Query psy10284
Match_columns 103
No_of_seqs 166 out of 1838
Neff 7.8
Searched_HMMs 29240
Date Fri Aug 16 22:30:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10284.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/10284hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 99.3 4.9E-12 1.7E-16 78.1 5.3 43 61-103 18-61 (99)
2 1s79_A Lupus LA protein; RRM, 99.2 3.2E-11 1.1E-15 75.0 5.8 42 62-103 11-52 (103)
3 3s7r_A Heterogeneous nuclear r 99.2 6.8E-11 2.3E-15 70.4 6.1 44 60-103 9-53 (87)
4 3s8s_A Histone-lysine N-methyl 99.2 6.9E-11 2.4E-15 74.2 6.1 42 62-103 6-48 (110)
5 1x4e_A RNA binding motif, sing 99.1 1E-10 3.5E-15 69.3 6.4 43 61-103 4-47 (85)
6 2dgs_A DAZ-associated protein 99.1 1.7E-10 6E-15 70.2 6.8 44 60-103 8-52 (99)
7 2dnz_A Probable RNA-binding pr 99.1 2.5E-10 8.7E-15 68.8 6.9 43 61-103 4-47 (95)
8 3bs9_A Nucleolysin TIA-1 isofo 99.1 9.8E-11 3.3E-15 69.5 4.8 43 60-102 4-47 (87)
9 2rs2_A Musashi-1, RNA-binding 99.1 1.8E-10 6.1E-15 71.9 5.8 44 60-103 23-67 (109)
10 1uaw_A Mouse-musashi-1; RNP-ty 99.1 1.2E-10 4.2E-15 67.6 4.6 41 63-103 1-42 (77)
11 2lxi_A RNA-binding protein 10; 99.1 2.3E-11 7.8E-16 73.8 1.5 41 63-103 2-44 (91)
12 2e5h_A Zinc finger CCHC-type a 99.1 3.6E-10 1.2E-14 68.1 6.5 45 59-103 13-58 (94)
13 1sjq_A Polypyrimidine tract-bi 99.1 9.6E-11 3.3E-15 73.6 4.1 40 60-99 14-53 (105)
14 2div_A TRNA selenocysteine ass 99.1 1.7E-10 5.9E-15 70.2 4.8 43 60-102 7-51 (99)
15 3md1_A Nuclear and cytoplasmic 99.1 2.5E-10 8.6E-15 67.2 5.3 40 63-102 2-42 (83)
16 2jrs_A RNA-binding protein 39; 99.1 4.2E-10 1.4E-14 70.1 6.6 44 59-102 23-67 (108)
17 2khc_A Testis-specific RNP-typ 99.1 3.4E-10 1.2E-14 71.0 6.2 44 60-103 38-82 (118)
18 2cqg_A TDP-43, TAR DNA-binding 99.1 2.3E-10 7.9E-15 70.2 5.3 44 60-103 13-57 (103)
19 2dnh_A Bruno-like 5, RNA bindi 99.1 4.2E-10 1.4E-14 69.1 6.3 42 61-102 14-55 (105)
20 2dnm_A SRP46 splicing factor; 99.1 3.9E-10 1.3E-14 69.1 6.1 44 60-103 11-55 (103)
21 2dgp_A Bruno-like 4, RNA bindi 99.1 1.4E-10 4.7E-15 71.4 4.1 44 60-103 11-55 (106)
22 2la6_A RNA-binding protein FUS 99.0 3.8E-10 1.3E-14 68.8 5.9 45 59-103 10-63 (99)
23 4f02_A Polyadenylate-binding p 99.0 1.9E-10 6.5E-15 78.9 5.0 43 61-103 14-57 (213)
24 2cqd_A RNA-binding region cont 99.0 4.6E-10 1.6E-14 70.2 6.3 44 60-103 15-59 (116)
25 1whw_A Hypothetical protein ri 99.0 3.6E-10 1.2E-14 68.7 5.7 43 61-103 7-50 (99)
26 1x4h_A RNA-binding protein 28; 99.0 3.3E-10 1.1E-14 70.1 5.5 43 61-103 14-57 (111)
27 2dh8_A DAZ-associated protein 99.0 2.2E-10 7.6E-15 70.5 4.6 43 60-102 14-57 (105)
28 2mss_A Protein (musashi1); RNA 99.0 1.5E-10 5.1E-15 67.1 3.6 40 64-103 1-41 (75)
29 2lkz_A RNA-binding protein 5; 99.0 2.6E-10 8.9E-15 70.1 4.8 42 62-103 9-53 (95)
30 1x5u_A Splicing factor 3B subu 99.0 4.2E-10 1.4E-14 69.1 5.7 44 60-103 13-57 (105)
31 2m2b_A RNA-binding protein 10; 99.0 1.4E-10 5E-15 74.3 3.8 44 60-103 21-67 (131)
32 3d2w_A TAR DNA-binding protein 99.0 3.1E-10 1.1E-14 68.5 5.0 38 61-98 10-47 (89)
33 3ucg_A Polyadenylate-binding p 99.0 5E-10 1.7E-14 66.7 5.8 41 63-103 7-48 (89)
34 3mdf_A Peptidyl-prolyl CIS-tra 99.0 2.4E-10 8.1E-15 67.6 4.2 42 61-102 6-48 (85)
35 1wg5_A Heterogeneous nuclear r 99.0 4.8E-10 1.6E-14 69.2 5.8 44 60-103 13-57 (104)
36 1x5o_A RNA binding motif, sing 99.0 9.2E-10 3.2E-14 68.6 7.1 43 60-102 23-65 (114)
37 2ywk_A Putative RNA-binding pr 99.0 3.2E-10 1.1E-14 68.4 4.8 42 61-102 15-56 (95)
38 3p5t_L Cleavage and polyadenyl 99.0 1.6E-10 5.6E-15 69.5 3.5 41 63-103 2-45 (90)
39 2do4_A Squamous cell carcinoma 99.0 5.9E-10 2E-14 68.0 6.0 43 60-102 15-57 (100)
40 2x1f_A MRNA 3'-END-processing 99.0 3.9E-10 1.3E-14 68.4 5.1 42 62-103 2-44 (96)
41 2cq0_A Eukaryotic translation 99.0 4.4E-10 1.5E-14 68.9 5.3 42 61-102 14-56 (103)
42 2do0_A HnRNP M, heterogeneous 99.0 6.7E-10 2.3E-14 69.1 6.1 43 60-102 13-55 (114)
43 2cpz_A CUG triplet repeat RNA- 99.0 6.8E-10 2.3E-14 69.4 6.1 43 60-102 23-66 (115)
44 2cph_A RNA binding motif prote 99.0 5.5E-10 1.9E-14 68.7 5.6 44 60-103 13-58 (107)
45 2j8a_A Histone-lysine N-methyl 99.0 3.2E-10 1.1E-14 73.9 4.6 41 63-103 3-48 (136)
46 2cqb_A Peptidyl-prolyl CIS-tra 99.0 5.1E-10 1.7E-14 68.4 5.2 43 61-103 11-54 (102)
47 1x4b_A Heterogeneous nuclear r 99.0 6.7E-10 2.3E-14 69.5 5.8 42 62-103 27-69 (116)
48 4f25_A Polyadenylate-binding p 99.0 4.3E-10 1.5E-14 70.7 5.0 38 62-99 5-42 (115)
49 1x5s_A Cold-inducible RNA-bind 99.0 4.6E-10 1.6E-14 68.6 4.9 44 60-103 10-54 (102)
50 2cq4_A RNA binding motif prote 99.0 7.1E-10 2.4E-14 69.2 5.9 42 62-103 25-67 (114)
51 2hgl_A HNRPF protein, heteroge 99.0 4.2E-10 1.4E-14 73.4 4.8 44 60-103 42-88 (136)
52 2cqc_A Arginine/serine-rich sp 99.0 5E-10 1.7E-14 67.4 4.8 42 61-102 14-56 (95)
53 2cpy_A RNA-binding protein 12; 99.0 6.2E-10 2.1E-14 69.8 5.4 43 61-103 14-57 (114)
54 3ns6_A Eukaryotic translation 99.0 9.9E-11 3.4E-15 72.0 1.6 42 62-103 6-54 (100)
55 1p27_B RNA-binding protein 8A; 99.0 5.6E-10 1.9E-14 68.6 5.0 42 61-102 22-64 (106)
56 1wez_A HnRNP H', FTP-3, hetero 99.0 6.4E-10 2.2E-14 68.8 5.3 42 61-103 14-55 (102)
57 2dgo_A Cytotoxic granule-assoc 99.0 6.9E-10 2.4E-14 69.2 5.4 43 60-102 13-56 (115)
58 3ulh_A THO complex subunit 4; 99.0 7.9E-10 2.7E-14 68.1 5.6 44 59-102 26-69 (107)
59 1x5t_A Splicing factor 3B subu 99.0 5.5E-10 1.9E-14 67.5 4.7 42 62-103 5-48 (96)
60 2dhg_A TRNA selenocysteine ass 99.0 6.8E-10 2.3E-14 68.0 5.2 42 61-102 8-50 (104)
61 3n9u_C Cleavage and polyadenyl 99.0 4.2E-10 1.5E-14 74.7 4.5 43 61-103 54-99 (156)
62 2fy1_A RNA-binding motif prote 99.0 1.2E-09 4E-14 68.9 6.2 43 61-103 6-48 (116)
63 1x4d_A Matrin 3; structural ge 99.0 4.5E-10 1.5E-14 70.0 4.2 39 61-99 14-53 (102)
64 2dng_A Eukaryotic translation 99.0 1.1E-09 3.7E-14 67.2 5.9 42 60-102 13-55 (103)
65 1oo0_B CG8781-PA, drosophila Y 99.0 6.6E-10 2.2E-14 68.8 4.8 44 60-103 24-68 (110)
66 2db1_A Heterogeneous nuclear r 99.0 6.4E-10 2.2E-14 70.3 4.7 44 60-103 15-61 (118)
67 2xs2_A Deleted in azoospermia- 99.0 5.9E-10 2E-14 68.2 4.2 41 62-102 9-49 (102)
68 2kxn_B Transformer-2 protein h 99.0 1.1E-09 3.8E-14 70.4 5.6 44 60-103 44-88 (129)
69 1iqt_A AUF1, heterogeneous nuc 99.0 2.2E-10 7.7E-15 66.3 2.1 40 64-103 1-41 (75)
70 2d9p_A Polyadenylate-binding p 98.9 1.4E-09 4.7E-14 66.6 5.7 40 61-101 14-53 (103)
71 2cjk_A Nuclear polyadenylated 98.9 7.8E-10 2.7E-14 72.1 4.8 42 62-103 3-45 (167)
72 2lmi_A GRSF-1, G-rich sequence 98.9 6.5E-10 2.2E-14 69.0 4.1 44 60-103 9-55 (107)
73 2cq3_A RNA-binding protein 9; 98.9 2.5E-09 8.7E-14 65.4 6.7 40 60-99 13-52 (103)
74 2ad9_A Polypyrimidine tract-bi 98.9 1.1E-09 3.8E-14 70.0 5.3 39 60-98 29-67 (119)
75 2ki2_A SS-DNA binding protein 98.9 2.5E-10 8.5E-15 68.3 2.0 41 63-103 2-43 (90)
76 3ex7_B RNA-binding protein 8A; 98.9 1.2E-09 4.2E-14 69.1 5.3 44 60-103 20-64 (126)
77 1wf0_A TDP-43, TAR DNA-binding 98.9 1.2E-09 4.2E-14 65.1 5.0 37 62-98 5-41 (88)
78 1l3k_A Heterogeneous nuclear r 98.9 1.9E-09 6.6E-14 71.9 6.5 41 62-102 104-145 (196)
79 2cq1_A PTB-like protein L; RRM 98.9 2E-09 6.8E-14 66.8 6.1 38 61-98 14-51 (101)
80 2kt5_A RNA and export factor-b 98.9 1.8E-09 6.1E-14 68.3 5.9 44 60-103 33-76 (124)
81 2ku7_A MLL1 PHD3-CYP33 RRM chi 98.9 1.7E-09 5.9E-14 69.2 5.8 44 60-103 61-105 (140)
82 1wi8_A EIF-4B, eukaryotic tran 98.9 1.8E-09 6.1E-14 66.3 5.6 42 60-102 13-56 (104)
83 2jwn_A Embryonic polyadenylate 98.9 9.7E-10 3.3E-14 69.4 4.3 41 63-103 37-78 (124)
84 3q2s_C Cleavage and polyadenyl 98.9 1.2E-09 4E-14 76.5 5.1 43 61-103 67-112 (229)
85 2j76_E EIF-4B, EIF4B, eukaryot 98.9 9.7E-10 3.3E-14 67.3 4.0 43 60-103 17-61 (100)
86 4a8x_A RNA-binding protein wit 98.9 9.3E-10 3.2E-14 65.2 3.8 38 62-99 4-41 (88)
87 2hgn_A Heterogeneous nuclear r 98.9 9.4E-10 3.2E-14 72.0 4.1 42 61-103 45-86 (139)
88 2dgv_A HnRNP M, heterogeneous 98.9 2E-09 7E-14 64.4 5.3 38 60-97 6-43 (92)
89 2dha_A FLJ20171 protein; RRM d 98.9 8.1E-10 2.8E-14 70.9 3.7 43 61-103 22-68 (123)
90 3r27_A HnRNP L, heterogeneous 98.9 1.9E-09 6.5E-14 67.1 5.3 39 60-98 19-57 (100)
91 1l3k_A Heterogeneous nuclear r 98.9 1.2E-09 4.1E-14 72.9 4.7 42 61-102 12-54 (196)
92 2cpe_A RNA-binding protein EWS 98.9 2.1E-09 7.1E-14 66.8 5.4 43 61-103 14-65 (113)
93 2dnn_A RNA-binding protein 12; 98.9 1E-09 3.6E-14 68.9 3.9 41 62-103 16-56 (109)
94 1x4c_A Splicing factor, argini 98.9 2.3E-09 7.9E-14 66.5 5.4 38 60-97 13-50 (108)
95 2hgm_A HNRPF protein, heteroge 98.9 2.6E-09 8.8E-14 68.9 5.8 43 60-103 40-84 (126)
96 1wex_A Hypothetical protein (r 98.9 3.5E-09 1.2E-13 65.9 6.2 38 61-98 14-51 (104)
97 1p1t_A Cleavage stimulation fa 98.9 9E-10 3.1E-14 67.4 3.3 40 63-102 9-49 (104)
98 1u6f_A Tcubp1, RNA-binding pro 98.9 9.1E-10 3.1E-14 70.8 3.5 43 60-102 40-83 (139)
99 2kn4_A Immunoglobulin G-bindin 98.9 1.3E-09 4.4E-14 71.4 4.3 44 60-103 68-112 (158)
100 2dis_A Unnamed protein product 98.9 1.6E-09 5.3E-14 66.9 4.2 43 61-103 7-52 (109)
101 1h2v_Z 20 kDa nuclear CAP bind 98.9 2.9E-09 1E-13 69.8 5.7 43 60-102 37-80 (156)
102 2cpi_A CCR4-NOT transcription 98.9 3E-09 1E-13 66.3 5.4 39 61-99 14-55 (111)
103 2dgx_A KIAA0430 protein; RRM d 98.9 1.9E-09 6.6E-14 65.5 4.3 40 60-99 7-50 (96)
104 2ek1_A RNA-binding protein 12; 98.9 7.6E-10 2.6E-14 66.7 2.4 42 61-102 14-56 (95)
105 2g4b_A Splicing factor U2AF 65 98.9 4.9E-09 1.7E-13 68.5 6.4 42 61-102 93-135 (172)
106 2err_A Ataxin-2-binding protei 98.9 3.5E-09 1.2E-13 65.9 5.4 42 58-99 25-66 (109)
107 2cqi_A Nucleolysin TIAR; RNA r 98.9 3.8E-09 1.3E-13 64.6 5.3 40 60-99 13-52 (103)
108 3nmr_A Cugbp ELAV-like family 98.9 2E-09 6.8E-14 70.4 4.2 38 62-99 3-40 (175)
109 2dgw_A Probable RNA-binding pr 98.9 5.4E-09 1.9E-13 62.6 5.8 42 60-102 8-49 (91)
110 1wel_A RNA-binding protein 12; 98.9 1.2E-09 4E-14 69.3 3.0 45 58-102 21-66 (124)
111 2cpf_A RNA binding motif prote 98.9 3.3E-09 1.1E-13 64.3 4.9 39 61-99 4-42 (98)
112 2dnl_A Cytoplasmic polyadenyla 98.9 2.9E-09 1E-13 66.6 4.7 38 61-99 7-44 (114)
113 2cqp_A RNA-binding protein 12; 98.8 1.2E-09 4E-14 66.3 2.6 42 61-102 14-56 (98)
114 2e44_A Insulin-like growth fac 98.8 1.3E-09 4.6E-14 65.8 2.8 40 60-99 13-53 (96)
115 2dgt_A RNA-binding protein 30; 98.8 4E-09 1.4E-13 63.4 5.0 38 60-97 8-45 (92)
116 2lea_A Serine/arginine-rich sp 98.8 1.6E-09 5.4E-14 70.1 3.1 43 61-103 46-89 (135)
117 1x4f_A Matrin 3; structural ge 98.8 4.1E-09 1.4E-13 66.8 4.9 38 61-98 24-62 (112)
118 2e5g_A U6 snRNA-specific termi 98.8 9.9E-09 3.4E-13 61.9 6.3 37 61-99 7-43 (94)
119 2dnp_A RNA-binding protein 14; 98.8 3.2E-09 1.1E-13 63.6 4.0 38 60-97 7-44 (90)
120 1rk8_A CG8781-PA, CG8781-PA pr 98.8 5E-09 1.7E-13 69.5 5.3 43 60-102 70-113 (165)
121 3lqv_A PRE-mRNA branch site pr 98.8 9.2E-09 3.1E-13 64.0 6.1 41 59-99 5-45 (115)
122 2ytc_A PRE-mRNA-splicing facto 98.8 6.9E-09 2.4E-13 61.2 5.3 39 60-98 10-48 (85)
123 2krb_A Eukaryotic translation 98.8 3.8E-09 1.3E-13 62.1 4.1 40 63-103 2-47 (81)
124 3md3_A Nuclear and cytoplasmic 98.8 9.5E-09 3.2E-13 66.5 6.2 43 60-102 85-128 (166)
125 2cjk_A Nuclear polyadenylated 98.8 2E-09 6.8E-14 70.2 2.9 42 62-103 87-129 (167)
126 1fxl_A Paraneoplastic encephal 98.8 6E-09 2.1E-13 67.5 5.2 40 63-102 3-43 (167)
127 2qfj_A FBP-interacting repress 98.8 1.5E-08 5.1E-13 68.5 7.4 41 62-102 125-166 (216)
128 3nmr_A Cugbp ELAV-like family 98.8 6.3E-09 2.1E-13 68.0 5.0 42 61-102 94-135 (175)
129 2cpj_A Non-POU domain-containi 98.8 1.2E-08 4.2E-13 61.9 6.0 38 61-98 14-51 (99)
130 3md3_A Nuclear and cytoplasmic 98.8 4.2E-09 1.4E-13 68.2 3.9 40 63-102 1-40 (166)
131 1b7f_A Protein (SXL-lethal pro 98.8 4.9E-09 1.7E-13 68.2 4.0 41 62-102 3-44 (168)
132 2dnq_A RNA-binding protein 4B; 98.8 1.3E-08 4.5E-13 60.8 5.5 36 60-95 6-41 (90)
133 1x4a_A Splicing factor, argini 98.8 1.3E-08 4.5E-13 62.8 5.6 39 60-98 20-58 (109)
134 1why_A Hypothetical protein ri 98.8 1.4E-08 4.6E-13 61.6 5.2 39 60-98 15-53 (97)
135 2yh0_A Splicing factor U2AF 65 98.8 3E-08 1E-12 66.1 7.4 43 60-102 112-155 (198)
136 1b7f_A Protein (SXL-lethal pro 98.7 2.4E-08 8.2E-13 64.9 6.6 43 60-102 87-130 (168)
137 3beg_B Splicing factor, argini 98.7 5.1E-09 1.8E-13 65.7 3.3 37 61-97 15-51 (115)
138 2nlw_A Eukaryotic translation 98.7 9.4E-09 3.2E-13 63.4 4.4 42 61-103 14-61 (105)
139 2la4_A Nuclear and cytoplasmic 98.7 1.6E-08 5.6E-13 61.5 5.4 39 60-98 25-63 (101)
140 2f3j_A RNA and export factor b 98.7 1.2E-08 3.9E-13 68.9 5.1 43 60-102 86-128 (177)
141 2qfj_A FBP-interacting repress 98.7 1.3E-08 4.3E-13 68.8 5.2 41 63-103 29-70 (216)
142 1fxl_A Paraneoplastic encephal 98.7 2.4E-08 8.1E-13 64.6 6.3 42 61-102 87-129 (167)
143 2voo_A Lupus LA protein; RNA-b 98.7 1.7E-08 5.8E-13 68.9 5.5 40 63-102 110-149 (193)
144 2jvr_A Nucleolar protein 3; RN 98.7 8.2E-09 2.8E-13 65.1 3.1 48 50-98 17-65 (111)
145 2dgu_A Heterogeneous nuclear r 98.7 1.5E-08 5.1E-13 62.1 4.1 37 61-97 10-46 (103)
146 2i2y_A Fusion protein consists 98.7 1.2E-08 4.1E-13 66.4 3.8 39 60-98 71-109 (150)
147 2lcw_A RNA-binding protein FUS 98.1 2E-09 6.7E-14 67.4 0.0 42 62-103 7-57 (116)
148 1x4g_A Nucleolysin TIAR; struc 98.7 1.5E-08 5.3E-13 62.6 4.1 39 60-98 23-61 (109)
149 2hvz_A Splicing factor, argini 98.7 1.1E-08 3.9E-13 62.2 3.2 35 63-97 1-35 (101)
150 3tyt_A Heterogeneous nuclear r 98.7 3.2E-08 1.1E-12 67.9 5.8 40 61-100 3-43 (205)
151 3smz_A Protein raver-1, ribonu 98.7 3.7E-08 1.3E-12 69.5 6.2 42 61-102 183-225 (284)
152 2jvo_A Nucleolar protein 3; nu 98.7 4E-08 1.4E-12 61.1 5.3 36 60-95 29-64 (108)
153 1whx_A Hypothetical protein ri 98.7 2E-08 6.9E-13 62.7 4.0 36 63-98 11-46 (111)
154 2fc9_A NCL protein; structure 98.6 3.8E-08 1.3E-12 59.9 5.0 39 61-102 14-52 (101)
155 2xnq_A Nuclear polyadenylated 98.6 4.7E-08 1.6E-12 59.6 5.1 38 58-95 18-56 (97)
156 2kvi_A Nuclear polyadenylated 98.6 4.1E-08 1.4E-12 59.4 4.8 35 61-95 9-44 (96)
157 1wf1_A RNA-binding protein RAL 98.6 7.1E-08 2.4E-12 59.6 5.9 35 60-94 25-60 (110)
158 2e5j_A Methenyltetrahydrofolat 98.6 3.2E-08 1.1E-12 60.0 4.0 38 61-99 18-55 (97)
159 2wbr_A GW182, gawky, LD47780P; 98.6 3.1E-08 1.1E-12 60.5 3.8 38 61-98 6-43 (89)
160 3pgw_S U1-70K; protein-RNA com 98.6 4.2E-08 1.5E-12 74.4 5.4 43 61-103 101-144 (437)
161 1nu4_A U1A RNA binding domain; 98.6 4.1E-08 1.4E-12 59.2 4.3 37 60-96 6-46 (97)
162 4f02_A Polyadenylate-binding p 98.6 6.7E-08 2.3E-12 66.1 5.8 39 61-99 102-140 (213)
163 2cpx_A Hypothetical protein FL 98.6 1.1E-08 3.7E-13 63.6 1.6 31 60-90 23-53 (115)
164 1fj7_A Nucleolin RBD1, protein 98.6 2.6E-09 8.7E-14 65.2 -1.3 42 61-103 16-58 (101)
165 2cq2_A Hypothetical protein LO 98.6 1.6E-08 5.5E-13 64.2 2.3 38 61-98 24-63 (114)
166 2cpd_A Apobec-1 stimulating pr 98.6 1E-07 3.4E-12 57.8 5.5 36 61-96 14-51 (99)
167 2hzc_A Splicing factor U2AF 65 98.6 4E-08 1.4E-12 58.0 3.3 37 62-98 6-53 (87)
168 2e5i_A Heterogeneous nuclear r 98.5 1.4E-07 4.7E-12 60.6 5.5 36 61-96 24-59 (124)
169 2a3j_A U1 small nuclear ribonu 98.5 1.1E-07 3.8E-12 61.1 4.9 38 60-97 27-68 (127)
170 3zzy_A Polypyrimidine tract-bi 98.5 1.5E-07 5.2E-12 61.0 5.0 38 61-98 27-64 (130)
171 2cqh_A IGF-II mRNA-binding pro 98.5 7.9E-08 2.7E-12 57.6 3.2 35 60-94 6-41 (93)
172 1sjr_A Polypyrimidine tract-bi 98.5 1.1E-07 3.7E-12 63.9 4.1 39 60-98 44-82 (164)
173 2ghp_A U4/U6 snRNA-associated 98.5 1.9E-07 6.6E-12 66.1 5.3 43 61-103 209-254 (292)
174 1fje_B Nucleolin RBD12, protei 98.5 3.7E-07 1.3E-11 59.8 6.3 31 62-92 99-129 (175)
175 3sde_A Paraspeckle component 1 98.5 1.4E-07 4.7E-12 66.4 4.4 42 61-102 95-136 (261)
176 1qm9_A Polypyrimidine tract-bi 98.5 1.4E-07 4.7E-12 63.3 4.2 38 62-99 3-41 (198)
177 2adc_A Polypyrimidine tract-bi 98.5 1.2E-07 4.2E-12 65.4 4.0 41 59-99 31-72 (229)
178 3egn_A RNA-binding protein 40; 98.5 1.5E-08 5E-13 65.5 -0.8 34 59-92 42-75 (143)
179 2fc8_A NCL protein; structure 98.4 3.1E-07 1.1E-11 55.8 5.0 40 60-102 13-53 (102)
180 3smz_A Protein raver-1, ribonu 98.4 2.6E-07 9.1E-12 65.1 5.3 42 61-102 94-136 (284)
181 3pgw_A U1-A; protein-RNA compl 98.4 4.3E-07 1.5E-11 63.9 5.9 37 61-97 8-48 (282)
182 2ghp_A U4/U6 snRNA-associated 98.4 2.7E-07 9.2E-12 65.3 4.7 41 60-100 39-79 (292)
183 3sde_A Paraspeckle component 1 98.4 3.7E-07 1.3E-11 64.2 4.6 38 61-98 21-58 (261)
184 1wg1_A KIAA1579 protein, homol 98.4 5.1E-07 1.7E-11 53.7 4.5 33 62-95 5-37 (88)
185 3tyt_A Heterogeneous nuclear r 98.4 2.4E-07 8.1E-12 63.6 3.4 38 61-98 122-161 (205)
186 1x5p_A Negative elongation fac 98.3 1.4E-06 4.7E-11 52.6 6.0 36 60-97 13-48 (97)
187 3u1l_A PRE-mRNA-splicing facto 98.3 3.5E-07 1.2E-11 64.7 3.3 39 60-98 132-179 (240)
188 3pgw_A U1-A; protein-RNA compl 98.3 9.5E-07 3.3E-11 62.2 5.5 39 61-99 206-244 (282)
189 1fjc_A Nucleolin RBD2, protein 98.3 5.2E-07 1.8E-11 54.2 3.0 32 61-92 15-46 (96)
190 2adc_A Polypyrimidine tract-bi 98.3 7.6E-06 2.6E-10 56.3 9.3 37 61-97 150-187 (229)
191 1qm9_A Polypyrimidine tract-bi 98.3 5.6E-06 1.9E-10 55.3 8.2 38 61-98 119-157 (198)
192 1owx_A Lupus LA protein, SS-B, 98.2 1.6E-06 5.5E-11 55.5 4.5 39 61-99 17-56 (121)
193 2bz2_A Negative elongation fac 98.1 3.3E-06 1.1E-10 53.4 5.0 36 60-97 37-72 (121)
194 3tht_A Alkylated DNA repair pr 98.1 2.2E-06 7.6E-11 63.5 3.6 38 60-97 16-55 (345)
195 1fje_B Nucleolin RBD12, protei 98.1 2.6E-07 9E-12 60.5 -1.4 32 60-91 11-42 (175)
196 2g4b_A Splicing factor U2AF 65 98.0 2.6E-06 9E-11 55.3 3.0 37 62-98 4-51 (172)
197 2yh0_A Splicing factor U2AF 65 97.9 1E-05 3.5E-10 53.6 3.9 37 62-98 4-51 (198)
198 2diu_A KIAA0430 protein; struc 97.9 2E-05 6.7E-10 48.6 4.5 30 63-92 10-44 (96)
199 2pe8_A Splicing factor 45; RRM 97.8 5.7E-05 2E-09 46.6 5.7 38 62-99 8-50 (105)
200 1jmt_A Splicing factor U2AF 35 97.3 2E-05 6.8E-10 48.6 -1.5 36 67-102 20-67 (104)
201 2dit_A HIV TAT specific factor 97.1 0.0011 3.6E-08 40.8 5.2 38 61-99 14-62 (112)
202 2d9o_A DNAJ (HSP40) homolog, s 96.9 0.00096 3.3E-08 40.8 3.8 25 72-96 27-51 (100)
203 3v4m_A Splicing factor U2AF 65 96.6 0.002 7E-08 39.4 3.7 37 63-99 6-52 (105)
204 3ue2_A Poly(U)-binding-splicin 96.3 0.0045 1.5E-07 38.9 4.1 38 62-99 20-62 (118)
205 3s6e_A RNA-binding protein 39; 95.4 0.011 3.9E-07 36.8 2.9 23 77-99 32-54 (114)
206 4f25_A Polyadenylate-binding p 95.0 0.0069 2.4E-07 37.2 1.0 47 11-78 67-113 (115)
207 2dnr_A Synaptojanin-1; RRM dom 94.3 0.061 2.1E-06 32.5 4.1 36 63-98 8-51 (91)
208 2l9w_A U4/U6 snRNA-associated- 90.7 0.3 1E-05 30.7 3.7 43 58-100 17-64 (117)
209 1ufw_A Synaptojanin 2; RNP dom 89.6 0.24 8.1E-06 30.1 2.5 39 60-98 13-60 (95)
210 1whv_A Poly(A)-specific ribonu 89.3 0.61 2.1E-05 28.5 4.2 27 63-89 16-42 (100)
211 1uw4_A UPF3X; nonsense mediate 88.2 1.3 4.4E-05 26.4 5.1 34 63-96 2-35 (91)
212 3dxb_A Thioredoxin N-terminall 84.7 0.71 2.4E-05 30.9 3.0 26 74-99 141-166 (222)
213 3ctr_A Poly(A)-specific ribonu 83.5 1.5 5E-05 26.9 3.7 25 64-88 7-31 (101)
214 3pq1_A Poly(A) RNA polymerase; 83.4 0.66 2.3E-05 35.5 2.6 33 63-96 54-86 (464)
215 2dhx_A Poly (ADP-ribose) polym 82.4 3.5 0.00012 25.3 5.1 33 62-94 8-45 (104)
216 2l08_A Regulator of nonsense t 68.1 3.8 0.00013 24.7 2.5 27 63-89 10-36 (97)
217 1wwh_A Nucleoporin 35, nucleop 44.9 21 0.00071 22.2 3.1 31 63-94 25-55 (119)
218 3fut_A Dimethyladenosine trans 42.8 23 0.00078 24.7 3.4 34 63-97 111-144 (271)
219 1wey_A Calcipressin 1; structu 40.4 19 0.00065 21.9 2.3 33 63-95 6-43 (104)
220 3uzu_A Ribosomal RNA small sub 40.2 10 0.00036 26.5 1.3 35 63-97 115-149 (279)
221 1qyr_A KSGA, high level kasuga 33.9 42 0.0014 22.9 3.6 34 63-96 91-124 (252)
222 3tqs_A Ribosomal RNA small sub 33.7 13 0.00043 25.7 0.8 33 65-97 99-131 (255)
223 3ftd_A Dimethyladenosine trans 32.5 33 0.0011 23.4 2.8 33 64-96 97-129 (249)
224 1i4w_A Mitochondrial replicati 27.9 28 0.00096 25.4 1.9 21 65-85 145-165 (353)
225 1ytr_A Bacteriocin plantaricin 22.7 51 0.0017 14.5 1.5 11 77-87 15-25 (26)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.28 E-value=4.9e-12 Score=78.07 Aligned_cols=43 Identities=23% Similarity=0.526 Sum_probs=39.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
++++|||+|||.++|+++|+++|++||.|.+|.+++|+. |++|
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k 61 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSL 61 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCccc
Confidence 458999999999999999999999999999999999988 7754
No 2
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=3.2e-11 Score=75.04 Aligned_cols=42 Identities=10% Similarity=0.237 Sum_probs=38.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
.++|||||||+++|+++|+++|++||.|.+|.|++|+.|++|
T Consensus 11 ~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~r 52 (103)
T 1s79_A 11 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFK 52 (103)
T ss_dssp GGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCC
T ss_pred CCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCc
Confidence 488999999999999999999999999999999999876654
No 3
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.16 E-value=6.8e-11 Score=70.43 Aligned_cols=44 Identities=34% Similarity=0.692 Sum_probs=39.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+++++|+++|++||.|.++.+++|+. |+++
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~ 53 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSR 53 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccc
Confidence 3458999999999999999999999999999999999987 7653
No 4
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.15 E-value=6.9e-11 Score=74.23 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=39.4
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
.++|||+|||+.+++++|+++|++||.|.+|.|++|+. |++|
T Consensus 6 ~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~r 48 (110)
T 3s8s_A 6 LKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHL 48 (110)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEE
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCcee
Confidence 48899999999999999999999999999999999998 8764
No 5
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.15 E-value=1e-10 Score=69.33 Aligned_cols=43 Identities=19% Similarity=0.367 Sum_probs=39.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
.+++|||+|||..+++++|+++|++||.|.++.+++|+. |+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~ 47 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCK 47 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcC
Confidence 458999999999999999999999999999999999987 7654
No 6
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.13 E-value=1.7e-10 Score=70.24 Aligned_cols=44 Identities=23% Similarity=0.530 Sum_probs=40.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+++++|+++|++||.|.+|.+++|+. |++|
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 52 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPR 52 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCC
Confidence 3458999999999999999999999999999999999987 7654
No 7
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.5e-10 Score=68.83 Aligned_cols=43 Identities=42% Similarity=0.696 Sum_probs=39.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
.+++|||+|||..+++++|+++|++||.|.++.+++|+. |+++
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~ 47 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSK 47 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCcee
Confidence 458999999999999999999999999999999999987 7664
No 8
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.10 E-value=9.8e-11 Score=69.54 Aligned_cols=43 Identities=35% Similarity=0.552 Sum_probs=38.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|||+|||..+++++|+++|++||.|.++.+++|+. |++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~ 47 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKS 47 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCcc
Confidence 3458999999999999999999999999999999999976 654
No 9
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.09 E-value=1.8e-10 Score=71.90 Aligned_cols=44 Identities=34% Similarity=0.681 Sum_probs=38.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+++++|+++|++||.|.+|.|++|+. |++|
T Consensus 23 ~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~k 67 (109)
T 2rs2_A 23 SSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSR 67 (109)
T ss_dssp ---CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcC
Confidence 4568999999999999999999999999999999999987 7764
No 10
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.08 E-value=1.2e-10 Score=67.64 Aligned_cols=41 Identities=37% Similarity=0.723 Sum_probs=37.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
++|||+|||.++++++|+++|++||.|.++.+++|+. |+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~ 42 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSR 42 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcC
Confidence 4699999999999999999999999999999999987 7664
No 11
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.08 E-value=2.3e-11 Score=73.82 Aligned_cols=41 Identities=24% Similarity=0.503 Sum_probs=38.5
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCC-ceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFG-TIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G-~i~~~~v~~d~~-G~sr 103 (103)
..|||+|||.++|+++|+++|++|| .|.+|+|++|+. |++|
T Consensus 2 ~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~r 44 (91)
T 2lxi_A 2 NIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSR 44 (91)
T ss_dssp CEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcC
Confidence 6799999999999999999999999 899999999998 8775
No 12
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=3.6e-10 Score=68.06 Aligned_cols=45 Identities=27% Similarity=0.539 Sum_probs=40.4
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 59 ~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
....++|||+|||..+++++|+++|++||.|.++.+++|+. |+++
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~ 58 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSK 58 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCT
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcc
Confidence 34568999999999999999999999999999999999987 7654
No 13
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=9.6e-11 Score=73.61 Aligned_cols=40 Identities=25% Similarity=0.469 Sum_probs=36.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
...++|||+|||+++|+++|+++|++||.|.+|.|++|+.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kG 53 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKN 53 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCC
Confidence 3458999999999999999999999999999999998763
No 14
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.06 E-value=1.7e-10 Score=70.17 Aligned_cols=43 Identities=19% Similarity=0.337 Sum_probs=39.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCcee-EEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIE-ECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~-~~~v~~d~~-G~s 102 (103)
...++|||+|||..+++++|+++|++||.|. ++.+++|+. |++
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~ 51 (99)
T 2div_A 7 GMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIP 51 (99)
T ss_dssp SSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCE
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCc
Confidence 3458999999999999999999999999999 999999986 664
No 15
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.06 E-value=2.5e-10 Score=67.18 Aligned_cols=40 Identities=28% Similarity=0.424 Sum_probs=37.4
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
.+|||+|||..+++++|+++|++||.|.++.+++|+. |++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 42 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSS 42 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCc
Confidence 6899999999999999999999999999999999976 664
No 16
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.06 E-value=4.2e-10 Score=70.14 Aligned_cols=44 Identities=36% Similarity=0.600 Sum_probs=39.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 59 ~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
....++|||+|||..+++++|+++|++||.|.++.+++|+. |++
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~ 67 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRS 67 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCcc
Confidence 34568999999999999999999999999999999999876 654
No 17
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.06 E-value=3.4e-10 Score=70.97 Aligned_cols=44 Identities=27% Similarity=0.489 Sum_probs=40.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||.++++++|+++|++||.|.++.+++|+. |++|
T Consensus 38 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~ 82 (118)
T 2khc_A 38 PEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSK 82 (118)
T ss_dssp CCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcC
Confidence 4568999999999999999999999999999999999987 7664
No 18
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=2.3e-10 Score=70.16 Aligned_cols=44 Identities=30% Similarity=0.394 Sum_probs=39.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||+.+++++|+++|++||.|.+|.|++|+. |++|
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~ 57 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSK 57 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEE
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCcc
Confidence 4558999999999999999999999999999999999987 7653
No 19
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.05 E-value=4.2e-10 Score=69.12 Aligned_cols=42 Identities=69% Similarity=1.258 Sum_probs=38.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
..++|||+|||..+++++|+++|++||.|.+|.|++|+.|++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~ 55 (105)
T 2dnh_A 14 RDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSS 55 (105)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCc
Confidence 458999999999999999999999999999999999976554
No 20
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.05 E-value=3.9e-10 Score=69.10 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=39.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+++++|+++|++||.|.+|.+++|+. |++|
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~ 55 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPR 55 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBC
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCC
Confidence 3458999999999999999999999999999999999987 6654
No 21
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.05 E-value=1.4e-10 Score=71.43 Aligned_cols=44 Identities=39% Similarity=0.620 Sum_probs=40.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+++++|+++|++||.|.+|.|++|+. |++|
T Consensus 11 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~ 55 (106)
T 2dgp_A 11 HDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHK 55 (106)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcc
Confidence 4558999999999999999999999999999999999987 7664
No 22
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.05 E-value=3.8e-10 Score=68.80 Aligned_cols=45 Identities=20% Similarity=0.353 Sum_probs=40.2
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCceeE--------EEEeeCCC-CCCC
Q psy10284 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE--------CTVLKGPD-GTSK 103 (103)
Q Consensus 59 ~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~--------~~v~~d~~-G~sr 103 (103)
....++|||+|||.++++++|+++|++||.|.+ +.+++|+. |++|
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~ 63 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLK 63 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCee
Confidence 345689999999999999999999999999999 99999987 7653
No 23
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.05 E-value=1.9e-10 Score=78.89 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=39.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..++|||||||+++|+++|+++|++||.|.+|+|++|+. |+++
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~ 57 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSL 57 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCcc
Confidence 347899999999999999999999999999999999987 7653
No 24
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=4.6e-10 Score=70.24 Aligned_cols=44 Identities=36% Similarity=0.606 Sum_probs=40.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+|+++|+++|++||.|.+|.|++|+. |++|
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 59 (116)
T 2cqd_A 15 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSR 59 (116)
T ss_dssp CSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccc
Confidence 3458999999999999999999999999999999999987 7664
No 25
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=3.6e-10 Score=68.75 Aligned_cols=43 Identities=28% Similarity=0.425 Sum_probs=39.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..++|||+|||..+++++|+++|++||.|.+|.+++|+. |+++
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 50 (99)
T 1whw_A 7 GSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPK 50 (99)
T ss_dssp SCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcC
Confidence 458999999999999999999999999999999999986 7654
No 26
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.04 E-value=3.3e-10 Score=70.13 Aligned_cols=43 Identities=28% Similarity=0.483 Sum_probs=39.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..++|||+|||+.+++++|+++|++||.|.+|.|++|+. |+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~ 57 (111)
T 1x4h_A 14 EGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSK 57 (111)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCc
Confidence 458899999999999999999999999999999999987 7654
No 27
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.04 E-value=2.2e-10 Score=70.46 Aligned_cols=43 Identities=28% Similarity=0.564 Sum_probs=39.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|||+|||+.+++++|+++|++||.|.+|.+++|+. |++
T Consensus 14 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~ 57 (105)
T 2dh8_A 14 DEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQS 57 (105)
T ss_dssp SSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCc
Confidence 4568999999999999999999999999999999999976 664
No 28
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.04 E-value=1.5e-10 Score=67.12 Aligned_cols=40 Identities=28% Similarity=0.576 Sum_probs=37.2
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 64 ~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+|||+|||.++++++|+++|++||.|.++.+++|+. |+++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 41 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHR 41 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcC
Confidence 589999999999999999999999999999999986 7664
No 29
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.04 E-value=2.6e-10 Score=70.06 Aligned_cols=42 Identities=7% Similarity=0.307 Sum_probs=38.3
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCc--eeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGT--IEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~--i~~~~v~~d~~-G~sr 103 (103)
...|||+|||+.+|+++|+++|++||. +.+|++++|+. |++|
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~sr 53 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNR 53 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCS
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCc
Confidence 377999999999999999999999995 67999999998 8875
No 30
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.03 E-value=4.2e-10 Score=69.11 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=39.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+++++|+++|++||.|.+|.+++|+. |++|
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 57 (105)
T 1x5u_A 13 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQ 57 (105)
T ss_dssp CTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCC
Confidence 3558999999999999999999999999999999999986 6654
No 31
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.03 E-value=1.4e-10 Score=74.33 Aligned_cols=44 Identities=14% Similarity=0.340 Sum_probs=39.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeE--EEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE--CTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~--~~v~~d~~-G~sr 103 (103)
...++|||+|||+.+|+++|+++|++||.|.. |+|++|+. |++|
T Consensus 21 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~r 67 (131)
T 2m2b_A 21 NANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNR 67 (131)
T ss_dssp CCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcc
Confidence 35589999999999999999999999999977 99999997 8765
No 32
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.03 E-value=3.1e-10 Score=68.53 Aligned_cols=38 Identities=18% Similarity=0.452 Sum_probs=34.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
...+|||||||+++|+++|+++|++||.|.+|.|++|.
T Consensus 10 ~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~s 47 (89)
T 3d2w_A 10 HGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPF 47 (89)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCC
Confidence 34899999999999999999999999999999999874
No 33
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.03 E-value=5e-10 Score=66.68 Aligned_cols=41 Identities=20% Similarity=0.416 Sum_probs=38.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
++|||+|||..+++++|+++|++||.|.++.+++|+. |+++
T Consensus 7 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 48 (89)
T 3ucg_A 7 RSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPK 48 (89)
T ss_dssp TEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcc
Confidence 7899999999999999999999999999999999986 7654
No 34
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.02 E-value=2.4e-10 Score=67.57 Aligned_cols=42 Identities=21% Similarity=0.460 Sum_probs=38.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
..++|||+|||..+++++|+++|++||.|.++.+++|+. |++
T Consensus 6 ~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~ 48 (85)
T 3mdf_A 6 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKH 48 (85)
T ss_dssp CSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCcc
Confidence 458999999999999999999999999999999999866 654
No 35
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=4.8e-10 Score=69.23 Aligned_cols=44 Identities=14% Similarity=0.156 Sum_probs=38.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeE-EEEeeCCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE-CTVLKGPDGTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~-~~v~~d~~G~sr 103 (103)
...++|||+|||+.+|+++|+++|++||.|.+ +.|++|..|++|
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~ 57 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRST 57 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcc
Confidence 34589999999999999999999999999998 888888557764
No 36
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=9.2e-10 Score=68.56 Aligned_cols=43 Identities=23% Similarity=0.550 Sum_probs=38.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
...++|||+|||..+++++|+++|++||.|.++.|++|+.|++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~ 65 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 65 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCc
Confidence 4568999999999999999999999999999999999976543
No 37
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.02 E-value=3.2e-10 Score=68.41 Aligned_cols=42 Identities=26% Similarity=0.518 Sum_probs=38.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
..++|||+|||..+++++|+++|++||.|.+|.+++|+.|++
T Consensus 15 ~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~ 56 (95)
T 2ywk_A 15 ADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKP 56 (95)
T ss_dssp GGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCC
Confidence 448999999999999999999999999999999999987554
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.02 E-value=1.6e-10 Score=69.49 Aligned_cols=41 Identities=24% Similarity=0.429 Sum_probs=36.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCC--ceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFG--TIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G--~i~~~~v~~d~~-G~sr 103 (103)
.+|||||||+++|+++|+++|++|| .|.++.+++|+. |++|
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~k 45 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSK 45 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEE
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccC
Confidence 5799999999999999999999999 999999999987 7754
No 39
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=5.9e-10 Score=67.98 Aligned_cols=43 Identities=19% Similarity=0.383 Sum_probs=38.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
...++|||+|||..+++++|+++|++||.|.++.++.|+.|++
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~ 57 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKP 57 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCE
Confidence 3458899999999999999999999999999999999886554
No 40
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.02 E-value=3.9e-10 Score=68.37 Aligned_cols=42 Identities=19% Similarity=0.474 Sum_probs=38.6
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+++|||+|||..+++++|+++|++||.|.++.+++|+. |+++
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~ 44 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSK 44 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccc
Confidence 37899999999999999999999999999999999987 7654
No 41
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.01 E-value=4.4e-10 Score=68.86 Aligned_cols=42 Identities=31% Similarity=0.540 Sum_probs=38.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
..++|||+|||..+++++|+++|++||.|.+|.+++|+. |++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~ 56 (103)
T 2cq0_A 14 DNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQS 56 (103)
T ss_dssp SSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCce
Confidence 458999999999999999999999999999999999976 654
No 42
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.01 E-value=6.7e-10 Score=69.12 Aligned_cols=43 Identities=21% Similarity=0.384 Sum_probs=38.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
...++|||+|||..+++++|+++|++||.|.+|.|++|+.|++
T Consensus 13 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~ 55 (114)
T 2do0_A 13 RLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKS 55 (114)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCe
Confidence 3458999999999999999999999999999999999987654
No 43
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.01 E-value=6.8e-10 Score=69.36 Aligned_cols=43 Identities=26% Similarity=0.533 Sum_probs=39.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|||+|||..+++++|+++|++||.|.+|.|++|+. |++
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~ 66 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLS 66 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCc
Confidence 3558999999999999999999999999999999999986 664
No 44
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.01 E-value=5.5e-10 Score=68.72 Aligned_cols=44 Identities=23% Similarity=0.510 Sum_probs=39.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC-CC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG-PD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d-~~-G~sr 103 (103)
...++|||+|||..+++++|+++|++||.|.+|.+++| +. |+++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~ 58 (107)
T 2cph_A 13 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHR 58 (107)
T ss_dssp SCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSC
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcC
Confidence 35589999999999999999999999999999999999 44 6653
No 45
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.01 E-value=3.2e-10 Score=73.94 Aligned_cols=41 Identities=12% Similarity=0.287 Sum_probs=39.4
Q ss_pred ceEEEecC----CCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGML----SKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL----~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
.+|||||| |+.+++.+|+.+|++||+|.+|.++.|+. |+||
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~sl 48 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPL 48 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcee
Confidence 78999999 99999999999999999999999999999 8875
No 46
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=5.1e-10 Score=68.40 Aligned_cols=43 Identities=21% Similarity=0.470 Sum_probs=39.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..++|||+|||..+++++|+++|++||.|.+|.+++|+. |+++
T Consensus 11 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~ 54 (102)
T 2cqb_A 11 TKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR 54 (102)
T ss_dssp CCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcc
Confidence 458999999999999999999999999999999999977 7654
No 47
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=6.7e-10 Score=69.49 Aligned_cols=42 Identities=31% Similarity=0.707 Sum_probs=38.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
.++|||+|||..+++++|+++|++||.|.+|.|++|+. |++|
T Consensus 27 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~ 69 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSR 69 (116)
T ss_dssp HTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcC
Confidence 38899999999999999999999999999999999987 7654
No 48
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.00 E-value=4.3e-10 Score=70.67 Aligned_cols=38 Identities=24% Similarity=0.516 Sum_probs=35.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
..+|||||||+++|+++|+++|++||.|.+|+|++|+.
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~ 42 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 42 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC
Confidence 37899999999999999999999999999999999874
No 49
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=4.6e-10 Score=68.60 Aligned_cols=44 Identities=36% Similarity=0.625 Sum_probs=39.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+++++|+++|++||.|.++.+++|+. |++|
T Consensus 10 ~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~ 54 (102)
T 1x5s_A 10 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSR 54 (102)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcc
Confidence 3558999999999999999999999999999999999987 6654
No 50
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.00 E-value=7.1e-10 Score=69.17 Aligned_cols=42 Identities=17% Similarity=0.412 Sum_probs=38.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
.++|||+|||..+++++|+++|++||.|.+|.|++|+. |++|
T Consensus 25 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~ 67 (114)
T 2cq4_A 25 ARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSK 67 (114)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccC
Confidence 37899999999999999999999999999999999987 7654
No 51
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.99 E-value=4.2e-10 Score=73.37 Aligned_cols=44 Identities=9% Similarity=0.054 Sum_probs=39.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCc---eeEEEEeeCCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGT---IEECTVLKGPDGTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~---i~~~~v~~d~~G~sr 103 (103)
...++|||+|||+++|+++|+++|++||. |.+|.|++|+.|++|
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~sr 88 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQS 88 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCC
Confidence 45689999999999999999999999999 899999999887653
No 52
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=5e-10 Score=67.44 Aligned_cols=42 Identities=29% Similarity=0.410 Sum_probs=38.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
..++|||+|||..+++++|+++|++||.|.++.+++|+. |++
T Consensus 14 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~ 56 (95)
T 2cqc_A 14 PNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRS 56 (95)
T ss_dssp GGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCc
Confidence 448899999999999999999999999999999999987 654
No 53
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=6.2e-10 Score=69.76 Aligned_cols=43 Identities=12% Similarity=0.070 Sum_probs=39.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCce-eEEEEeeCCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTI-EECTVLKGPDGTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i-~~~~v~~d~~G~sr 103 (103)
..++|||+|||+.+|+++|+++|++||.| .+|.|++|+.|++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~ 57 (114)
T 2cpy_A 14 AKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGL 57 (114)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCS
T ss_pred CccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcc
Confidence 45889999999999999999999999999 89999999876654
No 54
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.99 E-value=9.9e-11 Score=71.97 Aligned_cols=42 Identities=14% Similarity=0.203 Sum_probs=39.0
Q ss_pred CceEEEecCCC------CCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSK------QQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~------~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
++.|||+|||. .+++++|+++|++||.|.+|.|++|+. |++|
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~k 54 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTK 54 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEEC
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccc
Confidence 47899999999 999999999999999999999999998 7664
No 55
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=5.6e-10 Score=68.64 Aligned_cols=42 Identities=24% Similarity=0.359 Sum_probs=38.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
.+++|||+|||..+++++|+++|++||.|.+|.+++|+. |++
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~ 64 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYL 64 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCce
Confidence 458899999999999999999999999999999999987 664
No 56
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.99 E-value=6.4e-10 Score=68.78 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=37.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
..++|||+|||+++|+++|+++|++|| +.+|.|++|+.|++|
T Consensus 14 ~~~~l~V~nLp~~~te~~l~~~F~~~G-~~~v~i~~d~~g~~~ 55 (102)
T 1wez_A 14 TGHCVHMRGLPYRATENDIYNFFSPLN-PMRVHIEIGPDGRVT 55 (102)
T ss_dssp SSCEEEEESCCTTCCHHHHHHSSCSCC-CSEEEEEESSSSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcC-ceEEEEEECCCCCEe
Confidence 448999999999999999999999999 559999999877653
No 57
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.99 E-value=6.9e-10 Score=69.24 Aligned_cols=43 Identities=37% Similarity=0.644 Sum_probs=39.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|||+|||..+++++|+++|++||.|.+|.|++|+. |++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~ 56 (115)
T 2dgo_A 13 SNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKS 56 (115)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCc
Confidence 3558999999999999999999999999999999999976 654
No 58
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.98 E-value=7.9e-10 Score=68.07 Aligned_cols=44 Identities=30% Similarity=0.497 Sum_probs=39.5
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 59 ~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
....++|||+|||..+++++|+++|++||.|.++.+++|+.|++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~ 69 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRS 69 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCc
Confidence 34568999999999999999999999999999999999986554
No 59
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.98 E-value=5.5e-10 Score=67.46 Aligned_cols=42 Identities=31% Similarity=0.641 Sum_probs=38.6
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEE-EEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC-TVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~-~v~~d~~-G~sr 103 (103)
.++|||+|||..+++++|+++|++||.|.++ .+++|+. |+++
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~ 48 (96)
T 1x5t_A 5 SSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSK 48 (96)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcC
Confidence 4899999999999999999999999999999 9999976 7654
No 60
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.98 E-value=6.8e-10 Score=68.04 Aligned_cols=42 Identities=24% Similarity=0.435 Sum_probs=38.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcC-CCceeEEEEeeCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAP-FGTIEECTVLKGPDGTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~-~G~i~~~~v~~d~~G~s 102 (103)
..++|||+|||..+|+++|+++|++ ||.|.+|.|++|+.|++
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~ 50 (104)
T 2dhg_A 8 PEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVS 50 (104)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCE
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCc
Confidence 4589999999999999999999999 99999999999976554
No 61
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.98 E-value=4.2e-10 Score=74.66 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=38.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCC--ceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFG--TIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G--~i~~~~v~~d~~-G~sr 103 (103)
..++|||||||+++|+++|+++|++|| .|.+|.|++|+. |++|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~sk 99 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSK 99 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccc
Confidence 458999999999999999999999999 999999999987 8764
No 62
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.97 E-value=1.2e-09 Score=68.90 Aligned_cols=43 Identities=30% Similarity=0.553 Sum_probs=38.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
..++|||+|||.++++++|+++|++||.|.+|.++.|+.|+++
T Consensus 6 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~ 48 (116)
T 2fy1_A 6 HPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSR 48 (116)
T ss_dssp SCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcc
Confidence 4489999999999999999999999999999999998866543
No 63
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=4.5e-10 Score=70.01 Aligned_cols=39 Identities=13% Similarity=0.307 Sum_probs=36.1
Q ss_pred CCceEEEecCCC-CCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~-~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
.+++|||+|||+ .+|+++|+++|++||.|.+|.|++++.
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg 53 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN 53 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSS
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCC
Confidence 458999999999 999999999999999999999998763
No 64
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.97 E-value=1.1e-09 Score=67.20 Aligned_cols=42 Identities=21% Similarity=0.392 Sum_probs=38.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|||+|||+.+++++|+++|++|| |.+|.+++|+. |++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~ 55 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKF 55 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCcc
Confidence 4558999999999999999999999997 99999999987 765
No 65
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.97 E-value=6.6e-10 Score=68.84 Aligned_cols=44 Identities=25% Similarity=0.405 Sum_probs=39.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+++++|+++|++||.|.+|.+++|+. |+++
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 68 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSK 68 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcc
Confidence 3458899999999999999999999999999999999986 7654
No 66
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.96 E-value=6.4e-10 Score=70.31 Aligned_cols=44 Identities=9% Similarity=0.086 Sum_probs=39.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCc---eeEEEEeeCCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGT---IEECTVLKGPDGTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~---i~~~~v~~d~~G~sr 103 (103)
...++|||+|||+++|+++|+++|+.||. |.+|+|++|+.|++|
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~ 61 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQS 61 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCC
Confidence 34588999999999999999999999999 899999999877653
No 67
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.96 E-value=5.9e-10 Score=68.17 Aligned_cols=41 Identities=27% Similarity=0.640 Sum_probs=37.6
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
.++|||+|||..+++++|+++|++||.|.+|.+++|+.|++
T Consensus 9 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~ 49 (102)
T 2xs2_A 9 PNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVS 49 (102)
T ss_dssp EEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCc
Confidence 38899999999999999999999999999999999876544
No 68
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.95 E-value=1.1e-09 Score=70.38 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=40.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+++++|+++|++||.|.+|.+++|+. |++|
T Consensus 44 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~ 88 (129)
T 2kxn_B 44 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSR 88 (129)
T ss_dssp CCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccc
Confidence 4568999999999999999999999999999999999987 7654
No 69
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.95 E-value=2.2e-10 Score=66.27 Aligned_cols=40 Identities=30% Similarity=0.551 Sum_probs=36.9
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 64 ~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+|||+|||..+++++|+++|++||.|.++.+++|+. |+++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 41 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRR 41 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcC
Confidence 589999999999999999999999999999999987 7654
No 70
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=1.4e-09 Score=66.62 Aligned_cols=40 Identities=33% Similarity=0.588 Sum_probs=36.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGT 101 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~ 101 (103)
..++|||+|||..+|+++|+++|++||.|.+|.+++| .|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~ 53 (103)
T 2d9p_A 14 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-GGR 53 (103)
T ss_dssp SCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-SSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCC
Confidence 4589999999999999999999999999999999988 443
No 71
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.95 E-value=7.8e-10 Score=72.12 Aligned_cols=42 Identities=33% Similarity=0.718 Sum_probs=38.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
+++|||+|||.++|+++|+++|++||.|.++.+++|+. |++|
T Consensus 3 ~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~ 45 (167)
T 2cjk_A 3 SCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSR 45 (167)
T ss_dssp GGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCcc
Confidence 38899999999999999999999999999999999987 7764
No 72
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.94 E-value=6.5e-10 Score=68.96 Aligned_cols=44 Identities=16% Similarity=0.074 Sum_probs=39.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCc---eeEEEEeeCCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGT---IEECTVLKGPDGTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~---i~~~~v~~d~~G~sr 103 (103)
...++|||+|||+++|+++|+++|+.||. |.+|.|++|+.|++|
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~ 55 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRR 55 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTC
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEe
Confidence 34589999999999999999999999998 999999999877664
No 73
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=2.5e-09 Score=65.42 Aligned_cols=40 Identities=23% Similarity=0.455 Sum_probs=37.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
...++|||+|||..+++++|+++|++||.|.+|.|++|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~ 52 (103)
T 2cq3_A 13 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 52 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 4559999999999999999999999999999999998865
No 74
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.1e-09 Score=70.04 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=36.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
..+++|||+|||+++|+++|+++|++||.|.+|.|++++
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~k 67 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGK 67 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC
Confidence 345889999999999999999999999999999999875
No 75
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.94 E-value=2.5e-10 Score=68.34 Aligned_cols=41 Identities=20% Similarity=0.515 Sum_probs=38.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
++|||+|||..+++++|+++|++||.|.++.+++|+. |+++
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 43 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPK 43 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcc
Confidence 6799999999999999999999999999999999987 7764
No 76
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.94 E-value=1.2e-09 Score=69.08 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=39.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+|+++|+++|++||.|.+|.|++|+. |+++
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 64 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLK 64 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccc
Confidence 3458999999999999999999999999999999999986 6653
No 77
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.94 E-value=1.2e-09 Score=65.14 Aligned_cols=37 Identities=24% Similarity=0.500 Sum_probs=34.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.++|||+|||+.+++++|+++|++||.|.+|.++++.
T Consensus 5 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~ 41 (88)
T 1wf0_A 5 SSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPF 41 (88)
T ss_dssp CCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCC
Confidence 4899999999999999999999999999999998773
No 78
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.94 E-value=1.9e-09 Score=71.87 Aligned_cols=41 Identities=29% Similarity=0.583 Sum_probs=38.1
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
.++|||+|||..+|+++|+++|++||.|.++.+++|+. |++
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~ 145 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKK 145 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCE
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCc
Confidence 48899999999999999999999999999999999986 654
No 79
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=2e-09 Score=66.78 Aligned_cols=38 Identities=29% Similarity=0.515 Sum_probs=35.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.+++|||+|||+.+++++|+++|++||.|.++.+++++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~k 51 (101)
T 2cq1_A 14 PSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGK 51 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCC
Confidence 45889999999999999999999999999999998875
No 80
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.93 E-value=1.8e-09 Score=68.32 Aligned_cols=44 Identities=30% Similarity=0.457 Sum_probs=39.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
..+++|||+|||..+++++|+++|++||.|.+|.+++|+.|++|
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~ 76 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSL 76 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEe
Confidence 45689999999999999999999999999999999998766543
No 81
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=98.93 E-value=1.7e-09 Score=69.20 Aligned_cols=44 Identities=20% Similarity=0.460 Sum_probs=40.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||..+++++|+++|++||.|.++.+++|+. |++|
T Consensus 61 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~ 105 (140)
T 2ku7_A 61 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHR 105 (140)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCC
T ss_pred CCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcC
Confidence 4568999999999999999999999999999999999977 7654
No 82
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.93 E-value=1.8e-09 Score=66.32 Aligned_cols=42 Identities=19% Similarity=0.413 Sum_probs=37.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC--CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD--GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~--G~s 102 (103)
...++|||+|||+.+++++|+++|++|| |.+|.|++|+. |++
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~ 56 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERL 56 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSB
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCc
Confidence 4458999999999999999999999999 99999999875 544
No 83
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.92 E-value=9.7e-10 Score=69.39 Aligned_cols=41 Identities=24% Similarity=0.443 Sum_probs=38.1
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
++|||+|||..+|+++|+++|++||.|.+|.+++|+. |+++
T Consensus 37 ~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~ 78 (124)
T 2jwn_A 37 RSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPK 78 (124)
T ss_dssp TEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCE
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcc
Confidence 8899999999999999999999999999999999976 7653
No 84
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.92 E-value=1.2e-09 Score=76.51 Aligned_cols=43 Identities=23% Similarity=0.402 Sum_probs=38.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCC--ceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFG--TIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G--~i~~~~v~~d~~-G~sr 103 (103)
..++|||+|||+.+|+++|+++|++|| .|.+|.|++|+. |++|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~sk 112 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSK 112 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccc
Confidence 568899999999999999999999999 999999999987 7764
No 85
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.91 E-value=9.7e-10 Score=67.31 Aligned_cols=43 Identities=21% Similarity=0.441 Sum_probs=37.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC-C-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP-D-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~-~-G~sr 103 (103)
...++|||+|||.++++++|+++|++|| |.+|.+++|+ . |++|
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~ 61 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLK 61 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccC
Confidence 3559999999999999999999999999 9999999998 3 7654
No 86
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.91 E-value=9.3e-10 Score=65.24 Aligned_cols=38 Identities=21% Similarity=0.423 Sum_probs=36.0
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
.++|||+|||.++++++|+++|++||.|.++.+++|+.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~ 41 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM 41 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCC
Confidence 48899999999999999999999999999999998875
No 87
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.91 E-value=9.4e-10 Score=71.98 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=38.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
..++|||+|||+++|+++|+++|++|| |.+|.|++|+.|++|
T Consensus 45 ~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~sr 86 (139)
T 2hgn_A 45 TGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVT 86 (139)
T ss_dssp CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCc
Confidence 458899999999999999999999999 779999999877764
No 88
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.91 E-value=2e-09 Score=64.42 Aligned_cols=38 Identities=13% Similarity=0.106 Sum_probs=35.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
...++|||+|||..+++++|+++|++||.|.++.++++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~ 43 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME 43 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc
Confidence 34589999999999999999999999999999999885
No 89
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.91 E-value=8.1e-10 Score=70.89 Aligned_cols=43 Identities=19% Similarity=0.216 Sum_probs=38.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCce----eEEEEeeCCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTI----EECTVLKGPDGTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i----~~~~v~~d~~G~sr 103 (103)
...+|||+|||+++|+++|+++|++||.| .+|.|++|+.|++|
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~ 68 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPT 68 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEe
Confidence 45899999999999999999999999975 69999999767754
No 90
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.91 E-value=1.9e-09 Score=67.10 Aligned_cols=39 Identities=21% Similarity=0.284 Sum_probs=35.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
..++.|||+|||+.+|+++|+++|++||.|.++.+++++
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~k 57 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKK 57 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCC
Confidence 345889999999999999999999999999999998765
No 91
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.91 E-value=1.2e-09 Score=72.91 Aligned_cols=42 Identities=33% Similarity=0.718 Sum_probs=38.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
..++|||+|||.++|+++|+++|+.||.|.+|.+++|+. |++
T Consensus 12 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~ 54 (196)
T 1l3k_A 12 QLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRS 54 (196)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCc
Confidence 348999999999999999999999999999999999987 765
No 92
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=2.1e-09 Score=66.85 Aligned_cols=43 Identities=19% Similarity=0.377 Sum_probs=38.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCcee--------EEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIE--------ECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~--------~~~v~~d~~-G~sr 103 (103)
..++|||+|||..+++++|+++|++||.|. .|.|++|+. |++|
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~ 65 (113)
T 2cpe_A 14 DNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPK 65 (113)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCee
Confidence 458999999999999999999999999999 699999976 7654
No 93
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.90 E-value=1e-09 Score=68.92 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=38.0
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
..+|||+|||+++|+++|+++|++| .|.+|.|++|+.|++|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~ 56 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNN 56 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCC
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCC
Confidence 4789999999999999999999999 8999999999888765
No 94
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.90 E-value=2.3e-09 Score=66.46 Aligned_cols=38 Identities=13% Similarity=0.219 Sum_probs=35.3
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
...++|||+|||+++++++|+++|++||.|.+|.|++|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~ 50 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 50 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC
Confidence 34589999999999999999999999999999999876
No 95
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.90 E-value=2.6e-09 Score=68.89 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=38.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCcee--EEEEeeCCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIE--ECTVLKGPDGTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~--~~~v~~d~~G~sr 103 (103)
...++|||+|||+++|+++|+++|++| .|. +|.|++|+.|++|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~Grsr 84 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKIT 84 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCc
Confidence 355889999999999999999999999 677 8999999887765
No 96
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.89 E-value=3.5e-09 Score=65.92 Aligned_cols=38 Identities=21% Similarity=0.179 Sum_probs=35.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.+++|||+|||+.+++++|+++|++||.|.++.+++++
T Consensus 14 p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~k 51 (104)
T 1wex_A 14 VSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFK 51 (104)
T ss_dssp CCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCC
Confidence 35889999999999999999999999999999988765
No 97
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=9e-10 Score=67.40 Aligned_cols=40 Identities=20% Similarity=0.534 Sum_probs=37.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
++|||+|||..+++++|+++|++||.|.++.+++|+. |++
T Consensus 9 ~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~ 49 (104)
T 1p1t_A 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKP 49 (104)
T ss_dssp SCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEE
T ss_pred cEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCcc
Confidence 8899999999999999999999999999999999976 654
No 98
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.89 E-value=9.1e-10 Score=70.80 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=39.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|||+|||..+++++|+++|+.||.|.+|.|++|+. |++
T Consensus 40 ~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~ 83 (139)
T 1u6f_A 40 DVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQS 83 (139)
T ss_dssp TTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCc
Confidence 4568999999999999999999999999999999999987 654
No 99
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.89 E-value=1.3e-09 Score=71.36 Aligned_cols=44 Identities=18% Similarity=0.335 Sum_probs=40.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
...++|||+|||+.+++++|+++|++||.|.+|.|++|+. |++|
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~ 112 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESR 112 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccc
Confidence 3468999999999999999999999999999999999986 7764
No 100
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.88 E-value=1.6e-09 Score=66.93 Aligned_cols=43 Identities=16% Similarity=0.342 Sum_probs=38.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCc-eeEEEEe-eCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGT-IEECTVL-KGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~-i~~~~v~-~d~~-G~sr 103 (103)
..++|||+|||..+++++|+++|++||. |.++.++ .|+. |++|
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~ 52 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNR 52 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTC
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcC
Confidence 3489999999999999999999999998 9999998 7776 6654
No 101
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.88 E-value=2.9e-09 Score=69.78 Aligned_cols=43 Identities=23% Similarity=0.295 Sum_probs=39.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|||+|||..+|+++|+++|++||.|.+|.|++|+. |++
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~ 80 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTA 80 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcc
Confidence 3558999999999999999999999999999999999987 654
No 102
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.88 E-value=3e-09 Score=66.32 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=36.5
Q ss_pred CCceEEEecCCCCCCHHHHH---HhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVR---KIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~---~~F~~~G~i~~~~v~~d~~ 99 (103)
..++|||+|||+.+++++|+ ++|++||.|.+|.|++|+.
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~ 55 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTS 55 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCC
Confidence 44889999999999999999 9999999999999999886
No 103
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=1.9e-09 Score=65.48 Aligned_cols=40 Identities=13% Similarity=0.250 Sum_probs=37.0
Q ss_pred CCCceEEEecCCCCCCHHHHH----HhhcCCCceeEEEEeeCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVR----KIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~----~~F~~~G~i~~~~v~~d~~ 99 (103)
...++|||+|||+.+++++|+ ++|++||.|.+|.|++|+.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~ 50 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD 50 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC
Confidence 345899999999999999999 9999999999999998875
No 104
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.87 E-value=7.6e-10 Score=66.71 Aligned_cols=42 Identities=17% Similarity=0.190 Sum_probs=37.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
..++|||+|||+.+++++|+++|++||.|.++.++.|+. |++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~ 56 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMP 56 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCE
Confidence 348999999999999999999999999999999998876 654
No 105
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.87 E-value=4.9e-09 Score=68.54 Aligned_cols=42 Identities=31% Similarity=0.620 Sum_probs=38.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...+|||+|||..+|+++|+++|++||.|.++.+++|+. |++
T Consensus 93 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~ 135 (172)
T 2g4b_A 93 GAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 135 (172)
T ss_dssp TTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSE
T ss_pred CCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCc
Confidence 458899999999999999999999999999999999975 654
No 106
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=3.5e-09 Score=65.88 Aligned_cols=42 Identities=21% Similarity=0.408 Sum_probs=37.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 58 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 58 ~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
.....++|||+|||..+++++|+++|++||.|.+|.+++|+.
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~ 66 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER 66 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC
Confidence 334668999999999999999999999999999999998864
No 107
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.86 E-value=3.8e-09 Score=64.61 Aligned_cols=40 Identities=23% Similarity=0.484 Sum_probs=37.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
...++|||+|||..+++++|+++|++||.|.+|.|++|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 52 (103)
T 2cqi_A 13 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT 52 (103)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCC
Confidence 3558999999999999999999999999999999999865
No 108
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.85 E-value=2e-09 Score=70.39 Aligned_cols=38 Identities=32% Similarity=0.652 Sum_probs=36.4
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
.++|||+|||.++|+++|+++|++||.|.++.+++|+.
T Consensus 3 ~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~ 40 (175)
T 3nmr_A 3 AIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRS 40 (175)
T ss_dssp CEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECS
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC
Confidence 48999999999999999999999999999999999987
No 109
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.85 E-value=5.4e-09 Score=62.58 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=37.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
...++|||+|||+.+++++|+++|++| .|.++.+++|..|++
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~ 49 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNK 49 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCE
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCC
Confidence 345899999999999999999999999 999999999954765
No 110
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.85 E-value=1.2e-09 Score=69.33 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=37.8
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 58 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 58 ~~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
+....++|||+|||+.+|+++|+++|++||.|.++.++.+.. |++
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~ 66 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKA 66 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCC
Confidence 344568999999999999999999999999999966666555 664
No 111
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.85 E-value=3.3e-09 Score=64.26 Aligned_cols=39 Identities=26% Similarity=0.537 Sum_probs=36.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
..++|||+|||+.+++++|+++|++||.|.+|.+++|+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~ 42 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKN 42 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCC
Confidence 348899999999999999999999999999999998764
No 112
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.85 E-value=2.9e-09 Score=66.64 Aligned_cols=38 Identities=26% Similarity=0.479 Sum_probs=34.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
..++|||+|||+.+|+++|+++|++||.|. +.++.++.
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~ 44 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAE 44 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCC
Confidence 458999999999999999999999999999 88887764
No 113
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.84 E-value=1.2e-09 Score=66.29 Aligned_cols=42 Identities=17% Similarity=0.187 Sum_probs=37.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
..++|||+|||+.+++++|+++|++||.|.++.++.++. |++
T Consensus 14 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~ 56 (98)
T 2cqp_A 14 GPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMP 56 (98)
T ss_dssp SSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCe
Confidence 458899999999999999999999999999988888876 654
No 114
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.84 E-value=1.3e-09 Score=65.80 Aligned_cols=40 Identities=15% Similarity=0.342 Sum_probs=36.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEE-EEeeCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC-TVLKGPD 99 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~-~v~~d~~ 99 (103)
...++|||+|||+.+++++|+++|++||.|.+| .+++|+.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~ 53 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE 53 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC
Confidence 456899999999999999999999999999999 5888875
No 115
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.84 E-value=4e-09 Score=63.36 Aligned_cols=38 Identities=29% Similarity=0.599 Sum_probs=34.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
...++|||+|||..+++++|+++|++||.|.++.++++
T Consensus 8 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~~ 45 (92)
T 2dgt_A 8 KASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVKD 45 (92)
T ss_dssp CSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEECC
Confidence 34589999999999999999999999999999998754
No 116
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.83 E-value=1.6e-09 Score=70.09 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=39.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..++|||+|||..+|+++|+++|++||.|.+|.+++|+. |++|
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~ 89 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESR 89 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccc
Confidence 458899999999999999999999999999999999986 6654
No 117
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.83 E-value=4.1e-09 Score=66.75 Aligned_cols=38 Identities=16% Similarity=0.364 Sum_probs=35.1
Q ss_pred CCceEEEecCCCC-CCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQ-QNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~-~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.+++|||+|||++ +++++|+++|++||.|.+|.|++++
T Consensus 24 p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~k 62 (112)
T 1x4f_A 24 LGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMK 62 (112)
T ss_dssp CCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTT
T ss_pred CCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCC
Confidence 4689999999998 9999999999999999999998765
No 118
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=9.9e-09 Score=61.91 Aligned_cols=37 Identities=16% Similarity=0.377 Sum_probs=33.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
..++|||+|||+.+|+++|+++|++||.|.+| +.|+.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~ 43 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKD 43 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCC
Confidence 34799999999999999999999999999987 66655
No 119
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=3.2e-09 Score=63.56 Aligned_cols=38 Identities=32% Similarity=0.552 Sum_probs=34.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
...++|||+|||..+|+++|+++|++||.|.++.++++
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~~ 44 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVKD 44 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEECC
Confidence 34589999999999999999999999999999998764
No 120
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.82 E-value=5e-09 Score=69.48 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=38.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|||+|||..+++++|+++|++||.|..|.|++++. |++
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~ 113 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFS 113 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcE
Confidence 3457899999999999999999999999999999999976 654
No 121
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.81 E-value=9.2e-09 Score=64.04 Aligned_cols=41 Identities=20% Similarity=0.422 Sum_probs=36.8
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 59 ~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
...+++|||+|||..+++++|+++|++||.|.+|.+++|..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~ 45 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPE 45 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCC
Confidence 34458999999999999999999999999999999998754
No 122
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.81 E-value=6.9e-09 Score=61.20 Aligned_cols=39 Identities=33% Similarity=0.494 Sum_probs=35.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
...++|||+|||..+++++|+++|++||.|.++.+++++
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~k 48 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQ 48 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGG
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCC
Confidence 345899999999999999999999999999999998754
No 123
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.81 E-value=3.8e-09 Score=62.12 Aligned_cols=40 Identities=25% Similarity=0.386 Sum_probs=33.9
Q ss_pred ceEEEecCCCCC------CHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 63 KKLFVGMLSKQQ------NEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~------te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
++|||+|||..+ ++++|+++|++||.|.++.+++ ..|++|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-~~g~~~ 47 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-EDGKTK 47 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC-BTTBCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC-CCCcEe
Confidence 789999999999 6799999999999999999873 225543
No 124
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.81 E-value=9.5e-09 Score=66.48 Aligned_cols=43 Identities=26% Similarity=0.384 Sum_probs=39.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
....+|||+|||..+++++|+++|++||.|.++.+++|+. |++
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 128 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSS 128 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCE
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 3568899999999999999999999999999999999976 654
No 125
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.81 E-value=2e-09 Score=70.16 Aligned_cols=42 Identities=26% Similarity=0.551 Sum_probs=38.8
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..+|||+|||..+++++|+++|++||.|.++.+++|+. |+++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~ 129 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSR 129 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccc
Confidence 47899999999999999999999999999999999986 7664
No 126
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.81 E-value=6e-09 Score=67.48 Aligned_cols=40 Identities=28% Similarity=0.634 Sum_probs=37.7
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
++|||+|||..+++++|+++|+.||.|.++.+++|+. |++
T Consensus 3 ~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~ 43 (167)
T 1fxl_A 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQS 43 (167)
T ss_dssp SEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCE
T ss_pred ceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcc
Confidence 8899999999999999999999999999999999985 765
No 127
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.81 E-value=1.5e-08 Score=68.45 Aligned_cols=41 Identities=24% Similarity=0.656 Sum_probs=38.0
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
.++|||+|||..+++++|+++|++||.|.++.+++|+. |++
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKH 166 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCE
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCc
Confidence 48899999999999999999999999999999999976 654
No 128
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=98.79 E-value=6.3e-09 Score=68.00 Aligned_cols=42 Identities=57% Similarity=1.132 Sum_probs=38.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
..++|||+|||..+|+++|+++|++||.|.++.+++|+.|++
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~ 135 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLS 135 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCE
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCE
Confidence 568999999999999999999999999999999999977654
No 129
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.79 E-value=1.2e-08 Score=61.94 Aligned_cols=38 Identities=32% Similarity=0.594 Sum_probs=35.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
..++|||+|||..+++++|+++|++||.|.++.+++++
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~k 51 (99)
T 2cpj_A 14 QRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDK 51 (99)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCC
Confidence 45899999999999999999999999999999998765
No 130
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.78 E-value=4.2e-09 Score=68.17 Aligned_cols=40 Identities=25% Similarity=0.427 Sum_probs=36.4
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
++|||+|||.++|+++|+++|++||.|.++.+++|+.|++
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~ 40 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKN 40 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCC
Confidence 4799999999999999999999999999999999987654
No 131
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.77 E-value=4.9e-09 Score=68.19 Aligned_cols=41 Identities=22% Similarity=0.562 Sum_probs=37.7
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
+++|||+|||.++++++|+++|++||.|.++.+++++. |++
T Consensus 3 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~ 44 (168)
T 1b7f_A 3 NTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYS 44 (168)
T ss_dssp CSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEE
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCcc
Confidence 38899999999999999999999999999999999876 654
No 132
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.77 E-value=1.3e-08 Score=60.82 Aligned_cols=36 Identities=31% Similarity=0.766 Sum_probs=33.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEe
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
...++|||+|||..+++++|+++|++||.|.++.++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~ 41 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII 41 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE
Confidence 455899999999999999999999999999999886
No 133
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=1.3e-08 Score=62.82 Aligned_cols=39 Identities=21% Similarity=0.470 Sum_probs=35.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
...++|||+|||..+|+++|+++|++||.|.+|.+..+.
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~ 58 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRR 58 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC
Confidence 355899999999999999999999999999999997664
No 134
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=1.4e-08 Score=61.55 Aligned_cols=39 Identities=28% Similarity=0.512 Sum_probs=35.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
...++|||+|||..+++++|+++|++||.|.++.++.++
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~ 53 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGD 53 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCC
Confidence 345899999999999999999999999999999988763
No 135
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.75 E-value=3e-08 Score=66.10 Aligned_cols=43 Identities=30% Similarity=0.616 Sum_probs=39.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|||+|||..+++++|+++|++||.|.++.+++|+. |++
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~ 155 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLS 155 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCc
Confidence 4568999999999999999999999999999999999985 654
No 136
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.75 E-value=2.4e-08 Score=64.89 Aligned_cols=43 Identities=26% Similarity=0.504 Sum_probs=39.0
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|||+|||..+++++|+++|++||.|.++.+++|+. |++
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~ 130 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRP 130 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCE
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCc
Confidence 3568999999999999999999999999999999999985 654
No 137
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.75 E-value=5.1e-09 Score=65.74 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=33.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
..++|||+|||+.+++++|+++|++||.|.+|.|+.|
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~ 51 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD 51 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC
Confidence 4589999999999999999999999999999999875
No 138
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.74 E-value=9.4e-09 Score=63.41 Aligned_cols=42 Identities=26% Similarity=0.385 Sum_probs=35.3
Q ss_pred CCceEEEecCCCCC------CHHHHHHhhcCCCceeEEEEeeCCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQ------NEDDVRKIFAPFGTIEECTVLKGPDGTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~------te~~l~~~F~~~G~i~~~~v~~d~~G~sr 103 (103)
.+++|||||||+.+ |+++|+++|++||.|.+|.+++ ..|++|
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-~~g~~~ 61 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-EDGKTK 61 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-BTTBSC
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-CCCCee
Confidence 35899999999999 7899999999999999999883 225543
No 139
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.74 E-value=1.6e-08 Score=61.53 Aligned_cols=39 Identities=21% Similarity=0.369 Sum_probs=35.1
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
...++|||+|||..+++++|+++|++||.|.++.+++.+
T Consensus 25 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~ 63 (101)
T 2la4_A 25 PRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEK 63 (101)
T ss_dssp SSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTT
T ss_pred CCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCC
Confidence 345899999999999999999999999999999987544
No 140
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.74 E-value=1.2e-08 Score=68.90 Aligned_cols=43 Identities=30% Similarity=0.484 Sum_probs=38.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
..+++|||+|||..+++++|+++|++||.|.+|.|+.|+.|++
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~ 128 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRS 128 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCE
Confidence 3568999999999999999999999999999999999876554
No 141
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.73 E-value=1.3e-08 Score=68.80 Aligned_cols=41 Identities=29% Similarity=0.510 Sum_probs=36.5
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
++|||+|||.++|+++|+++|++||.|.+|.+++|+. |+++
T Consensus 29 ~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~ 70 (216)
T 2qfj_A 29 SRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHK 70 (216)
T ss_dssp TEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCC
T ss_pred CEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccC
Confidence 8899999999999999999999999999999999986 6654
No 142
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.73 E-value=2.4e-08 Score=64.63 Aligned_cols=42 Identities=26% Similarity=0.507 Sum_probs=38.5
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...+|||+|||..+++++|+++|++||.|.++.+++|+. |++
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~ 129 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVS 129 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCc
Confidence 458899999999999999999999999999999999985 654
No 143
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=98.72 E-value=1.7e-08 Score=68.88 Aligned_cols=40 Identities=8% Similarity=0.204 Sum_probs=37.3
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
++|||+|||+.+|+++|+++|++||.|.+|++++|..|++
T Consensus 110 ~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~ 149 (193)
T 2voo_A 110 RSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAF 149 (193)
T ss_dssp TEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCE
T ss_pred CEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCc
Confidence 7899999999999999999999999999999999876654
No 144
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.70 E-value=8.2e-09 Score=65.05 Aligned_cols=48 Identities=6% Similarity=-0.073 Sum_probs=35.1
Q ss_pred cccccccCCCCCCceEEEecCCCCCCHHHHHHhhcCCC-ceeEEEEeeCC
Q psy10284 50 WDLIWTCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFG-TIEECTVLKGP 98 (103)
Q Consensus 50 ~~~~~~~~~~~~~~~lfVgnL~~~~te~~l~~~F~~~G-~i~~~~v~~d~ 98 (103)
.+..+... ....++|||+|||+++++++|+++|++|| .|..+.|..++
T Consensus 17 ~~~~~~~~-p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~ 65 (111)
T 2jvr_A 17 RGSHMSKL-PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRD 65 (111)
T ss_dssp ---------CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCS
T ss_pred cchhcCCC-CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCC
Confidence 33455433 33568999999999999999999999999 99999886443
No 145
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.69 E-value=1.5e-08 Score=62.08 Aligned_cols=37 Identities=35% Similarity=0.499 Sum_probs=34.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
..++|||+|||..+|+++|+++|++||.|.+|.++++
T Consensus 10 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~ 46 (103)
T 2dgu_A 10 KVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD 46 (103)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEECSS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC
Confidence 4488999999999999999999999999999998754
No 146
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=98.69 E-value=1.2e-08 Score=66.41 Aligned_cols=39 Identities=28% Similarity=0.606 Sum_probs=36.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
...++|||||||+.+|+++|+++|++||.|.+|.+++|.
T Consensus 71 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~ 109 (150)
T 2i2y_A 71 PLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNP 109 (150)
T ss_dssp TTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCC
Confidence 456899999999999999999999999999999999883
No 147
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.14 E-value=2e-09 Score=67.41 Aligned_cols=42 Identities=21% Similarity=0.396 Sum_probs=37.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeE--------EEEeeCCC-CCCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEE--------CTVLKGPD-GTSK 103 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~--------~~v~~d~~-G~sr 103 (103)
.++|||+|||..+++++|+++|++||.|.+ |.+++|+. |++|
T Consensus 7 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~ 57 (116)
T 2lcw_A 7 NNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLK 57 (116)
Confidence 488999999999999999999999999999 89999876 6553
No 148
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.5e-08 Score=62.59 Aligned_cols=39 Identities=26% Similarity=0.532 Sum_probs=35.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
...++|||+|||..+++++|+++|++||.|.+|.+++++
T Consensus 23 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~ 61 (109)
T 1x4g_A 23 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK 61 (109)
T ss_dssp SSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC
Confidence 345899999999999999999999999999999998874
No 149
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.67 E-value=1.1e-08 Score=62.24 Aligned_cols=35 Identities=17% Similarity=0.474 Sum_probs=33.4
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
++|||+|||..+|+++|+++|++||.|.++.+++|
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~ 35 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN 35 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC
Confidence 47999999999999999999999999999999887
No 150
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.67 E-value=3.2e-08 Score=67.95 Aligned_cols=40 Identities=28% Similarity=0.423 Sum_probs=36.3
Q ss_pred CCceEEEecCC-CCCCHHHHHHhhcCCCceeEEEEeeCCCC
Q psy10284 61 PDKKLFVGMLS-KQQNEDDVRKIFAPFGTIEECTVLKGPDG 100 (103)
Q Consensus 61 ~~~~lfVgnL~-~~~te~~l~~~F~~~G~i~~~~v~~d~~G 100 (103)
.++.|||+||| +.+|+++|+++|++||.|.+|++++++.|
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g 43 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPG 43 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTT
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCC
Confidence 35889999999 89999999999999999999999987643
No 151
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.67 E-value=3.7e-08 Score=69.50 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=38.0
Q ss_pred CCceEEEecCCCCC-CHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQ-NEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~-te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
..++|||+|||..+ |+++|+++|+.||.|.++.|++|..|++
T Consensus 183 ~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~ 225 (284)
T 3smz_A 183 HSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQDGQL 225 (284)
T ss_dssp SCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCE
T ss_pred CccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCc
Confidence 45889999999995 9999999999999999999999977654
No 152
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.65 E-value=4e-08 Score=61.08 Aligned_cols=36 Identities=31% Similarity=0.666 Sum_probs=33.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEe
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
...++|||+|||..+++++|+++|++||.|.++.++
T Consensus 29 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~ 64 (108)
T 2jvo_A 29 LSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL 64 (108)
T ss_dssp CSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE
Confidence 456899999999999999999999999999999886
No 153
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.65 E-value=2e-08 Score=62.67 Aligned_cols=36 Identities=14% Similarity=0.341 Sum_probs=33.4
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
++|||+|||..+++++|+++|++||.|.+|.++.++
T Consensus 11 ~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~ 46 (111)
T 1whx_A 11 TVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGG 46 (111)
T ss_dssp EEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCC
Confidence 789999999999999999999999999999887544
No 154
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=3.8e-08 Score=59.86 Aligned_cols=39 Identities=26% Similarity=0.383 Sum_probs=33.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
..++|||+|||..+++++|+++|++||.| .++++..|++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~ 52 (101)
T 2fc9_A 14 ESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKS 52 (101)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCB
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCE
Confidence 45899999999999999999999999987 5666644554
No 155
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.63 E-value=4.7e-08 Score=59.55 Aligned_cols=38 Identities=26% Similarity=0.545 Sum_probs=33.7
Q ss_pred CCCCCceEEEecCCC-CCCHHHHHHhhcCCCceeEEEEe
Q psy10284 58 PLPPDKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 58 ~~~~~~~lfVgnL~~-~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
+...+++|||+|||+ .+++++|+++|++||.|.++.+.
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~ 56 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 56 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 334669999999998 99999999999999999999874
No 156
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.63 E-value=4.1e-08 Score=59.41 Aligned_cols=35 Identities=31% Similarity=0.732 Sum_probs=32.6
Q ss_pred CCceEEEecCCC-CCCHHHHHHhhcCCCceeEEEEe
Q psy10284 61 PDKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 61 ~~~~lfVgnL~~-~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
..++|||+|||+ .+++++|+++|++||.|.++.+.
T Consensus 9 ~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~ 44 (96)
T 2kvi_A 9 PKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK 44 (96)
T ss_dssp CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe
Confidence 458999999998 99999999999999999999875
No 157
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.63 E-value=7.1e-08 Score=59.64 Aligned_cols=35 Identities=29% Similarity=0.716 Sum_probs=32.4
Q ss_pred CCCceEEEecCCCC-CCHHHHHHhhcCCCceeEEEE
Q psy10284 60 PPDKKLFVGMLSKQ-QNEDDVRKIFAPFGTIEECTV 94 (103)
Q Consensus 60 ~~~~~lfVgnL~~~-~te~~l~~~F~~~G~i~~~~v 94 (103)
...++|||+|||+. +++++|+++|++||.|.+|.+
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i 60 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV 60 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE
Confidence 34589999999999 999999999999999999987
No 158
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.62 E-value=3.2e-08 Score=59.97 Aligned_cols=38 Identities=13% Similarity=0.314 Sum_probs=33.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
..++|||+|||+.+++++|+++|++||.|. +.++.++.
T Consensus 18 ~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~ 55 (97)
T 2e5j_A 18 LAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGP 55 (97)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETT
T ss_pred CCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCC
Confidence 458999999999999999999999999997 66766543
No 159
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.61 E-value=3.1e-08 Score=60.45 Aligned_cols=38 Identities=13% Similarity=0.153 Sum_probs=34.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.+.-||||||++.+||++|+++|.+||+|.++.+...+
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~k 43 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQ 43 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTT
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCC
Confidence 34679999999999999999999999999999987754
No 160
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.61 E-value=4.2e-08 Score=74.44 Aligned_cols=43 Identities=23% Similarity=0.444 Sum_probs=39.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..++|||+|||+.+|+++|+++|++||.|..|.|+.|+. |+++
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~k 144 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPR 144 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCcc
Confidence 457999999999999999999999999999999999976 6653
No 161
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.61 E-value=4.1e-08 Score=59.16 Aligned_cols=37 Identities=24% Similarity=0.616 Sum_probs=33.5
Q ss_pred CCCceEEEecCCCCCCHHHHH----HhhcCCCceeEEEEee
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVR----KIFAPFGTIEECTVLK 96 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~----~~F~~~G~i~~~~v~~ 96 (103)
..+++|||+|||..+++++|+ ++|++||.|.++.+++
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~ 46 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR 46 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc
Confidence 345899999999999999999 9999999999998763
No 162
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.60 E-value=6.7e-08 Score=66.06 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=36.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
...+|||+|||+.+|+++|+++|++||.|.+|.|++|+.
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~ 140 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN 140 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT
T ss_pred ccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC
Confidence 457899999999999999999999999999999999864
No 163
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.1e-08 Score=63.64 Aligned_cols=31 Identities=32% Similarity=0.524 Sum_probs=28.6
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCcee
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIE 90 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~ 90 (103)
...++|||+|||..+|+++|+++|++||.|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~ 53 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKK 53 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcc
Confidence 4568999999999999999999999999994
No 164
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.60 E-value=2.6e-09 Score=65.19 Aligned_cols=42 Identities=14% Similarity=0.282 Sum_probs=35.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~sr 103 (103)
..++|||+|||+.+|+++|+++|++||.|.+ .+++|+. |++|
T Consensus 16 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~ 58 (101)
T 1fj7_A 16 TPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNR 58 (101)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcC
Confidence 4589999999999999999999999999988 6666655 5543
No 165
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.6e-08 Score=64.24 Aligned_cols=38 Identities=13% Similarity=0.257 Sum_probs=33.9
Q ss_pred CCceEEE--ecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFV--GMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfV--gnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.+.+||| |||++.+++++|+++|++||.|.++.++.++
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~r 63 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNK 63 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTC
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCC
Confidence 3578999 7799999999999999999999999887654
No 166
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.58 E-value=1e-07 Score=57.84 Aligned_cols=36 Identities=25% Similarity=0.388 Sum_probs=32.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCC--CceeEEEEee
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPF--GTIEECTVLK 96 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~--G~i~~~~v~~ 96 (103)
..++|||+|||+.+++++|+++|++| |.|.++.+++
T Consensus 14 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~~ 51 (99)
T 2cpd_A 14 SVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIR 51 (99)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEECS
T ss_pred CcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEeC
Confidence 45899999999999999999999999 9999998754
No 167
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.56 E-value=4e-08 Score=58.01 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=34.3
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCC----C-------ceeEEEEeeCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPF----G-------TIEECTVLKGP 98 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~----G-------~i~~~~v~~d~ 98 (103)
.++|||+|||+.+++++|+++|++| | .|.++.+++++
T Consensus 6 ~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~k 53 (87)
T 2hzc_A 6 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK 53 (87)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSS
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCC
Confidence 4899999999999999999999999 8 99999988765
No 168
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.54 E-value=1.4e-07 Score=60.63 Aligned_cols=36 Identities=14% Similarity=0.133 Sum_probs=32.6
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEee
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~ 96 (103)
....|||+||++.+|+++|+++|++||.|.+|.|..
T Consensus 24 ~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~ 59 (124)
T 2e5i_A 24 KVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFK 59 (124)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEE
T ss_pred cEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEe
Confidence 346689999999999999999999999999998865
No 169
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.53 E-value=1.1e-07 Score=61.08 Aligned_cols=38 Identities=11% Similarity=0.240 Sum_probs=32.7
Q ss_pred CCCceEEEecCCCCCCHHHHH----HhhcCCCceeEEEEeeC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVR----KIFAPFGTIEECTVLKG 97 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~----~~F~~~G~i~~~~v~~d 97 (103)
...++|||||||+.+++++|+ ++|++||.|.+|.+.++
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~ 68 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLS 68 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccC
Confidence 346889999999999999876 69999999999987653
No 170
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.50 E-value=1.5e-07 Score=60.99 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=33.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.-.+|||+||++.+|+++|+++|++||.|.+|.+..+.
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~ 64 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 64 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEET
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCC
Confidence 34679999999999999999999999999999887643
No 171
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=7.9e-08 Score=57.60 Aligned_cols=35 Identities=26% Similarity=0.416 Sum_probs=30.4
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCc-eeEEEE
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGT-IEECTV 94 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~-i~~~~v 94 (103)
...++|||+|||..+|+++|+++|++||. |..+.+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~ 41 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVL 41 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEE
Confidence 34589999999999999999999999999 665554
No 172
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.48 E-value=1.1e-07 Score=63.94 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=34.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
....+|||+||++.+|+++|+++|++||.|.++.|..++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~ 82 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKN 82 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCC
Confidence 345789999999999999999999999999999987554
No 173
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.46 E-value=1.9e-07 Score=66.07 Aligned_cols=43 Identities=23% Similarity=0.466 Sum_probs=38.2
Q ss_pred CCceEEEecCCCC-CCHHHHHHhhcCCCceeEEEEeeCCC--CCCC
Q psy10284 61 PDKKLFVGMLSKQ-QNEDDVRKIFAPFGTIEECTVLKGPD--GTSK 103 (103)
Q Consensus 61 ~~~~lfVgnL~~~-~te~~l~~~F~~~G~i~~~~v~~d~~--G~sr 103 (103)
..++|||+|||.. +|+++|+++|++||.|.++.+++|.. |+++
T Consensus 209 ~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~ 254 (292)
T 2ghp_A 209 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNN 254 (292)
T ss_dssp TTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCC
T ss_pred CCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCc
Confidence 4588999999999 99999999999999999999999876 6553
No 174
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.46 E-value=3.7e-07 Score=59.80 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=28.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEE
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~ 92 (103)
.++|||+|||..+|+++|+++|++||.|..+
T Consensus 99 ~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~ 129 (175)
T 1fje_B 99 ARTLLAKNLSFNITEDELKEVFEDALEIRLV 129 (175)
T ss_dssp GGEEEEESCCSSCCHHHHHHHCTTCSEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe
Confidence 4889999999999999999999999988766
No 175
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.46 E-value=1.4e-07 Score=66.42 Aligned_cols=42 Identities=24% Similarity=0.368 Sum_probs=38.4
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G~s 102 (103)
...+|||+|||..+|+++|+++|+.||.|.+|.+++|..|++
T Consensus 95 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~ 136 (261)
T 3sde_A 95 HGAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRA 136 (261)
T ss_dssp CSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCE
T ss_pred cCCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCc
Confidence 457999999999999999999999999999999999965764
No 176
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.46 E-value=1.4e-07 Score=63.25 Aligned_cols=38 Identities=16% Similarity=0.352 Sum_probs=35.5
Q ss_pred CceEEEecCCC-CCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 62 DKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 62 ~~~lfVgnL~~-~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
+++|||+|||. .+++++|+++|++||.|.+|.+++|+.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~ 41 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK 41 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCS
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCC
Confidence 48899999999 999999999999999999999998864
No 177
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.46 E-value=1.2e-07 Score=65.40 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=37.6
Q ss_pred CCCCceEEEecCCC-CCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 59 LPPDKKLFVGMLSK-QQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 59 ~~~~~~lfVgnL~~-~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
...+++|||+|||. .+++++|+++|++||.|.+|.+++|+.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~ 72 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKK 72 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCC
Confidence 34678999999999 999999999999999999999998874
No 178
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.45 E-value=1.5e-08 Score=65.52 Aligned_cols=34 Identities=24% Similarity=0.428 Sum_probs=30.6
Q ss_pred CCCCceEEEecCCCCCCHHHHHHhhcCCCceeEE
Q psy10284 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92 (103)
Q Consensus 59 ~~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~ 92 (103)
...+++|||+|||+.+|+++|+++|++||.|.+|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~ 75 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSE 75 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccc
Confidence 3456899999999999999999999999998774
No 179
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.44 E-value=3.1e-07 Score=55.76 Aligned_cols=40 Identities=28% Similarity=0.475 Sum_probs=33.8
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
...++|||+|||..+++++|+++|+.|+ ++.+++|+. |++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~ 53 (102)
T 2fc8_A 13 QPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSS 53 (102)
T ss_dssp CCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSE
T ss_pred CCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCc
Confidence 3558999999999999999999999874 677888876 654
No 180
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.43 E-value=2.6e-07 Score=65.09 Aligned_cols=42 Identities=26% Similarity=0.527 Sum_probs=38.8
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC-CCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTS 102 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~-G~s 102 (103)
..++|||+|||..+|+++|+++|++||.|.++.+++|+. |++
T Consensus 94 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~ 136 (284)
T 3smz_A 94 TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQS 136 (284)
T ss_dssp CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCE
T ss_pred CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCcc
Confidence 458999999999999999999999999999999999986 765
No 181
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.41 E-value=4.3e-07 Score=63.92 Aligned_cols=37 Identities=24% Similarity=0.634 Sum_probs=33.6
Q ss_pred CCceEEEecCCCCCCHHHHH----HhhcCCCceeEEEEeeC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVR----KIFAPFGTIEECTVLKG 97 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~----~~F~~~G~i~~~~v~~d 97 (103)
..++|||+|||..+|+++|+ ++|++||.|.+|.++++
T Consensus 8 ~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~ 48 (282)
T 3pgw_A 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRS 48 (282)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCC
Confidence 45899999999999999977 89999999999998863
No 182
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.40 E-value=2.7e-07 Score=65.29 Aligned_cols=41 Identities=24% Similarity=0.249 Sum_probs=36.2
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCCC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~G 100 (103)
...++|||+|||..+|+++|+++|+.||.|.+|.+++|+.|
T Consensus 39 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~ 79 (292)
T 2ghp_A 39 RELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKK 79 (292)
T ss_dssp ---CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCC
Confidence 45689999999999999999999999999999999998763
No 183
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.36 E-value=3.7e-07 Score=64.21 Aligned_cols=38 Identities=26% Similarity=0.529 Sum_probs=35.2
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
..++|||+|||.++|+++|+++|+.||.|.+|.+.+++
T Consensus 21 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~k 58 (261)
T 3sde_A 21 QRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRDR 58 (261)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETTT
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCCC
Confidence 44889999999999999999999999999999998765
No 184
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.36 E-value=5.1e-07 Score=53.67 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=31.0
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCCCceeEEEEe
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~ 95 (103)
.++|||+|||+.+++++|+++|++| .|.++.+.
T Consensus 5 ~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~ 37 (88)
T 1wg1_A 5 SSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD 37 (88)
T ss_dssp CCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe
Confidence 4889999999999999999999999 99999885
No 185
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.36 E-value=2.4e-07 Score=63.58 Aligned_cols=38 Identities=18% Similarity=0.254 Sum_probs=34.9
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCce--eEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTI--EECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i--~~~~v~~d~ 98 (103)
.+.+|||+|||+++|+++|+++|++||.| .+++++.|+
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~ 161 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK 161 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC
Confidence 35789999999999999999999999999 899988876
No 186
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.33 E-value=1.4e-06 Score=52.57 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=31.5
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
...++|||+|+ .+|+++|+++|++||.|.+|.+...
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~ 48 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP 48 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETT
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCC
Confidence 34589999996 8999999999999999999988643
No 187
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.30 E-value=3.5e-07 Score=64.74 Aligned_cols=39 Identities=23% Similarity=0.447 Sum_probs=35.2
Q ss_pred CCCceEEEecCCCCC---------CHHHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQQ---------NEDDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~---------te~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
...++||||||+..+ ++++|+++|++||.|.+|+|+.++
T Consensus 132 ~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~k 179 (240)
T 3u1l_A 132 KKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESK 179 (240)
T ss_dssp CCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGG
T ss_pred cCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCC
Confidence 356899999999998 799999999999999999998765
No 188
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.30 E-value=9.5e-07 Score=62.16 Aligned_cols=39 Identities=26% Similarity=0.462 Sum_probs=36.1
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
..++|||+|||..+++++|+++|++||.|.++.++.++.
T Consensus 206 ~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~~~ 244 (282)
T 3pgw_A 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244 (282)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecCCC
Confidence 457899999999999999999999999999999998763
No 189
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.26 E-value=5.2e-07 Score=54.17 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=29.3
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCCceeEE
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~ 92 (103)
..++|||+|||..+++++|+++|++||.|..+
T Consensus 15 ~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~ 46 (96)
T 1fjc_A 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLV 46 (96)
T ss_dssp GGGEEEEESCCSSCCHHHHHHHHCSEEEECCE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe
Confidence 34899999999999999999999999988766
No 190
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=98.26 E-value=7.6e-06 Score=56.30 Aligned_cols=37 Identities=16% Similarity=0.432 Sum_probs=34.0
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCC-ceeEEEEeeC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFG-TIEECTVLKG 97 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G-~i~~~~v~~d 97 (103)
..++|||+|||..+++++|+++|++|| .|.++.++.+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~ 187 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK 187 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC
Confidence 468999999999999999999999999 9999998653
No 191
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=98.25 E-value=5.6e-06 Score=55.27 Aligned_cols=38 Identities=16% Similarity=0.414 Sum_probs=34.7
Q ss_pred CCceEEEecCCCCCCHHHHHHhhcCCC-ceeEEEEeeCC
Q psy10284 61 PDKKLFVGMLSKQQNEDDVRKIFAPFG-TIEECTVLKGP 98 (103)
Q Consensus 61 ~~~~lfVgnL~~~~te~~l~~~F~~~G-~i~~~~v~~d~ 98 (103)
.++.|||+|||..+++++|+++|++|| .|.++.++.+.
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~ 157 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 157 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC
Confidence 468899999999999999999999999 99999987644
No 192
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.20 E-value=1.6e-06 Score=55.52 Aligned_cols=39 Identities=15% Similarity=0.174 Sum_probs=36.3
Q ss_pred CCceEEEecCCCC-CCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQ-QNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~-~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
.++-|||+||+.. +++++|+++|++||+|..|.+++|..
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~ 56 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK 56 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC
Confidence 4588999999999 99999999999999999999988875
No 193
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.14 E-value=3.3e-06 Score=53.40 Aligned_cols=36 Identities=22% Similarity=0.292 Sum_probs=31.7
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
...++|||+|+ .+|+++|+++|++||.|.+|.+...
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~ 72 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPP 72 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETT
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCC
Confidence 45689999996 6999999999999999999988743
No 194
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.07 E-value=2.2e-06 Score=63.46 Aligned_cols=38 Identities=11% Similarity=0.193 Sum_probs=32.9
Q ss_pred CCCceEEEec--CCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 60 PPDKKLFVGM--LSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 60 ~~~~~lfVgn--L~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
..+.+||||| |++.+|+++|+++|++||+|.++.+..+
T Consensus 16 ~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~ 55 (345)
T 3tht_A 16 YATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN 55 (345)
T ss_dssp SCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTT
T ss_pred CCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC
Confidence 3458999998 6899999999999999999999877543
No 195
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.07 E-value=2.6e-07 Score=60.53 Aligned_cols=32 Identities=13% Similarity=0.271 Sum_probs=28.9
Q ss_pred CCCceEEEecCCCCCCHHHHHHhhcCCCceeE
Q psy10284 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE 91 (103)
Q Consensus 60 ~~~~~lfVgnL~~~~te~~l~~~F~~~G~i~~ 91 (103)
...++|||+|||..+|+++|+++|++||.+..
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~ 42 (175)
T 1fje_B 11 TTPFNLFIGNLNPNKSVAELKVAISELFAKND 42 (175)
T ss_dssp SSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce
Confidence 34589999999999999999999999998766
No 196
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.04 E-value=2.6e-06 Score=55.34 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=32.7
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCC----C-------ceeEEEEeeCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPF----G-------TIEECTVLKGP 98 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~----G-------~i~~~~v~~d~ 98 (103)
.++|||+|||.++|+++|+++|++| | .|.++.+.+++
T Consensus 4 ~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~~~~ 51 (172)
T 2g4b_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK 51 (172)
T ss_dssp GGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEETTT
T ss_pred ccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEecCCC
Confidence 3899999999999999999999999 7 78888776654
No 197
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=97.89 E-value=1e-05 Score=53.62 Aligned_cols=37 Identities=16% Similarity=0.356 Sum_probs=31.2
Q ss_pred CceEEEecCCCCCCHHHHHHhhcCC----C-------ceeEEEEeeCC
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAPF----G-------TIEECTVLKGP 98 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~~----G-------~i~~~~v~~d~ 98 (103)
+++|||+|||.++|+++|+++|++| | .|.++.+.+++
T Consensus 4 ~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~~~~~ 51 (198)
T 2yh0_A 4 ARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDK 51 (198)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEEETTT
T ss_pred eeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEecCCC
Confidence 4899999999999999999999999 5 66777665443
No 198
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.86 E-value=2e-05 Score=48.56 Aligned_cols=30 Identities=17% Similarity=0.293 Sum_probs=26.1
Q ss_pred ceEEEecCCCCCCHHH----HHHhhcCC-CceeEE
Q psy10284 63 KKLFVGMLSKQQNEDD----VRKIFAPF-GTIEEC 92 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~----l~~~F~~~-G~i~~~ 92 (103)
+-|||+|||+.+++++ |+++|++| |+|.++
T Consensus 10 T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V 44 (96)
T 2diu_A 10 TLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI 44 (96)
T ss_dssp EEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE
Confidence 4499999999999987 55899999 599887
No 199
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=97.78 E-value=5.7e-05 Score=46.64 Aligned_cols=38 Identities=13% Similarity=0.385 Sum_probs=31.8
Q ss_pred CceEEEecCCC-----CCCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 62 DKKLFVGMLSK-----QQNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 62 ~~~lfVgnL~~-----~~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
++.|++.|+.. +.++++|++.|++||.|.+|.|++|+.
T Consensus 8 s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~ 50 (105)
T 2pe8_A 8 TKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPG 50 (105)
T ss_dssp CSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSS
T ss_pred CCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCC
Confidence 47799999973 237899999999999999999999864
No 200
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=97.26 E-value=2e-05 Score=48.59 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=29.2
Q ss_pred EecCCCCCCHHHHHHhh------------cCCCceeEEEEeeCCCCCC
Q psy10284 67 VGMLSKQQNEDDVRKIF------------APFGTIEECTVLKGPDGTS 102 (103)
Q Consensus 67 VgnL~~~~te~~l~~~F------------~~~G~i~~~~v~~d~~G~s 102 (103)
+.|||+.+++++|++.| ++||.|.+|.|++|+.|++
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~ 67 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHL 67 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSS
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCc
Confidence 56788888888877776 9999999999999876554
No 201
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.08 E-value=0.0011 Score=40.78 Aligned_cols=38 Identities=13% Similarity=0.273 Sum_probs=29.8
Q ss_pred CCceEEEecCCCCCC-----------HHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 61 PDKKLFVGMLSKQQN-----------EDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 61 ~~~~lfVgnL~~~~t-----------e~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
.++.|+|.||....+ +++|+++|++||.|.+|.| .|+.
T Consensus 14 ~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~ 62 (112)
T 2dit_A 14 HERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRH 62 (112)
T ss_dssp SCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTC
T ss_pred CceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCC
Confidence 347899999954433 5799999999999999955 5553
No 202
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.91 E-value=0.00096 Score=40.84 Aligned_cols=25 Identities=8% Similarity=0.235 Sum_probs=22.7
Q ss_pred CCCCHHHHHHhhcCCCceeEEEEee
Q psy10284 72 KQQNEDDVRKIFAPFGTIEECTVLK 96 (103)
Q Consensus 72 ~~~te~~l~~~F~~~G~i~~~~v~~ 96 (103)
..+++++|+++|++||.|.+|.|+.
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~ 51 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSS 51 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEES
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEcc
Confidence 4689999999999999999999874
No 203
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=96.62 E-value=0.002 Score=39.45 Aligned_cols=37 Identities=16% Similarity=0.271 Sum_probs=29.3
Q ss_pred ceEEEecC--CCCCC--------HHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 63 KKLFVGML--SKQQN--------EDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 63 ~~lfVgnL--~~~~t--------e~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
+-|.+.|+ |.... +++|++.|++||.|.++.|++|+.
T Consensus 6 ~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~ 52 (105)
T 3v4m_A 6 EVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVD 52 (105)
T ss_dssp SEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBT
T ss_pred eEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCC
Confidence 56777887 33333 368999999999999999999875
No 204
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=96.34 E-value=0.0045 Score=38.85 Aligned_cols=38 Identities=11% Similarity=0.262 Sum_probs=30.4
Q ss_pred CceEEEecCCCC-----CCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 62 DKKLFVGMLSKQ-----QNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 62 ~~~lfVgnL~~~-----~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
++.|++.|+-.. --+++|++.|++||.|.+|.|++|+.
T Consensus 20 s~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~ 62 (118)
T 3ue2_A 20 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQ 62 (118)
T ss_dssp CCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCC
Confidence 377899998421 23589999999999999999998864
No 205
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=95.38 E-value=0.011 Score=36.76 Aligned_cols=23 Identities=26% Similarity=0.198 Sum_probs=20.3
Q ss_pred HHHHHhhcCCCceeEEEEeeCCC
Q psy10284 77 DDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 77 ~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
++|++.|++||.|.++.|.++..
T Consensus 32 edl~~~f~kfG~V~~v~i~~~~~ 54 (114)
T 3s6e_A 32 DDVIEECNKHGGVIHIYVDKNSA 54 (114)
T ss_dssp HHHHHHHTTTTCCSEEEECTTCT
T ss_pred HHHHHHHhccCCEEEEEEecCCC
Confidence 58899999999999999987764
No 206
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=94.99 E-value=0.0069 Score=37.18 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=12.6
Q ss_pred CCCCCCceeEEecCCcccchhhhhccccccccCCCcCCCcccccccCCCCCCceEEEecCCCCCCHHH
Q psy10284 11 TPLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQNEDD 78 (103)
Q Consensus 11 ~~~~~~~~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfVgnL~~~~te~~ 78 (103)
...++|++|.|.....+..+...... ......++||+|||.++|++.
T Consensus 67 ~~~~~g~~i~V~~a~~~~~~~~~~~~---------------------~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 67 GMLLNDRKVFVGRFKSRKEREAELGA---------------------RAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp TCEETTEECEEEESSCCCC-------------------------------------------------
T ss_pred CCEECCEEEEEEECCCcccccccccc---------------------ccCCCCceEeCCCCCCccccc
Confidence 35577788888776655443322110 011236899999999999863
No 207
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=94.34 E-value=0.061 Score=32.50 Aligned_cols=36 Identities=19% Similarity=0.333 Sum_probs=26.6
Q ss_pred ceEEEecCCC----CCCH----HHHHHhhcCCCceeEEEEeeCC
Q psy10284 63 KKLFVGMLSK----QQNE----DDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 63 ~~lfVgnL~~----~~te----~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
.+++|...+. ..-+ .+|.+.|++||+|..++++.|+
T Consensus 8 ~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~ 51 (91)
T 2dnr_A 8 GTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK 51 (91)
T ss_dssp CEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS
T ss_pred CeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence 5667766551 2223 5789999999999999998875
No 208
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=90.70 E-value=0.3 Score=30.70 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=36.9
Q ss_pred CCCCCceEEEecCCCCCCHHHHHHhhcCC-----CceeEEEEeeCCCC
Q psy10284 58 PLPPDKKLFVGMLSKQQNEDDVRKIFAPF-----GTIEECTVLKGPDG 100 (103)
Q Consensus 58 ~~~~~~~lfVgnL~~~~te~~l~~~F~~~-----G~i~~~~v~~d~~G 100 (103)
++...+.+-+-|||..+++..++.+.+.+ |.+..+.+..|..|
T Consensus 17 ~~~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~G 64 (117)
T 2l9w_A 17 SKELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNG 64 (117)
T ss_dssp TTTTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTE
T ss_pred CccCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCc
Confidence 33445788899999999999999999999 99999998888754
No 209
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=89.59 E-value=0.24 Score=30.10 Aligned_cols=39 Identities=23% Similarity=0.396 Sum_probs=29.1
Q ss_pred CCCceEEEecCCCC------CCH---HHHHHhhcCCCceeEEEEeeCC
Q psy10284 60 PPDKKLFVGMLSKQ------QNE---DDVRKIFAPFGTIEECTVLKGP 98 (103)
Q Consensus 60 ~~~~~lfVgnL~~~------~te---~~l~~~F~~~G~i~~~~v~~d~ 98 (103)
+...+++|..++.. .++ .+|.+.|++||+|..++++.|+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~ 60 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ 60 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc
Confidence 34477888877643 232 4688999999999999988775
No 210
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=89.33 E-value=0.61 Score=28.54 Aligned_cols=27 Identities=22% Similarity=0.498 Sum_probs=22.6
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCce
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTI 89 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i 89 (103)
..+|+-+.|.+..-.||.++|+.||.|
T Consensus 16 ~HVf~l~FP~ewKt~DI~~lFs~fggv 42 (100)
T 1whv_A 16 DHVLHVTFPKEWKTSDLYQLFSAFGNI 42 (100)
T ss_dssp CSEEEEECCTTCCHHHHHHHHTTTCSC
T ss_pred CeEEEEeCChhhhhHHHHHHhhccCCE
Confidence 445555999999999999999999954
No 211
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=88.16 E-value=1.3 Score=26.44 Aligned_cols=34 Identities=9% Similarity=0.235 Sum_probs=29.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEee
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~ 96 (103)
+|+-|.+||..+|++++.+.++.+..+....-..
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~ 35 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFS 35 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeC
Confidence 6899999999999999999999998776655443
No 212
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=84.70 E-value=0.71 Score=30.90 Aligned_cols=26 Identities=15% Similarity=0.350 Sum_probs=21.9
Q ss_pred CCHHHHHHhhcCCCceeEEEEeeCCC
Q psy10284 74 QNEDDVRKIFAPFGTIEECTVLKGPD 99 (103)
Q Consensus 74 ~te~~l~~~F~~~G~i~~~~v~~d~~ 99 (103)
-.++++++.|++||.|.++.|.++..
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~ 166 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQ 166 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEEC
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCC
Confidence 35678999999999999999986654
No 213
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=83.46 E-value=1.5 Score=26.87 Aligned_cols=25 Identities=20% Similarity=0.478 Sum_probs=21.2
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCc
Q psy10284 64 KLFVGMLSKQQNEDDVRKIFAPFGT 88 (103)
Q Consensus 64 ~lfVgnL~~~~te~~l~~~F~~~G~ 88 (103)
.+|+-+.|.+..-.||.++|+.||.
T Consensus 7 HV~~l~FP~ewKt~Di~~lFs~fgg 31 (101)
T 3ctr_A 7 HVLHVTFPKEWKTSDLYQLFSAFGN 31 (101)
T ss_dssp EEEEEECCTTCCHHHHHHHTTTSEE
T ss_pred eEEEEeCChhhhhHHHHHHHhccCC
Confidence 3444499999999999999999994
No 214
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=83.44 E-value=0.66 Score=35.50 Aligned_cols=33 Identities=15% Similarity=0.363 Sum_probs=26.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEee
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~ 96 (103)
+.+||. .|...++.+|.++|++||.|.++..-.
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~ 86 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYE 86 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEEC
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEc
Confidence 779996 699999999999999999999985443
No 215
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=82.38 E-value=3.5 Score=25.32 Aligned_cols=33 Identities=12% Similarity=0.016 Sum_probs=27.9
Q ss_pred CceEEEecCCCCCCHHHHHHhhcC----C-CceeEEEE
Q psy10284 62 DKKLFVGMLSKQQNEDDVRKIFAP----F-GTIEECTV 94 (103)
Q Consensus 62 ~~~lfVgnL~~~~te~~l~~~F~~----~-G~i~~~~v 94 (103)
..+|.|.|||..+.++.|.-+|++ . |+|.++..
T Consensus 8 ~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~ 45 (104)
T 2dhx_A 8 GVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQR 45 (104)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEE
T ss_pred ccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEE
Confidence 378999999999999999999998 2 57777654
No 216
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=68.13 E-value=3.8 Score=24.75 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=23.2
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCce
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTI 89 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i 89 (103)
-||-|..||..+||+++.+.++.+-++
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~ 36 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAH 36 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSE
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCcc
Confidence 689999999999999999888876543
No 217
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=44.91 E-value=21 Score=22.23 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=24.8
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEE
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 94 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v 94 (103)
+-|-|-+.|... -..+...|++||+|.+...
T Consensus 25 ~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~ 55 (119)
T 1wwh_A 25 TWVTVFGFPQAS-ASYILLQFAQYGNILKHVM 55 (119)
T ss_dssp GEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE
T ss_pred CEEEEECCCHHH-HHHHHHHHHhhCcEEEecc
Confidence 568888887774 4667788999999998764
No 218
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=42.77 E-value=23 Score=24.68 Aligned_cols=34 Identities=18% Similarity=0.211 Sum_probs=28.2
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
.-..|+|+|+..+..-+..+++. +.+.+..+|.-
T Consensus 111 ~~~iv~NlPy~iss~il~~ll~~-~~~~~~~lm~Q 144 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVTRLLKT-GRFARLVFLVQ 144 (271)
T ss_dssp TEEEEEEECSSCCHHHHHHHHHH-CCEEEEEEEEE
T ss_pred ccEEEecCcccccHHHHHHHhcC-CCCCEEEEEee
Confidence 45788999999999999999887 77777777653
No 219
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=40.43 E-value=19 Score=21.91 Aligned_cols=33 Identities=9% Similarity=0.197 Sum_probs=25.0
Q ss_pred ceEEEecCCCCC-CH----HHHHHhhcCCCceeEEEEe
Q psy10284 63 KKLFVGMLSKQQ-NE----DDVRKIFAPFGTIEECTVL 95 (103)
Q Consensus 63 ~~lfVgnL~~~~-te----~~l~~~F~~~G~i~~~~v~ 95 (103)
..|+|.||+.++ +. +.++++|.+|+.+......
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~l 43 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYF 43 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEE
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeec
Confidence 679999998755 22 4678999999987775543
No 220
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=40.20 E-value=10 Score=26.52 Aligned_cols=35 Identities=6% Similarity=-0.007 Sum_probs=29.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
.-..|+|||+.++..-+..+++....+..+.+|.-
T Consensus 115 ~~~vv~NlPY~iss~il~~ll~~~~~~~~~~~m~Q 149 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLFHLMSFAPVVIDQHFMLQ 149 (279)
T ss_dssp CEEEEEECCHHHHHHHHHHHGGGGGGEEEEEEEEE
T ss_pred ceEEEEccCccccHHHHHHHHhccCCccEEEEEee
Confidence 45688999999999999999987777888777653
No 221
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A
Probab=33.91 E-value=42 Score=22.91 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=26.0
Q ss_pred ceEEEecCCCCCCHHHHHHhhcCCCceeEEEEee
Q psy10284 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96 (103)
Q Consensus 63 ~~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~ 96 (103)
.-+.|+|+|+..+...+..+++....+..+.+|.
T Consensus 91 ~~~vvsNlPY~i~~~il~~ll~~~~~~~~~~~m~ 124 (252)
T 1qyr_A 91 PLRVFGNLPYNISTPLMFHLFSYTDAIADMHFML 124 (252)
T ss_dssp CEEEEEECCTTTHHHHHHHHHTTGGGEEEEEEEE
T ss_pred ceEEEECCCCCccHHHHHHHHhcCCCcceEEEEE
Confidence 3478899999999998888887655566665553
No 222
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0
Probab=33.69 E-value=13 Score=25.69 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=28.0
Q ss_pred EEEecCCCCCCHHHHHHhhcCCCceeEEEEeeC
Q psy10284 65 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG 97 (103)
Q Consensus 65 lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~d 97 (103)
..|+|+|+.++..-+..+++..+.+....+|.-
T Consensus 99 ~vv~NlPY~is~~il~~ll~~~~~~~~~~lm~Q 131 (255)
T 3tqs_A 99 RVVGNLPYNISTPLLFHLFSQIHCIEDMHFMLQ 131 (255)
T ss_dssp EEEEECCHHHHHHHHHHHHHTGGGEEEEEEEEE
T ss_pred EEEecCCcccCHHHHHHHHhCCCChheEEEEEe
Confidence 378999999999999999998778888877754
No 223
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*
Probab=32.50 E-value=33 Score=23.37 Aligned_cols=33 Identities=9% Similarity=-0.040 Sum_probs=26.6
Q ss_pred eEEEecCCCCCCHHHHHHhhcCCCceeEEEEee
Q psy10284 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96 (103)
Q Consensus 64 ~lfVgnL~~~~te~~l~~~F~~~G~i~~~~v~~ 96 (103)
-+.|+|+|+..+..-+..+++....+....+|.
T Consensus 97 ~~vv~NlPy~i~~~il~~ll~~~~~~~~~~~m~ 129 (249)
T 3ftd_A 97 LKVVGNLPYNVASLIIENTVYNKDCVPLAVFMV 129 (249)
T ss_dssp EEEEEECCTTTHHHHHHHHHHTGGGCSEEEEEE
T ss_pred cEEEEECchhccHHHHHHHHhcCCCCceEEEEE
Confidence 377899999999999999988766666766654
No 224
>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24
Probab=27.86 E-value=28 Score=25.39 Aligned_cols=21 Identities=14% Similarity=0.131 Sum_probs=18.0
Q ss_pred EEEecCCCCCCHHHHHHhhcC
Q psy10284 65 LFVGMLSKQQNEDDVRKIFAP 85 (103)
Q Consensus 65 lfVgnL~~~~te~~l~~~F~~ 85 (103)
..|||||++++..-+..+++.
T Consensus 145 ~vvaNLPYnIstpil~~ll~~ 165 (353)
T 1i4w_A 145 LTVANVTGEGSEGLIMQWLSC 165 (353)
T ss_dssp EEEEECCSTTHHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHHHHh
Confidence 688999999999888887764
No 225
>1ytr_A Bacteriocin plantaricin A; antibiotic, pheromone, amphipathic helix, micelle; NMR {Synthetic}
Probab=22.74 E-value=51 Score=14.53 Aligned_cols=11 Identities=36% Similarity=0.899 Sum_probs=9.1
Q ss_pred HHHHHhhcCCC
Q psy10284 77 DDVRKIFAPFG 87 (103)
Q Consensus 77 ~~l~~~F~~~G 87 (103)
.+++.+|.++|
T Consensus 15 kqvkklfkkwg 25 (26)
T 1ytr_A 15 KQVKKLFKKWG 25 (26)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHHcC
Confidence 67888998887
Done!