Your job contains 1 sequence.
>psy10284
MLPLDLIWTCTPLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLP
PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK
The BLAST search returned 10 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy10284
(103 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|A1L544 - symbol:TNRC4 "Trinucleotide repeat con... 185 3.7e-17 2
UNIPROTKB|F1NXF6 - symbol:BRUNOL6 "Uncharacterized protei... 191 5.7e-16 2
UNIPROTKB|Q5SZQ7 - symbol:CELF3 "CUGBP Elav-like family m... 185 8.5e-16 2
UNIPROTKB|Q08E07 - symbol:CELF3 "CUGBP Elav-like family m... 185 1.4e-15 2
UNIPROTKB|Q5SZQ8 - symbol:CELF3 "CUGBP Elav-like family m... 185 1.4e-15 2
MGI|MGI:1926034 - symbol:Celf3 "CUGBP, Elav-like family m... 185 1.4e-15 2
RGD|1563168 - symbol:Celf3 "CUGBP, Elav-like family membe... 185 1.8e-15 2
ZFIN|ZDB-GENE-110408-50 - symbol:celf3b "cugbp, Elav-like... 182 3.1e-15 2
UNIPROTKB|Q9BZC1 - symbol:CELF4 "CUGBP Elav-like family m... 184 4.5e-15 2
UNIPROTKB|Q5NVC8 - symbol:CELF4 "CUGBP Elav-like family m... 184 4.5e-15 2
MGI|MGI:1932407 - symbol:Celf4 "CUGBP, Elav-like family m... 184 4.5e-15 2
UNIPROTKB|Q91579 - symbol:tnrc4-a "CUGBP Elav-like family... 177 1.0e-14 2
UNIPROTKB|E2RJG5 - symbol:CELF6 "Uncharacterized protein"... 176 2.0e-14 2
FB|FBgn0264001 - symbol:bru-3 "bruno-3" species:7227 "Dro... 191 2.1e-14 1
RGD|1565016 - symbol:Celf5 "CUGBP, Elav-like family membe... 172 2.3e-14 2
UNIPROTKB|K7EJK3 - symbol:CELF4 "CUGBP Elav-like family m... 184 2.3e-14 1
UNIPROTKB|B4DHA8 - symbol:CELF4 "CUGBP Elav-like family m... 176 2.6e-14 2
MGI|MGI:1923433 - symbol:Celf6 "CUGBP, Elav-like family m... 176 2.7e-14 2
RGD|1310451 - symbol:Celf6 "CUGBP, Elav-like family membe... 176 2.7e-14 2
UNIPROTKB|Q4R535 - symbol:CELF4 "CUGBP Elav-like family m... 176 3.0e-14 2
UNIPROTKB|A6H776 - symbol:BRUNOL4 "Uncharacterized protei... 176 3.1e-14 2
UNIPROTKB|Q96J87 - symbol:CELF6 "CUGBP Elav-like family m... 176 3.2e-14 2
UNIPROTKB|E1B8K2 - symbol:CELF6 "Uncharacterized protein"... 176 3.3e-14 2
UNIPROTKB|F1SHM1 - symbol:CELF6 "Uncharacterized protein"... 176 3.3e-14 2
UNIPROTKB|F1PXQ8 - symbol:CELF5 "Uncharacterized protein"... 172 7.1e-14 2
UNIPROTKB|Q8N6W0 - symbol:CELF5 "CUGBP Elav-like family m... 172 7.1e-14 2
UNIPROTKB|F1MD42 - symbol:F1MD42 "Uncharacterized protein... 172 7.3e-14 2
UNIPROTKB|Q7ZWM3 - symbol:tnrc4-b "CUGBP Elav-like family... 169 7.7e-14 2
ZFIN|ZDB-GENE-040718-300 - symbol:celf4 "CUGBP, Elav-like... 173 9.1e-14 2
UNIPROTKB|F1NYP4 - symbol:CELF4 "Uncharacterized protein"... 183 1.0e-13 1
UNIPROTKB|F1ST15 - symbol:CELF3 "Uncharacterized protein"... 185 1.2e-13 1
UNIPROTKB|H0Y623 - symbol:CELF3 "CUGBP Elav-like family m... 185 1.2e-13 1
UNIPROTKB|F1P5J4 - symbol:BRUNOL6 "Uncharacterized protei... 182 1.2e-13 1
UNIPROTKB|E2RGA8 - symbol:CELF3 "Uncharacterized protein"... 185 1.6e-13 1
UNIPROTKB|K7EPX2 - symbol:CELF4 "CUGBP Elav-like family m... 176 1.6e-13 1
UNIPROTKB|K7EQ97 - symbol:CELF4 "CUGBP Elav-like family m... 176 1.6e-13 1
ZFIN|ZDB-GENE-000501-2 - symbol:celf3a "cugbp, Elav-like ... 169 1.8e-13 2
UNIPROTKB|H9L0T2 - symbol:H9L0T2 "Uncharacterized protein... 175 2.1e-13 1
ZFIN|ZDB-GENE-050208-746 - symbol:celf5 "cugbp, Elav-like... 170 3.9e-13 2
WB|WBGene00006807 - symbol:unc-75 species:6239 "Caenorhab... 156 5.4e-13 2
UNIPROTKB|F1SAI1 - symbol:CELF4 "Uncharacterized protein"... 176 6.5e-13 1
UNIPROTKB|B4DFI3 - symbol:CELF5 "CUGBP Elav-like family m... 172 1.1e-12 1
UNIPROTKB|F1M3I9 - symbol:Brunol4 "Protein Brunol4" speci... 170 1.6e-12 1
UNIPROTKB|F1S8E8 - symbol:CELF5 "Uncharacterized protein"... 172 2.4e-12 1
RGD|1307630 - symbol:Celf4 "CUGBP, Elav-like family membe... 170 2.7e-12 1
UNIPROTKB|F1NZY6 - symbol:CELF2 "CUGBP Elav-like family m... 156 3.8e-12 2
UNIPROTKB|E1C045 - symbol:CELF2 "CUGBP Elav-like family m... 156 3.9e-12 2
UNIPROTKB|F1P674 - symbol:CELF2 "Uncharacterized protein"... 156 3.9e-12 2
UNIPROTKB|F1P017 - symbol:CELF2 "CUGBP Elav-like family m... 156 4.1e-12 2
UNIPROTKB|Q5VZZ6 - symbol:CELF2 "CUGBP Elav-like family m... 156 4.2e-12 2
UNIPROTKB|O95319 - symbol:CELF2 "CUGBP Elav-like family m... 156 4.5e-12 2
MGI|MGI:1338822 - symbol:Celf2 "CUGBP, Elav-like family m... 156 4.5e-12 2
RGD|68347 - symbol:Celf2 "CUGBP, Elav-like family member ... 156 4.5e-12 2
UNIPROTKB|E9PC62 - symbol:CELF2 "CUGBP Elav-like family m... 156 4.9e-12 2
UNIPROTKB|Q7T2T1 - symbol:CELF2 "CUGBP Elav-like family m... 156 7.7e-12 2
ZFIN|ZDB-GENE-000501-1 - symbol:celf1 "cugbp, Elav-like f... 155 8.6e-12 2
ZFIN|ZDB-GENE-030826-35 - symbol:celf2 "cugbp, Elav-like ... 153 1.2e-11 2
UNIPROTKB|F1P311 - symbol:CELF1 "CUGBP Elav-like family m... 157 5.9e-11 1
UNIPROTKB|F1P022 - symbol:CELF2 "CUGBP Elav-like family m... 156 7.4e-11 1
UNIPROTKB|E1BIM7 - symbol:LOC100851458 "Uncharacterized p... 156 1.2e-10 1
UNIPROTKB|B4DIB6 - symbol:CELF2 "cDNA FLJ51739, highly si... 156 1.2e-10 1
UNIPROTKB|F1ND14 - symbol:CELF1 "CUGBP Elav-like family m... 157 1.4e-10 1
UNIPROTKB|Q5F3T7 - symbol:CELF1 "CUGBP Elav-like family m... 157 1.4e-10 1
WB|WBGene00001340 - symbol:etr-1 species:6239 "Caenorhabd... 132 1.5e-10 2
UNIPROTKB|A7MB95 - symbol:CUGBP1 "Uncharacterized protein... 143 2.5e-10 2
UNIPROTKB|Q92879 - symbol:CELF1 "CUGBP Elav-like family m... 143 2.5e-10 2
MGI|MGI:1342295 - symbol:Celf1 "CUGBP, Elav-like family m... 143 2.5e-10 2
RGD|1307721 - symbol:Celf1 "CUGBP, Elav-like family membe... 143 2.5e-10 2
UNIPROTKB|Q4QQT3 - symbol:Celf1 "CUGBP Elav-like family m... 143 2.5e-10 2
UNIPROTKB|E2R8F6 - symbol:CELF1 "Uncharacterized protein"... 143 3.0e-10 2
UNIPROTKB|G5EA30 - symbol:CELF1 "CUG triplet repeat, RNA ... 143 3.0e-10 2
FB|FBgn0000114 - symbol:aret "arrest" species:7227 "Droso... 136 8.6e-10 2
UNIPROTKB|Q5R995 - symbol:CELF1 "CUGBP Elav-like family m... 138 1.0e-09 2
ZFIN|ZDB-GENE-070912-150 - symbol:si:ch211-168n8.1 "si:ch... 137 2.2e-09 1
UNIPROTKB|B3KWE6 - symbol:BRUNOL6 "cDNA FLJ42868 fis, clo... 143 2.3e-09 1
UNIPROTKB|K7ES14 - symbol:CELF5 "CUGBP Elav-like family m... 139 4.4e-09 1
FB|FBgn0262475 - symbol:bru-2 "bruno-2" species:7227 "Dro... 127 8.1e-08 2
TAIR|locus:2825067 - symbol:BRN2 "Bruno-like 2" species:3... 105 1.3e-06 2
TAIR|locus:2139340 - symbol:RBP-DR1 "RNA-binding protein-... 101 1.4e-06 2
DICTYBASE|DDB_G0291486 - symbol:DDB_G0291486 "putative sp... 108 2.7e-05 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 92 4.4e-05 2
UNIPROTKB|J3KTC1 - symbol:MSI2 "RNA-binding protein Musas... 95 6.3e-05 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 90 7.0e-05 2
UNIPROTKB|Q7ZYE9 - symbol:hnrnpab "Hnrpab-prov protein" s... 78 0.00020 2
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 84 0.00025 2
UNIPROTKB|Q6K271 - symbol:P0415D04.46-1 "FCA" species:399... 83 0.00030 2
UNIPROTKB|Q6WQT6 - symbol:Q6WQT6 "Flowering time control ... 83 0.00030 2
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 85 0.00033 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 85 0.00036 2
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 75 0.00047 2
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 82 0.00050 2
MGI|MGI:2655711 - symbol:Rbm28 "RNA binding motif protein... 78 0.00050 2
UNIPROTKB|J3QKT5 - symbol:MSI2 "RNA-binding protein Musas... 86 0.00057 1
UNIPROTKB|D4A5K7 - symbol:Rbm28 "RNA binding motif protei... 76 0.00069 2
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 77 0.00069 2
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 77 0.00072 2
RGD|1311336 - symbol:Rbm28 "RNA binding motif protein 28"... 76 0.00081 2
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 80 0.00085 2
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 89 0.00093 2
>UNIPROTKB|A1L544 [details] [associations]
symbol:TNRC4 "Trinucleotide repeat containing 4"
species:9913 "Bos taurus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 UniGene:Bt.18201 HOVERGEN:HBG002295
EMBL:DAAA02007247 EMBL:BT029831 IPI:IPI00906974 SMR:A1L544
Ensembl:ENSBTAT00000056432 HOGENOM:HOG000220928 Uniprot:A1L544
Length = 139
Score = 185 (70.2 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 135
Score = 39 (18.8 bits), Expect = 3.7e-17, Sum P(2) = 3.7e-17
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 15 PDK-KLFVGMLSKQQNEDD 32
PD KLFVG + + E D
Sbjct: 4 PDAIKLFVGQIPRHLEEKD 22
>UNIPROTKB|F1NXF6 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00560000076837 GO:GO:0000381
EMBL:AADN02051058 EMBL:AADN02051059 IPI:IPI00819127
Ensembl:ENSGALT00000040113 OMA:PIHEINI Uniprot:F1NXF6
Length = 476
Score = 191 (72.3 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 35/46 (76%), Positives = 41/46 (89%)
Query: 59 LPP-DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
LPP D+KLFVGML KQQ+EDDVR++F PFG IEECT+L+GPDG SK
Sbjct: 138 LPPEDRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASK 183
Score = 84 (34.6 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 17/21 (80%), Positives = 19/21 (90%)
Query: 13 LPP-DKKLFVGMLSKQQNEDD 32
LPP D+KLFVGML KQQ+EDD
Sbjct: 138 LPPEDRKLFVGMLGKQQSEDD 158
Score = 42 (19.8 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI 89
P LF+ L ++ + ++ ++F PFG +
Sbjct: 408 PEGCNLFIYHLPQEFGDAELTQMFLPFGFV 437
Score = 37 (18.1 bits), Expect = 5.7e-16, Sum P(2) = 5.7e-16
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 18 KLFVGMLSKQQNEDD 32
KLFVG + + E D
Sbjct: 49 KLFVGQIPRNLEESD 63
>UNIPROTKB|Q5SZQ7 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CH471121
HOVERGEN:HBG107646 KO:K13207 HOGENOM:HOG000004754 CTD:11189
EMBL:AL589765 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO GeneID:11189
KEGG:hsa:11189 HGNC:HGNC:11967 PharmGKB:PA36654 GenomeRNAi:11189
NextBio:42591 IPI:IPI00386736 RefSeq:NP_001166120.1 SMR:Q5SZQ7
STRING:Q5SZQ7 Ensembl:ENST00000290585 UCSC:uc009wmy.3
EvolutionaryTrace:Q5SZQ7 Uniprot:Q5SZQ7
Length = 415
Score = 185 (70.2 bits), Expect = 8.5e-16, Sum P(2) = 8.5e-16
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 135
Score = 39 (18.8 bits), Expect = 8.5e-16, Sum P(2) = 8.5e-16
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 15 PDK-KLFVGMLSKQQNEDD 32
PD KLFVG + + E D
Sbjct: 4 PDAIKLFVGQIPRHLEEKD 22
>UNIPROTKB|Q08E07 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9913
"Bos taurus" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0003723 GO:GO:0030317 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 EMBL:BC123480 IPI:IPI00690976
RefSeq:NP_001070313.1 UniGene:Bt.18201 ProteinModelPortal:Q08E07
SMR:Q08E07 PRIDE:Q08E07 Ensembl:ENSBTAT00000033848 GeneID:513347
KEGG:bta:513347 CTD:11189 InParanoid:Q08E07 OMA:HSAYLNP
NextBio:20870823 ArrayExpress:Q08E07 GO:GO:0000381 Uniprot:Q08E07
Length = 461
Score = 185 (70.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 135
Score = 39 (18.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 15 PDK-KLFVGMLSKQQNEDD 32
PD KLFVG + + E D
Sbjct: 4 PDAIKLFVGQIPRHLEEKD 22
>UNIPROTKB|Q5SZQ8 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IEA] [GO:0030317 "sperm
motility" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0003723 "RNA binding"
evidence=IMP] [GO:0008380 "RNA splicing" evidence=IMP] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0007283
GO:GO:0030317 GO:GO:0000398 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 CTD:11189 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF329264 EMBL:AY165003 EMBL:AL589765
EMBL:BC052491 EMBL:BC068008 EMBL:BC104758 EMBL:BC143226 EMBL:U80746
EMBL:AF284423 IPI:IPI00852836 IPI:IPI00852895 IPI:IPI00852999
RefSeq:NP_009116.3 UniGene:Hs.26047 PDB:2DNO PDBsum:2DNO
ProteinModelPortal:Q5SZQ8 SMR:Q5SZQ8 IntAct:Q5SZQ8
MINT:MINT-4866187 STRING:Q5SZQ8 PhosphoSite:Q5SZQ8 DMDM:74756184
PRIDE:Q5SZQ8 Ensembl:ENST00000290583 GeneID:11189 KEGG:hsa:11189
UCSC:uc001eyr.3 UCSC:uc001eys.2 UCSC:uc009wmx.2
GeneCards:GC01M151674 HGNC:HGNC:11967 HPA:HPA006292 MIM:612678
neXtProt:NX_Q5SZQ8 PharmGKB:PA36654 PhylomeDB:Q5SZQ8
EvolutionaryTrace:Q5SZQ8 GenomeRNAi:11189 NextBio:42591
ArrayExpress:Q5SZQ8 Bgee:Q5SZQ8 CleanEx:HS_TNRC4
Genevestigator:Q5SZQ8 Uniprot:Q5SZQ8
Length = 465
Score = 185 (70.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 135
Score = 39 (18.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 15 PDK-KLFVGMLSKQQNEDD 32
PD KLFVG + + E D
Sbjct: 4 PDAIKLFVGQIPRHLEEKD 22
>MGI|MGI:1926034 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0007283 "spermatogenesis" evidence=IMP] [GO:0008380 "RNA
splicing" evidence=ISO] [GO:0030317 "sperm motility" evidence=IMP]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1926034 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
CTD:11189 OMA:HSAYLNP GO:GO:0000381 OrthoDB:EOG4RJG30 EMBL:AY165052
EMBL:BC057553 IPI:IPI00461847 IPI:IPI00854025 RefSeq:NP_766022.1
UniGene:Mm.44292 ProteinModelPortal:Q8CIN6 SMR:Q8CIN6 STRING:Q8CIN6
PhosphoSite:Q8CIN6 PaxDb:Q8CIN6 PRIDE:Q8CIN6
Ensembl:ENSMUST00000029784 GeneID:78784 KEGG:mmu:78784
UCSC:uc008qgl.1 UCSC:uc008qgm.1 InParanoid:Q8CIN6 NextBio:349492
Bgee:Q8CIN6 CleanEx:MM_TNRC4 Genevestigator:Q8CIN6 Uniprot:Q8CIN6
Length = 465
Score = 185 (70.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 93 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 134
Score = 39 (18.8 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 15 PDK-KLFVGMLSKQQNEDD 32
PD KLFVG + + E D
Sbjct: 4 PDAIKLFVGQIPRHLEEKD 22
>RGD|1563168 [details] [associations]
symbol:Celf3 "CUGBP, Elav-like family member 3" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0007283
"spermatogenesis" evidence=ISO] [GO:0008150 "biological_process"
evidence=ND] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0030317
"sperm motility" evidence=ISO] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1563168 GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0007283 GO:GO:0003723 GO:GO:0030317
GO:GO:0048026 GeneTree:ENSGT00560000076837 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AC133978 IPI:IPI00204869
ProteinModelPortal:D4A916 Ensembl:ENSRNOT00000028324
UCSC:RGD:1563168 Uniprot:D4A916
Length = 494
Score = 185 (70.2 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 135
Score = 39 (18.8 bits), Expect = 1.8e-15, Sum P(2) = 1.8e-15
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 15 PDK-KLFVGMLSKQQNEDD 32
PD KLFVG + + E D
Sbjct: 4 PDAIKLFVGQIPRHLEEKD 22
>ZFIN|ZDB-GENE-110408-50 [details] [associations]
symbol:celf3b "cugbp, Elav-like family member 3b"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-110408-50 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX005277 EMBL:CABZ01052818 EMBL:CABZ01052819 EMBL:CABZ01052820
EMBL:CABZ01052821 EMBL:CABZ01052822 IPI:IPI00506596
Ensembl:ENSDART00000024206 Uniprot:E7F293
Length = 442
Score = 182 (69.1 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ+++DVRKIF PFG I+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQSDEDVRKIFEPFGGIDECTVLRGPDGTSK 135
Score = 38 (18.4 bits), Expect = 3.1e-15, Sum P(2) = 3.1e-15
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 15 PDK-KLFVGMLSKQQNEDD 32
PD KLF+G + + E D
Sbjct: 4 PDAIKLFIGQIPRNLEEKD 22
>UNIPROTKB|Q9BZC1 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0006376 "mRNA splice
site selection" evidence=IEA] [GO:0090394 "negative regulation of
excitatory postsynaptic membrane potential" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0042835 "BRE binding"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0007281 "germ cell development"
evidence=NAS] [GO:0009790 "embryo development" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IDA] [GO:0000380 "alternative mRNA
splicing, via spliceosome" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0009790 GO:GO:0007281
GO:GO:0000900 GO:GO:0000380 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 eggNOG:NOG251494 GO:GO:0042835 GO:GO:0006376
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 EMBL:AF329265
EMBL:AK074596 EMBL:AB209774 EMBL:BC001946 EMBL:BC004167
EMBL:BC045711 EMBL:AF248650 EMBL:AF248651 IPI:IPI00024603
IPI:IPI00384535 IPI:IPI00853216 IPI:IPI00853277 IPI:IPI00853444
RefSeq:NP_001020258.1 RefSeq:NP_001020259.1 RefSeq:NP_001020260.1
RefSeq:NP_064565.1 UniGene:Hs.435976 UniGene:Hs.600908 PDB:2DGP
PDB:2DNK PDBsum:2DGP PDBsum:2DNK ProteinModelPortal:Q9BZC1
SMR:Q9BZC1 STRING:Q9BZC1 PhosphoSite:Q9BZC1 DMDM:74761348
PRIDE:Q9BZC1 Ensembl:ENST00000334919 Ensembl:ENST00000361795
Ensembl:ENST00000412753 Ensembl:ENST00000420428 GeneID:56853
KEGG:hsa:56853 UCSC:uc002lae.2 UCSC:uc002laf.2 UCSC:uc002lag.2
UCSC:uc021uix.1 UCSC:uc021uiy.1 GeneCards:GC18M034823
HGNC:HGNC:14015 HPA:HPA037986 MIM:612679 neXtProt:NX_Q9BZC1
PharmGKB:PA25428 InParanoid:Q9BZC1 OMA:EDSEKNG PhylomeDB:Q9BZC1
ChiTaRS:CELF4 EvolutionaryTrace:Q9BZC1 GenomeRNAi:56853
NextBio:62266 ArrayExpress:Q9BZC1 Bgee:Q9BZC1 CleanEx:HS_BRUNOL4
Genevestigator:Q9BZC1 Uniprot:Q9BZC1
Length = 486
Score = 184 (69.8 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 55 TCTPLPP--DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
+C PP D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 142 SCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 192
Score = 84 (34.6 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 9 TCTPLPP--DKKLFVGMLSKQQNEDD 32
+C PP D+KLFVGML+KQQ+EDD
Sbjct: 142 SCLRQPPSQDRKLFVGMLNKQQSEDD 167
Score = 42 (19.8 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI 89
P LF+ L ++ + ++ ++F PFG +
Sbjct: 418 PEGCNLFIYHLPQEFGDAELMQMFLPFGFV 447
Score = 36 (17.7 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLF+G + + +E D
Sbjct: 55 KLFIGQIPRNLDEKD 69
>UNIPROTKB|Q5NVC8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9601
"Pongo abelii" [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 CTD:56853 EMBL:CR859631
EMBL:CR860590 EMBL:CR926110 RefSeq:NP_001127577.1
RefSeq:NP_001128833.1 UniGene:Pab.18713 ProteinModelPortal:Q5NVC8
SMR:Q5NVC8 PRIDE:Q5NVC8 GeneID:100174655 KEGG:pon:100174655
InParanoid:Q5NVC8 Uniprot:Q5NVC8
Length = 486
Score = 184 (69.8 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 55 TCTPLPP--DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
+C PP D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 142 SCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 192
Score = 84 (34.6 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 9 TCTPLPP--DKKLFVGMLSKQQNEDD 32
+C PP D+KLFVGML+KQQ+EDD
Sbjct: 142 SCLRQPPSQDRKLFVGMLNKQQSEDD 167
Score = 42 (19.8 bits), Expect = 5.4e-05, Sum P(2) = 5.4e-05
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI 89
P LF+ L ++ + ++ ++F PFG +
Sbjct: 418 PEGCNLFIYHLPQEFGDAELMQMFLPFGFV 447
Score = 36 (17.7 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLF+G + + +E D
Sbjct: 55 KLFIGQIPRNLDEKD 69
>MGI|MGI:1932407 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0048026
"positive regulation of mRNA splicing, via spliceosome"
evidence=ISO] [GO:0090394 "negative regulation of excitatory
postsynaptic membrane potential" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1932407 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724 GO:GO:0000380
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
GO:GO:0000381 OrthoDB:EOG4RJG30 CTD:56853 ChiTaRS:CELF4
EMBL:AF515450 EMBL:AK044072 EMBL:AK048427 EMBL:AK051458
EMBL:AC121094 EMBL:AC144938 EMBL:AC153142 EMBL:BC048405
EMBL:BC052744 EMBL:AF314173 IPI:IPI00222845 IPI:IPI00330819
IPI:IPI00470036 IPI:IPI00757837 IPI:IPI00853687 IPI:IPI00853900
IPI:IPI00853926 RefSeq:NP_001139764.1 RefSeq:NP_001139765.1
RefSeq:NP_001139766.1 RefSeq:NP_001139767.1 RefSeq:NP_001167545.1
RefSeq:NP_573458.2 UniGene:Mm.266435 ProteinModelPortal:Q7TSY6
SMR:Q7TSY6 STRING:Q7TSY6 PhosphoSite:Q7TSY6 PaxDb:Q7TSY6
PRIDE:Q7TSY6 Ensembl:ENSMUST00000025117 Ensembl:ENSMUST00000115816
GeneID:108013 KEGG:mmu:108013 UCSC:uc008ehk.2 UCSC:uc008ehl.2
UCSC:uc012ban.1 UCSC:uc012bao.1 UCSC:uc012bap.1 UCSC:uc012baq.1
OMA:SAMESIN NextBio:359881 Bgee:Q7TSY6 CleanEx:MM_BRUNOL4
Genevestigator:Q7TSY6 GO:GO:0090394 Uniprot:Q7TSY6
Length = 486
Score = 184 (69.8 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 55 TCTPLPP--DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
+C PP D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 142 SCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 192
Score = 84 (34.6 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 9 TCTPLPP--DKKLFVGMLSKQQNEDD 32
+C PP D+KLFVGML+KQQ+EDD
Sbjct: 142 SCLRQPPSQDRKLFVGMLNKQQSEDD 167
Score = 36 (17.7 bits), Expect = 4.5e-15, Sum P(2) = 4.5e-15
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLF+G + + +E D
Sbjct: 55 KLFIGQIPRNLDEKD 69
Score = 36 (17.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 7/30 (23%), Positives = 16/30 (53%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI 89
P L + L ++ + ++ ++F PFG +
Sbjct: 418 PEGCNLLIYHLPQEFGDAELMQMFLPFGFV 447
>UNIPROTKB|Q91579 [details] [associations]
symbol:tnrc4-a "CUGBP Elav-like family member 3-A"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:U16800 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BC057704 EMBL:BC072134
RefSeq:NP_001079936.1 UniGene:Xl.986 HSSP:Q92879
ProteinModelPortal:Q91579 SMR:Q91579 GeneID:379627 KEGG:xla:379627
CTD:379627 Xenbase:XB-GENE-6255196 HOVERGEN:HBG107646 KO:K13207
GO:GO:0048026 Uniprot:Q91579
Length = 462
Score = 177 (67.4 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ ++DVR++F PFG I+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQTDEDVRRMFEPFGNIDECTVLRGPDGTSK 135
Score = 39 (18.8 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 15 PDK-KLFVGMLSKQQNEDD 32
PD KLF+G + + +E D
Sbjct: 4 PDAIKLFIGQIPRNLDEKD 22
>UNIPROTKB|E2RJG5 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:MQHVAAF EMBL:AAEX03016277
EMBL:AAEX03016278 Ensembl:ENSCAFT00000028069 Uniprot:E2RJG5
Length = 427
Score = 176 (67.0 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ E+DVR++F PFG IEECTVL+ PDGTSK
Sbjct: 94 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 135
Score = 36 (17.7 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLFVG + + +E D
Sbjct: 8 KLFVGQIPRGLDEQD 22
>FB|FBgn0264001 [details] [associations]
symbol:bru-3 "bruno-3" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISA]
[GO:0043234 "protein complex" evidence=IDA] [GO:0042803 "protein
homodimerization activity" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0043234 GO:GO:0042803 EMBL:AE014296 GO:GO:0017148
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 FlyBase:FBgn0264001
UniGene:Dm.13624 GeneID:39527 KEGG:dme:Dmel_CG12478 CTD:39527
GenomeRNAi:39527 NextBio:814113 EMBL:AY060398 RefSeq:NP_729923.1
SMR:Q9VU91 IntAct:Q9VU91 MINT:MINT-899406 STRING:Q9VU91
EnsemblMetazoa:FBtr0330343 UCSC:CG12478-RA InParanoid:Q9VU91
OMA:HALNGEY Uniprot:Q9VU91
Length = 422
Score = 191 (72.3 bits), Expect = 2.1e-14, P = 2.1e-14
Identities = 35/42 (83%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGMLSKQQ EDDVR+IF PFGTIEECT+L+GPDG SK
Sbjct: 54 DRKLFVGMLSKQQTEDDVRQIFHPFGTIEECTILRGPDGASK 95
Score = 82 (33.9 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 17/24 (70%), Positives = 19/24 (79%)
Query: 16 DKKLFVGMLSKQQNEDDNLSHCFH 39
D+KLFVGMLSKQQ EDD + FH
Sbjct: 54 DRKLFVGMLSKQQTEDD-VRQIFH 76
Score = 44 (20.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI 89
P LF+ L ++ + ++ ++F PFG +
Sbjct: 334 PEGCNLFIYHLPQEFGDAELMQMFLPFGNV 363
>RGD|1565016 [details] [associations]
symbol:Celf5 "CUGBP, Elav-like family member 5" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1565016 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13207 GeneTree:ENSGT00560000076837 OrthoDB:EOG4RJG30 CTD:60680
IPI:IPI00914219 RefSeq:NP_001129075.1 UniGene:Rn.12319
ProteinModelPortal:D4A8V0 Ensembl:ENSRNOT00000061219 GeneID:314647
KEGG:rno:314647 UCSC:RGD:1565016 NextBio:668034 Uniprot:D4A8V0
Length = 395
Score = 172 (65.6 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 30/42 (71%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+E+DV ++F PFG I+ECTVL+GPDG+SK
Sbjct: 95 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 136
Score = 38 (18.4 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLFVG + + +E D
Sbjct: 8 KLFVGQIPRHLHEQD 22
>UNIPROTKB|K7EJK3 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000589229 Uniprot:K7EJK3
Length = 162
Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 55 TCTPLPP--DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
+C PP D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 19 SCLRQPPSQDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 69
>UNIPROTKB|B4DHA8 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
IPI:IPI00853277 UniGene:Hs.435976 UniGene:Hs.600908 HGNC:HGNC:14015
EMBL:AC015961 EMBL:AC090386 EMBL:AC093332 EMBL:AC129908
EMBL:AK295009 ProteinModelPortal:B4DHA8 STRING:B4DHA8
Ensembl:ENST00000588597 UCSC:uc002lai.2 Bgee:B4DHA8 Uniprot:B4DHA8
Length = 454
Score = 176 (67.0 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 140 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 181
Score = 76 (31.8 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 14/17 (82%), Positives = 17/17 (100%)
Query: 16 DKKLFVGMLSKQQNEDD 32
D+KLFVGML+KQQ+EDD
Sbjct: 140 DRKLFVGMLNKQQSEDD 156
Score = 44 (20.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI 89
P LF+ L ++ + ++ ++F PFG +
Sbjct: 406 PEGCNLFIYHLPQEFGDAELMQMFLPFGNV 435
Score = 36 (17.7 bits), Expect = 2.6e-14, Sum P(2) = 2.6e-14
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLF+G + + +E D
Sbjct: 55 KLFIGQIPRNLDEKD 69
>MGI|MGI:1923433 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1923433 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
CTD:60677 EMBL:AK034216 EMBL:BC052406 EMBL:BC057083 IPI:IPI00222250
IPI:IPI00853853 RefSeq:NP_780444.2 UniGene:Mm.265415
ProteinModelPortal:Q7TN33 SMR:Q7TN33 PhosphoSite:Q7TN33
PRIDE:Q7TN33 Ensembl:ENSMUST00000034840 Ensembl:ENSMUST00000121266
GeneID:76183 KEGG:mmu:76183 UCSC:uc009pxx.1 UCSC:uc009pxy.1
NextBio:344727 Bgee:Q7TN33 CleanEx:MM_BRUNOL6 Genevestigator:Q7TN33
Uniprot:Q7TN33
Length = 460
Score = 176 (67.0 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ E+DVR++F PFG IEECTVL+ PDGTSK
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 174
Score = 36 (17.7 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLFVG + + +E D
Sbjct: 47 KLFVGQIPRGLDEQD 61
>RGD|1310451 [details] [associations]
symbol:Celf6 "CUGBP, Elav-like family member 6" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1310451 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OrthoDB:EOG4RJG30
OMA:MQHVAAF IPI:IPI00369994 Ensembl:ENSRNOT00000014450
UCSC:RGD:1310451 Uniprot:D4ABS9
Length = 460
Score = 176 (67.0 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ E+DVR++F PFG IEECTVL+ PDGTSK
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 174
Score = 36 (17.7 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLFVG + + +E D
Sbjct: 47 KLFVGQIPRGLDEQD 61
>UNIPROTKB|Q4R535 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9541
"Macaca fascicularis" [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 GO:GO:0048026 EMBL:AB169709
ProteinModelPortal:Q4R535 SMR:Q4R535 Uniprot:Q4R535
Length = 474
Score = 176 (67.0 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 140 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 181
Score = 76 (31.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 14/17 (82%), Positives = 17/17 (100%)
Query: 16 DKKLFVGMLSKQQNEDD 32
D+KLFVGML+KQQ+EDD
Sbjct: 140 DRKLFVGMLNKQQSEDD 156
Score = 42 (19.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI 89
P LF+ L ++ + ++ ++F PFG +
Sbjct: 406 PEGCNLFIYHLPQEFGDAELMQMFLPFGFV 435
Score = 36 (17.7 bits), Expect = 3.0e-14, Sum P(2) = 3.0e-14
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLF+G + + +E D
Sbjct: 55 KLFIGQIPRNLDEKD 69
>UNIPROTKB|A6H776 [details] [associations]
symbol:BRUNOL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 eggNOG:NOG251494 HOGENOM:HOG000004754
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381 CTD:56853
OMA:EDSEKNG EMBL:DAAA02056370 EMBL:DAAA02056371 EMBL:DAAA02056372
EMBL:DAAA02056373 EMBL:DAAA02056374 EMBL:DAAA02056375
EMBL:DAAA02056376 EMBL:DAAA02056377 EMBL:DAAA02056378 EMBL:BC146142
IPI:IPI00907335 RefSeq:NP_001092538.1 UniGene:Bt.62140 SMR:A6H776
Ensembl:ENSBTAT00000006498 GeneID:535177 KEGG:bta:535177
InParanoid:A6H776 NextBio:20876649 Uniprot:A6H776
Length = 475
Score = 176 (67.0 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 140 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 181
Score = 76 (31.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 14/17 (82%), Positives = 17/17 (100%)
Query: 16 DKKLFVGMLSKQQNEDD 32
D+KLFVGML+KQQ+EDD
Sbjct: 140 DRKLFVGMLNKQQSEDD 156
Score = 42 (19.8 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI 89
P LF+ L ++ + ++ ++F PFG +
Sbjct: 407 PEGCNLFIYHLPQEFGDAELMQMFLPFGFV 436
Score = 36 (17.7 bits), Expect = 3.1e-14, Sum P(2) = 3.1e-14
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLF+G + + +E D
Sbjct: 55 KLFIGQIPRNLDEKD 69
>UNIPROTKB|Q96J87 [details] [associations]
symbol:CELF6 "CUGBP Elav-like family member 6" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=NAS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 GO:GO:0000381
OrthoDB:EOG4RJG30 EMBL:AF401233 EMBL:AF425606 EMBL:AK131098
EMBL:AK294382 EMBL:AK296004 EMBL:AC009690 EMBL:BC030835
EMBL:BC033838 IPI:IPI00171103 IPI:IPI00793692 IPI:IPI00909307
IPI:IPI00922660 RefSeq:NP_001166155.1 RefSeq:NP_001166156.1
RefSeq:NP_443072.3 UniGene:Hs.348342 PDB:2DGQ PDBsum:2DGQ
ProteinModelPortal:Q96J87 SMR:Q96J87 STRING:Q96J87
PhosphoSite:Q96J87 DMDM:74760888 PRIDE:Q96J87
Ensembl:ENST00000287202 Ensembl:ENST00000395258
Ensembl:ENST00000543764 Ensembl:ENST00000567083
Ensembl:ENST00000569547 GeneID:60677 KEGG:hsa:60677 UCSC:uc002auh.2
UCSC:uc002auj.2 CTD:60677 GeneCards:GC15M072577 H-InvDB:HIX0012406
HGNC:HGNC:14059 MIM:612681 neXtProt:NX_Q96J87 PharmGKB:PA25430
InParanoid:Q96J87 OMA:MQHVAAF PhylomeDB:Q96J87
EvolutionaryTrace:Q96J87 GenomeRNAi:60677 NextBio:65492
ArrayExpress:Q96J87 Bgee:Q96J87 CleanEx:HS_BRUNOL6
Genevestigator:Q96J87 Uniprot:Q96J87
Length = 481
Score = 176 (67.0 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ E+DVR++F PFG IEECTVL+ PDGTSK
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 174
Score = 36 (17.7 bits), Expect = 3.2e-14, Sum P(2) = 3.2e-14
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLFVG + + +E D
Sbjct: 47 KLFVGQIPRGLDEQD 61
>UNIPROTKB|E1B8K2 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:DAAA02027998 IPI:IPI00694457 ProteinModelPortal:E1B8K2
Ensembl:ENSBTAT00000018735 Uniprot:E1B8K2
Length = 482
Score = 176 (67.0 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ E+DVR++F PFG IEECTVL+ PDGTSK
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 174
Score = 36 (17.7 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLFVG + + +E D
Sbjct: 47 KLFVGQIPRGLDEQD 61
>UNIPROTKB|F1SHM1 [details] [associations]
symbol:CELF6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 GO:GO:0000381 OMA:MQHVAAF
EMBL:CU012037 Ensembl:ENSSSCT00000002157 Uniprot:F1SHM1
Length = 482
Score = 176 (67.0 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ E+DVR++F PFG IEECTVL+ PDGTSK
Sbjct: 133 DRKLFVGMLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 174
Score = 36 (17.7 bits), Expect = 3.3e-14, Sum P(2) = 3.3e-14
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLFVG + + +E D
Sbjct: 47 KLFVGQIPRGLDEQD 61
>UNIPROTKB|F1PXQ8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13207
GeneTree:ENSGT00560000076837 CTD:60680 OMA:DGMKDLD
EMBL:AAEX03012581 RefSeq:XP_854891.3 Ensembl:ENSCAFT00000030591
GeneID:612072 KEGG:cfa:612072 Uniprot:F1PXQ8
Length = 485
Score = 172 (65.6 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 30/42 (71%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+E+DV ++F PFG I+ECTVL+GPDG+SK
Sbjct: 133 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 174
Score = 37 (18.1 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLFVG + + +E D
Sbjct: 46 KLFVGQIPRNLDEKD 60
>UNIPROTKB|Q8N6W0 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CH471139 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 OrthoDB:EOG4RJG30 EMBL:AB209067
EMBL:AC005331 EMBL:AC006505 EMBL:AC010649 EMBL:AC123911
EMBL:BC028101 EMBL:AF329266 EMBL:AF248649 IPI:IPI00171157
IPI:IPI00853054 RefSeq:NP_001166144.1 RefSeq:NP_068757.2
UniGene:Hs.655747 PDB:2DNH PDBsum:2DNH ProteinModelPortal:Q8N6W0
SMR:Q8N6W0 STRING:Q8N6W0 PhosphoSite:Q8N6W0 DMDM:74762534
PRIDE:Q8N6W0 DNASU:60680 Ensembl:ENST00000292672
Ensembl:ENST00000541430 GeneID:60680 KEGG:hsa:60680 UCSC:uc002lxl.2
UCSC:uc010dtj.2 CTD:60680 GeneCards:GC19P003224 HGNC:HGNC:14058
HPA:HPA042012 MIM:612680 neXtProt:NX_Q8N6W0 PharmGKB:PA25429
InParanoid:Q8N6W0 OMA:DGMKDLD PhylomeDB:Q8N6W0
EvolutionaryTrace:Q8N6W0 GenomeRNAi:60680 NextBio:65500
ArrayExpress:Q8N6W0 Bgee:Q8N6W0 CleanEx:HS_BRUNOL5
Genevestigator:Q8N6W0 Uniprot:Q8N6W0
Length = 485
Score = 172 (65.6 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 30/42 (71%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+E+DV ++F PFG I+ECTVL+GPDG+SK
Sbjct: 133 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 174
Score = 37 (18.1 bits), Expect = 7.1e-14, Sum P(2) = 7.1e-14
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLFVG + + +E D
Sbjct: 46 KLFVGQIPRHLDEKD 60
>UNIPROTKB|F1MD42 [details] [associations]
symbol:F1MD42 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:DAAA02019657 EMBL:DAAA02019658
EMBL:DAAA02019659 EMBL:DAAA02019660 EMBL:DAAA02019661
IPI:IPI00713955 ProteinModelPortal:F1MD42
Ensembl:ENSBTAT00000029023 OMA:PAQSPTM Uniprot:F1MD42
Length = 489
Score = 172 (65.6 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 30/42 (71%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+E+DV ++F PFG I+ECTVL+GPDG+SK
Sbjct: 136 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 177
Score = 37 (18.1 bits), Expect = 7.3e-14, Sum P(2) = 7.3e-14
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLFVG + + +E D
Sbjct: 50 KLFVGQIPRNLDEKD 64
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 169 (64.5 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ ++DVR++F FG I+ECTVL+GPDGTSK
Sbjct: 94 DRKLFVGMLGKQQTDEDVRRMFETFGNIDECTVLRGPDGTSK 135
Score = 39 (18.8 bits), Expect = 7.7e-14, Sum P(2) = 7.7e-14
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 15 PDK-KLFVGMLSKQQNEDD 32
PD KLF+G + + +E D
Sbjct: 4 PDAIKLFIGQIPRNLDEKD 22
>ZFIN|ZDB-GENE-040718-300 [details] [associations]
symbol:celf4 "CUGBP, Elav-like family member 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0003723 "RNA binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040718-300 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4RJG30 EMBL:BC076238
IPI:IPI00491989 RefSeq:NP_001002562.1 UniGene:Dr.81398
ProteinModelPortal:Q6DGV1 SMR:Q6DGV1 GeneID:436835 KEGG:dre:436835
CTD:56853 InParanoid:Q6DGV1 NextBio:20831267 ArrayExpress:Q6DGV1
Bgee:Q6DGV1 Uniprot:Q6DGV1
Length = 520
Score = 173 (66.0 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ EDDVR++F FG+IEECT+L+GPDG SK
Sbjct: 134 DRKLFVGMLNKQQCEDDVRRLFESFGSIEECTILRGPDGNSK 175
Score = 36 (17.7 bits), Expect = 9.1e-14, Sum P(2) = 9.1e-14
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLF+G + + +E D
Sbjct: 48 KLFIGQIPRNLDEKD 62
>UNIPROTKB|F1NYP4 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:EDSEKNG EMBL:AADN02067588
EMBL:AADN02067589 EMBL:AADN02067590 EMBL:AADN02067591
EMBL:AADN02067592 EMBL:AADN02067593 EMBL:AADN02067594
EMBL:AADN02067595 EMBL:AADN02067596 IPI:IPI00590965
Ensembl:ENSGALT00000003800 Uniprot:F1NYP4
Length = 361
Score = 183 (69.5 bits), Expect = 1.0e-13, P = 1.0e-13
Identities = 32/45 (71%), Positives = 40/45 (88%)
Query: 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
+P D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 5 VPEDRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 49
Score = 83 (34.3 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 15/20 (75%), Positives = 19/20 (95%)
Query: 13 LPPDKKLFVGMLSKQQNEDD 32
+P D+KLFVGML+KQQ+EDD
Sbjct: 5 VPEDRKLFVGMLNKQQSEDD 24
Score = 44 (20.5 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI 89
P LF+ L ++ + ++ ++F PFG +
Sbjct: 273 PEGCNLFIYHLPQEFGDAELMQMFLPFGNV 302
>UNIPROTKB|F1ST15 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048026 "positive regulation of mRNA splicing, via
spliceosome" evidence=IEA] [GO:0030317 "sperm motility"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0007283
"spermatogenesis" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0007283 GO:GO:0003723 GO:GO:0030317 GO:GO:0048026
GeneTree:ENSGT00560000076837 OMA:HSAYLNP GO:GO:0000381
EMBL:CU457723 Ensembl:ENSSSCT00000007252 Uniprot:F1ST15
Length = 465
Score = 185 (70.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 95 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 136
>UNIPROTKB|H0Y623 [details] [associations]
symbol:CELF3 "CUGBP Elav-like family member 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 OMA:HSAYLNP
EMBL:AL589765 HGNC:HGNC:11967 ProteinModelPortal:H0Y623
PRIDE:H0Y623 Ensembl:ENST00000420342 Bgee:H0Y623 Uniprot:H0Y623
Length = 466
Score = 185 (70.2 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 95 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 136
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 182 (69.1 bits), Expect = 1.2e-13, P = 1.2e-13
Identities = 32/42 (76%), Positives = 38/42 (90%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ+EDDVR++F PFG IEECT+L+GPDG SK
Sbjct: 2 DRKLFVGMLGKQQSEDDVRRLFEPFGQIEECTILRGPDGASK 43
Score = 75 (31.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 14/17 (82%), Positives = 16/17 (94%)
Query: 16 DKKLFVGMLSKQQNEDD 32
D+KLFVGML KQQ+EDD
Sbjct: 2 DRKLFVGMLGKQQSEDD 18
Score = 44 (20.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTI 89
P LF+ L ++ + ++ ++F PFG +
Sbjct: 266 PEGCNLFIYHLPQEFGDAELTQMFLPFGNV 295
>UNIPROTKB|E2RGA8 [details] [associations]
symbol:CELF3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:HSAYLNP EMBL:AAEX03011056
Ensembl:ENSCAFT00000020318 Uniprot:E2RGA8
Length = 539
Score = 185 (70.2 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 33/42 (78%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQQ ++DVRK+F PFGTI+ECTVL+GPDGTSK
Sbjct: 171 DRKLFVGMLGKQQTDEDVRKMFEPFGTIDECTVLRGPDGTSK 212
>UNIPROTKB|K7EPX2 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 Gene3D:3.30.70.330
HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386 EMBL:AC093332
EMBL:AC129908 Ensembl:ENST00000587924 Uniprot:K7EPX2
Length = 67
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 19 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 60
>UNIPROTKB|K7EQ97 [details] [associations]
symbol:CELF4 "CUGBP Elav-like family member 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 HGNC:HGNC:14015 EMBL:AC015961 EMBL:AC090386
EMBL:AC093332 EMBL:AC129908 Ensembl:ENST00000587819 Uniprot:K7EQ97
Length = 154
Score = 176 (67.0 bits), Expect = 1.6e-13, P = 1.6e-13
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 17 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 58
>ZFIN|ZDB-GENE-000501-2 [details] [associations]
symbol:celf3a "cugbp, Elav-like family member 3a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0048026 "positive regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000501-2 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 GO:GO:0048026
eggNOG:NOG251494 HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837
EMBL:AB032725 EMBL:BX248499 EMBL:BC060923 IPI:IPI00504951
RefSeq:NP_571569.2 UniGene:Dr.8323 ProteinModelPortal:Q9IBD1
SMR:Q9IBD1 Ensembl:ENSDART00000039629 GeneID:57922 KEGG:dre:57922
CTD:57922 OMA:MQHYTAT OrthoDB:EOG4RJG30 NextBio:20891938
Bgee:Q9IBD1 Uniprot:Q9IBD1
Length = 452
Score = 169 (64.5 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 31/42 (73%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML KQ ++ DVRK+F PFG+IEECTVL+GPDG SK
Sbjct: 93 DRKLFVGMLGKQLSDADVRKMFEPFGSIEECTVLRGPDGASK 134
Score = 35 (17.4 bits), Expect = 1.8e-13, Sum P(2) = 1.8e-13
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 18 KLFVGMLSKQQNEDD 32
KLF+G + + E D
Sbjct: 8 KLFIGQIPRNLEEKD 22
>UNIPROTKB|H9L0T2 [details] [associations]
symbol:H9L0T2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02043362 EMBL:AADN02043363
Ensembl:ENSGALT00000028399 Uniprot:H9L0T2
Length = 225
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+EDDV ++F PFG I+ECTVL+GPDG SK
Sbjct: 106 DRKLFVGMLNKQQSEDDVLRLFEPFGVIDECTVLRGPDGNSK 147
>ZFIN|ZDB-GENE-050208-746 [details] [associations]
symbol:celf5 "cugbp, Elav-like family member 5"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-050208-746 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:BX510913 EMBL:AL929135 EMBL:BX664613 IPI:IPI00633183
Ensembl:ENSDART00000093310 Bgee:F1R633 Uniprot:F1R633
Length = 597
Score = 170 (64.9 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 30/42 (71%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ E+DV ++F P+G IEECTVL+GPDG SK
Sbjct: 223 DRKLFVGMLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSK 264
Score = 35 (17.4 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 18 KLFVGMLSKQQNEDD 32
KLF+G + + E D
Sbjct: 137 KLFIGQIPRNLEEKD 151
>WB|WBGene00006807 [details] [associations]
symbol:unc-75 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IDA] [GO:0032224 "positive regulation of
synaptic transmission, cholinergic" evidence=IMP] [GO:0032230
"positive regulation of synaptic transmission, GABAergic"
evidence=IMP] [GO:0016071 "mRNA metabolic process" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0007271 "synaptic
transmission, cholinergic" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0016071 GO:GO:0000166 GO:GO:0016607 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0032230 GO:GO:0007271 HSSP:P19339
KO:K13207 GeneTree:ENSGT00560000076837 GO:GO:0032224 EMBL:Z81473
EMBL:AY342388 PIR:T19347 RefSeq:NP_492958.3 UniGene:Cel.20354
ProteinModelPortal:G5EE68 SMR:G5EE68 IntAct:G5EE68
EnsemblMetazoa:C17D12.2 GeneID:182722 KEGG:cel:CELE_C17D12.2
CTD:182722 WormBase:C17D12.2 OMA:SHAQTEN NextBio:918598
Uniprot:G5EE68
Length = 514
Score = 156 (60.0 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 29/42 (69%), Positives = 36/42 (85%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
DKKLF+GMLSKQQ+ED+VR +FA FG ++E TVL+G DG SK
Sbjct: 123 DKKLFIGMLSKQQSEDEVRALFATFGELDEVTVLRGADGASK 164
Score = 77 (32.2 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 14/17 (82%), Positives = 17/17 (100%)
Query: 16 DKKLFVGMLSKQQNEDD 32
DKKLF+GMLSKQQ+ED+
Sbjct: 123 DKKLFIGMLSKQQSEDE 139
Score = 49 (22.3 bits), Expect = 6.5e-05, Sum P(2) = 6.5e-05
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 59 LPPDK-KLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 94
L PD LF+ L ++ + ++ ++FAPFG I V
Sbjct: 424 LGPDGCNLFIYHLPQEFGDAELIQMFAPFGHIVSAKV 460
Score = 46 (21.3 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 12/25 (48%), Positives = 14/25 (56%)
Query: 15 PDK-KLFVGMLSKQQNEDDNLSHCF 38
PD KLFVG + + E D L H F
Sbjct: 26 PDAIKLFVGQIPRNLEEKD-LRHLF 49
>UNIPROTKB|F1SAI1 [details] [associations]
symbol:CELF4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0090394 "negative regulation of excitatory postsynaptic
membrane potential" evidence=IEA] [GO:0048026 "positive regulation
of mRNA splicing, via spliceosome" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000380 "alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026
GO:GO:0006376 GeneTree:ENSGT00560000076837 GO:GO:0000381
OMA:SAMESIN EMBL:CU442705 EMBL:FP102263 Ensembl:ENSSSCT00000004150
Uniprot:F1SAI1
Length = 371
Score = 176 (67.0 bits), Expect = 6.5e-13, P = 6.5e-13
Identities = 31/42 (73%), Positives = 38/42 (90%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 18 DRKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 59
Score = 76 (31.8 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 14/17 (82%), Positives = 17/17 (100%)
Query: 16 DKKLFVGMLSKQQNEDD 32
D+KLFVGML+KQQ+EDD
Sbjct: 18 DRKLFVGMLNKQQSEDD 34
Score = 41 (19.5 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 8/28 (28%), Positives = 16/28 (57%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFG 87
P LF+ L ++ + ++ ++F PFG
Sbjct: 284 PEGCNLFICHLPQEFGDAELMQMFLPFG 311
>UNIPROTKB|B4DFI3 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG107646
HOGENOM:HOG000004754 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
EMBL:AC123911 UniGene:Hs.655747 HGNC:HGNC:14058 EMBL:AK294109
IPI:IPI00645373 SMR:B4DFI3 STRING:B4DFI3 Ensembl:ENST00000334293
Uniprot:B4DFI3
Length = 320
Score = 172 (65.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 30/42 (71%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+E+DV ++F PFG I+ECTVL+GPDG+SK
Sbjct: 19 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 60
>UNIPROTKB|F1M3I9 [details] [associations]
symbol:Brunol4 "Protein Brunol4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00358672
Ensembl:ENSRNOT00000019548 ArrayExpress:F1M3I9 Uniprot:F1M3I9
Length = 306
Score = 170 (64.9 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 30/41 (73%), Positives = 37/41 (90%)
Query: 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 1 RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 41
>UNIPROTKB|F1S8E8 [details] [associations]
symbol:CELF5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 OMA:DGMKDLD EMBL:FP016150
EMBL:FP565386 Ensembl:ENSSSCT00000014721 Uniprot:F1S8E8
Length = 420
Score = 172 (65.6 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 30/42 (71%), Positives = 39/42 (92%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGML+KQQ+E+DV ++F PFG I+ECTVL+GPDG+SK
Sbjct: 67 DRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 108
>RGD|1307630 [details] [associations]
symbol:Celf4 "CUGBP, Elav-like family member 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307630 GO:GO:0005634 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000380 GO:GO:0048026 GO:GO:0006376
GeneTree:ENSGT00560000076837 GO:GO:0000381 IPI:IPI00870309
Ensembl:ENSRNOT00000061151 ArrayExpress:F1M6I9 Uniprot:F1M6I9
Length = 355
Score = 170 (64.9 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 30/41 (73%), Positives = 37/41 (90%)
Query: 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
+KLFVGML+KQQ+EDDVR++F FG IEECT+L+GPDG SK
Sbjct: 1 RKLFVGMLNKQQSEDDVRRLFEAFGNIEECTILRGPDGNSK 41
>UNIPROTKB|F1NZY6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00560000076837 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00971429 Ensembl:ENSGALT00000010859
ArrayExpress:F1NZY6 Uniprot:F1NZY6
Length = 484
Score = 156 (60.0 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 148
Score = 37 (18.1 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
P P K+FVG + + +E + L F P+ + +++ + PP K
Sbjct: 11 PDPDAIKMFVGQIPRSWSEKE-LKELFE---PYGAVYQINVLRDRSQNPPQSK 59
>UNIPROTKB|E1C045 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 IPI:IPI00587312 EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 ProteinModelPortal:E1C045
Ensembl:ENSGALT00000010858 ArrayExpress:E1C045 Uniprot:E1C045
Length = 488
Score = 156 (60.0 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 148
Score = 37 (18.1 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
P P K+FVG + + +E + L F P+ + +++ + PP K
Sbjct: 11 PDPDAIKMFVGQIPRSWSEKE-LKELFE---PYGAVYQINVLRDRSQNPPQSK 59
>UNIPROTKB|F1P674 [details] [associations]
symbol:CELF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 GeneTree:ENSGT00560000076837 CTD:10659
OMA:TMRNEEL EMBL:AAEX03001288 EMBL:AAEX03001289 EMBL:AAEX03001290
RefSeq:XP_003433765.1 ProteinModelPortal:F1P674
Ensembl:ENSCAFT00000008021 GeneID:607310 KEGG:cfa:607310
Uniprot:F1P674
Length = 488
Score = 156 (60.0 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 148
Score = 37 (18.1 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
P P K+FVG + + +E + L F P+ + +++ + PP K
Sbjct: 11 PDPDAIKMFVGQIPRSWSEKE-LKELFE---PYGAVYQINVLRDRSQNPPQSK 59
>UNIPROTKB|F1P017 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:AADN02039408
EMBL:AADN02039409 EMBL:AADN02039410 EMBL:AADN02039411
EMBL:AADN02039412 EMBL:AADN02039413 EMBL:AADN02039414
EMBL:AADN02039415 EMBL:AADN02039416 EMBL:AADN02039417
EMBL:AADN02039418 EMBL:AADN02039419 EMBL:AADN02039420
EMBL:AADN02039421 EMBL:AADN02039422 EMBL:AADN02039423
EMBL:AADN02039424 EMBL:AADN02039425 EMBL:AADN02039426
EMBL:AADN02039427 EMBL:AADN02039428 EMBL:AADN02039429
EMBL:AADN02039430 EMBL:AADN02039431 EMBL:AADN02039432
EMBL:AADN02039433 IPI:IPI00820413 Ensembl:ENSGALT00000040039
ArrayExpress:F1P017 Uniprot:F1P017
Length = 494
Score = 156 (60.0 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 113 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 154
Score = 37 (18.1 bits), Expect = 4.1e-12, Sum P(2) = 4.1e-12
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
P P K+FVG + + +E + L F P+ + +++ + PP K
Sbjct: 17 PDPDAIKMFVGQIPRSWSEKE-LKELFE---PYGAVYQINVLRDRSQNPPQSK 65
>UNIPROTKB|Q5VZZ6 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
EMBL:AL157704 EMBL:AL136320 IPI:IPI00845480 UniGene:Hs.309288
HGNC:HGNC:2550 EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:Q5VZZ6
Ensembl:ENST00000354897 Uniprot:Q5VZZ6
Length = 498
Score = 156 (60.0 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 148
Score = 37 (18.1 bits), Expect = 4.2e-12, Sum P(2) = 4.2e-12
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
P P K+FVG + + +E + L F P+ + +++ + PP K
Sbjct: 11 PDPDAIKMFVGQIPRSWSEKE-LKELFE---PYGAVYQINVLRDRSQNPPQSK 59
>UNIPROTKB|O95319 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006396 "RNA processing"
evidence=TAS] [GO:0008016 "regulation of heart contraction"
evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0008016 GO:GO:0003723
GO:GO:0006396 EMBL:CH471072 EMBL:AC026887 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 CTD:10659
EMBL:AF090694 EMBL:AF090693 EMBL:AF036956 EMBL:U69546 EMBL:AF295068
EMBL:AF295063 EMBL:AF295064 EMBL:AF295065 EMBL:AF295066
EMBL:AF295067 EMBL:AF314199 EMBL:AF432906 EMBL:AK316354
EMBL:AL157704 EMBL:AL136320 EMBL:BC036391 IPI:IPI00410277
IPI:IPI00607544 IPI:IPI00845479 IPI:IPI00845480 IPI:IPI00853320
RefSeq:NP_001020247.1 RefSeq:NP_001020248.1 RefSeq:NP_001077060.1
RefSeq:NP_006552.3 UniGene:Hs.309288 ProteinModelPortal:O95319
SMR:O95319 IntAct:O95319 MINT:MINT-2868664 STRING:O95319
PhosphoSite:O95319 UCD-2DPAGE:O95319 PaxDb:O95319 PRIDE:O95319
Ensembl:ENST00000315874 Ensembl:ENST00000354440
Ensembl:ENST00000379261 Ensembl:ENST00000399850
Ensembl:ENST00000416382 Ensembl:ENST00000417956
Ensembl:ENST00000427450 GeneID:10659 KEGG:hsa:10659 UCSC:uc001iki.4
UCSC:uc001ikk.2 UCSC:uc001iko.4 UCSC:uc001ikp.4 UCSC:uc010qbj.1
GeneCards:GC10P011049 HGNC:HGNC:2550 MIM:602538 neXtProt:NX_O95319
PharmGKB:PA27046 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
ArrayExpress:O95319 Bgee:O95319 CleanEx:HS_CUGBP2
Genevestigator:O95319 Uniprot:O95319
Length = 508
Score = 156 (60.0 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 131 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 172
Score = 37 (18.1 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
P P K+FVG + + +E + L F P+ + +++ + PP K
Sbjct: 35 PDPDAIKMFVGQIPRSWSEKE-LKELFE---PYGAVYQINVLRDRSQNPPQSK 83
>MGI|MGI:1338822 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006376
"mRNA splice site selection" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1338822 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879
HOVERGEN:HBG107646 KO:K13207 eggNOG:NOG251494 GO:GO:0006376
GeneTree:ENSGT00560000076837 CTD:10659 ChiTaRS:CELF2 EMBL:AF090696
EMBL:AF090697 EMBL:Y18298 EMBL:AK137292 EMBL:AK151818 EMBL:AK152628
EMBL:AK153267 EMBL:AK160861 EMBL:AK161349 EMBL:AK164914
EMBL:AL929240 EMBL:AL845492 EMBL:AL845515 EMBL:BC026856
IPI:IPI00129146 IPI:IPI00651950 IPI:IPI00750780 IPI:IPI00751703
IPI:IPI00756899 IPI:IPI00853748 IPI:IPI00853844 IPI:IPI00853921
IPI:IPI00854018 IPI:IPI00854021 RefSeq:NP_001103698.1
RefSeq:NP_001103699.1 RefSeq:NP_001103700.1 RefSeq:NP_001103701.1
RefSeq:NP_001103702.1 RefSeq:NP_001153764.1 RefSeq:NP_001153765.1
RefSeq:NP_034290.2 UniGene:Mm.398543 ProteinModelPortal:Q9Z0H4
SMR:Q9Z0H4 STRING:Q9Z0H4 PhosphoSite:Q9Z0H4 PaxDb:Q9Z0H4
PRIDE:Q9Z0H4 Ensembl:ENSMUST00000002176 Ensembl:ENSMUST00000100429
Ensembl:ENSMUST00000114924 Ensembl:ENSMUST00000114927
Ensembl:ENSMUST00000114934 GeneID:14007 KEGG:mmu:14007
UCSC:uc008ign.1 UCSC:uc008igo.1 UCSC:uc008igp.1 UCSC:uc008igq.2
UCSC:uc008igs.2 UCSC:uc008igt.2 UCSC:uc008igv.2 InParanoid:Q9Z0H4
OMA:TMRNEEL NextBio:284908 Bgee:Q9Z0H4 CleanEx:MM_CUGBP2
Genevestigator:Q9Z0H4 Uniprot:Q9Z0H4
Length = 508
Score = 156 (60.0 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 131 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 172
Score = 37 (18.1 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
P P K+FVG + + +E + L F P+ + +++ + PP K
Sbjct: 35 PDPDAIKMFVGQIPRSWSEKE-LKELFE---PYGAVYQINVLRDRSQNPPQSK 83
>RGD|68347 [details] [associations]
symbol:Celf2 "CUGBP, Elav-like family member 2" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0005634 "nucleus"
evidence=IEA;ISO] [GO:0005737 "cytoplasm" evidence=IEA;ISO]
[GO:0006376 "mRNA splice site selection" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360 RGD:68347
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0006376 GeneTree:ENSGT00560000076837 CTD:10659 OMA:TMRNEEL
EMBL:AF090695 EMBL:AJ010351 EMBL:AJ010386 EMBL:BC129096
IPI:IPI00212483 IPI:IPI00781372 IPI:IPI00854036 IPI:IPI00854042
RefSeq:NP_058893.2 UniGene:Rn.162247 ProteinModelPortal:Q792H5
SMR:Q792H5 STRING:Q792H5 PhosphoSite:Q792H5 PRIDE:Q792H5
Ensembl:ENSRNOT00000023436 GeneID:29428 KEGG:rno:29428
InParanoid:Q792H5 NextBio:609142 ArrayExpress:Q792H5
Genevestigator:Q792H5 Uniprot:Q792H5
Length = 508
Score = 156 (60.0 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 131 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 172
Score = 37 (18.1 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
P P K+FVG + + +E + L F P+ + +++ + PP K
Sbjct: 35 PDPDAIKMFVGQIPRSWSEKE-LKELFE---PYGAVYQINVLRDRSQNPPQSK 83
>UNIPROTKB|E9PC62 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC026887 KO:K13207
GO:GO:0006376 CTD:10659 EMBL:AL157704 EMBL:AL136320 IPI:IPI00845479
RefSeq:NP_006552.3 UniGene:Hs.309288 GeneID:10659 KEGG:hsa:10659
HGNC:HGNC:2550 ChiTaRS:CELF2 GenomeRNAi:10659 NextBio:40529
OMA:TMRNEEL EMBL:AL136369 EMBL:AL138769 EMBL:AL162408 SMR:E9PC62
Ensembl:ENST00000450189 Ensembl:ENST00000542579 UCSC:uc001ikl.4
Uniprot:E9PC62
Length = 521
Score = 156 (60.0 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 138 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 179
Score = 37 (18.1 bits), Expect = 4.9e-12, Sum P(2) = 4.9e-12
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
P P K+FVG + + +E + L F P+ + +++ + PP K
Sbjct: 42 PDPDAIKMFVGQIPRSWSEKE-LKELFE---PYGAVYQINVLRDRSQNPPQSK 90
>UNIPROTKB|Q7T2T1 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 eggNOG:NOG251494 HOGENOM:HOG000004754 EMBL:AY288985
EMBL:AY288986 IPI:IPI00574339 IPI:IPI00587312 RefSeq:NP_989591.1
UniGene:Gga.4919 ProteinModelPortal:Q7T2T1 SMR:Q7T2T1 STRING:Q7T2T1
PRIDE:Q7T2T1 GeneID:374111 KEGG:gga:374111 CTD:10659
InParanoid:Q7T2T1 NextBio:20813628 Uniprot:Q7T2T1
Length = 484
Score = 156 (60.0 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 148
Score = 34 (17.0 bits), Expect = 7.7e-12, Sum P(2) = 7.7e-12
Identities = 13/53 (24%), Positives = 23/53 (43%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
P P K FVG + + +E + L F P+ + +++ + PP K
Sbjct: 11 PDPDAIKTFVGQIPRSWSEKE-LKELFE---PYGAVYQINVLRDRSQNPPQSK 59
>ZFIN|ZDB-GENE-000501-1 [details] [associations]
symbol:celf1 "cugbp, Elav-like family member 1"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0045495 "pole plasm"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-000501-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0045495
GeneTree:ENSGT00560000076837 EMBL:CR318601 EMBL:BX571680
IPI:IPI00492280 Ensembl:ENSDART00000123170 Uniprot:E7F304
Length = 535
Score = 155 (59.6 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLFVGM+SK+ NE+D+R +F+P+G IEEC +L+GPDG S+
Sbjct: 145 DRKLFVGMISKKCNENDIRLMFSPYGQIEECRILRGPDGLSR 186
Score = 36 (17.7 bits), Expect = 8.6e-12, Sum P(2) = 8.6e-12
Identities = 12/47 (25%), Positives = 22/47 (46%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
K+FVG + + +ED L F P+ + +++ + PP K
Sbjct: 55 KMFVGQIPRTWSEDQ-LRELFE---PYGAVYEINVLRDRSQNPPQSK 97
>ZFIN|ZDB-GENE-030826-35 [details] [associations]
symbol:celf2 "cugbp, Elav-like family member 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 ZFIN:ZDB-GENE-030826-35 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:AL935165 EMBL:BX511190 EMBL:CABZ01029785 EMBL:CABZ01029786
EMBL:CABZ01029787 IPI:IPI00994559 Ensembl:ENSDART00000129320
ArrayExpress:E7F7K3 Bgee:E7F7K3 Uniprot:E7F7K3
Length = 585
Score = 153 (58.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 25/42 (59%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+P+G IEEC +L+GPDG S+
Sbjct: 206 DRKLFIGMVSKKCNENDIRVMFSPYGQIEECRILRGPDGLSR 247
Score = 38 (18.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKK 64
P P K+FVG + + +E + L F P+ + +++ + PP K
Sbjct: 110 PDPDAIKMFVGQIPRSWSEKE-LKELFE---PYGAVYQINILRDRSQNPPQSK 158
>UNIPROTKB|F1P311 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02033464 IPI:IPI01017320
Ensembl:ENSGALT00000038509 ArrayExpress:F1P311 Uniprot:F1P311
Length = 328
Score = 157 (60.3 bits), Expect = 5.9e-11, P = 5.9e-11
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 12 DRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 53
>UNIPROTKB|F1P022 [details] [associations]
symbol:CELF2 "CUGBP Elav-like family member 2" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02039408 EMBL:AADN02039409
EMBL:AADN02039410 EMBL:AADN02039411 EMBL:AADN02039412
EMBL:AADN02039413 EMBL:AADN02039414 EMBL:AADN02039415
EMBL:AADN02039416 EMBL:AADN02039417 EMBL:AADN02039418
EMBL:AADN02039419 EMBL:AADN02039420 EMBL:AADN02039421
EMBL:AADN02039422 EMBL:AADN02039423 EMBL:AADN02039424
EMBL:AADN02039425 EMBL:AADN02039426 EMBL:AADN02039427
EMBL:AADN02039428 EMBL:AADN02039429 EMBL:AADN02039430
EMBL:AADN02039431 EMBL:AADN02039432 EMBL:AADN02039433
IPI:IPI00574286 Ensembl:ENSGALT00000040033 ArrayExpress:F1P022
Uniprot:F1P022
Length = 325
Score = 156 (60.0 bits), Expect = 7.4e-11, P = 7.4e-11
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 12 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 53
>UNIPROTKB|E1BIM7 [details] [associations]
symbol:LOC100851458 "Uncharacterized protein" species:9913
"Bos taurus" [GO:0006376 "mRNA splice site selection" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:TMRNEEL EMBL:DAAA02035244
IPI:IPI00924044 ProteinModelPortal:E1BIM7
Ensembl:ENSBTAT00000011768 ArrayExpress:E1BIM7 Uniprot:E1BIM7
Length = 397
Score = 156 (60.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 20 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 61
>UNIPROTKB|B4DIB6 [details] [associations]
symbol:CELF2 "cDNA FLJ51739, highly similar to Homo sapiens
CUG triplet repeat, RNA binding protein 2 (CUGBP2), transcript
variant 2, mRNA" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC026887 HOVERGEN:HBG107646 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0006376 EMBL:AL157704 EMBL:AL136320
UniGene:Hs.309288 HGNC:HGNC:2550 ChiTaRS:CELF2 EMBL:AL136369
EMBL:AL138769 EMBL:AL162408 EMBL:AK295511 IPI:IPI01011300
SMR:B4DIB6 STRING:B4DIB6 Ensembl:ENST00000537122 UCSC:uc010qbo.1
Uniprot:B4DIB6
Length = 403
Score = 156 (60.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 20 DRKLFIGMVSKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 61
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 157 (60.3 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 148
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 157 (60.3 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 26/42 (61%), Positives = 37/42 (88%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ NE+D+R +F+PFG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSR 148
>WB|WBGene00001340 [details] [associations]
symbol:etr-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0010171
"body morphogenesis" evidence=IMP] [GO:0048477 "oogenesis"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040002 "collagen and
cuticulin-based cuticle development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0061199 "striated muscle contraction involved in
embryonic body morphogenesis" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0008340
GO:GO:0009792 GO:GO:0018991 GO:GO:0006915 GO:GO:0002119
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011
GO:GO:0048477 GO:GO:0003676 GO:GO:0040002 KO:K13207
HOGENOM:HOG000004754 GeneTree:ENSGT00560000076837 EMBL:FO081419
UniGene:Cel.5079 GeneID:173401 KEGG:cel:CELE_T01D1.2
UCSC:T01D1.2a.1 CTD:173401 NextBio:879497 RefSeq:NP_001122631.1
ProteinModelPortal:A8DYS0 SMR:A8DYS0 IntAct:A8DYS0 STRING:A8DYS0
EnsemblMetazoa:T01D1.2f.1 EnsemblMetazoa:T01D1.2f.2
EnsemblMetazoa:T01D1.2f.3 EnsemblMetazoa:T01D1.2f.4
EnsemblMetazoa:T01D1.2f.5 EnsemblMetazoa:T01D1.2f.6
WormBase:T01D1.2f InParanoid:A8DYS0 ArrayExpress:A8DYS0
Uniprot:A8DYS0
Length = 588
Score = 132 (51.5 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 23/42 (54%), Positives = 35/42 (83%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
++KLF+G LSK+ NE+++R+IFA FG IE+C+VL+ DG S+
Sbjct: 141 ERKLFIGQLSKKHNEENLREIFAKFGHIEDCSVLRDQDGKSR 182
Score = 89 (36.4 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 16/43 (37%), Positives = 27/43 (62%)
Query: 57 TPLPPDK---KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96
+P PD K+FVG + +Q NE D R++F +G++ C +L+
Sbjct: 46 SPSEPDTDAIKMFVGQIPRQWNETDCRRLFEKYGSVFSCNILR 88
Score = 49 (22.3 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 11 TPLPPDK---KLFVGMLSKQQNEDD 32
+P PD K+FVG + +Q NE D
Sbjct: 46 SPSEPDTDAIKMFVGQIPRQWNETD 70
Score = 32 (16.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 5/8 (62%), Positives = 7/8 (87%)
Query: 95 LKGPDGTS 102
+KGPDG +
Sbjct: 497 VKGPDGAN 504
>UNIPROTKB|A7MB95 [details] [associations]
symbol:CUGBP1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0043484 "regulation of RNA splicing" evidence=IEA]
[GO:0042835 "BRE binding" evidence=IEA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0006376 "mRNA
splice site selection" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
GeneTree:ENSGT00560000076837 OMA:PTLYNQS EMBL:DAAA02041602
EMBL:DAAA02041603 EMBL:DAAA02041604 EMBL:BC151433 IPI:IPI00824850
RefSeq:NP_001094682.1 UniGene:Bt.16531 SMR:A7MB95 STRING:A7MB95
Ensembl:ENSBTAT00000003274 GeneID:540475 KEGG:bta:540475
InParanoid:A7MB95 NextBio:20878658 Uniprot:A7MB95
Length = 486
Score = 143 (55.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR 148
Score = 33 (16.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
K+FVG + + +E D
Sbjct: 17 KMFVGQVPRTWSEKD 31
>UNIPROTKB|Q92879 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0007286 "spermatid development" evidence=IEA] [GO:0031369
"translation initiation factor binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006376
"mRNA splice site selection" evidence=ISS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0042835 "BRE binding" evidence=IDA] [GO:0016246
"RNA interference" evidence=NAS] [GO:0007281 "germ cell
development" evidence=NAS] [GO:0009790 "embryo development"
evidence=NAS] [GO:0030529 "ribonucleoprotein complex" evidence=NAS]
[GO:0000900 "translation repressor activity, nucleic acid binding"
evidence=NAS] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0043484 "regulation of RNA
splicing" evidence=IDA] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 EMBL:CH471064 GO:GO:0016246
GO:GO:0007286 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0003676 GO:GO:0009790 GO:GO:0030529
GO:GO:0007281 GO:GO:0043484 GO:GO:0000900 HOVERGEN:HBG107646
KO:K13207 CTD:10658 eggNOG:NOG251494 HOGENOM:HOG000004754
OrthoDB:EOG4N8R4X EMBL:U63289 EMBL:AF248648 EMBL:AF267533
EMBL:AF267534 EMBL:AJ007988 EMBL:AK304430 EMBL:AB210019
EMBL:AC090559 EMBL:BC031079 IPI:IPI00034015 IPI:IPI00218388
IPI:IPI00218389 IPI:IPI00853009 IPI:IPI00956101
RefSeq:NP_001020767.1 RefSeq:NP_001166110.1 RefSeq:NP_001166111.1
RefSeq:NP_006551.1 RefSeq:NP_941989.1 UniGene:Hs.595333 PDB:2CPZ
PDB:2DHS PDB:2RQ4 PDB:2RQC PDB:3NMR PDB:3NNA PDB:3NNC PDB:3NNH
PDBsum:2CPZ PDBsum:2DHS PDBsum:2RQ4 PDBsum:2RQC PDBsum:3NMR
PDBsum:3NNA PDBsum:3NNC PDBsum:3NNH ProteinModelPortal:Q92879
SMR:Q92879 IntAct:Q92879 MINT:MINT-1382906 STRING:Q92879
PhosphoSite:Q92879 DMDM:17374605 PaxDb:Q92879 PRIDE:Q92879
DNASU:10658 Ensembl:ENST00000310513 Ensembl:ENST00000358597
Ensembl:ENST00000361904 Ensembl:ENST00000395290
Ensembl:ENST00000395292 Ensembl:ENST00000532048 GeneID:10658
KEGG:hsa:10658 UCSC:uc001nfk.2 UCSC:uc001nfl.3 UCSC:uc001nfm.3
UCSC:uc001nfn.3 GeneCards:GC11M047602 HGNC:HGNC:2549 HPA:CAB016114
MIM:601074 neXtProt:NX_Q92879 PharmGKB:PA27045 InParanoid:Q92879
PhylomeDB:Q92879 ChiTaRS:CELF1 EvolutionaryTrace:Q92879
GenomeRNAi:10658 NextBio:40521 ArrayExpress:Q92879 Bgee:Q92879
CleanEx:HS_CUGBP1 Genevestigator:Q92879 GermOnline:ENSG00000149187
GO:GO:0042835 GO:GO:0006376 Uniprot:Q92879
Length = 486
Score = 143 (55.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR 148
Score = 33 (16.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
K+FVG + + +E D
Sbjct: 17 KMFVGQVPRTWSEKD 31
>MGI|MGI:1342295 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA;TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0006376 "mRNA splice site
selection" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IMP]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0031369 "translation
initiation factor binding" evidence=IDA] [GO:0040018 "positive
regulation of multicellular organism growth" evidence=IMP]
[GO:0042835 "BRE binding" evidence=ISO] [GO:0043484 "regulation of
RNA splicing" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1342295
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
EMBL:AL672241 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 ChiTaRS:CELF1 GO:GO:0042835 GO:GO:0006376
EMBL:AJ007987 EMBL:AF267535 EMBL:AK135030 EMBL:AK143698
EMBL:AK014492 EMBL:AK156725 EMBL:BC021393 EMBL:AF314172
EMBL:AB050499 EMBL:X61451 IPI:IPI00123205 IPI:IPI00229237
IPI:IPI00229238 IPI:IPI00395213 PIR:S16865 RefSeq:NP_001231820.1
RefSeq:NP_001231832.1 RefSeq:NP_059064.2 RefSeq:NP_941955.1
UniGene:Mm.29495 UniGene:Mm.490161 ProteinModelPortal:P28659
SMR:P28659 STRING:P28659 PhosphoSite:P28659 PaxDb:P28659
PRIDE:P28659 Ensembl:ENSMUST00000005643 Ensembl:ENSMUST00000068726
Ensembl:ENSMUST00000068747 Ensembl:ENSMUST00000111448
Ensembl:ENSMUST00000111449 Ensembl:ENSMUST00000111451
Ensembl:ENSMUST00000111452 Ensembl:ENSMUST00000111455
Ensembl:ENSMUST00000177642 GeneID:13046 KEGG:mmu:13046
UCSC:uc008ktx.1 GeneTree:ENSGT00560000076837 InParanoid:P28659
OMA:PTLYNQS NextBio:282946 Bgee:P28659 CleanEx:MM_CUGBP1
Genevestigator:P28659 GermOnline:ENSMUSG00000005506 GO:GO:0031369
Uniprot:P28659
Length = 486
Score = 143 (55.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR 148
Score = 33 (16.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
K+FVG + + +E D
Sbjct: 17 KMFVGQVPRTWSEKD 31
>RGD|1307721 [details] [associations]
symbol:Celf1 "CUGBP, Elav-like family member 1" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO;ISS] [GO:0003729 "mRNA binding"
evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0006376 "mRNA splice
site selection" evidence=IEA;ISO] [GO:0007286 "spermatid
development" evidence=IEA;ISO] [GO:0031369 "translation initiation
factor binding" evidence=IEA;ISO] [GO:0040018 "positive regulation
of multicellular organism growth" evidence=IEA;ISO] [GO:0042835
"BRE binding" evidence=IEA;ISO] [GO:0043484 "regulation of RNA
splicing" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307721
GO:GO:0005634 GO:GO:0005737 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723
GO:GO:0043484 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658
eggNOG:NOG251494 HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X
GO:GO:0042835 GO:GO:0006376 EMBL:BC098012 IPI:IPI00373642
RefSeq:NP_001020592.1 UniGene:Rn.22432 ProteinModelPortal:Q4QQT3
SMR:Q4QQT3 STRING:Q4QQT3 PhosphoSite:Q4QQT3 PRIDE:Q4QQT3
GeneID:362160 KEGG:rno:362160 UCSC:RGD:1307721 InParanoid:Q4QQT3
NextBio:678844 Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 143 (55.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR 148
Score = 33 (16.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
K+FVG + + +E D
Sbjct: 17 KMFVGQVPRTWSEKD 31
>UNIPROTKB|Q4QQT3 [details] [associations]
symbol:Celf1 "CUGBP Elav-like family member 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1307721 GO:GO:0005634
GO:GO:0005737 GO:GO:0007286 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 OrthoDB:EOG4N8R4X GO:GO:0042835 GO:GO:0006376
EMBL:BC098012 IPI:IPI00373642 RefSeq:NP_001020592.1
UniGene:Rn.22432 ProteinModelPortal:Q4QQT3 SMR:Q4QQT3 STRING:Q4QQT3
PhosphoSite:Q4QQT3 PRIDE:Q4QQT3 GeneID:362160 KEGG:rno:362160
UCSC:RGD:1307721 InParanoid:Q4QQT3 NextBio:678844
Genevestigator:Q4QQT3 Uniprot:Q4QQT3
Length = 487
Score = 143 (55.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L+GPDG S+
Sbjct: 107 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR 148
Score = 33 (16.7 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
K+FVG + + +E D
Sbjct: 17 KMFVGQVPRTWSEKD 31
>UNIPROTKB|E2R8F6 [details] [associations]
symbol:CELF1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043484 "regulation of RNA splicing"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0040018
"positive regulation of multicellular organism growth"
evidence=IEA] [GO:0031369 "translation initiation factor binding"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA] [GO:0003729
"mRNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0007286 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0040018 GO:GO:0043484
GO:GO:0042835 GO:GO:0006376 GeneTree:ENSGT00560000076837
OMA:PTLYNQS EMBL:AAEX03011483 ProteinModelPortal:E2R8F6
Ensembl:ENSCAFT00000013438 Uniprot:E2R8F6
Length = 513
Score = 143 (55.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L+GPDG S+
Sbjct: 134 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR 175
Score = 33 (16.7 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
K+FVG + + +E D
Sbjct: 44 KMFVGQVPRTWSEKD 58
>UNIPROTKB|G5EA30 [details] [associations]
symbol:CELF1 "CUG triplet repeat, RNA binding protein 1,
isoform CRA_c" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CH471064 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC090559 UniGene:Hs.595333
HGNC:HGNC:2549 ChiTaRS:CELF1 OMA:PTLYNQS ProteinModelPortal:G5EA30
SMR:G5EA30 PRIDE:G5EA30 Ensembl:ENST00000531165 ArrayExpress:G5EA30
Bgee:G5EA30 Uniprot:G5EA30
Length = 514
Score = 143 (55.4 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 24/42 (57%), Positives = 35/42 (83%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L+GPDG S+
Sbjct: 134 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSR 175
Score = 33 (16.7 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
K+FVG + + +E D
Sbjct: 44 KMFVGQVPRTWSEKD 58
>FB|FBgn0000114 [details] [associations]
symbol:aret "arrest" species:7227 "Drosophila melanogaster"
[GO:0048477 "oogenesis" evidence=IMP] [GO:0007286 "spermatid
development" evidence=IMP] [GO:0007319 "negative regulation of
oskar mRNA translation" evidence=IDA;NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0030727 "germarium-derived female germ-line cyst
formation" evidence=TAS] [GO:0042078 "germ-line stem cell division"
evidence=NAS] [GO:0046011 "regulation of oskar mRNA translation"
evidence=TAS] [GO:0006378 "mRNA polyadenylation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0017148
"negative regulation of translation" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0043186 "P granule"
evidence=IDA] [GO:0005634 "nucleus" evidence=IC] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0003723 "RNA binding" evidence=IDA] [GO:0007281
"germ cell development" evidence=IMP] [GO:0031536 "positive
regulation of exit from mitosis" evidence=IMP] [GO:0002121
"inter-male aggressive behavior" evidence=IMP] [GO:0007476
"imaginal disc-derived wing morphogenesis" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:AE014134 GO:GO:0007286
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0003730
GO:GO:0002121 HSSP:P19339 GO:GO:0007476 GO:GO:0030727 GO:GO:0007319
GO:GO:0031536 GO:GO:0042078 GeneTree:ENSGT00560000076837
GO:GO:0000381 GO:GO:0043186 FlyBase:FBgn0000114 UniGene:Dm.4487
GeneID:34648 KEGG:dme:Dmel_CG31762 CTD:34648 KO:K02177
GenomeRNAi:34648 NextBio:789496 EMBL:BT133212 RefSeq:NP_723737.1
SMR:Q8IP90 MINT:MINT-1597685 STRING:Q8IP90
EnsemblMetazoa:FBtr0080344 EnsemblMetazoa:FBtr0331645
UCSC:CG31762-RB InParanoid:Q8IP90 OMA:ASAYMST Uniprot:Q8IP90
Length = 810
Score = 136 (52.9 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 26/42 (61%), Positives = 34/42 (80%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
++KLFVGML+K+ NE+DVRK+F G IEECTVL+ +G SK
Sbjct: 443 ERKLFVGMLNKKLNENDVRKLFEVHGAIEECTVLRDQNGQSK 484
Score = 41 (19.5 bits), Expect = 8.6e-10, Sum P(2) = 8.6e-10
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 12 PLPPDKKLFVGMLSKQQNE 30
P P + K+FVG + K +E
Sbjct: 352 PDPDNIKMFVGQVPKSMDE 370
>UNIPROTKB|Q5R995 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9601
"Pongo abelii" [GO:0003723 "RNA binding" evidence=ISS] [GO:0043484
"regulation of RNA splicing" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0043484
HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207 CTD:10658 EMBL:CR859496
RefSeq:NP_001125976.1 UniGene:Pab.4290 ProteinModelPortal:Q5R995
SMR:Q5R995 PRIDE:Q5R995 GeneID:100172914 KEGG:pon:100172914
InParanoid:Q5R995 Uniprot:Q5R995
Length = 513
Score = 138 (53.6 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 24/42 (57%), Positives = 34/42 (80%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
D+KLF+GM+SK+ E+D+R +F+ FG IEEC +L GPDG S+
Sbjct: 134 DRKLFIGMISKKCTENDIRVMFSSFGQIEECRILWGPDGLSR 175
Score = 33 (16.7 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 6/15 (40%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
K+FVG + + +E D
Sbjct: 44 KMFVGQVPRTWSEKD 58
>ZFIN|ZDB-GENE-070912-150 [details] [associations]
symbol:si:ch211-168n8.1 "si:ch211-168n8.1"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-070912-150 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00560000076837
EMBL:CT027714 IPI:IPI00833044 Ensembl:ENSDART00000122509
Uniprot:E7F1Z5
Length = 187
Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 24/35 (68%), Positives = 30/35 (85%)
Query: 69 MLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
ML+KQQ E+DV ++F P+G IEECTVL+GPDG SK
Sbjct: 1 MLNKQQTEEDVYRLFEPYGVIEECTVLRGPDGNSK 35
>UNIPROTKB|B3KWE6 [details] [associations]
symbol:BRUNOL6 "cDNA FLJ42868 fis, clone BRHIP2021615,
highly similar to Homo sapiens bruno-like 6, RNA binding protein,
mRNA" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH471082 HOVERGEN:HBG107646 HOGENOM:HOG000004754 EMBL:AC009690
UniGene:Hs.348342 HGNC:HGNC:14059 EMBL:AK124858 IPI:IPI01012509
SMR:B3KWE6 STRING:B3KWE6 Ensembl:ENST00000539635 Uniprot:B3KWE6
Length = 342
Score = 143 (55.4 bits), Expect = 2.3e-09, P = 2.3e-09
Identities = 26/35 (74%), Positives = 30/35 (85%)
Query: 69 MLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
ML KQQ E+DVR++F PFG IEECTVL+ PDGTSK
Sbjct: 1 MLGKQQGEEDVRRLFQPFGHIEECTVLRSPDGTSK 35
>UNIPROTKB|K7ES14 [details] [associations]
symbol:CELF5 "CUGBP Elav-like family member 5" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC005331 EMBL:AC006505 EMBL:AC010649
EMBL:AC123911 HGNC:HGNC:14058 Ensembl:ENST00000588350
Uniprot:K7ES14
Length = 295
Score = 139 (54.0 bits), Expect = 4.4e-09, P = 4.4e-09
Identities = 24/35 (68%), Positives = 32/35 (91%)
Query: 69 MLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
ML+KQQ+E+DV ++F PFG I+ECTVL+GPDG+SK
Sbjct: 1 MLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSK 35
>FB|FBgn0262475 [details] [associations]
symbol:bru-2 "bruno-2" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=ISA] [GO:0003723 "RNA binding" evidence=ISA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014134 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GeneTree:ENSGT00560000076837
RefSeq:NP_001036356.1 UniGene:Dm.412 ProteinModelPortal:Q0E8R3
SMR:Q0E8R3 PRIDE:Q0E8R3 EnsemblMetazoa:FBtr0304856
EnsemblMetazoa:FBtr0332233 GeneID:250811 KEGG:dme:Dmel_CG43065
UCSC:CG31761-RE CTD:250811 FlyBase:FBgn0262475 OMA:AHVANGN
PhylomeDB:Q0E8R3 GenomeRNAi:250811 NextBio:843510 Bgee:Q0E8R3
Uniprot:Q0E8R3
Length = 893
Score = 127 (49.8 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 25/42 (59%), Positives = 32/42 (76%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
++KLFVGML+K+ E DVR++F GTIEECTVL+ G SK
Sbjct: 381 ERKLFVGMLNKKYTEADVRQLFTGHGTIEECTVLRDQAGQSK 422
Score = 32 (16.3 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 18 KLFVGMLSKQQNE 30
K+FVG + K +E
Sbjct: 296 KMFVGQIPKTWDE 308
>TAIR|locus:2825067 [details] [associations]
symbol:BRN2 "Bruno-like 2" species:3702 "Arabidopsis
thaliana" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA;ISS] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13207 IPI:IPI00516617 RefSeq:NP_973752.1
UniGene:At.42544 ProteinModelPortal:F4I0X0 SMR:F4I0X0 PRIDE:F4I0X0
EnsemblPlants:AT1G03457.2 GeneID:839497 KEGG:ath:AT1G03457
OMA:MENEERV Uniprot:F4I0X0
Length = 438
Score = 105 (42.0 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
P+ KLFVGML K +E +V+ +F+ +GTI++ +L+G TSK
Sbjct: 107 PEHKLFVGMLPKNVSETEVQSLFSEYGTIKDLQILRGSLQTSK 149
Score = 35 (17.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 18 KLFVGMLSKQQNE 30
KLFVG + K E
Sbjct: 13 KLFVGQVPKHMTE 25
>TAIR|locus:2139340 [details] [associations]
symbol:RBP-DR1 "RNA-binding protein-defense related 1"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA;ISS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0009626 "plant-type
hypersensitive response" evidence=IMP] [GO:0080151 "positive
regulation of salicylic acid mediated signaling pathway"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 EMBL:CP002687 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0030529 GO:GO:0009626
KO:K13207 eggNOG:NOG251494 OMA:SAMESIN HSSP:Q60900 GO:GO:0080151
EMBL:AY084669 EMBL:AK316961 IPI:IPI00541126 RefSeq:NP_567249.1
UniGene:At.28541 ProteinModelPortal:Q8LFS6 SMR:Q8LFS6 STRING:Q8LFS6
PaxDb:Q8LFS6 PRIDE:Q8LFS6 EnsemblPlants:AT4G03110.1 GeneID:828090
KEGG:ath:AT4G03110 TAIR:At4g03110 InParanoid:Q8LFS6
PhylomeDB:Q8LFS6 ProtClustDB:CLSN2689309 Genevestigator:Q8LFS6
Uniprot:Q8LFS6
Length = 441
Score = 101 (40.6 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
+ KLFVGML K +E +V+ +F+ +GTI++ +L+G TSK
Sbjct: 105 EHKLFVGMLPKNVSEAEVQSLFSKYGTIKDLQILRGAQQTSK 146
Score = 39 (18.8 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 18 KLFVGMLSKQQNEDDNLS 35
KLFVG + K +E L+
Sbjct: 19 KLFVGQIPKHMSESQLLT 36
>DICTYBASE|DDB_G0291486 [details] [associations]
symbol:DDB_G0291486 "putative splicing regulator"
species:44689 "Dictyostelium discoideum" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0291486 EMBL:AAFI02000177
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:NOG251494
RefSeq:XP_635247.1 ProteinModelPortal:Q54EJ3
EnsemblProtists:DDB0233674 GeneID:8628193 KEGG:ddi:DDB_G0291486
InParanoid:Q54EJ3 OMA:PMGNGMN Uniprot:Q54EJ3
Length = 489
Score = 108 (43.1 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
KLFVGML + E+ +R++F P G +E+ +L+GP+ SK
Sbjct: 92 KLFVGMLPRSYEEEQIRELFEPHGVVEDICILRGPNSESK 131
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 92 (37.4 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 65 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
L+V L + +D +R+ FAPFGTI C V++ P G S+
Sbjct: 329 LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVSR 367
Score = 38 (18.4 bits), Expect = 4.4e-05, Sum P(2) = 4.4e-05
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 16 DKKLFVGMLSKQQNEDDNLSHCF 38
DK+ FVG K+ + L F
Sbjct: 291 DKEWFVGKAQKKSERETELKQKF 313
>UNIPROTKB|J3KTC1 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 Ensembl:ENST00000579590 Uniprot:J3KTC1
Length = 141
Score = 95 (38.5 bits), Expect = 6.3e-05, P = 6.3e-05
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 53 IWTCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98
+ T P K+F+G LS Q + D +R F+ FG I EC V++ P
Sbjct: 7 VLTSVMFSPSSKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDP 52
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 90 (36.7 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 65 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
L+V L ++ +R++FA FGTI C V++ P GTSK
Sbjct: 330 LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTSK 368
Score = 38 (18.4 bits), Expect = 7.0e-05, Sum P(2) = 7.0e-05
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 16 DKKLFVG-MLSKQQNE 30
DK++FVG L K++ E
Sbjct: 201 DKQIFVGPFLRKEERE 216
Score = 33 (16.7 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 16 DKKLFVGMLSKQQNEDDNLS 35
DK+ +VG K+ + LS
Sbjct: 292 DKEWYVGKAQKKSERELELS 311
>UNIPROTKB|Q7ZYE9 [details] [associations]
symbol:hnrnpab "Hnrpab-prov protein" species:8355 "Xenopus
laevis" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 HSSP:Q14103 KO:K13044 InterPro:IPR012956
Pfam:PF08143 CTD:3182 EMBL:BC043814 RefSeq:NP_001080489.1
UniGene:Xl.45404 ProteinModelPortal:Q7ZYE9 SMR:Q7ZYE9 IntAct:Q7ZYE9
GeneID:380181 KEGG:xla:380181 Xenbase:XB-GENE-6043063
Uniprot:Q7ZYE9
Length = 324
Score = 78 (32.5 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 18/43 (41%), Positives = 25/43 (58%)
Query: 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
P KK+FVG L+ + ED +R+ F FG IE + P T+K
Sbjct: 146 PIKKIFVGGLNPEAGEDQIREYFETFGEIEAIELPMDPK-TNK 187
Score = 38 (18.4 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 9/22 (40%), Positives = 13/22 (59%)
Query: 11 TPLPPDKKLFVGMLSKQQNEDD 32
+PL K+FVG LS ++ D
Sbjct: 58 SPLTEGVKMFVGGLSWDTSKKD 79
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 84 (34.6 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 23/57 (40%), Positives = 28/57 (49%)
Query: 54 WTCTPLPPDKK------LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG-PDGTSK 103
W TP K +FVG LS + DD+R FAPFG I + V+K G SK
Sbjct: 100 WATTPSSQKKDTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSK 156
Score = 33 (16.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 17 KKLFVGMLSKQQNED 31
K L+VG LS+ E+
Sbjct: 8 KTLYVGNLSRDVTEN 22
>UNIPROTKB|Q6K271 [details] [associations]
symbol:P0415D04.46-1 "FCA" species:39947 "Oryza sativa
Japonica Group" [GO:0003723 "RNA binding" evidence=ISS] [GO:0009909
"regulation of flower development" evidence=ISS] [GO:0044428
"nuclear part" evidence=ISS] InterPro:IPR000504 InterPro:IPR001202
InterPro:IPR002343 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397
PRINTS:PR00961 PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360
SMART:SM00456 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0009790 GO:GO:0031048 GO:GO:0009909 GO:GO:0009553
Gene3D:2.20.70.10 SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY654584
EMBL:AY730687 EMBL:AP006062 EnsemblPlants:LOC_Os09g03610.1
EnsemblPlants:LOC_Os09g03610.2 OMA:WTEHTSP Uniprot:Q6K271
Length = 738
Score = 83 (34.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100
+ KLFV L+KQ ++ +IFAP+G +E+ ++K DG
Sbjct: 212 EHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIMK--DG 248
Score = 40 (19.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLF+G + + EDD
Sbjct: 123 KLFIGSVPRTATEDD 137
>UNIPROTKB|Q6WQT6 [details] [associations]
symbol:Q6WQT6 "Flowering time control protein isoform
OsFCA-1" species:39946 "Oryza sativa Indica Group" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0009909 "regulation of flower
development" evidence=ISS] [GO:0044428 "nuclear part" evidence=ISS]
InterPro:IPR000504 InterPro:IPR001202 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00397 PRINTS:PR00961
PROSITE:PS50020 PROSITE:PS50102 SMART:SM00360 SMART:SM00456
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009790
GO:GO:0031048 GO:GO:0009909 GO:GO:0009553 Gene3D:2.20.70.10
SUPFAM:SSF51045 GO:GO:0044428 EMBL:AY274928
ProteinModelPortal:Q6WQT6 KEGG:dosa:Os09t0123200-01 Gramene:Q6WQT6
Uniprot:Q6WQT6
Length = 738
Score = 83 (34.3 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100
+ KLFV L+KQ ++ +IFAP+G +E+ ++K DG
Sbjct: 212 EHKLFVASLNKQATAKEIEEIFAPYGHVEDVYIMK--DG 248
Score = 40 (19.1 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 18 KLFVGMLSKQQNEDD 32
KLF+G + + EDD
Sbjct: 123 KLFIGSVPRTATEDD 137
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 85 (35.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 65 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
L+V L +++ +++IF+PFGT+ V++ P+GTSK
Sbjct: 320 LYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNGTSK 358
Score = 36 (17.7 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 16 DKKLFVGMLSKQQNED 31
DK+++VG ++Q D
Sbjct: 191 DKQVYVGPFLRRQERD 206
Score = 32 (16.3 bits), Expect = 0.00083, Sum P(2) = 0.00083
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 16 DKKLFVGMLSKQQNEDDNL 34
DK+ +VG K+ + L
Sbjct: 282 DKEWYVGRAQKKSERETEL 300
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 85 (35.0 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 57 TPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
TP P ++V L K+ ED++RK F FG I V++ G S+
Sbjct: 223 TPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSR 269
Score = 36 (17.7 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 16 DKKLFVGMLSKQQNE--DDN 33
DK++FVG ++Q D+N
Sbjct: 203 DKQVFVGHFIRRQERARDEN 222
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 75 (31.5 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 65 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG-PDGTSK 103
+FVG LS + +D++ FAPFG I + V+K G SK
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSK 147
Score = 32 (16.3 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 17 KKLFVGMLSKQQNE 30
K L+VG LS+ E
Sbjct: 7 KTLYVGNLSRDVTE 20
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 82 (33.9 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 65 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG-PDGTSK 103
+FVG LS + DD+R FAPFG I + V+K G SK
Sbjct: 98 VFVGDLSPEITTDDIRAAFAPFGRISDARVVKDMATGKSK 137
Score = 32 (16.3 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 17 KKLFVGMLSKQQNE 30
K L+VG LS+ E
Sbjct: 8 KTLYVGNLSRDVTE 21
>MGI|MGI:2655711 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:2655711
GO:GO:0005794 GO:GO:0005730 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
eggNOG:COG0724 GeneTree:ENSGT00550000074976 KO:K14573 EMBL:AC153909
CTD:55131 HOVERGEN:HBG073213 OrthoDB:EOG4SN1NH EMBL:AK012408
EMBL:AK013047 EMBL:AK019296 EMBL:AK019436 EMBL:AK156773
EMBL:BC018373 EMBL:BC040811 IPI:IPI00229472 RefSeq:NP_598686.2
UniGene:Mm.40802 PDB:1X4H PDBsum:1X4H ProteinModelPortal:Q8CGC6
SMR:Q8CGC6 DIP:DIP-58949N STRING:Q8CGC6 PhosphoSite:Q8CGC6
PaxDb:Q8CGC6 PRIDE:Q8CGC6 Ensembl:ENSMUST00000007993 GeneID:68272
KEGG:mmu:68272 UCSC:uc009bcx.2 InParanoid:Q8CGC6 OMA:SASASXA
EvolutionaryTrace:Q8CGC6 NextBio:326882 Bgee:Q8CGC6
CleanEx:MM_RBM28 Genevestigator:Q8CGC6
GermOnline:ENSMUSG00000029701 Uniprot:Q8CGC6
Length = 750
Score = 78 (32.5 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 17/41 (41%), Positives = 26/41 (63%)
Query: 62 DKK--LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100
DKK L + LS + +EDD++ +F +GT+ E + K PDG
Sbjct: 111 DKKARLIIRNLSFKCSEDDLKAVFTHYGTVLEVNIPKKPDG 151
Score = 43 (20.2 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 19 LFVGMLSKQQNEDDNLSHCFHLLFPHLQCF 48
LFVG L D L F + P QCF
Sbjct: 6 LFVGRLPPSARSDQ-LEELFSQVGPVKQCF 34
>UNIPROTKB|J3QKT5 [details] [associations]
symbol:MSI2 "RNA-binding protein Musashi homolog 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:18585 ChiTaRS:MSI2 EMBL:AC005325 EMBL:AC007431
EMBL:AC015883 EMBL:AC091181 ProteinModelPortal:J3QKT5
Ensembl:ENST00000581776 Uniprot:J3QKT5
Length = 99
Score = 86 (35.3 bits), Expect = 0.00057, P = 0.00057
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98
K+F+G LS Q + D +R F+ FG I EC V++ P
Sbjct: 22 KMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDP 56
>UNIPROTKB|D4A5K7 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28 (Predicted),
isoform CRA_b" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005794 "Golgi apparatus" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1311336 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:CH473959 EMBL:AC096035 GeneTree:ENSGT00550000074976 KO:K14573
CTD:55131 IPI:IPI00949364 RefSeq:NP_001101320.1 UniGene:Rn.50022
Ensembl:ENSRNOT00000064007 GeneID:312182 KEGG:rno:312182
NextBio:664628 Uniprot:D4A5K7
Length = 700
Score = 76 (31.8 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 62 DKK--LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100
DKK L + LS + +EDD++ +F +GT+ E + + PDG
Sbjct: 111 DKKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDG 151
Score = 43 (20.2 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 19 LFVGMLSKQQNEDDNLSHCFHLLFPHLQCF 48
LFVG L D L F + P QCF
Sbjct: 6 LFVGRLPPSARSDQ-LEELFSQVGPVKQCF 34
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 77 (32.2 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 54 WTCTPLPPDKK------LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG-PDGTSK 103
W TP K +FVG LS + +D++ FAPFG I + V+K G SK
Sbjct: 76 WATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSK 132
Score = 32 (16.3 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 17 KKLFVGMLSKQQNE 30
K L+VG LS+ E
Sbjct: 3 KTLYVGNLSRDVTE 16
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 77 (32.2 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 21/57 (36%), Positives = 28/57 (49%)
Query: 54 WTCTPLPPDKK------LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKG-PDGTSK 103
W TP K +FVG LS + +D++ FAPFG I + V+K G SK
Sbjct: 80 WATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSK 136
Score = 32 (16.3 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 17 KKLFVGMLSKQQNE 30
K L+VG LS+ E
Sbjct: 7 KTLYVGNLSRDVTE 20
>RGD|1311336 [details] [associations]
symbol:Rbm28 "RNA binding motif protein 28" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0005794 "Golgi apparatus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1311336 GO:GO:0005794
GO:GO:0005730 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AC096035 OrthoDB:EOG4SN1NH IPI:IPI00373266
ProteinModelPortal:D4A618 Ensembl:ENSRNOT00000007777
UCSC:RGD:1311336 ArrayExpress:D4A618 Uniprot:D4A618
Length = 749
Score = 76 (31.8 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 62 DKK--LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100
DKK L + LS + +EDD++ +F +GT+ E + + PDG
Sbjct: 111 DKKARLIIRNLSFKCSEDDLKSVFTHYGTVLEVNIPRKPDG 151
Score = 43 (20.2 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 19 LFVGMLSKQQNEDDNLSHCFHLLFPHLQCF 48
LFVG L D L F + P QCF
Sbjct: 6 LFVGRLPPSARSDQ-LEELFSQVGPVKQCF 34
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 80 (33.2 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 57 TPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98
T + +FVG LS + + +R+ FAPFG I C +++ P
Sbjct: 89 TDISSHHHIFVGDLSPEIETETLREAFAPFGEISNCRIVRDP 130
Score = 34 (17.0 bits), Expect = 0.00085, Sum P(2) = 0.00085
Identities = 11/31 (35%), Positives = 14/31 (45%)
Query: 17 KKLFVGMLSKQQNEDDNLSHCFHLLFPHLQC 47
K L+VG L +ED L F + P C
Sbjct: 7 KTLYVGNLDSSVSED-LLIALFSTMGPVKSC 36
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 89 (36.4 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
P LF+ L +D +RK+F PFG I EC V+ +G SK
Sbjct: 195 PSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSK 237
Score = 31 (16.0 bits), Expect = 0.00093, Sum P(2) = 0.00093
Identities = 5/11 (45%), Positives = 10/11 (90%)
Query: 24 LSKQQNEDDNL 34
+++QQNE+ +L
Sbjct: 53 INQQQNENQSL 63
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.143 0.487 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 103 103 0.00091 102 3 12 22 0.40 30
29 0.49 31
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 99
No. of states in DFA: 476 (51 KB)
Total size of DFA: 97 KB (2070 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 8.98u 0.16s 9.14t Elapsed: 00:00:01
Total cpu time: 8.98u 0.16s 9.14t Elapsed: 00:00:01
Start: Thu Aug 15 14:34:03 2013 End: Thu Aug 15 14:34:04 2013