RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy10284
(103 letters)
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 42.5 bits (100), Expect = 4e-07
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Query: 58 PLPPDKKLFVGMLSKQQ-NEDDVRKIFAPFGTIEECTVLKG 97
P + ++F+G L+ + DV IF+ +G I C+V KG
Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHKG 51
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 41.5 bits (97), Expect = 8e-07
Identities = 11/44 (25%), Positives = 22/44 (50%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
K+ V + Q N+ ++R++F+ FG ++ + K GT
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGA 49
Score = 24.9 bits (54), Expect = 1.4
Identities = 6/45 (13%), Positives = 11/45 (24%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
K+ V + Q N+ + P + T
Sbjct: 6 QTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAH 50
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 40.3 bits (94), Expect = 2e-06
Identities = 10/37 (27%), Positives = 19/37 (51%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96
P + ++ G ++ + +R+ F+PFG I E V
Sbjct: 16 PKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP 52
Score = 24.9 bits (54), Expect = 1.1
Identities = 3/34 (8%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQC 47
P + ++ G ++ + + F ++
Sbjct: 16 PKNCTVYCGGIASGLTDQL-MRQTFSPFGQIMEI 48
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 40.0 bits (92), Expect = 1e-05
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+KLF+G LS + ++ +R F +GT+ +C
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDC 36
Score = 25.3 bits (54), Expect = 1.4
Identities = 17/129 (13%), Positives = 32/129 (24%), Gaps = 45/129 (34%)
Query: 16 DKKLFVGMLSKQQNEDD------------------------------------------- 32
+KLF+G LS + ++
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM 65
Query: 33 --NLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIE 90
+ + + KK+FVG + + E +R F +G IE
Sbjct: 66 NARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIE 125
Query: 91 ECTVLKGPD 99
++
Sbjct: 126 VIEIMTDRG 134
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 38.4 bits (89), Expect = 1e-05
Identities = 10/33 (30%), Positives = 15/33 (45%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96
L+VG L E + + F+P G I V +
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCR 34
Score = 23.0 bits (49), Expect = 5.5
Identities = 11/64 (17%), Positives = 15/64 (23%), Gaps = 8/64 (12%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQNED 77
L+VG L E L F P + +V Q
Sbjct: 2 SLYVGDLHPDVTEAM-LYEKFS---PAGPILSIRVCRDMITRRSLGYAYVNF----QQPA 53
Query: 78 DVRK 81
D +
Sbjct: 54 DAER 57
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 38.0 bits (88), Expect = 1e-05
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96
KL V L ++ D++++FA FGT+++ V
Sbjct: 2 KLLVSNLDFGVSDADIQELFAEFGTLKKAAVHY 34
Score = 24.5 bits (53), Expect = 1.4
Identities = 8/64 (12%), Positives = 16/64 (25%), Gaps = 5/64 (7%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQNED 77
KL V L ++ D + F + + V K
Sbjct: 2 KLLVSNLDFGVSDAD-IQELFAEFGTLKKAA----VHYDRSGRSLGTADVHFERKADALK 56
Query: 78 DVRK 81
+++
Sbjct: 57 AMKQ 60
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 38.0 bits (88), Expect = 1e-05
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
D L+V L + +D + IF +G+I +
Sbjct: 6 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQK 36
Score = 24.1 bits (52), Expect = 2.2
Identities = 10/43 (23%), Positives = 14/43 (32%), Gaps = 1/43 (2%)
Query: 16 DKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
D L+V L + +D L F +Q T P
Sbjct: 6 DTNLYVTNLPRTITDDQ-LDTIFGKYGSIVQKNILRDKLTGRP 47
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 37.3 bits (86), Expect = 3e-05
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+ L V L + + ++ +F G I C
Sbjct: 2 NTNLIVNYLPQDMTDRELYALFRAIGPINTC 32
Score = 22.6 bits (48), Expect = 8.3
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 1/43 (2%)
Query: 16 DKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
+ L V L + + + L F + P C T
Sbjct: 2 NTNLIVNYLPQDMTDRE-LYALFRAIGPINTCRIMRDYKTGYS 43
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 36.6 bits (84), Expect = 5e-05
Identities = 8/31 (25%), Positives = 16/31 (51%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
D L+V L K + ++ ++F+ +G I
Sbjct: 6 DANLYVSGLPKTMTQKELEQLFSQYGRIITS 36
Score = 24.6 bits (53), Expect = 1.5
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 1/43 (2%)
Query: 16 DKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
D L+V L K + + L F + T
Sbjct: 6 DANLYVSGLPKTMTQKE-LEQLFSQYGRIITSRILVDQVTGVS 47
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 36.6 bits (84), Expect = 5e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
P+ L V LS E D+R++F+ +G I +
Sbjct: 7 DPNCCLGVFGLSLYTTERDLREVFSKYGPIADV 39
Score = 29.7 bits (66), Expect = 0.019
Identities = 10/45 (22%), Positives = 12/45 (26%), Gaps = 1/45 (2%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
P+ L V LS E D L F P +
Sbjct: 7 DPNCCLGVFGLSLYTTERD-LREVFSKYGPIADVSIVYDQQSRRS 50
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 36.3 bits (83), Expect = 7e-05
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98
++L+VG + E+ + F + T G
Sbjct: 2 RRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGN 37
Score = 23.2 bits (49), Expect = 4.9
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 17 KKLFVGMLSKQQNEDDNLSHC 37
++L+VG + E+ +
Sbjct: 2 RRLYVGNIPFGITEEAMMDFF 22
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 35.7 bits (82), Expect = 1e-04
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
K+F+G LS Q ++ +R+ F FG ++EC
Sbjct: 2 KMFIGGLSWQTTQEGLREYFGQFGEVKEC 30
Score = 25.3 bits (55), Expect = 0.66
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
K+F+G LS Q ++ L F +C T
Sbjct: 2 KMFIGGLSWQTTQEG-LREYFGQFGEVKECLVMRDPLTKRS 41
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 35.8 bits (82), Expect = 1e-04
Identities = 7/33 (21%), Positives = 16/33 (48%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
D ++VG L ++ +E + ++F G +
Sbjct: 7 NQDATVYVGGLDEKVSEPLLWELFLQAGPVVNT 39
Score = 27.3 bits (60), Expect = 0.15
Identities = 9/45 (20%), Positives = 15/45 (33%), Gaps = 1/45 (2%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
D ++VG L ++ +E L F P + T
Sbjct: 7 NQDATVYVGGLDEKVSEPL-LWELFLQAGPVVNTHMPKDRVTGQH 50
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 35.3 bits (81), Expect = 1e-04
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
K+FVG LS E+ +R+ F FG +E
Sbjct: 1 KIFVGGLSPDTPEEKIREYFGGFGEVESI 29
Score = 24.9 bits (54), Expect = 0.88
Identities = 13/64 (20%), Positives = 22/64 (34%), Gaps = 8/64 (12%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSKQQNED 77
K+FVG LS E+ + F + +L F+ + E+
Sbjct: 1 KIFVGGLSPDTPEEK-IREYFG---GFGEVESIELPMDNKTNKRRGFCFITF----KEEE 52
Query: 78 DVRK 81
V+K
Sbjct: 53 PVKK 56
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 35.8 bits (82), Expect = 2e-04
Identities = 9/36 (25%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 59 LPPD--KKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
LPP+ + L++ L + +++ IF +G I +
Sbjct: 2 LPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQI 37
Score = 24.2 bits (52), Expect = 2.4
Identities = 5/27 (18%), Positives = 12/27 (44%), Gaps = 2/27 (7%)
Query: 13 LPPD--KKLFVGMLSKQQNEDDNLSHC 37
LPP+ + L++ L + ++
Sbjct: 2 LPPEVNRILYIRNLPYKITAEEMYDIF 28
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 35.0 bits (80), Expect = 2e-04
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 65 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
LF+ L+ E+ ++ +F+ G I+ CT+ K +
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGV 39
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 34.7 bits (79), Expect = 3e-04
Identities = 11/33 (33%), Positives = 16/33 (48%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96
KL++G LS DD+R++F VL
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL 35
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 34.9 bits (80), Expect = 3e-04
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
L L+VG LS E+ + ++F+ G I++
Sbjct: 4 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKI 37
Score = 23.8 bits (51), Expect = 3.6
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 1/44 (2%)
Query: 13 LPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
L L+VG LS E+ + F +
Sbjct: 4 LKKSCTLYVGNLSFYTTEEQ-IYELFSKSGDIKKIIMGLDKMKK 46
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 34.3 bits (78), Expect = 3e-04
Identities = 9/39 (23%), Positives = 17/39 (43%)
Query: 65 LFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
+F+G L + +E + F+ FG I + + T
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGN 39
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 34.2 bits (78), Expect = 4e-04
Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD-GTSK 103
+KLF+G LS + ++ +R F +GT+ +C V++ P+ S+
Sbjct: 6 LRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSR 48
Score = 25.0 bits (54), Expect = 1.0
Identities = 10/43 (23%), Positives = 15/43 (34%), Gaps = 1/43 (2%)
Query: 16 DKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
+KLF+G LS + ++ L F C T
Sbjct: 6 LRKLFIGGLSFETTDES-LRSHFEQWGTLTDCVVMRDPNTKRS 47
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 33.9 bits (77), Expect = 5e-04
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+ L+VG L+++ ++ + F PFG I +
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDI 35
Score = 23.5 bits (50), Expect = 4.3
Identities = 7/45 (15%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
+ L+VG L+++ ++ L F T
Sbjct: 3 TTKRVLYVGGLAEEVDDKV-LHAAFIPFGDITDIQIPLDYETEKH 46
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 33.9 bits (77), Expect = 6e-04
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
K+L V + + + D+R++F FG I +
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDV 41
Score = 25.4 bits (55), Expect = 0.83
Identities = 4/43 (9%), Positives = 11/43 (25%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
K+L V + + + D ++ +
Sbjct: 9 STPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSK 51
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 33.9 bits (77), Expect = 7e-04
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
D +++VG L D+ +F +G I +
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDI 44
Score = 26.2 bits (57), Expect = 0.39
Identities = 5/43 (11%), Positives = 9/43 (20%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
D +++VG L D +
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPP 54
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 34.0 bits (77), Expect = 7e-04
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGP 98
+ ++V L+ DD+ F G ++ P
Sbjct: 6 SDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQP 44
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 33.4 bits (76), Expect = 8e-04
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+LFVG L E+++RK+F +G E
Sbjct: 10 RLFVGNLPPDITEEEMRKLFEKYGKAGEV 38
Score = 25.7 bits (56), Expect = 0.55
Identities = 8/39 (20%), Positives = 13/39 (33%), Gaps = 1/39 (2%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
+LFVG L E++ + F + F
Sbjct: 10 RLFVGNLPPDITEEE-MRKLFEKYGKAGEVFIHKDKGFG 47
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 33.5 bits (76), Expect = 9e-04
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100
+F+ L K + + F+ FG I C V+ +G
Sbjct: 10 NIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG 46
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 33.5 bits (76), Expect = 9e-04
Identities = 5/30 (16%), Positives = 13/30 (43%)
Query: 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+ +F L+ + D+ F+ G + +
Sbjct: 19 RTVFCMQLAARIRPRDLEDFFSAVGKVRDV 48
Score = 22.7 bits (48), Expect = 9.3
Identities = 5/42 (11%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 17 KKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
+ +F L+ + D L F + +
Sbjct: 19 RTVFCMQLAARIRPRD-LEDFFSAVGKVRDVRIISDRNSRRS 59
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 33.1 bits (75), Expect = 0.001
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+ L+VG LS+ E + ++F+ G + C
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSC 38
Score = 24.2 bits (52), Expect = 1.9
Identities = 7/43 (16%), Positives = 12/43 (27%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
+ L+VG LS+ E L + +
Sbjct: 6 GQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSND 48
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 33.6 bits (76), Expect = 0.001
Identities = 9/37 (24%), Positives = 16/37 (43%)
Query: 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99
F G L Q +D+ +F+ G I+ ++G
Sbjct: 12 LLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK 48
Score = 24.0 bits (51), Expect = 3.1
Identities = 5/16 (31%), Positives = 6/16 (37%)
Query: 17 KKLFVGMLSKQQNEDD 32
F G L Q +D
Sbjct: 12 LLKFSGDLDDQTCRED 27
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 32.6 bits (74), Expect = 0.001
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99
K+F+G LS + D++ F+ FG + +CT+ P
Sbjct: 1 KMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPI 36
Score = 26.9 bits (59), Expect = 0.20
Identities = 10/41 (24%), Positives = 14/41 (34%), Gaps = 1/41 (2%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
K+F+G LS + D L F + C T
Sbjct: 1 KMFIGGLSWDTTKKD-LKDYFSKFGEVVDCTLKLDPITGRS 40
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 33.1 bits (75), Expect = 0.001
Identities = 5/29 (17%), Positives = 13/29 (44%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+LF+G + K + +++ + A
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLD 31
Score = 24.3 bits (52), Expect = 2.4
Identities = 6/39 (15%), Positives = 14/39 (35%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
+LF+G + K + ++ L + L +
Sbjct: 3 RLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADK 41
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 33.1 bits (75), Expect = 0.001
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDG 100
+KLF+G LS + E+ +R + +G + +C V++ P
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPAS 58
Score = 24.3 bits (52), Expect = 2.4
Identities = 7/36 (19%), Positives = 13/36 (36%)
Query: 15 PDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPW 50
+KLF+G LS + E+ ++
Sbjct: 19 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMR 54
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 32.5 bits (73), Expect = 0.002
Identities = 2/31 (6%), Positives = 10/31 (32%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+ L++ + ++R + +
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALS 31
Score = 23.6 bits (50), Expect = 3.5
Identities = 2/43 (4%), Positives = 10/43 (23%), Gaps = 1/43 (2%)
Query: 16 DKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
+ L++ + + + + + T
Sbjct: 1 ECTLWMTNFPPSYTQRN-IRDLLQDINVVALSIRLPSLRFNTS 42
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 32.0 bits (72), Expect = 0.002
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
K+FVG LS +DV+ F FG +++
Sbjct: 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDA 29
Score = 27.4 bits (60), Expect = 0.14
Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
K+FVG LS +D + H F T
Sbjct: 1 KIFVGGLSVNTTVED-VKHYFEQFGKVDDAMLMFDKTTNRH 40
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 32.3 bits (73), Expect = 0.002
Identities = 9/33 (27%), Positives = 15/33 (45%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
P +L+VG L + + + F FG+I
Sbjct: 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTI 47
Score = 31.6 bits (71), Expect = 0.005
Identities = 7/45 (15%), Positives = 11/45 (24%), Gaps = 1/45 (2%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
P +L+VG L + L+ F
Sbjct: 15 NPTTRLWVGGLGPNTSLAA-LAREFDRFGSIRTIDHVKGDSFAYI 58
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding
protein 1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.0 bits (72), Expect = 0.003
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
P LF+ L ++ + D+ ++F PFG +
Sbjct: 16 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSA 48
Score = 30.0 bits (67), Expect = 0.019
Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 1/45 (2%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
P LF+ L ++ + D L F + + T
Sbjct: 16 PEGANLFIYHLPQEFGDQD-LLQMFMPFGNVVSAKVFIDKQTNLS 59
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 31.9 bits (72), Expect = 0.003
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGT 101
+ L LS ED+++++F I + G
Sbjct: 15 AARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGI 55
Score = 23.1 bits (49), Expect = 5.3
Identities = 6/42 (14%), Positives = 9/42 (21%), Gaps = 5/42 (11%)
Query: 15 PDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
+ L LS ED+ +F
Sbjct: 15 AARTLLAKNLSFNITEDE-----LKEVFEDALEIRLVSQDGK 51
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 32.1 bits (72), Expect = 0.003
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 57 TPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
P P+K L++ LS + E D+ +FA F +
Sbjct: 13 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGP 48
Score = 30.9 bits (69), Expect = 0.011
Identities = 9/46 (19%), Positives = 17/46 (36%)
Query: 11 TPLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
P P+K L++ LS + E D +S + ++
Sbjct: 13 NPGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGR 58
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.5 bits (71), Expect = 0.005
Identities = 8/33 (24%), Positives = 17/33 (51%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+FVG + ED++R+ F+ +G + +
Sbjct: 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDV 35
Score = 26.1 bits (57), Expect = 0.40
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 1/44 (2%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCT 57
+FVG + ED+ L F + F
Sbjct: 3 SGSSGVFVGRCTGDMTEDE-LREFFSQYGDVMDVFIPKPFRAFA 45
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.6 bits (71), Expect = 0.005
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 58 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 94
P P F+G L E+ +++ F
Sbjct: 11 PKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLP 47
Score = 28.9 bits (64), Expect = 0.047
Identities = 9/47 (19%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
P P F+G L E+ + F L P +
Sbjct: 11 PKSPPYTAFLGNLPYDVTEES-IKEFFRGLNISAVRLPREPSNPERL 56
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 31.5 bits (71), Expect = 0.005
Identities = 5/41 (12%), Positives = 13/41 (31%)
Query: 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
+ + + E+ ++ +G +EE V
Sbjct: 28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLV 68
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 31.6 bits (71), Expect = 0.005
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+LFV LS +E+D+ K+F+ +G + E
Sbjct: 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSEL 38
Score = 26.2 bits (57), Expect = 0.52
Identities = 12/45 (26%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
+LFV LS +E+D L F P + T P
Sbjct: 6 SGSGRLFVRNLSYTSSEED-LEKLFSAYGPLSELHYPIDSLTKKP 49
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 31.3 bits (70), Expect = 0.005
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 59 LPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
PP L + + +E+D++ +F+ G + +
Sbjct: 7 FPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKG 40
Score = 24.7 bits (53), Expect = 1.5
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 13 LPPDKKLFVGMLSKQQNEDDNLSHCFH 39
PP L + + +E+D
Sbjct: 7 FPPSATLHLSNIPPSVSEEDLKVLFSS 33
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 31.1 bits (70), Expect = 0.006
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
L V L + E D+++ F+ FG +
Sbjct: 7 KTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMV 38
Score = 27.2 bits (60), Expect = 0.15
Identities = 9/44 (20%), Positives = 11/44 (25%), Gaps = 1/44 (2%)
Query: 15 PDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
L V L + E D L F L + T
Sbjct: 7 KTSDLIVLGLPWKTTEQD-LKEYFSTFGEVLMVQVKKDLKTGHS 49
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 30.4 bits (68), Expect = 0.014
Identities = 4/44 (9%), Positives = 16/44 (36%)
Query: 15 PDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
P+ +++ L+++ +D+ + Q + +
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKM 45
Score = 28.1 bits (62), Expect = 0.095
Identities = 10/38 (26%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 61 PDKKLFVGMLSKQQNEDDVRK----IFAPFGTIEECTV 94
P+ +++ L+++ +D+++K IF+ FG I + V
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILV 39
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 30.1 bits (67), Expect = 0.016
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
L V L + +++ R +F G IE C
Sbjct: 4 NLIVNYLPQNMTQEEFRSLFGSIGEIESC 32
Score = 23.5 bits (50), Expect = 3.1
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 1/39 (2%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
L V L + +++ F + C T
Sbjct: 4 NLIVNYLPQNMTQEE-FRSLFGSIGEIESCKLVRDKITG 41
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 30.0 bits (67), Expect = 0.017
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 64 KLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
KLF+G L N+D V+++ FG ++
Sbjct: 3 KLFIGGLPNYLNDDQVKELLTSFGPLKAF 31
Score = 26.9 bits (59), Expect = 0.21
Identities = 9/41 (21%), Positives = 12/41 (29%), Gaps = 1/41 (2%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTP 58
KLF+G L N+D + P T
Sbjct: 3 KLFIGGLPNYLNDDQ-VKELLTSFGPLKAFNLVKDSATGLS 42
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP
A1, UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 29.7 bits (66), Expect = 0.020
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
KK+FVG + + E +R F +G IE
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVI 32
Score = 28.9 bits (64), Expect = 0.034
Identities = 7/40 (17%), Positives = 12/40 (30%)
Query: 17 KKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
KK+FVG + + E + + D
Sbjct: 3 KKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGK 42
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 29.6 bits (66), Expect = 0.025
Identities = 9/34 (26%), Positives = 13/34 (38%)
Query: 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLK 96
K L+V L +E+ + K F V K
Sbjct: 9 KILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK 42
Score = 22.3 bits (47), Expect = 9.7
Identities = 6/22 (27%), Positives = 10/22 (45%), Gaps = 1/22 (4%)
Query: 17 KKLFVGMLSKQQNEDDNLSHCF 38
K L+V L +E+ + F
Sbjct: 9 KILYVRNLMLSTSEEM-IEKEF 29
>d1grja2 d.26.1.2 (A:80-158) GreA transcript cleavage factor,
C-terminal domain {Escherichia coli [TaxId: 562]}
Length = 79
Score = 29.0 bits (65), Expect = 0.028
Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 13 LPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLSK 72
+P + ++ G N D + + + + + + + + G++ K
Sbjct: 1 MPNNGRVIFGATVTVLNLDSDEEQTYRI------VGDDEADFKQNLISVNSPIARGLIGK 54
Query: 73 QQNEDDVRKIFAPFGTIE 90
+ EDDV I P G +E
Sbjct: 55 E--EDDVVVIKTPGGEVE 70
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 29.2 bits (65), Expect = 0.029
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+ + V LS+ E D++++F PFG+I
Sbjct: 6 DDNATIRVTNLSEDTRETDLQELFRPFGSISRI 38
Score = 25.4 bits (55), Expect = 0.88
Identities = 9/54 (16%), Positives = 14/54 (25%), Gaps = 1/54 (1%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFV 67
+ + V LS+ E D L F + + T F
Sbjct: 6 DDNATIRVTNLSEDTRETD-LQELFRPFGSISRIYLAKDKTTGQSKGFAFISFH 58
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 29.2 bits (65), Expect = 0.036
Identities = 9/34 (26%), Positives = 16/34 (47%)
Query: 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 94
P ++ V L D + +IF+ FGT+ +
Sbjct: 6 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIIT 39
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 29.4 bits (65), Expect = 0.039
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTV 94
+ V L + E D+ + FGTI +
Sbjct: 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMM 47
Score = 28.6 bits (63), Expect = 0.064
Identities = 11/91 (12%), Positives = 21/91 (23%), Gaps = 2/91 (2%)
Query: 14 PPDKKLFVGMLSKQQNEDD--NLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFVGMLS 71
+ V L + E D F + + K V +
Sbjct: 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAA 72
Query: 72 KQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102
++ F + T + T +S
Sbjct: 73 DVPVYIAGQQAFFNYSTSKRITRPGNSGPSS 103
>d3begb1 d.58.7.1 (B:121-207) Splicing factor,
arginine/serine-rich 1, SFRS1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 87
Score = 29.1 bits (64), Expect = 0.040
Identities = 5/40 (12%), Positives = 8/40 (20%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCT 57
++ V L + D H D
Sbjct: 2 RVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVE 41
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 28.9 bits (64), Expect = 0.043
Identities = 5/33 (15%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 61 PDKKLFVGMLSKQQN-EDDVRKIFAPFGTIEEC 92
+ + + + +N + ++ PFG I
Sbjct: 7 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNH 39
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 28.2 bits (62), Expect = 0.079
Identities = 8/48 (16%), Positives = 11/48 (22%), Gaps = 4/48 (8%)
Query: 13 LPPD----KKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
LP D K +F+ LS E+
Sbjct: 1 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEH 48
Score = 28.2 bits (62), Expect = 0.085
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 59 LPPD----KKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
LP D K +F+ LS E+ + ++ FG ++
Sbjct: 1 LPSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYV 38
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 28.1 bits (62), Expect = 0.10
Identities = 5/38 (13%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 57 TPLPPDKKLFVGM--LSKQQNEDDVRKIFAPFGTIEEC 92
T + L V L + + + + G ++
Sbjct: 13 TVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDAL 50
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 27.8 bits (61), Expect = 0.11
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 65 LFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
LFV + ++ ED++++ F +G I+
Sbjct: 10 LFVTSIHEEAQEDEIQEKFCDYGEIKNI 37
Score = 23.5 bits (50), Expect = 3.4
Identities = 7/49 (14%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 19 LFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCTPLPPDKKLFV 67
LFV + ++ ED+ + F T +
Sbjct: 10 LFVTSIHEEAQEDE-IQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYE 57
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 27.5 bits (60), Expect = 0.12
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
PP++ LF+ L ++ NE + +F F +E
Sbjct: 6 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEV 38
Score = 26.4 bits (57), Expect = 0.33
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
PP++ LF+ L ++ NE +
Sbjct: 6 PPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIA 48
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 85
Score = 27.4 bits (60), Expect = 0.14
Identities = 3/41 (7%), Positives = 14/41 (34%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPDGTS 102
++ +++ DD+++ G + + +
Sbjct: 6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAF 46
Score = 23.2 bits (49), Expect = 5.2
Identities = 2/35 (5%), Positives = 7/35 (20%)
Query: 16 DKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPW 50
++ +++ DD
Sbjct: 6 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRR 40
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 27.0 bits (59), Expect = 0.21
Identities = 5/35 (14%), Positives = 11/35 (31%)
Query: 58 PLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
D ++ V L + D++ G +
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYA 45
Score = 26.3 bits (57), Expect = 0.51
Identities = 5/39 (12%), Positives = 8/39 (20%)
Query: 12 PLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPW 50
D ++ V L + D H
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQK 49
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 27.0 bits (59), Expect = 0.24
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVLKGPD 99
K+FVG L + +RK F FG IEE V+
Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQ 47
Score = 26.2 bits (57), Expect = 0.50
Identities = 5/37 (13%), Positives = 8/37 (21%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPW 50
K+FVG L + +
Sbjct: 8 TTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVIT 44
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 27.2 bits (59), Expect = 0.24
Identities = 4/49 (8%), Positives = 7/49 (14%)
Query: 8 WTCTPLPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
+ L V + +E D
Sbjct: 34 QMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQ 82
Score = 27.2 bits (59), Expect = 0.30
Identities = 8/39 (20%), Positives = 15/39 (38%)
Query: 54 WTCTPLPPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+ L V + +E +R++F +G IE
Sbjct: 34 QMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESV 72
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 26.6 bits (58), Expect = 0.34
Identities = 7/45 (15%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEECTVL-KGPDGTSK 103
P + V + + D++ F + I L G
Sbjct: 7 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPT 51
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 26.2 bits (57), Expect = 0.42
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIF 83
+ KLFVG LS NE + ++F
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVF 26
Score = 26.2 bits (57), Expect = 0.42
Identities = 10/41 (24%), Positives = 11/41 (26%)
Query: 16 DKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
+ KLFVG LS NE D
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQR 45
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 25.9 bits (56), Expect = 0.55
Identities = 4/34 (11%), Positives = 13/34 (38%)
Query: 17 KKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPW 50
+++ + LS + +++ L F +
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIP 38
Score = 23.9 bits (51), Expect = 2.9
Identities = 11/42 (26%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 63 KKLFVGMLSKQ-QNEDDVRKIFAPFGTIEECTVLKGPDGTSK 103
+++ + LS + +E+ +R+ F FG+IE+ + G S
Sbjct: 5 REIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSF 46
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 25.9 bits (56), Expect = 0.63
Identities = 4/30 (13%), Positives = 9/30 (30%)
Query: 63 KKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
+ V L + N +V + +
Sbjct: 6 SGILVKNLPQDSNCQEVHDLLKDYDLKYCY 35
>d2i9xa1 d.366.1.1 (A:1-84) Putative septation protein SpoVG
{Staphylococcus epidermidis [TaxId: 1282]}
Length = 84
Score = 25.0 bits (55), Expect = 1.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAP 85
+ LFV M SK+ + + R I P
Sbjct: 40 NSGLFVAMPSKRTPDGEFRDIAHP 63
>d2ia9a1 d.366.1.1 (A:1-92) Putative septation protein SpoVG
{Bacillus subtilis [TaxId: 1423]}
Length = 92
Score = 24.7 bits (54), Expect = 1.4
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 62 DKKLFVGMLSKQQNEDDVRKIFAP 85
+ LFV M SK+ + + R I P
Sbjct: 40 NNGLFVAMPSKRTPDGEFRDITHP 63
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 422
Score = 25.3 bits (55), Expect = 1.8
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 13 LPPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWT 55
PD KL VG + + D C ++ + F + +
Sbjct: 65 RAPDNKLAVGQVFLPRISLDAQEACRCIVETEILAFGYYIYGW 107
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 24.7 bits (53), Expect = 1.8
Identities = 5/40 (12%), Positives = 12/40 (30%)
Query: 17 KKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
+ +FVG + + E+ + +D
Sbjct: 9 RSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGK 48
Score = 24.3 bits (52), Expect = 2.5
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 63 KKLFVGMLSKQQNEDDVRKIF 83
+ +FVG + + E+ ++ IF
Sbjct: 9 RSVFVGNIPYEATEEQLKDIF 29
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 24.4 bits (52), Expect = 1.9
Identities = 4/44 (9%), Positives = 10/44 (22%)
Query: 14 PPDKKLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTCT 57
P + L + L + E + ++
Sbjct: 6 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFL 49
Score = 23.3 bits (49), Expect = 4.5
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 60 PPDKKLFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
P + L + L + E +V + PFG +
Sbjct: 6 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNI 38
>d1twfa_ e.29.1.2 (A:) RBP1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 1449
Score = 25.2 bits (54), Expect = 2.1
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 36 HCFHLLFPHLQCFPWDLIWTCTPLPPDK-KLFVGMLSKQQNEDD 78
L F + P +I TC P+PP + + Q+ EDD
Sbjct: 217 DFTSLGFNEVFSRPEWMILTCLPVPPPPVRPSISFNESQRGEDD 260
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 24.0 bits (51), Expect = 3.2
Identities = 3/20 (15%), Positives = 9/20 (45%)
Query: 64 KLFVGMLSKQQNEDDVRKIF 83
L++ L +E ++ +
Sbjct: 20 NLYISNLPLSMDEQELENML 39
Score = 23.2 bits (49), Expect = 5.6
Identities = 5/39 (12%), Positives = 10/39 (25%)
Query: 18 KLFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
L++ L +E + + D T
Sbjct: 20 NLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTS 58
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 23.2 bits (49), Expect = 3.9
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 65 LFVGMLSKQQNEDDVRKIFAPFGTIEEC 92
L++ L + D+ K+ P+G I
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVST 28
Score = 22.4 bits (47), Expect = 9.7
Identities = 5/38 (13%), Positives = 9/38 (23%), Gaps = 1/38 (2%)
Query: 19 LFVGMLSKQQNEDDNLSHCFHLLFPHLQCFPWDLIWTC 56
L++ L + D L + T
Sbjct: 1 LYIRGLQPGTTDQD-LVKLCQPYGKIVSTKAILDKTTN 37
>d1wvha1 b.55.1.2 (A:1606-1738) Tensin {Chicken (Gallus gallus)
[TaxId: 9031]}
Length = 133
Score = 23.8 bits (51), Expect = 4.6
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 1 MLPLDLIWTCTPLPPDKKLFVGMLSKQQNEDDNLSHCF 38
+ P + WT T KLF + KQ + DN+ H F
Sbjct: 75 LDPQERKWTKTDGSGPAKLFGFVARKQGSTTDNVCHLF 112
>d1jhga_ a.4.12.1 (A:) Trp repressor, TrpR {Escherichia coli
[TaxId: 562]}
Length = 101
Score = 23.2 bits (50), Expect = 4.9
Identities = 6/31 (19%), Positives = 10/31 (32%)
Query: 61 PDKKLFVGMLSKQQNEDDVRKIFAPFGTIEE 91
+ FV +L D + T +E
Sbjct: 10 QEWLRFVDLLKNAYQNDLHLPLLNLMLTPDE 40
>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 153
Score = 23.0 bits (49), Expect = 8.2
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 3/29 (10%)
Query: 57 TPLPPDKKLFVGM---LSKQQNEDDVRKI 82
PLP +K LF+G L+ D +
Sbjct: 7 GPLPLNKTLFLGYAFLLTMATTSDKLASR 35
>d2d7na1 b.1.18.10 (A:8-87) Filamin C {Human (Homo sapiens) [TaxId:
9606]}
Length = 80
Score = 22.5 bits (48), Expect = 8.7
Identities = 5/21 (23%), Positives = 8/21 (38%)
Query: 81 KIFAPFGTIEECTVLKGPDGT 101
++ P G + DGT
Sbjct: 20 EVRMPSGKTARPNITDNKDGT 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.143 0.487
Gapped
Lambda K H
0.267 0.0546 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 422,963
Number of extensions: 17473
Number of successful extensions: 175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 175
Number of HSP's successfully gapped: 140
Length of query: 103
Length of database: 2,407,596
Length adjustment: 64
Effective length of query: 39
Effective length of database: 1,528,876
Effective search space: 59626164
Effective search space used: 59626164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.3 bits)