BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10285
(673 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Y56|B Chain B, Crystal Structure Of L-Proline Dehydrogenase From
P.Horikoshii
Length = 382
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 97/381 (25%), Positives = 147/381 (38%), Gaps = 51/381 (13%)
Query: 270 GCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCH 329
G V V+++ F ST G+RQQF+ N+ + E +
Sbjct: 28 GEEVTVIEKRFI--------GSGSTFRCGTGIRQQFNDEANVRVMKRSVELWKKY----- 74
Query: 330 VIGEDEPDVNFTPNGYLFCASQDG-AATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNT 388
+E +F GYLF D T ++N ++Q + G L+ PE+ K P L+
Sbjct: 75 ---SEEYGFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDI 131
Query: 389 DDIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDG 448
++ A +G DP+ A KA GA+ + V NN++
Sbjct: 132 SEVIAASWN-PTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIK------- 183
Query: 449 EYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEP 508
V+ KG +KT I V A A++ + M I K +P+EP
Sbjct: 184 --------GVKTNKGIIKT---GIVVNATNAWANLINAMAGIKTK----------IPIEP 222
Query: 509 RKRYVYCFESPRGPGVNTPMVIDTTGTYFRREGLGNYYICGKSPTPEQEPPVDNLDVDYE 568
K P G PMVI + Y ++ + P +L YE
Sbjct: 223 YKHQA-VITQPIKRGTINPMVI--SFKYGHAYLTQTFHGGIIGGIGYEIGPTYDLTPTYE 279
Query: 569 YFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHG 628
+ E + + + A + L + WAGYY D N IG ++ + A GFSGHG
Sbjct: 280 FLREVSY-YFTKIIPALKNLLILRTWAGYYA-KTPDSNPAIGRIEELNDYYIAAGFSGHG 337
Query: 629 IQQAPAIGRAVSELILDAEFK 649
APA+G V+ELI + K
Sbjct: 338 FMMAPAVGEMVAELITKGKTK 358
>pdb|3VQR|A Chain A, Structure Of A Dye-Linked L-Proline Dehydrogenase Mutant
From The Aerobic Hyperthermophilic Archaeon, Aeropyrum
Pernix
pdb|3VQR|B Chain B, Structure Of A Dye-Linked L-Proline Dehydrogenase Mutant
From The Aerobic Hyperthermophilic Archaeon, Aeropyrum
Pernix
Length = 447
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 136/354 (38%), Gaps = 77/354 (21%)
Query: 337 DVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPW----------- 385
D+ +GYLF ++ +E+ + E G +++ PE+L+ +
Sbjct: 100 DLGLVKSGYLFVYDRERWREVEEPLREAGEEGRDYLIIPPEELERRLGMNTRVSDGEEAE 159
Query: 386 -LNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVRGE-VVDFLRRRNNQVHYE 443
L D+ A L + G+ D ++ ++A G E++ G VV + ++ E
Sbjct: 160 VLGVGDVEGAVL-IRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIE 218
Query: 444 GYDDGEYHSVNECVV-----RDEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQG 498
G + V R E GE V+AAG +S ++ L I ++
Sbjct: 219 GEPLPWQEARASAAVLSDGTRVEVGEK-------LVVAAGVWSNRLLNPLGIDTFSR--- 268
Query: 499 FLFVPLPVEPRKRYVYCFESPR-------------GPGVNTPMVIDTTGTYFR---REG- 541
P+KR V+ + G G P++I R REG
Sbjct: 269 ---------PKKRMVFRVSASTEGLRRIMREGDLAGAGA-PPLIILPKRVLVRPAPREGS 318
Query: 542 --------LGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNA 593
LG + + P PE+ Y++ + P L+ + F++ S
Sbjct: 319 FWVQLSDNLGRPFALEEDPQPEEH-----------YYSLAILPILSLYLPQFQDAYPSGG 367
Query: 594 WAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAE 647
WAG+YD + FD N ++ P I A G SG GI ++ +IGR + + L E
Sbjct: 368 WAGHYDIS-FDANPVV-FEPWESGIVVAAGTSGSGIMKSDSIGRVAAAVALGME 419
>pdb|3AXB|A Chain A, Structure Of A Dye-Linked L-Proline Dehydrogenase From The
Aerobic Hyperthermophilic Archaeon, Aeropyrum Pernix
Length = 448
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 80/354 (22%), Positives = 136/354 (38%), Gaps = 77/354 (21%)
Query: 337 DVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPW----------- 385
D+ +GYLF ++ +E+ + E G +++ PE+L+ +
Sbjct: 100 DLGLVKSGYLFVYDRERWREVEEPLREAGEEGRDYLIIPPEELERRLGXNTRVSDGEEAE 159
Query: 386 -LNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVRGE-VVDFLRRRNNQVHYE 443
L D+ A L + G+ D ++ ++A G E++ G VV + ++ E
Sbjct: 160 VLGVGDVEGAVL-IRSAGFLDAEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIE 218
Query: 444 GYDDGEYHSVNECVV-----RDEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQG 498
G + V R E GE V+AAG +S ++ L I ++
Sbjct: 219 GEPLPWQEARASAAVLSDGTRVEVGEK-------LVVAAGVWSNRLLNPLGIDTFSR--- 268
Query: 499 FLFVPLPVEPRKRYVYCFESPR-------------GPGVNTPMVIDTTGTYFR---REG- 541
P+KR V+ + G G P++I R REG
Sbjct: 269 ---------PKKRXVFRVSASTEGLRRIXREGDLAGAGA-PPLIILPKRVLVRPAPREGS 318
Query: 542 --------LGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNA 593
LG + + P PE+ Y++ + P L+ + F++ S
Sbjct: 319 FWVQLSDNLGRPFALEEDPQPEEH-----------YYSLAILPILSLYLPQFQDAYPSGG 367
Query: 594 WAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAE 647
WAG+YD + FD N ++ P I A G SG GI ++ +IGR + + L E
Sbjct: 368 WAGHYDIS-FDANPVV-FEPWESGIVVAAGTSGSGIXKSDSIGRVAAAVALGXE 419
>pdb|3NYE|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Arginine
pdb|3NYF|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With Imino-Histidine
pdb|3NYC|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase
pdb|3SM8|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa D-Arginine
Dehydrogenase In Complex With An (N5) Flavin Adduct
Length = 381
Score = 49.7 bits (117), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 68/296 (22%), Positives = 117/296 (39%), Gaps = 54/296 (18%)
Query: 357 LEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKK 416
L + ++ K L + LL EQ + P L D + A +DP
Sbjct: 105 LRRQYESGKALVPQMRLLDAEQACSIVPVLRRDKVFGAT--------YDP----TGADID 152
Query: 417 AISLGAEYVRGEVVDFLRRRNNQV--HYEGYD----DGEYHSVNECVVRDEKGELKTITF 470
+L Y+RG +RR QV ++E + DG + VR + G +
Sbjct: 153 TDALHQGYLRG-----IRRNQGQVLCNHEALEIRRVDGAWE------VRCDAGSYRA--- 198
Query: 471 AICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNT---P 527
A+ V AAGA+ +A + + PL ++P++R + F P PG++ P
Sbjct: 199 AVLVNAAGAWCDAIAGLAGV-----------RPLGLQPKRRSAFIFAPP--PGIDCHDWP 245
Query: 528 MVIDTTGTYFRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEE 587
M++ +++ + G + G +P PV+ DV E + +L
Sbjct: 246 MLVSLDESFYLKPDAG--MLLG---SPANADPVEAHDVQPEQLDIATGMYLIEEATTLTI 300
Query: 588 LKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELI 643
+ + WAG F D + + G + + G+GIQ + A+G A + LI
Sbjct: 301 RRPEHTWAGLRSF-VADGDLVAGYAANAEGFFWVAAQGGYGIQTSAAMGEASAALI 355
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 67/158 (42%), Gaps = 22/158 (13%)
Query: 504 LPVEPRKRYVYCFESPRG--------PGVNTPMVIDTTGTYFRREGLGNYYICGKSPTPE 555
+P++P ++ V FES PG MV G Y+ G + T
Sbjct: 216 IPLQPYRQVVGFFESDESKYSNDIDFPGF---MVEVPNGIYYGFPSFGGCGLMLGYHTFG 272
Query: 556 QEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNA------WAGYYDFNYFDENAII 609
Q+ D ++ ++ V+P ++AF E + A A DE+ II
Sbjct: 273 QKIDPDTINREF-----GVYPEDESNLRAFLEEYMPGANGELKRGAVCMYTKTLDEHFII 327
Query: 610 GLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAE 647
LHP + N+ A GFSGHG + + +G +S+L L +
Sbjct: 328 DLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGK 365
>pdb|1EL9|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1EL9|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylthio]acetate
pdb|1ELI|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
pdb|1ELI|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Pyrrole-2- Carboxylate
Length = 389
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 603 FDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAE 647
DE+ II LHP + N+ A GFSGHG + + +G +S+L L +
Sbjct: 321 LDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGK 365
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
Length = 389
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 603 FDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAE 647
DE+ II LHP + N+ A GFSGHG + + +G +S+L L +
Sbjct: 321 LDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGK 365
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg Phosphate-Crytsallized
Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized Mutant
Of Monomeric Sarcosine Oxidase
Length = 389
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 603 FDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAE 647
DE+ II LHP + N+ A GFSGHG + + +G +S+L L +
Sbjct: 321 LDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGK 365
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 603 FDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDLSRF 656
DE+ II LHP + N+ A GFSGHG + + +G +S+L L + + D+S F
Sbjct: 322 LDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGKTEH-DISIF 374
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The Inhibitor
[methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric Sarcosine
Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 28/45 (62%)
Query: 603 FDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAE 647
DE+ II LHP + N+ A GFSGHG + + +G +S+L L +
Sbjct: 321 LDEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGK 365
>pdb|1ZOV|A Chain A, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
pdb|1ZOV|B Chain B, Crystal Structure Of Monomeric Sarcosine Oxidase From
Bacillus Sp. Ns- 129
Length = 386
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 604 DENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDLSRFLL 658
DE+ +I LHP Y N+ A GFSGHG + + +G +++L + + D+S F L
Sbjct: 322 DEHFVIDLHPKYSNVAIAAGFSGHGFKFSSVVGETLAQLATTGKTEH-DISIFSL 375
>pdb|3IF9|A Chain A, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|B Chain B, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|C Chain C, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
pdb|3IF9|D Chain D, Crystal Structure Of Glycine Oxidase G51sA54RH244A MUTANT
IN COMPLEX With Inhibitor Glycolate
Length = 382
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 572 ENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQ 631
E+V + A + +KV WAG D IG HP I FA G +GI
Sbjct: 289 ESVMKKAKTMLPAIQNMKVDRFWAGLRPGTK-DGKPYIGRHPEDSRILFAAGHFRNGILL 347
Query: 632 APAIGRAVSELILDAE 647
APA G +S+LI++ E
Sbjct: 348 APATGALISDLIMNKE 363
>pdb|1RYI|A Chain A, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|B Chain B, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|C Chain C, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
pdb|1RYI|D Chain D, Structure Of Glycine Oxidase With Bound Inhibitor
Glycolate
Length = 382
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 572 ENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQ 631
E+V + A + +KV WAG D IG HP I FA G +GI
Sbjct: 289 ESVMKKAKTMLPAIQNMKVDRFWAGLRPGTK-DGKPYIGRHPEDSRILFAAGHFRNGILL 347
Query: 632 APAIGRAVSELILDAE 647
APA G +S+LI++ E
Sbjct: 348 APATGALISDLIMNKE 363
>pdb|1NG3|A Chain A, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG3|B Chain B, Complex Of Thio (Glycine Oxidase) With Acetyl-Glycine
pdb|1NG4|A Chain A, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
pdb|1NG4|B Chain B, Structure Of Thio (Glycine Oxidase) From Bacillus Subtilis
Length = 390
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 68/188 (36%), Gaps = 48/188 (25%)
Query: 473 CVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVE---------PRKRYVY---CFESPR 520
V+A+G +SG + L + + F+P+ E P + +Y C+ PR
Sbjct: 219 VVVASGVWSGMFFKQLGLNNA-------FLPVKGECLSVWNDDIPLTKTLYHDHCYIVPR 271
Query: 521 GPGVNTPMVIDTTGTYFRREGLGNY-YICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLA 579
G G + LG + K+ T PP+ N+ VD W L
Sbjct: 272 KSGRLVVGATMKPGDWSETPDLGGLESVMKKAKT--MLPPIQNMKVD------RFWAGLR 323
Query: 580 HRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAV 639
K D IG HP I FA G +GI APA G +
Sbjct: 324 PGTK--------------------DGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALI 363
Query: 640 SELILDAE 647
S+LI++ E
Sbjct: 364 SDLIMNKE 371
>pdb|3DJD|A Chain A, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii)
pdb|3DJD|B Chain B, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii)
pdb|3DJE|A Chain A, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii) In
Complex With Fsa
pdb|3DJE|B Chain B, Crystal Structure Of The Deglycating Enzyme Fructosamine
Oxidase From Aspergillus Fumigatus (Amadoriase Ii) In
Complex With Fsa
Length = 438
Score = 34.7 bits (78), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 61/267 (22%), Positives = 99/267 (37%), Gaps = 64/267 (23%)
Query: 402 GWFDPWLYLNAVKKKAISLGAEYV----RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECV 457
GW L A ++A G ++V +G VV + NN V DG+ +
Sbjct: 156 GWAHARNALVAAAREAQRXGVKFVTGTPQGRVVTLIFE-NNDVKGAVTADGK-------I 207
Query: 458 VRDEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFE 517
R E+ TF + AGA +GQ L ++ + + V + ++P +R +Y
Sbjct: 208 WRAER------TF----LCAGASAGQ---FLDFKNQLRPTAWTLVHIALKPEERALY--- 251
Query: 518 SPRGPGVNTPMVIDTTGTYFRR--EGLGNYYICGKSPT----------PEQEPPVDNLDV 565
N P++ + +F E G IC + P P + +
Sbjct: 252 ------KNIPVIFNIERGFFFEPDEERGEIKICDEHPGYTNXVQSADGTXXSIPFEKTQI 305
Query: 566 DYEY------FNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIH 619
E + P LA R +F + W + + +I HP YH++
Sbjct: 306 PKEAETRVRALLKETXPQLADRPFSFARI----CWCA----DTANREFLIDRHPQYHSLV 357
Query: 620 FATGFSGHGIQQAPAIGRAVSELILDA 646
G SG G + P+IG LI+DA
Sbjct: 358 LGCGASGRGFKYLPSIG----NLIVDA 380
>pdb|2UZZ|A Chain A, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|B Chain B, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|C Chain C, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
pdb|2UZZ|D Chain D, X-Ray Structure Of N-Methyl-L-Tryptophan Oxidase (Mtox)
Length = 372
Score = 32.7 bits (73), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Query: 595 AGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDLS 654
A YD N DE+ II P + N TG SGHG + A +G ++ D + DL+
Sbjct: 307 ACTYD-NSPDEDFIIDTLPGHDNTLLITGLSGHGFKFASVLGEIAADFAQDKK-SDFDLT 364
Query: 655 RFLL 658
F L
Sbjct: 365 PFRL 368
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.136 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,372,399
Number of Sequences: 62578
Number of extensions: 948390
Number of successful extensions: 1963
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1943
Number of HSP's gapped (non-prelim): 21
length of query: 673
length of database: 14,973,337
effective HSP length: 105
effective length of query: 568
effective length of database: 8,402,647
effective search space: 4772703496
effective search space used: 4772703496
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)