum_probs=37.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEE-EEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC-TVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~-~v~~d~~-G~sr 103 (103)
.+.++|||||...++|..|.+.|+.||.+.+. .+++|.+ |.++
T Consensus 95 vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~ 139 (203)
T KOG0131|consen 95 VGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPK 139 (203)
T ss_pred ccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCC
Confidence 34789999999999999999999999998874 7899988 7653
No 57
>KOG0533|consensus
Probab=97.45 E-value=0.00017 Score=52.16 Aligned_cols=42 Identities=26% Similarity=0.399 Sum_probs=38.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
...+++|.|||..+++++|+++|+.||.+..+-|-.|+.|+|
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s 123 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRS 123 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCC
Confidence 447899999999999999999999999999999999998765
No 58
>KOG0415|consensus
Probab=97.45 E-value=0.00013 Score=55.29 Aligned_cols=42 Identities=36% Similarity=0.714 Sum_probs=38.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
....|||.-|..-+|+++|.-+|+.||.|.+|.|++|.. |-|
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgds 280 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDS 280 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccch
Confidence 346799999999999999999999999999999999997 754
No 59
>KOG0124|consensus
Probab=97.45 E-value=6.8e-05 Score=57.06 Aligned_cols=43 Identities=33% Similarity=0.588 Sum_probs=40.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
-.|++|||.++++..|+.+|..|..||.|.++.+..|+. |++|
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHK 155 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHK 155 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeeccccccccccc
Confidence 348999999999999999999999999999999999998 8775
No 60
>KOG0131|consensus
Probab=97.37 E-value=0.00015 Score=50.41 Aligned_cols=39 Identities=23% Similarity=0.386 Sum_probs=36.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
+..+||||||+..++++.|.++|-+.|.|.++.+++|+.
T Consensus 8 qd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv 46 (203)
T KOG0131|consen 8 QDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRV 46 (203)
T ss_pred CCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhh
Confidence 447899999999999999999999999999999999986
No 61
>KOG0111|consensus
Probab=97.23 E-value=0.00015 Score=51.92 Aligned_cols=41 Identities=24% Similarity=0.499 Sum_probs=38.9
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+.||||+|..++||.-|-..|-+||.|.++.++.|-+ +++|
T Consensus 11 rtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHR 52 (298)
T KOG0111|consen 11 RTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHR 52 (298)
T ss_pred eeEEeccchHHHHHHHHHhccccccchhhcccccchhccccc
Confidence 7899999999999999999999999999999999998 7775
No 62
>KOG0130|consensus
Probab=97.08 E-value=0.00062 Score=45.47 Aligned_cols=40 Identities=23% Similarity=0.378 Sum_probs=36.7
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
--|||.++...+||+++.+.|..||+|..+.+-.|+. |-.
T Consensus 73 wIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~ 113 (170)
T KOG0130|consen 73 WIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYV 113 (170)
T ss_pred EEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccc
Confidence 4599999999999999999999999999999999987 754
No 63
>KOG1548|consensus
Probab=97.08 E-value=0.0012 Score=49.78 Aligned_cols=44 Identities=14% Similarity=0.267 Sum_probs=34.9
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCceeE--------EEEeeCCCCCC
Q psy10284 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE--------CTVLKGPDGTS 102 (103)
Q Consensus 59 ~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~--------~~v~~d~~G~s 102 (103)
...+.+|||.|||.++|-+++.++|+.||-|.+ |++-+|..|+.
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~l 182 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKL 182 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCc
Confidence 346688999999999999999999999997654 55555555543
No 64
>KOG0127|consensus
Probab=97.04 E-value=0.00094 Score=53.07 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=38.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..|||++||++++.++|.+.|+.+|.|..|.++.++. +.+|
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~R 47 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKR 47 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCccccc
Confidence 7899999999999999999999999999999999987 6654
No 65
>KOG0132|consensus
Probab=96.92 E-value=0.00072 Score=55.42 Aligned_cols=38 Identities=26% Similarity=0.528 Sum_probs=33.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
-++.||||+|+..+++.+|..+|+.||+|.++.++-.+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R 457 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR 457 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC
Confidence 34889999999999999999999999999998765443
No 66
>KOG4212|consensus
Probab=96.92 E-value=0.0014 Score=51.03 Aligned_cols=43 Identities=16% Similarity=0.370 Sum_probs=38.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcC-CCceeEEEEeeCCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAP-FGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~-~G~i~~~~v~~d~~G~sr 103 (103)
..+.+||.|||+++.+.+|+++|.. -|+|+.|.+..|..|++|
T Consensus 43 r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~r 86 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKAR 86 (608)
T ss_pred ccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcC
Confidence 3466999999999999999999975 799999999999998876
No 67
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=96.91 E-value=0.0016 Score=50.61 Aligned_cols=27 Identities=22% Similarity=0.445 Sum_probs=24.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPF 86 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~ 86 (103)
...++|||||||+.+|+++|+++|.+|
T Consensus 173 ~~~r~lyVgnLp~~~t~~~l~~~F~~~ 199 (509)
T TIGR01642 173 RQARRLYVGGIPPEFVEEAVVDFFNDL 199 (509)
T ss_pred ccccEEEEeCCCCCCCHHHHHHHHHHH
Confidence 356899999999999999999999975
No 68
>KOG0153|consensus
Probab=96.72 E-value=0.0024 Score=48.24 Aligned_cols=38 Identities=29% Similarity=0.505 Sum_probs=33.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.-..||||+|-..++|.+++++|.+||+|.++.++..+
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~ 264 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK 264 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc
Confidence 44789999999999999999999999999999876543
No 69
>KOG0116|consensus
Probab=96.43 E-value=0.003 Score=48.93 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=31.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEee
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~ 96 (103)
..|||+|||.+++..+|++.|.+||.|....|..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~v 322 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQV 322 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEE
Confidence 4499999999999999999999999999987754
No 70
>KOG4206|consensus
Probab=96.43 E-value=0.0061 Score=43.43 Aligned_cols=36 Identities=25% Similarity=0.669 Sum_probs=31.8
Q ss_pred ceEEEecCCCCCCHHHHHH----hhcCCCceeEEEEeeCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRK----IFAPFGTIEECTVLKGP 98 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~----~F~~~G~i~~~~v~~d~ 98 (103)
..|||.||+..+..++|+. +|++||+|.++...+..
T Consensus 10 ~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~ 49 (221)
T KOG4206|consen 10 GTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP 49 (221)
T ss_pred ceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC
Confidence 4899999999999999888 99999999999766544
No 71
>KOG0151|consensus
Probab=96.39 E-value=0.0038 Score=51.01 Aligned_cols=39 Identities=23% Similarity=0.486 Sum_probs=35.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
+..+++|||||+..++++.|-..|..||.|.++++|.-+
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpR 210 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPR 210 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeeccc
Confidence 577999999999999999999999999999999988644
No 72
>KOG4212|consensus
Probab=96.32 E-value=0.003 Score=49.22 Aligned_cols=36 Identities=11% Similarity=0.152 Sum_probs=33.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEe
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
.+.|.|||.|||++.|+..|++-|-.||.|..+.||
T Consensus 534 rKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadim 569 (608)
T KOG4212|consen 534 RKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIM 569 (608)
T ss_pred ccccEEEEecCCccccHHHHHHHHHhccceehhhhh
Confidence 467999999999999999999999999999998873
No 73
>KOG4209|consensus
Probab=96.21 E-value=0.0045 Score=44.42 Aligned_cols=44 Identities=23% Similarity=0.246 Sum_probs=39.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
.+...+||||+.+.+|-+++..+|+.||.|..+.+..|+. |++|
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k 143 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPK 143 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcc
Confidence 4668899999999999999999999999999999999998 7654
No 74
>KOG4454|consensus
Probab=96.09 E-value=0.0021 Score=46.01 Aligned_cols=41 Identities=20% Similarity=0.351 Sum_probs=37.5
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
.+.|||+|+...++|+-|.++|-+.|.|..+.|..+++|+.
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~ 49 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQ 49 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCC
Confidence 37899999999999999999999999999999998888654
No 75
>KOG0110|consensus
Probab=95.84 E-value=0.0062 Score=49.55 Aligned_cols=37 Identities=24% Similarity=0.492 Sum_probs=34.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
..++|.|.|||+..+-.+++++|..||.+.+|+|+.-
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK 648 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKK 648 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchh
Confidence 3589999999999999999999999999999999865
No 76
>KOG0106|consensus
Probab=95.52 E-value=0.012 Score=41.92 Aligned_cols=32 Identities=25% Similarity=0.641 Sum_probs=29.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEE
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 94 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v 94 (103)
.++|||+||+.+.+.++..+|..||.+.++.+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~m 33 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADM 33 (216)
T ss_pred CceeecccCCccchhHHHHHHhhcccccccee
Confidence 57999999999999999999999999999854
No 77
>KOG0129|consensus
Probab=95.49 E-value=0.041 Score=43.47 Aligned_cols=43 Identities=23% Similarity=0.511 Sum_probs=37.5
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHhhc-CCCceeEEEEeeCCC
Q psy10284 57 TPLPPDKKLFVGMLSKQQNEDDVRKIFA-PFGTIEECTVLKGPD 99 (103)
Q Consensus 57 ~~~~~~~~lfVgnL~~~~te~~l~~~F~-~~G~i~~~~v~~d~~ 99 (103)
.+.+-.+.+|||+||.-++-++|-.+|+ .||.|.-+-|=.|++
T Consensus 365 q~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k 408 (520)
T KOG0129|consen 365 QPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPK 408 (520)
T ss_pred cccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcc
Confidence 3445668999999999999999999999 699999999888854
No 78
>KOG3152|consensus
Probab=95.47 E-value=0.018 Score=41.95 Aligned_cols=38 Identities=8% Similarity=0.239 Sum_probs=34.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
+..-||+++||..+.-..|+++|++||.|.+|.+....
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~ 110 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPED 110 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchh
Confidence 56789999999999999999999999999999987543
No 79
>KOG0226|consensus
Probab=95.39 E-value=0.017 Score=42.21 Aligned_cols=43 Identities=28% Similarity=0.553 Sum_probs=40.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...+||+|.|..+++++.|-..|.+|-.....++++|+. |+++
T Consensus 189 ~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSk 232 (290)
T KOG0226|consen 189 DDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSK 232 (290)
T ss_pred ccceeecccccccccHHHHHHHHHhccchhhccccccccccccc
Confidence 568999999999999999999999999999999999999 9875
No 80
>KOG0129|consensus
Probab=95.39 E-value=0.012 Score=46.39 Aligned_cols=30 Identities=30% Similarity=0.568 Sum_probs=27.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCcee
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIE 90 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~ 90 (103)
.++++|||+||++++|+.+...|..||.+.
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~ 287 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK 287 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE
Confidence 568999999999999999999999999854
No 81
>KOG4661|consensus
Probab=95.33 E-value=0.014 Score=47.03 Aligned_cols=39 Identities=21% Similarity=0.468 Sum_probs=35.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
-+++|+|.+|+..+.-.+|+.+|++||.|+-.+|+.+-.
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaR 442 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNAR 442 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCC
Confidence 457899999999999999999999999999999988654
No 82
>KOG4660|consensus
Probab=95.24 E-value=0.014 Score=46.43 Aligned_cols=40 Identities=25% Similarity=0.385 Sum_probs=34.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G 100 (103)
....|+|-|||..+++++|+.+|+.||+|..++.-+.++|
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~ 113 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRG 113 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCc
Confidence 4478999999999999999999999999999765554443
No 83
>KOG4208|consensus
Probab=94.60 E-value=0.072 Score=37.72 Aligned_cols=44 Identities=20% Similarity=0.375 Sum_probs=39.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCC-CceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~-G~i~~~~v~~d~~-G~sr 103 (103)
....-+|++.+|..+.+..+..+|.+| |.+.++++.|++. |.||
T Consensus 47 ~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSK 92 (214)
T KOG4208|consen 47 EIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSK 92 (214)
T ss_pred CCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcC
Confidence 345779999999999999999999998 8888899889998 9886
No 84
>KOG4210|consensus
Probab=94.23 E-value=0.053 Score=40.07 Aligned_cols=42 Identities=29% Similarity=0.524 Sum_probs=36.6
Q ss_pred CCceEE-EecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLF-VGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lf-VgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
....+| |+++++.+++++|+.+|..+|.|..++++.++. |.+
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~ 226 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDS 226 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccch
Confidence 445566 999999999999999999999999999998887 654
No 85
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=93.97 E-value=0.066 Score=29.30 Aligned_cols=20 Identities=25% Similarity=0.635 Sum_probs=16.3
Q ss_pred HHHhhcCCCceeEEEEeeCC
Q psy10284 79 VRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 79 l~~~F~~~G~i~~~~v~~d~ 98 (103)
|+++|++||.|.++.+..++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~ 20 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK 20 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS
T ss_pred ChHHhCCcccEEEEEEEeCC
Confidence 67899999999999887655
No 86
>KOG1190|consensus
Probab=93.59 E-value=0.096 Score=40.68 Aligned_cols=38 Identities=26% Similarity=0.471 Sum_probs=33.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.++-+.++|||++++|+++-+++.+||+|+.+.+.+.+
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk 64 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK 64 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccc
Confidence 44779999999999999999999999999998776554
No 87
>KOG4849|consensus
Probab=93.47 E-value=0.027 Score=42.99 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=33.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCC--ceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFG--TIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G--~i~~~~v~~d~~-G~sr 103 (103)
++...+|||||-|++|+++|.+.....| .+.+++...++. |+||
T Consensus 78 Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSK 124 (498)
T KOG4849|consen 78 GRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSK 124 (498)
T ss_pred CceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCccc
Confidence 4556799999999999999999888776 344455555555 7765
No 88
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=93.29 E-value=0.12 Score=32.65 Aligned_cols=36 Identities=19% Similarity=0.386 Sum_probs=21.7
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
+-|++.+++..++.++|++.|++||.|.-|.+.+..
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~ 37 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGD 37 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCC
Confidence 457888899999999999999999999888765543
No 89
>KOG0110|consensus
Probab=92.77 E-value=0.096 Score=42.89 Aligned_cols=39 Identities=28% Similarity=0.435 Sum_probs=34.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
..++|||.||++++|.+++..+|...|.|.++.|.+-++
T Consensus 514 ~~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd 552 (725)
T KOG0110|consen 514 TETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKD 552 (725)
T ss_pred cchhhhhhcCCcccchhHHHHHHHhcCeEEEEEEecccc
Confidence 345599999999999999999999999999998876554
No 90
>KOG0115|consensus
Probab=92.56 E-value=0.12 Score=37.74 Aligned_cols=39 Identities=26% Similarity=0.394 Sum_probs=34.5
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGT 101 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~ 101 (103)
..|||.||+..++.+.+.+.|+.||.|....+.-|-.|+
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k 70 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGK 70 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccccc
Confidence 669999999999999999999999999998777776543
No 91
>KOG0147|consensus
Probab=92.10 E-value=0.029 Score=44.54 Aligned_cols=43 Identities=16% Similarity=0.415 Sum_probs=38.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..+.+|+-.++...+..+|.++|+.+|.|.+|.++.|+. +++|
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rsk 221 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSK 221 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhc
Confidence 447789999999999999999999999999999999998 7654
No 92
>smart00361 RRM_1 RNA recognition motif.
Probab=92.07 E-value=0.22 Score=28.62 Aligned_cols=23 Identities=17% Similarity=0.468 Sum_probs=19.0
Q ss_pred HHHHHHhhc----CCCceeEEE-EeeCC
Q psy10284 76 EDDVRKIFA----PFGTIEECT-VLKGP 98 (103)
Q Consensus 76 e~~l~~~F~----~~G~i~~~~-v~~d~ 98 (103)
+++|++.|+ .||.|.++. |+.|+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~ 29 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDN 29 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCC
Confidence 577888888 999999995 77665
No 93
>KOG1457|consensus
Probab=91.60 E-value=0.12 Score=37.37 Aligned_cols=32 Identities=16% Similarity=0.418 Sum_probs=27.2
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEE
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 94 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v 94 (103)
..|||.||..++||++|+.+|+.|-....++|
T Consensus 211 stlfianl~~~~~ed~l~~~~~~~~gf~~l~~ 242 (284)
T KOG1457|consen 211 STLFIANLGPNCTEDELKQLLSRYPGFHILKI 242 (284)
T ss_pred hhHhhhccCCCCCHHHHHHHHHhCCCceEEEE
Confidence 46999999999999999999999976555543
No 94
>KOG0120|consensus
Probab=91.32 E-value=0.15 Score=40.54 Aligned_cols=43 Identities=33% Similarity=0.598 Sum_probs=38.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+||...++..++++.+.||.+....++.|.. |-++
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~sk 331 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSK 331 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccccccc
Confidence 557899999999999999999999999999999999987 6553
No 95
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=89.77 E-value=0.41 Score=26.47 Aligned_cols=31 Identities=26% Similarity=0.318 Sum_probs=23.0
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCceeEEEEe
Q psy10284 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 64 ~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
-|-|.|.+.+.. +.+..+|.+||+|.+..+.
T Consensus 3 wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~ 33 (53)
T PF14605_consen 3 WISVSGFPPDLA-EEVLEHFASFGEIVDIYVP 33 (53)
T ss_pred EEEEEeECchHH-HHHHHHHHhcCCEEEEEcC
Confidence 366777765554 4566699999999998765
No 96
>KOG0128|consensus
Probab=89.58 E-value=0.22 Score=41.62 Aligned_cols=42 Identities=10% Similarity=0.185 Sum_probs=37.2
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
-..+||.|.|+..|.+.++.++..+|.+.++.++..+.|+++
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpk 777 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPK 777 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhccccc
Confidence 367999999999999999999999999999988887776553
No 97
>KOG1855|consensus
Probab=89.43 E-value=0.87 Score=35.67 Aligned_cols=37 Identities=22% Similarity=0.454 Sum_probs=33.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
.++.|.+-|||.+-.-+.|.++|+.+|.|..++|..-
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckP 266 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKP 266 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCC
Confidence 4478899999999999999999999999999998654
No 98
>KOG0105|consensus
Probab=86.54 E-value=1.4 Score=31.22 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=34.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
...++.|.+||.+.++.+|+++.-..|.|+-..+.+|-.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rDg~ 152 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRDGV 152 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecccc
Confidence 346899999999999999999999999999988887754
No 99
>KOG1995|consensus
Probab=83.85 E-value=1 Score=34.33 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=28.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeE
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE 91 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~ 91 (103)
.....+||-+||..+++.++.++|.++|.|..
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr 95 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKR 95 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceecc
Confidence 35578999999999999999999999997643
No 100
>KOG4211|consensus
Probab=83.46 E-value=2.3 Score=33.78 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=27.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
.-|-+.+|||++|++++.+.|+.++ |..+.+.++
T Consensus 11 ~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~ 44 (510)
T KOG4211|consen 11 FEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR 44 (510)
T ss_pred eEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc
Confidence 4466689999999999999999995 666655554
No 101
>KOG4211|consensus
Probab=82.20 E-value=4 Score=32.52 Aligned_cols=41 Identities=17% Similarity=0.224 Sum_probs=31.2
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeE-EEEeeCCCCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEE-CTVLKGPDGTS 102 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~-~~v~~d~~G~s 102 (103)
..-|-..+||+.+|++++.+.|+-.=-+.. +.+++|+.|++
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~ 144 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRP 144 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCc
Confidence 345777999999999999999998765555 44666666553
No 102
>KOG4206|consensus
Probab=81.28 E-value=3.5 Score=29.59 Aligned_cols=40 Identities=18% Similarity=0.438 Sum_probs=33.7
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 59 ~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.+.+.-+|+-|||..++.+.+..+|++|....+++++...
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~ 182 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPR 182 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCC
Confidence 3455779999999999999999999999988888766533
No 103
>KOG4454|consensus
Probab=80.63 E-value=0.45 Score=34.35 Aligned_cols=40 Identities=25% Similarity=0.434 Sum_probs=34.9
Q ss_pred ceEEEec----CCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 63 KKLFVGM----LSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 63 ~~lfVgn----L~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
.+++.|+ |....+++.+...|++-|.+..+++.++.+|+.
T Consensus 81 ~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rn 124 (267)
T KOG4454|consen 81 RTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRN 124 (267)
T ss_pred cccccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCc
Confidence 5678888 888889999999999999999999998887654
No 104
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=80.58 E-value=4.3 Score=24.93 Aligned_cols=29 Identities=28% Similarity=0.549 Sum_probs=19.7
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeE
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEE 91 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~ 91 (103)
..+|--..|...-..|+.++|+.||.|.-
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~V 37 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIYV 37 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEEE
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEEE
Confidence 34444458999999999999999998764
No 105
>KOG1190|consensus
Probab=80.49 E-value=2.8 Score=32.86 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=32.0
Q ss_pred CceEEEecCCC-CCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 62 DKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 62 ~~~lfVgnL~~-~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
++-|.|.||.. .+|.+-|-.+|+.||.|.+++|+.++.
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkk 335 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKK 335 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCC
Confidence 57788888865 458899999999999999999988763
No 106
>KOG1457|consensus
Probab=80.00 E-value=3.7 Score=29.87 Aligned_cols=34 Identities=21% Similarity=0.335 Sum_probs=28.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEe
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
-+.|||.+||.++--.+|..+|-.|-.-+.+.+-
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK 67 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLK 67 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeee
Confidence 4789999999999999999999998665666553
No 107
>KOG4676|consensus
Probab=79.05 E-value=1.9 Score=33.59 Aligned_cols=35 Identities=20% Similarity=0.374 Sum_probs=31.7
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
.-|-|.||+..+|.++++.+|...|.|.++.|+-.
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~ 42 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPN 42 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCC
Confidence 47889999999999999999999999999887653
No 108
>KOG0112|consensus
Probab=78.12 E-value=0.76 Score=38.90 Aligned_cols=37 Identities=27% Similarity=0.527 Sum_probs=33.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
.+..||+|||...+++.+++..|..+|.|.+|.+-+-
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP 407 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTP 407 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccC
Confidence 5678999999999999999999999999999976443
No 109
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=74.32 E-value=3 Score=32.05 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=26.2
Q ss_pred eEEEecCCCCCCHHH----H--HHhhcCCCceeEEEEee
Q psy10284 64 KLFVGMLSKQQNEDD----V--RKIFAPFGTIEECTVLK 96 (103)
Q Consensus 64 ~lfVgnL~~~~te~~----l--~~~F~~~G~i~~~~v~~ 96 (103)
=+||-+||..+-.++ | .++|.+||.|..+.|-+
T Consensus 116 LvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNk 154 (480)
T COG5175 116 LVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNK 154 (480)
T ss_pred eeEEecCCCCCCcccccccccchhhhhhccceeEEEecc
Confidence 389999998887665 3 38899999999987644
No 110
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=71.12 E-value=4.9 Score=23.19 Aligned_cols=18 Identities=28% Similarity=0.578 Sum_probs=15.9
Q ss_pred HHHHHhhcCCCceeEEEE
Q psy10284 77 DDVRKIFAPFGTIEECTV 94 (103)
Q Consensus 77 ~~l~~~F~~~G~i~~~~v 94 (103)
.++|+.|+++|+|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999998876
No 111
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=68.60 E-value=13 Score=23.10 Aligned_cols=37 Identities=5% Similarity=0.077 Sum_probs=30.7
Q ss_pred ceEEEecCCCCCCHHHHHHhhcC--CCceeEEEEeeCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAP--FGTIEECTVLKGPD 99 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~--~G~i~~~~v~~d~~ 99 (103)
+.|-+.|||...|.++|.+++.. .|...-+.++.|..
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~ 40 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFK 40 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeecc
Confidence 56889999999999999988776 36777788888865
No 112
>KOG0106|consensus
Probab=65.91 E-value=4.1 Score=29.14 Aligned_cols=33 Identities=24% Similarity=0.323 Sum_probs=29.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEE
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~ 92 (103)
...+.+++-+++..+.+.+|.++|.++|.+...
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~ 129 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYV 129 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchh
Confidence 355889999999999999999999999998544
No 113
>KOG2891|consensus
Probab=63.86 E-value=5.8 Score=29.86 Aligned_cols=40 Identities=23% Similarity=0.398 Sum_probs=29.6
Q ss_pred CCCCCCceEEEecCCCC------------CCHHHHHHhhcCCCceeEEEEee
Q psy10284 57 TPLPPDKKLFVGMLSKQ------------QNEDDVRKIFAPFGTIEECTVLK 96 (103)
Q Consensus 57 ~~~~~~~~lfVgnL~~~------------~te~~l~~~F~~~G~i~~~~v~~ 96 (103)
.|+.....+|..+||-. .+++.|+..|+.||.|..|.|+.
T Consensus 144 kpgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 144 KPGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 34455667777777743 36678999999999999887753
No 114
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=61.47 E-value=10 Score=23.39 Aligned_cols=30 Identities=17% Similarity=0.340 Sum_probs=19.1
Q ss_pred ceEEEecCCCCCCHH----HHHHhhcCCC-ceeEE
Q psy10284 63 KKLFVGMLSKQQNED----DVRKIFAPFG-TIEEC 92 (103)
Q Consensus 63 ~~lfVgnL~~~~te~----~l~~~F~~~G-~i~~~ 92 (103)
.-|||.|||.+.+.. .|++++..|| .|.++
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v 37 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV 37 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE
Confidence 459999999998875 4667788885 56654
No 115
>KOG1456|consensus
Probab=59.08 E-value=22 Score=27.82 Aligned_cols=41 Identities=22% Similarity=0.404 Sum_probs=34.9
Q ss_pred CCCceEEEecCCCCCCH-HHHHHhhcCCCceeEEEEeeCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNE-DDVRKIFAPFGTIEECTVLKGPDG 100 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te-~~l~~~F~~~G~i~~~~v~~d~~G 100 (103)
..++-+.|-+|....-. +.|-.+|..||.|.++..|+.+.|
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~g 326 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPG 326 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccc
Confidence 46788999999877655 678899999999999999998864
No 116
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=58.54 E-value=7.1 Score=29.27 Aligned_cols=37 Identities=19% Similarity=0.328 Sum_probs=33.1
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
++.|...|+..+++--.+-..|-+||.|++++++.+.
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~ 51 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSN 51 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCC
Confidence 4668888999999999999999999999999999876
No 117
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=54.38 E-value=14 Score=23.10 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=19.9
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEE
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECT 93 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~ 93 (103)
+-+.|-+.|.. ....+-++|++||+|.+..
T Consensus 7 ~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~ 36 (100)
T PF05172_consen 7 TWVTVFGFPPS-ASNQVLRHFSSFGTILEHF 36 (100)
T ss_dssp CEEEEE---GG-GHHHHHHHHHCCS-EECEE
T ss_pred eEEEEEccCHH-HHHHHHHHHHhcceEEEee
Confidence 44778787777 4466788999999998874
No 118
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=53.21 E-value=6.6 Score=26.92 Aligned_cols=28 Identities=14% Similarity=0.279 Sum_probs=20.3
Q ss_pred CceEEEecCCCCCCHHHHHHhhcC-CCce
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAP-FGTI 89 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~-~G~i 89 (103)
..+|-|.+||..+|++++.+.++. ++.-
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~ 35 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDE 35 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccc
Confidence 379999999999999999998777 6654
No 119
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=50.06 E-value=32 Score=25.21 Aligned_cols=35 Identities=11% Similarity=0.013 Sum_probs=28.9
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
....|+|||+.++..-+..+++..-.+.+..+|.-
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~v~M~Q 130 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDMVLMVQ 130 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceEEEEeH
Confidence 45778999999999999999998777767766653
No 120
>KOG0128|consensus
Probab=48.87 E-value=1 Score=37.85 Aligned_cols=35 Identities=37% Similarity=0.561 Sum_probs=31.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEe
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
...++||.||+..+.++++...|..+|.+..+++.
T Consensus 666 ~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~ 700 (881)
T KOG0128|consen 666 DLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV 700 (881)
T ss_pred HHHHHHHhhcchhhcCchhhhhcCccchhhhHHHH
Confidence 34679999999999999999999999999887765
No 121
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=48.74 E-value=5.8 Score=25.34 Aligned_cols=32 Identities=25% Similarity=0.375 Sum_probs=16.9
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCC-CceeEEEE
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTV 94 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~-G~i~~~~v 94 (103)
..+|||++|..............| |+|.++.+
T Consensus 93 ~~lyvGG~p~~~~~~~~~~~~~~f~GCi~~~~i 125 (131)
T PF00054_consen 93 GPLYVGGLPSSSSRPRPLPISPGFKGCIRNLSI 125 (131)
T ss_dssp SEEEESSSSTTTGCGSSCSCCSB-EEEEEEEEE
T ss_pred cCEEEccCCchhhcccccccCCCeeEEEEEeEE
Confidence 559999999322222222222233 67776654
No 122
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=44.02 E-value=15 Score=18.87 Aligned_cols=17 Identities=18% Similarity=0.495 Sum_probs=10.5
Q ss_pred CCCCHHHHHHhhcCCCc
Q psy10284 72 KQQNEDDVRKIFAPFGT 88 (103)
Q Consensus 72 ~~~te~~l~~~F~~~G~ 88 (103)
.++++++|++.|.+.+.
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 46789999999988653
No 123
>KOG1456|consensus
Probab=42.51 E-value=53 Score=25.80 Aligned_cols=36 Identities=25% Similarity=0.345 Sum_probs=31.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEee
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~ 96 (103)
.+.-+.|.+|-..++|.+|-+..+.||.|..+.++-
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P 65 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMP 65 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEecc
Confidence 346799999999999999999999999999887654
No 124
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=39.69 E-value=55 Score=21.87 Aligned_cols=41 Identities=22% Similarity=0.407 Sum_probs=33.7
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 58 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 58 ~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.......+++++++..++...+...|..+|.+....+....
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (306)
T COG0724 221 LLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSK 261 (306)
T ss_pred cccccceeeccccccccchhHHHHhccccccceeeeccCCC
Confidence 33466889999999999999999999999999766554443
No 125
>KOG2193|consensus
Probab=38.57 E-value=22 Score=28.32 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPF 86 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~ 86 (103)
.++|+|||....+..+++.+|...
T Consensus 2 nklyignL~p~~~psdl~svfg~a 25 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDA 25 (584)
T ss_pred CcccccccCCCCChHHHHHHhccc
Confidence 579999999999999999999864
No 126
>KOG0112|consensus
Probab=37.12 E-value=37 Score=29.30 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=30.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEE
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 94 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v 94 (103)
..++++++|+|..++.-..+...|..||.|..+.+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy 487 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDY 487 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeec
Confidence 35688999999999999999999999999887643
No 127
>KOG4008|consensus
Probab=36.51 E-value=25 Score=25.72 Aligned_cols=31 Identities=16% Similarity=0.386 Sum_probs=27.3
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEE
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~ 92 (103)
...+|+-|+|-..|++.|.+..+++|-+..+
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 3679999999999999999999999966654
No 128
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=36.27 E-value=26 Score=21.49 Aligned_cols=24 Identities=13% Similarity=0.369 Sum_probs=20.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhc
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFA 84 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~ 84 (103)
..+++-+.|||...++++|++..+
T Consensus 51 s~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 51 SKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cCCEEEEeCCCCCCChhhheeeEE
Confidence 348899999999999999998654
No 129
>KOG2135|consensus
Probab=35.53 E-value=17 Score=29.11 Aligned_cols=34 Identities=26% Similarity=0.221 Sum_probs=24.0
Q ss_pred eEEEecCCCCC-CHHHHHHhhcCCCceeEEEEeeC
Q psy10284 64 KLFVGMLSKQQ-NEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 64 ~lfVgnL~~~~-te~~l~~~F~~~G~i~~~~v~~d 97 (103)
-+-+.-.|+.. |..+|..+|.+||+|..|.|-..
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~ 408 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS 408 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCc
Confidence 33344445554 45899999999999999986443
No 130
>KOG2068|consensus
Probab=35.39 E-value=22 Score=27.03 Aligned_cols=36 Identities=22% Similarity=0.409 Sum_probs=27.7
Q ss_pred ceEEEecCCCCCCHHHH-H--HhhcCCCceeEEEEeeCC
Q psy10284 63 KKLFVGMLSKQQNEDDV-R--KIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l-~--~~F~~~G~i~~~~v~~d~ 98 (103)
..+||-+|+.....+.+ + ++|.+||.|..+.+-++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~ 116 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDP 116 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCc
Confidence 44788888877765543 3 679999999999887766
No 131
>KOG4307|consensus
Probab=34.46 E-value=41 Score=28.53 Aligned_cols=40 Identities=15% Similarity=0.058 Sum_probs=32.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHhhcCCCceeE-EEEeeC
Q psy10284 58 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE-CTVLKG 97 (103)
Q Consensus 58 ~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~-~~v~~d 97 (103)
|...+..|||.+||..+++.++-+.|...-.|++ +.|.+-
T Consensus 430 P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~ 470 (944)
T KOG4307|consen 430 PGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRL 470 (944)
T ss_pred CCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccC
Confidence 4456788999999999999999999999888888 555443
No 132
>KOG2314|consensus
Probab=33.19 E-value=1.1e+02 Score=25.40 Aligned_cols=43 Identities=16% Similarity=0.113 Sum_probs=32.7
Q ss_pred CCCceEEEecCCCCCCHH------HHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNED------DVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~------~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
+....++|.|+|.--... -+.++|+++|.|....++.|.+|.+
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggt 104 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGT 104 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCe
Confidence 344779999998655442 3568899999999999998888444
No 133
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=32.69 E-value=67 Score=16.69 Aligned_cols=26 Identities=8% Similarity=0.244 Sum_probs=20.4
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCc
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGT 88 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~ 88 (103)
..+|+.+.....+..++.++...+|.
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg 27 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGG 27 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCC
Confidence 46777776657788999999999875
No 134
>COG5584 Predicted small secreted protein [Function unknown]
Probab=32.63 E-value=51 Score=20.76 Aligned_cols=31 Identities=19% Similarity=0.352 Sum_probs=23.6
Q ss_pred cCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 69 MLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 69 nL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
|++.+.--+-+++.|+++|.|.-.++...+.
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~pe 59 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEPE 59 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEecc
Confidence 4555555567889999999999988876654
No 135
>KOG1271|consensus
Probab=30.99 E-value=84 Score=22.45 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=17.3
Q ss_pred CCCHHHHHHhhcCCCceeEEEEe
Q psy10284 73 QQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 73 ~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
+.|.++|-+.|+.+|=+.-+.|.
T Consensus 183 N~T~dELv~~f~~~~f~~~~tvp 205 (227)
T KOG1271|consen 183 NFTKDELVEEFENFNFEYLSTVP 205 (227)
T ss_pred CccHHHHHHHHhcCCeEEEEeec
Confidence 46889999999999855555543
No 136
>PF12623 Hen1_L: RNA repair, ligase-Pnkp-associating, region of Hen1; InterPro: IPR024740 This entry represents the N-terminal domain of the bacterial Hen1 protein, which is a 3' terminal RNA ribose 2'-O-methyltransferase that is involved in bacterial RNA repair []. Hen1 forms a heterotetramer with Pnkp. The heterotetramer has been shown to repair transfer RNAs cleaved by ribotoxins in vitro []. The N-terminal domain of Hen1 contributes to the ligase activity of the heterotetramer.
Probab=28.40 E-value=1.3e+02 Score=22.04 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=27.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEE-EEeeCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEEC-TVLKGP 98 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~-~v~~d~ 98 (103)
-.+-+.-||..-.++-++++|+..|--..+ .+..|.
T Consensus 119 L~v~~p~lp~rGg~~l~~rLFePLGw~V~a~~~~Ld~ 155 (245)
T PF12623_consen 119 LEVRLPALPCRGGEELVRRLFEPLGWTVTAEPVPLDE 155 (245)
T ss_pred eEEEeeeeecCCcHHHHHHhhcCcCceEEeEeccCCc
Confidence 567788899999999999999999954443 455555
No 137
>PHA01632 hypothetical protein
Probab=28.09 E-value=62 Score=18.34 Aligned_cols=22 Identities=18% Similarity=0.605 Sum_probs=17.3
Q ss_pred ceEEE--ecCCCCCCHHHHHHhhc
Q psy10284 63 KKLFV--GMLSKQQNEDDVRKIFA 84 (103)
Q Consensus 63 ~~lfV--gnL~~~~te~~l~~~F~ 84 (103)
.++|+ -.+|..-|+++|+.++.
T Consensus 15 ikiyilieqvp~kpteeelrkvlp 38 (64)
T PHA01632 15 IKIYILIEQVPQKPTEEELRKVLP 38 (64)
T ss_pred EEEEEehhhcCCCCCHHHHHHHHH
Confidence 34444 79999999999998765
No 138
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=27.71 E-value=1e+02 Score=22.22 Aligned_cols=34 Identities=12% Similarity=0.047 Sum_probs=24.5
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 64 ~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
-..|+|+|+..+..-+..+......+..+.++.-
T Consensus 107 ~~vv~NlPY~iss~ii~~~l~~~~~~~~~~l~~Q 140 (272)
T PRK00274 107 LKVVANLPYNITTPLLFHLLEERDPIRDMVVMVQ 140 (272)
T ss_pred ceEEEeCCccchHHHHHHHHhcCCCCCeeEEEeH
Confidence 5778999999999888888865333555555543
No 139
>PF02210 Laminin_G_2: Laminin G domain; InterPro: IPR012680 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, including a large number of extracellular proteins. The C terminus of the laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions have been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each have five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012679 from INTERPRO).; PDB: 3POY_A 3QCW_B 3R05_B 3ASI_A 3MW4_B 3MW3_A 1QU0_D 1DYK_A 1OKQ_A 3SH4_A ....
Probab=27.09 E-value=26 Score=21.16 Aligned_cols=31 Identities=23% Similarity=0.404 Sum_probs=20.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCC-CceeEEEE
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPF-GTIEECTV 94 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~-G~i~~~~v 94 (103)
..+|+|++|.......... ...| |+|..+.+
T Consensus 94 ~~l~iGg~~~~~~~~~~~~-~~~f~Gci~~l~v 125 (128)
T PF02210_consen 94 GSLYIGGLPESNQPSGSVD-TPGFVGCIRDLRV 125 (128)
T ss_dssp EEEEESSTTTTCTCTTSST-TSB-EEEEEEEEE
T ss_pred CCEEEecccCccccccccC-CCCcEEEcCeEEE
Confidence 5699999998875543333 3344 77777765
No 140
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=25.45 E-value=1e+02 Score=22.80 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=25.8
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 64 ~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
.+.|+|+|+.++...+..+++....+....+|.-
T Consensus 103 d~VvaNlPY~Istpil~~ll~~~~~~~~~vlm~Q 136 (294)
T PTZ00338 103 DVCVANVPYQISSPLVFKLLAHRPLFRCAVLMFQ 136 (294)
T ss_pred CEEEecCCcccCcHHHHHHHhcCCCCceeeeeeh
Confidence 4778999999999999888876555556655543
No 141
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=24.61 E-value=56 Score=23.39 Aligned_cols=31 Identities=26% Similarity=0.392 Sum_probs=23.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhc--CCCceeEE
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFA--PFGTIEEC 92 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~--~~G~i~~~ 92 (103)
..-++|||||+..+..-+.+++. .||.+.-+
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~~~ 129 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVRMV 129 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccceE
Confidence 35688999999999998888876 46654443
No 142
>KOG2253|consensus
Probab=24.39 E-value=55 Score=27.26 Aligned_cols=36 Identities=28% Similarity=0.429 Sum_probs=31.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEE
Q psy10284 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 94 (103)
Q Consensus 59 ~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v 94 (103)
.+....+||||+...+..+-++.+...||-|.++..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr 72 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR 72 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhh
Confidence 345578999999999999999999999999888753
No 143
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=24.23 E-value=51 Score=19.13 Aligned_cols=17 Identities=18% Similarity=0.477 Sum_probs=13.6
Q ss_pred CceEEEecCCCCCCHHH
Q psy10284 62 DKKLFVGMLSKQQNEDD 78 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~ 78 (103)
++.+|+|++|...-.+.
T Consensus 27 Sr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 27 SRRVFLGPIPEIWLQDH 43 (67)
T ss_pred CceEEECCCChHHHHcC
Confidence 48899999998776553
No 144
>PF15063 TC1: Thyroid cancer protein 1
Probab=22.76 E-value=42 Score=20.17 Aligned_cols=27 Identities=19% Similarity=0.311 Sum_probs=22.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCc
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGT 88 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~ 88 (103)
.++--++||-.+++...|..+|..-|.
T Consensus 25 ~RKkasaNIFe~vn~~qlqrLF~~sGD 51 (79)
T PF15063_consen 25 SRKKASANIFENVNLDQLQRLFQKSGD 51 (79)
T ss_pred HhhhhhhhhhhccCHHHHHHHHHHccc
Confidence 356667888899999999999999885
No 145
>COG4009 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.45 E-value=83 Score=19.15 Aligned_cols=26 Identities=19% Similarity=0.468 Sum_probs=21.4
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCc
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGT 88 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~ 88 (103)
..-||--|....+++++++.|+.+|.
T Consensus 49 ~Sy~V~Fl~~~~s~eev~~ele~mga 74 (88)
T COG4009 49 SSYYVVFLEEVESEEEVERELEDMGA 74 (88)
T ss_pred eeEEEEEEeccCCHHHHHHHHHHhCc
Confidence 45666677888999999999999884
No 146
>KOG2591|consensus
Probab=21.33 E-value=3.1e+02 Score=22.86 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=33.8
Q ss_pred CCCCCCceEEEecCCCCCCHHHHHHhhcC--CCceeEEEEeeC
Q psy10284 57 TPLPPDKKLFVGMLSKQQNEDDVRKIFAP--FGTIEECTVLKG 97 (103)
Q Consensus 57 ~~~~~~~~lfVgnL~~~~te~~l~~~F~~--~G~i~~~~v~~d 97 (103)
+|..+.|-+.+.-||..+..++++.+|.. |-.+++|....+
T Consensus 170 rp~~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N 212 (684)
T KOG2591|consen 170 RPNHKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN 212 (684)
T ss_pred ccCcceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec
Confidence 55567788888999999999999999985 788888876543
No 147
>KOG1365|consensus
Probab=20.91 E-value=1.5e+02 Score=23.46 Aligned_cols=41 Identities=12% Similarity=0.161 Sum_probs=31.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeE---EEEeeCCCCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEE---CTVLKGPDGTS 102 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~---~~v~~d~~G~s 102 (103)
...+...+||++.+-+++...|..|..-++ |.++.+..|++
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrP 323 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRP 323 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCc
Confidence 456788999999999999999999875444 56666666653
No 148
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=20.39 E-value=1.5e+02 Score=19.44 Aligned_cols=34 Identities=12% Similarity=0.093 Sum_probs=23.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEee
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~ 96 (103)
.-+.++|+|+..+.+.+..++..........++.
T Consensus 78 ~d~vi~n~Py~~~~~~i~~~l~~~~~~~~~~l~~ 111 (169)
T smart00650 78 PYKVVGNLPYNISTPILFKLLEEPPAFRDAVLMV 111 (169)
T ss_pred CCEEEECCCcccHHHHHHHHHhcCCCcceEEEEE
Confidence 3467899999999998988887644334444443
No 149
>PF00276 Ribosomal_L23: Ribosomal protein L23; InterPro: IPR013025 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found in both eukaryotic L25 and prokaryotic and eukaryotic L23 proteins.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3DF4_T 3DF2_T 4A1E_R 4A1A_R 4A1C_R 4A17_R 2HGU_W 2HGQ_W 1N88_A 2HGJ_W ....
Probab=20.31 E-value=1.2e+02 Score=18.31 Aligned_cols=33 Identities=3% Similarity=0.316 Sum_probs=25.2
Q ss_pred ceEEEecCCCCCCHHHHHHhhcC-CC-ceeEEEEe
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAP-FG-TIEECTVL 95 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~-~G-~i~~~~v~ 95 (103)
.+.|+-.++..+|..++++++++ || .|.+|..+
T Consensus 20 ~n~~tF~V~~~atK~~Ik~aie~iy~V~V~~Vnt~ 54 (91)
T PF00276_consen 20 PNQYTFEVDPRATKTEIKEAIEKIYGVKVKKVNTM 54 (91)
T ss_dssp SSEEEEEETTTSTHHHHHHHHHHHHTSEEEEEEEE
T ss_pred CCEEEEEEeCCCCHHHHHHHHHhhcCCCeeEEEEe
Confidence 35677788999999999999998 56 45566544
Done!