Query psy10285
Match_columns 673
No_of_seqs 489 out of 5131
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 22:31:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10285.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10285hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2853|consensus 100.0 6.6E-56 1.4E-60 436.9 33.9 423 241-673 83-509 (509)
2 TIGR01373 soxB sarcosine oxida 100.0 1E-40 2.3E-45 365.1 41.5 371 242-669 28-407 (407)
3 PRK00711 D-amino acid dehydrog 100.0 5.5E-39 1.2E-43 352.6 36.8 357 246-661 2-416 (416)
4 TIGR01377 soxA_mon sarcosine o 100.0 3E-38 6.4E-43 342.6 40.9 367 245-665 1-378 (380)
5 PRK11259 solA N-methyltryptoph 100.0 2.2E-37 4.8E-42 335.3 39.7 363 244-662 3-375 (376)
6 TIGR03329 Phn_aa_oxid putative 100.0 4.3E-36 9.3E-41 332.9 37.1 368 224-647 2-395 (460)
7 KOG2844|consensus 100.0 6.3E-35 1.4E-39 310.6 31.7 376 243-671 38-429 (856)
8 PRK12409 D-amino acid dehydrog 100.0 3.4E-34 7.4E-39 313.9 36.4 348 245-647 2-407 (410)
9 PRK01747 mnmC bifunctional tRN 100.0 5E-35 1.1E-39 337.8 30.1 361 244-670 260-659 (662)
10 COG0665 DadA Glycine/D-amino a 100.0 5.6E-34 1.2E-38 309.8 35.5 369 243-665 3-385 (387)
11 PF01266 DAO: FAD dependent ox 100.0 9.4E-35 2E-39 311.4 29.0 341 246-642 1-358 (358)
12 TIGR02352 thiamin_ThiO glycine 100.0 4.7E-33 1E-37 296.7 33.0 329 261-647 1-337 (337)
13 TIGR03364 HpnW_proposed FAD de 100.0 5.5E-32 1.2E-36 291.9 33.8 328 245-637 1-364 (365)
14 KOG2820|consensus 100.0 6E-32 1.3E-36 268.6 30.0 368 243-663 6-396 (399)
15 TIGR03197 MnmC_Cterm tRNA U-34 100.0 3E-32 6.5E-37 295.5 26.8 336 259-662 1-380 (381)
16 PRK11728 hydroxyglutarate oxid 100.0 2.1E-29 4.5E-34 274.3 34.4 345 244-643 2-393 (393)
17 PRK11101 glpA sn-glycerol-3-ph 100.0 1.7E-28 3.7E-33 276.5 37.9 343 243-646 5-370 (546)
18 KOG2852|consensus 100.0 3.5E-28 7.6E-33 236.3 22.5 355 243-663 9-380 (380)
19 TIGR03377 glycerol3P_GlpA glyc 99.9 1.8E-23 3.9E-28 235.2 34.5 328 260-646 1-347 (516)
20 COG0579 Predicted dehydrogenas 99.9 8.5E-23 1.8E-27 217.5 33.1 355 243-645 2-374 (429)
21 PLN02464 glycerol-3-phosphate 99.9 3E-22 6.5E-27 228.4 35.2 348 243-645 70-453 (627)
22 PRK13369 glycerol-3-phosphate 99.9 4.2E-21 9E-26 215.1 32.4 345 243-646 5-377 (502)
23 PRK12266 glpD glycerol-3-phosp 99.9 1E-20 2.2E-25 211.8 34.7 346 243-646 5-378 (508)
24 COG0578 GlpA Glycerol-3-phosph 99.9 2E-19 4.3E-24 195.3 31.7 347 242-645 10-385 (532)
25 PRK13339 malate:quinone oxidor 99.9 2.3E-19 4.9E-24 197.5 32.5 373 243-647 5-453 (497)
26 PTZ00383 malate:quinone oxidor 99.9 1.9E-19 4.2E-24 198.8 31.2 237 243-516 44-298 (497)
27 TIGR01320 mal_quin_oxido malat 99.9 1E-18 2.2E-23 193.6 34.9 360 245-645 1-444 (483)
28 KOG3923|consensus 99.8 1.3E-19 2.8E-24 178.1 21.9 319 244-645 3-335 (342)
29 PRK05257 malate:quinone oxidor 99.8 2.7E-18 5.9E-23 190.4 34.2 365 243-647 4-451 (494)
30 KOG2665|consensus 99.7 2.6E-16 5.7E-21 155.5 18.3 361 241-644 45-452 (453)
31 KOG0042|consensus 99.7 3.6E-16 7.9E-21 164.7 18.4 351 243-645 66-447 (680)
32 COG1249 Lpd Pyruvate/2-oxoglut 99.5 4.9E-13 1.1E-17 145.5 16.7 169 99-281 3-207 (454)
33 PF06039 Mqo: Malate:quinone o 99.4 7.6E-11 1.6E-15 124.9 24.2 229 243-491 2-254 (488)
34 COG3634 AhpF Alkyl hydroperoxi 99.4 2.5E-13 5.5E-18 136.2 4.8 194 65-281 175-388 (520)
35 PRK06116 glutathione reductase 99.4 1.1E-11 2.4E-16 137.5 18.0 41 99-142 3-43 (450)
36 TIGR01424 gluta_reduc_2 glutat 99.4 1.7E-11 3.7E-16 135.8 18.8 40 100-142 2-41 (446)
37 PRK06370 mercuric reductase; V 99.3 1.7E-11 3.7E-16 136.5 15.5 43 98-143 3-45 (463)
38 PRK05249 soluble pyridine nucl 99.3 2.3E-11 4.9E-16 135.6 15.5 35 99-136 4-38 (461)
39 TIGR01421 gluta_reduc_1 glutat 99.3 5.4E-11 1.2E-15 131.7 18.3 40 100-142 2-41 (450)
40 TIGR01350 lipoamide_DH dihydro 99.3 7.5E-11 1.6E-15 131.4 19.1 39 101-142 2-40 (461)
41 PRK05976 dihydrolipoamide dehy 99.3 1.1E-10 2.3E-15 130.5 20.3 41 99-142 3-43 (472)
42 PRK14694 putative mercuric red 99.3 1.3E-10 2.8E-15 129.6 20.9 42 99-143 5-46 (468)
43 PRK06115 dihydrolipoamide dehy 99.3 3.8E-11 8.3E-16 133.6 15.5 36 243-281 173-208 (466)
44 PRK07818 dihydrolipoamide dehy 99.3 1.3E-10 2.8E-15 129.6 19.5 42 100-144 4-45 (466)
45 PRK07251 pyridine nucleotide-d 99.3 8.6E-11 1.9E-15 130.0 17.8 34 100-136 3-36 (438)
46 PLN02507 glutathione reductase 99.3 7.9E-11 1.7E-15 131.9 17.3 33 99-134 24-56 (499)
47 PTZ00058 glutathione reductase 99.3 6.5E-11 1.4E-15 133.4 16.6 42 99-143 47-88 (561)
48 TIGR02053 MerA mercuric reduct 99.3 7.4E-11 1.6E-15 131.5 17.0 40 101-143 1-40 (463)
49 PRK06416 dihydrolipoamide dehy 99.3 5.2E-11 1.1E-15 132.7 15.7 41 100-143 4-44 (462)
50 PRK08010 pyridine nucleotide-d 99.3 1.4E-10 3.1E-15 128.4 18.8 34 100-136 3-36 (441)
51 PRK13748 putative mercuric red 99.2 3.6E-10 7.8E-15 129.1 20.7 40 100-142 98-137 (561)
52 PRK14727 putative mercuric red 99.2 6.2E-10 1.3E-14 124.4 21.6 41 99-142 15-56 (479)
53 TIGR03378 glycerol3P_GlpB glyc 99.2 1.5E-09 3.2E-14 116.5 22.9 71 403-489 259-331 (419)
54 PRK06467 dihydrolipoamide dehy 99.2 1.8E-10 3.9E-15 128.3 15.8 40 100-142 4-44 (471)
55 TIGR02032 GG-red-SF geranylger 99.2 3.4E-09 7.5E-14 110.4 24.4 194 402-642 86-294 (295)
56 TIGR01438 TGR thioredoxin and 99.2 5.7E-10 1.2E-14 124.5 19.1 33 100-135 2-34 (484)
57 COG0492 TrxB Thioredoxin reduc 99.2 4.7E-11 1E-15 124.0 9.3 161 99-281 2-177 (305)
58 PRK06327 dihydrolipoamide dehy 99.2 2.7E-10 5.8E-15 127.2 15.1 33 99-134 3-35 (475)
59 PRK06185 hypothetical protein; 99.2 2.1E-09 4.6E-14 117.8 21.3 72 404-491 105-178 (407)
60 PLN02697 lycopene epsilon cycl 99.2 8E-09 1.7E-13 115.4 25.7 201 403-647 188-414 (529)
61 PLN02546 glutathione reductase 99.2 1.2E-09 2.6E-14 123.2 18.8 32 100-134 79-110 (558)
62 PRK10157 putative oxidoreducta 99.2 2.2E-09 4.7E-14 118.2 20.5 69 403-491 104-173 (428)
63 PTZ00052 thioredoxin reductase 99.1 1.8E-09 3.9E-14 121.1 19.4 32 100-134 5-36 (499)
64 PRK06292 dihydrolipoamide dehy 99.1 6.7E-10 1.5E-14 123.7 15.5 40 100-142 3-42 (460)
65 TIGR01423 trypano_reduc trypan 99.1 1.6E-09 3.4E-14 120.8 18.2 35 99-135 2-36 (486)
66 PRK06912 acoL dihydrolipoamide 99.1 1.3E-09 2.7E-14 121.3 17.4 40 102-144 2-41 (458)
67 PF00890 FAD_binding_2: FAD bi 99.1 3.5E-10 7.6E-15 124.4 12.8 200 246-485 1-207 (417)
68 PF05834 Lycopene_cycl: Lycope 99.1 2.1E-08 4.5E-13 108.5 24.9 190 403-645 83-290 (374)
69 PRK06481 fumarate reductase fl 99.1 1.1E-09 2.5E-14 122.9 15.6 188 243-483 60-253 (506)
70 COG2081 Predicted flavoprotein 99.1 3.5E-09 7.6E-14 110.3 17.3 173 243-491 2-187 (408)
71 PRK07121 hypothetical protein; 99.1 2.8E-09 6E-14 119.7 17.7 64 405-482 175-240 (492)
72 PLN02463 lycopene beta cyclase 99.1 1.9E-08 4E-13 110.7 23.6 61 403-482 110-170 (447)
73 TIGR01790 carotene-cycl lycope 99.1 4.7E-08 1E-12 106.5 26.5 195 403-644 81-297 (388)
74 PRK08274 tricarballylate dehyd 99.1 2E-09 4.3E-14 120.2 15.9 189 243-482 3-193 (466)
75 PRK07846 mycothione reductase; 99.1 1.5E-09 3.3E-14 120.2 14.5 35 244-281 166-200 (451)
76 TIGR01813 flavo_cyto_c flavocy 99.1 1.7E-09 3.6E-14 119.8 14.5 186 246-482 1-193 (439)
77 PRK05329 anaerobic glycerol-3- 99.1 1.8E-08 4E-13 109.5 22.1 60 407-482 259-319 (422)
78 KOG1335|consensus 99.0 9E-10 2E-14 112.5 10.7 36 99-137 38-73 (506)
79 PRK09754 phenylpropionate diox 99.0 2.2E-09 4.8E-14 117.1 14.8 36 243-281 143-178 (396)
80 PRK07608 ubiquinone biosynthes 99.0 3.5E-08 7.6E-13 107.4 23.0 69 403-491 107-176 (388)
81 PRK08773 2-octaprenyl-3-methyl 99.0 2.7E-08 5.9E-13 108.5 21.9 69 403-491 109-178 (392)
82 PTZ00139 Succinate dehydrogena 99.0 7.3E-09 1.6E-13 118.8 17.6 194 243-483 28-231 (617)
83 PRK08958 sdhA succinate dehydr 99.0 6.6E-09 1.4E-13 118.6 16.9 191 242-483 5-208 (588)
84 PRK09078 sdhA succinate dehydr 99.0 1E-08 2.2E-13 117.3 17.8 191 243-484 11-215 (598)
85 TIGR03143 AhpF_homolog putativ 99.0 9.9E-10 2.2E-14 124.8 9.4 36 243-281 142-177 (555)
86 PRK04965 NADH:flavorubredoxin 99.0 5.5E-08 1.2E-12 105.5 22.6 36 243-281 140-175 (377)
87 COG0644 FixC Dehydrogenases (f 99.0 9.6E-08 2.1E-12 104.3 23.8 72 401-491 89-161 (396)
88 PLN00128 Succinate dehydrogena 99.0 1.1E-08 2.4E-13 117.3 16.9 195 243-484 49-253 (635)
89 TIGR03452 mycothione_red mycot 99.0 7.6E-09 1.6E-13 114.8 15.1 35 244-281 169-203 (452)
90 PRK07057 sdhA succinate dehydr 99.0 1.7E-08 3.7E-13 115.4 18.0 193 242-483 10-213 (591)
91 PRK07845 flavoprotein disulfid 99.0 1.4E-08 3.1E-13 113.1 17.1 40 102-144 3-42 (466)
92 PF03486 HI0933_like: HI0933-l 98.9 3.4E-09 7.4E-14 114.8 11.0 69 405-491 107-186 (409)
93 PRK07804 L-aspartate oxidase; 98.9 1.9E-08 4.1E-13 114.0 17.2 187 243-482 15-211 (541)
94 PRK07573 sdhA succinate dehydr 98.9 1.2E-08 2.7E-13 117.3 15.6 193 243-483 34-234 (640)
95 PRK07333 2-octaprenyl-6-methox 98.9 8.5E-08 1.8E-12 104.9 21.6 70 402-491 106-176 (403)
96 COG3075 GlpB Anaerobic glycero 98.9 3.1E-08 6.7E-13 99.7 16.1 61 406-482 257-318 (421)
97 PRK06452 sdhA succinate dehydr 98.9 2.1E-08 4.6E-13 114.1 17.1 184 243-481 4-198 (566)
98 PRK07233 hypothetical protein; 98.9 4.4E-07 9.5E-12 100.2 26.7 54 407-479 198-252 (434)
99 PRK08205 sdhA succinate dehydr 98.9 2.1E-08 4.6E-13 114.5 16.5 194 243-483 4-208 (583)
100 TIGR01812 sdhA_frdA_Gneg succi 98.9 2.9E-08 6.3E-13 113.4 17.6 183 246-482 1-192 (566)
101 KOG2853|consensus 98.9 5.7E-09 1.2E-13 105.1 10.1 140 60-212 35-194 (509)
102 TIGR01988 Ubi-OHases Ubiquinon 98.9 9.6E-08 2.1E-12 103.7 19.7 67 404-490 103-171 (385)
103 PRK08071 L-aspartate oxidase; 98.9 3E-08 6.4E-13 111.5 16.1 183 244-482 3-191 (510)
104 PRK05945 sdhA succinate dehydr 98.9 2.9E-08 6.4E-13 113.3 16.0 186 244-483 3-199 (575)
105 PTZ00153 lipoamide dehydrogena 98.9 1.9E-09 4.2E-14 123.2 6.3 33 100-135 116-148 (659)
106 TIGR00551 nadB L-aspartate oxi 98.9 4E-08 8.6E-13 110.2 16.8 183 244-483 2-191 (488)
107 PRK06134 putative FAD-binding 98.9 5.3E-08 1.1E-12 111.3 18.0 70 401-485 211-282 (581)
108 PRK06175 L-aspartate oxidase; 98.9 4E-08 8.7E-13 108.2 15.8 186 243-482 3-190 (433)
109 PRK06847 hypothetical protein; 98.9 2.1E-07 4.5E-12 100.8 21.3 64 402-484 102-166 (375)
110 PRK08626 fumarate reductase fl 98.9 4.4E-08 9.4E-13 113.0 16.7 63 407-483 158-222 (657)
111 PRK09564 coenzyme A disulfide 98.9 5.9E-08 1.3E-12 107.7 17.3 35 244-281 149-183 (444)
112 COG2072 TrkA Predicted flavopr 98.9 1.6E-08 3.4E-13 111.4 12.2 37 242-281 173-209 (443)
113 PLN02815 L-aspartate oxidase 98.8 5.5E-08 1.2E-12 110.7 16.8 187 243-482 28-223 (594)
114 PRK08641 sdhA succinate dehydr 98.8 8.4E-08 1.8E-12 109.7 18.4 188 244-482 3-201 (589)
115 PRK08244 hypothetical protein; 98.8 1.1E-06 2.3E-11 99.0 27.0 70 405-491 98-168 (493)
116 PRK06263 sdhA succinate dehydr 98.8 7.2E-08 1.6E-12 109.5 17.3 191 243-482 6-198 (543)
117 PRK10262 thioredoxin reductase 98.8 8.1E-09 1.7E-13 109.5 8.9 36 243-281 145-180 (321)
118 PRK12842 putative succinate de 98.8 7.8E-08 1.7E-12 109.9 17.5 63 406-483 213-277 (574)
119 PRK15317 alkyl hydroperoxide r 98.8 1E-08 2.2E-13 115.8 10.1 36 243-281 350-385 (517)
120 PRK07395 L-aspartate oxidase; 98.8 5.9E-08 1.3E-12 109.9 16.2 184 243-482 8-198 (553)
121 PRK06069 sdhA succinate dehydr 98.8 6.8E-08 1.5E-12 110.4 16.8 188 243-482 4-201 (577)
122 PRK06834 hypothetical protein; 98.8 4.5E-07 9.7E-12 101.5 22.9 65 407-491 100-165 (488)
123 TIGR02023 BchP-ChlP geranylger 98.8 6.9E-07 1.5E-11 97.3 23.8 70 403-490 88-163 (388)
124 TIGR01373 soxB sarcosine oxida 98.8 1.1E-08 2.4E-13 112.2 9.7 110 97-220 27-142 (407)
125 PRK06184 hypothetical protein; 98.8 3.5E-07 7.6E-12 103.1 22.1 65 407-491 109-177 (502)
126 PRK12835 3-ketosteroid-delta-1 98.8 3.6E-08 7.7E-13 112.5 14.1 61 408-482 214-276 (584)
127 PRK05714 2-octaprenyl-3-methyl 98.8 3.4E-07 7.4E-12 100.3 21.2 69 403-491 108-177 (405)
128 PRK04176 ribulose-1,5-biphosph 98.8 1.4E-07 2.9E-12 96.4 16.7 69 403-484 100-176 (257)
129 TIGR02734 crtI_fam phytoene de 98.8 8.1E-07 1.8E-11 100.2 24.6 56 407-480 219-275 (502)
130 PRK08020 ubiF 2-octaprenyl-3-m 98.8 5E-07 1.1E-11 98.5 22.2 68 404-491 109-178 (391)
131 TIGR01984 UbiH 2-polyprenyl-6- 98.8 2.9E-07 6.2E-12 100.0 19.9 69 403-491 101-171 (382)
132 TIGR03140 AhpF alkyl hydropero 98.8 1.3E-08 2.8E-13 114.7 9.7 36 243-281 351-386 (515)
133 PRK12839 hypothetical protein; 98.8 7E-08 1.5E-12 109.8 15.5 67 404-483 211-278 (572)
134 PRK06854 adenylylsulfate reduc 98.8 1.1E-07 2.5E-12 108.9 17.2 178 243-484 10-198 (608)
135 PTZ00306 NADH-dependent fumara 98.8 1.2E-07 2.6E-12 116.2 18.4 197 243-483 408-622 (1167)
136 PRK07803 sdhA succinate dehydr 98.8 1.2E-07 2.7E-12 109.0 17.4 188 243-483 7-215 (626)
137 TIGR01372 soxA sarcosine oxida 98.8 1.6E-07 3.5E-12 113.4 19.3 36 99-137 162-197 (985)
138 PRK07512 L-aspartate oxidase; 98.8 6.7E-08 1.5E-12 108.8 15.0 191 240-482 5-198 (513)
139 PRK12845 3-ketosteroid-delta-1 98.8 1.6E-07 3.4E-12 106.7 17.8 62 407-483 217-280 (564)
140 PRK07494 2-octaprenyl-6-methox 98.8 5.5E-07 1.2E-11 98.0 21.3 68 404-491 108-176 (388)
141 PRK09077 L-aspartate oxidase; 98.8 1.8E-07 3.9E-12 106.0 17.9 194 243-482 7-208 (536)
142 TIGR01176 fum_red_Fp fumarate 98.8 1.2E-07 2.6E-12 108.0 16.4 187 244-483 3-197 (580)
143 PRK13512 coenzyme A disulfide 98.8 9.2E-07 2E-11 97.8 22.6 35 244-281 148-182 (438)
144 PRK12844 3-ketosteroid-delta-1 98.8 1.6E-07 3.4E-12 106.8 16.7 61 407-482 208-270 (557)
145 PRK12837 3-ketosteroid-delta-1 98.8 2.2E-07 4.8E-12 104.7 17.6 61 407-482 173-236 (513)
146 PRK10015 oxidoreductase; Provi 98.8 1E-06 2.2E-11 97.1 22.4 67 404-490 105-172 (429)
147 TIGR01811 sdhA_Bsu succinate d 98.8 1.3E-07 2.8E-12 108.3 15.8 191 247-483 1-198 (603)
148 PRK09231 fumarate reductase fl 98.7 1.6E-07 3.4E-12 107.3 16.3 188 243-483 3-198 (582)
149 PRK08275 putative oxidoreducta 98.7 1.7E-07 3.7E-12 106.6 16.3 186 243-482 8-201 (554)
150 TIGR01292 TRX_reduct thioredox 98.7 2.9E-08 6.3E-13 103.8 9.2 33 101-136 1-33 (300)
151 COG1252 Ndh NADH dehydrogenase 98.7 6.8E-08 1.5E-12 103.1 11.8 60 407-488 209-269 (405)
152 PRK08401 L-aspartate oxidase; 98.7 2.7E-07 5.9E-12 102.8 17.2 173 245-484 2-178 (466)
153 PRK12843 putative FAD-binding 98.7 3.3E-07 7.2E-12 104.7 18.0 65 404-483 218-284 (578)
154 PRK06126 hypothetical protein; 98.7 1.5E-06 3.3E-11 99.0 23.1 72 404-491 123-197 (545)
155 PF13738 Pyr_redox_3: Pyridine 98.7 3.5E-08 7.5E-13 97.1 8.3 36 243-281 166-201 (203)
156 PF01494 FAD_binding_3: FAD bi 98.7 3.5E-07 7.6E-12 97.7 16.5 72 403-489 107-179 (356)
157 PLN00093 geranylgeranyl diphos 98.7 3.8E-06 8.3E-11 92.9 25.0 40 239-281 34-73 (450)
158 COG1635 THI4 Ribulose 1,5-bisp 98.7 2.7E-07 5.9E-12 88.2 13.6 143 243-482 29-179 (262)
159 PRK12810 gltD glutamate syntha 98.7 5.6E-07 1.2E-11 100.5 18.6 36 99-137 142-177 (471)
160 PRK14989 nitrite reductase sub 98.7 1.3E-06 2.9E-11 103.3 22.5 36 243-281 144-179 (847)
161 PRK05732 2-octaprenyl-6-methox 98.7 1.5E-06 3.3E-11 94.8 21.4 65 407-491 112-178 (395)
162 TIGR02374 nitri_red_nirB nitri 98.7 9.9E-07 2.1E-11 104.2 21.0 36 243-281 139-174 (785)
163 PLN02985 squalene monooxygenas 98.7 7.1E-06 1.5E-10 92.2 26.9 72 403-489 143-215 (514)
164 PRK07364 2-octaprenyl-6-methox 98.7 1.7E-06 3.8E-11 95.0 21.6 36 243-281 17-52 (415)
165 KOG1298|consensus 98.7 3.7E-08 8.1E-13 101.0 7.1 70 401-484 141-211 (509)
166 PTZ00318 NADH dehydrogenase-li 98.7 7.4E-07 1.6E-11 98.2 18.0 36 99-137 9-44 (424)
167 PLN02172 flavin-containing mon 98.7 7.7E-08 1.7E-12 106.4 10.3 36 99-137 9-44 (461)
168 PF01946 Thi4: Thi4 family; PD 98.7 1.8E-07 3.8E-12 90.2 11.2 142 243-481 16-165 (230)
169 PRK12834 putative FAD-binding 98.6 4.6E-07 1E-11 103.1 16.3 35 243-280 3-37 (549)
170 TIGR02485 CobZ_N-term precorri 98.6 3.2E-07 6.9E-12 101.4 14.0 181 249-482 1-184 (432)
171 PRK05192 tRNA uridine 5-carbox 98.6 4.1E-07 8.9E-12 101.9 14.8 64 402-483 95-159 (618)
172 TIGR00292 thiazole biosynthesi 98.6 1E-06 2.3E-11 89.6 16.4 67 404-482 97-171 (254)
173 PRK08163 salicylate hydroxylas 98.6 2.9E-06 6.2E-11 92.7 21.0 65 403-486 105-171 (396)
174 TIGR02730 carot_isom carotene 98.6 5.8E-07 1.3E-11 101.1 15.8 63 398-481 223-286 (493)
175 TIGR02028 ChlP geranylgeranyl 98.6 6E-06 1.3E-10 90.2 23.0 75 403-490 89-168 (398)
176 PRK12831 putative oxidoreducta 98.6 2.1E-07 4.5E-12 103.5 11.6 36 99-137 139-174 (464)
177 TIGR01789 lycopene_cycl lycope 98.6 1.4E-06 3E-11 94.1 17.5 33 246-281 1-35 (370)
178 PRK09126 hypothetical protein; 98.6 4.2E-06 9.1E-11 91.2 21.6 67 405-491 108-176 (392)
179 PRK08013 oxidoreductase; Provi 98.6 5.7E-06 1.2E-10 90.5 22.2 67 404-490 108-176 (400)
180 PRK06996 hypothetical protein; 98.6 2.5E-06 5.4E-11 93.3 18.6 71 403-490 111-183 (398)
181 PF01266 DAO: FAD dependent ox 98.6 1E-07 2.2E-12 102.0 7.1 95 102-211 1-99 (358)
182 TIGR03364 HpnW_proposed FAD de 98.6 1.2E-07 2.6E-12 102.3 7.6 96 101-212 1-97 (365)
183 PRK13800 putative oxidoreducta 98.6 1.8E-06 3.9E-11 103.6 18.3 186 243-483 12-207 (897)
184 PF01134 GIDA: Glucose inhibit 98.5 6.4E-07 1.4E-11 95.4 12.7 60 402-479 90-150 (392)
185 PRK12409 D-amino acid dehydrog 98.5 1.2E-07 2.6E-12 104.0 7.6 98 101-212 2-150 (410)
186 PF00732 GMC_oxred_N: GMC oxid 98.5 9E-07 1.9E-11 92.6 13.6 67 412-490 197-268 (296)
187 COG0029 NadB Aspartate oxidase 98.5 3.7E-07 8.1E-12 97.5 10.2 184 246-484 9-199 (518)
188 TIGR00275 flavoprotein, HI0933 98.5 5.3E-06 1.1E-10 90.6 19.5 66 406-491 104-180 (400)
189 PRK07208 hypothetical protein; 98.5 3.1E-06 6.7E-11 94.9 18.0 61 407-480 218-279 (479)
190 PRK07843 3-ketosteroid-delta-1 98.5 1.7E-06 3.7E-11 98.5 16.0 61 407-482 208-270 (557)
191 PF04820 Trp_halogenase: Trypt 98.5 4.6E-07 9.9E-12 100.3 11.1 66 399-481 146-211 (454)
192 PRK12779 putative bifunctional 98.5 5.6E-07 1.2E-11 107.4 12.4 36 99-137 305-340 (944)
193 TIGR01316 gltA glutamate synth 98.5 6E-07 1.3E-11 99.5 11.9 36 99-137 132-167 (449)
194 PRK00711 D-amino acid dehydrog 98.5 2E-07 4.3E-12 102.5 7.8 97 102-212 2-151 (416)
195 TIGR02061 aprA adenosine phosp 98.5 2.8E-06 6E-11 97.0 16.8 185 246-484 1-194 (614)
196 TIGR03329 Phn_aa_oxid putative 98.5 3E-07 6.4E-12 102.5 8.6 108 99-219 23-148 (460)
197 PRK07045 putative monooxygenas 98.5 4.7E-05 1E-09 83.0 25.7 36 243-281 4-39 (388)
198 COG0579 Predicted dehydrogenas 98.5 5.9E-07 1.3E-11 96.8 10.1 100 100-212 3-105 (429)
199 PRK08132 FAD-dependent oxidore 98.5 2.9E-05 6.3E-10 88.5 24.3 36 243-281 22-57 (547)
200 PF13434 K_oxygenase: L-lysine 98.5 4E-06 8.6E-11 89.2 15.8 39 100-140 2-40 (341)
201 TIGR03315 Se_ygfK putative sel 98.4 1.4E-06 3.1E-11 103.2 13.2 36 99-137 536-571 (1012)
202 TIGR00136 gidA glucose-inhibit 98.4 2.4E-06 5.1E-11 95.8 14.2 63 402-481 91-154 (617)
203 PRK08243 4-hydroxybenzoate 3-m 98.4 7.7E-05 1.7E-09 81.4 25.9 35 244-281 2-36 (392)
204 TIGR01810 betA choline dehydro 98.4 6.4E-06 1.4E-10 93.5 18.1 67 412-492 198-267 (532)
205 PLN02661 Putative thiazole syn 98.4 4.5E-07 9.7E-12 95.1 7.9 103 7-136 24-126 (357)
206 PRK06567 putative bifunctional 98.4 2.6E-06 5.6E-11 99.4 14.8 35 99-136 382-416 (1028)
207 TIGR01377 soxA_mon sarcosine o 98.4 3E-07 6.4E-12 99.8 6.8 93 101-206 1-93 (380)
208 PRK11883 protoporphyrinogen ox 98.4 2.6E-05 5.6E-10 86.6 22.3 34 245-281 1-36 (451)
209 TIGR00562 proto_IX_ox protopor 98.4 4.2E-05 9.2E-10 85.3 23.9 79 567-645 372-458 (462)
210 COG1232 HemY Protoporphyrinoge 98.4 5.7E-05 1.2E-09 82.1 23.9 34 245-281 1-36 (444)
211 PF12831 FAD_oxidored: FAD dep 98.4 2.5E-07 5.4E-12 101.9 5.6 72 403-491 86-158 (428)
212 TIGR03169 Nterm_to_SelD pyridi 98.4 2E-05 4.3E-10 85.1 20.2 36 102-137 1-36 (364)
213 PRK05868 hypothetical protein; 98.4 5.1E-05 1.1E-09 82.2 23.3 34 245-281 2-35 (372)
214 PRK13977 myosin-cross-reactive 98.4 1.1E-05 2.4E-10 89.8 18.1 67 407-483 226-295 (576)
215 COG1053 SdhA Succinate dehydro 98.4 2E-06 4.4E-11 96.7 12.5 189 243-481 5-202 (562)
216 PRK11259 solA N-methyltryptoph 98.4 5.9E-07 1.3E-11 97.3 8.1 93 100-205 3-96 (376)
217 PLN02612 phytoene desaturase 98.4 0.00012 2.7E-09 83.5 27.2 57 407-480 308-365 (567)
218 PRK11728 hydroxyglutarate oxid 98.4 7.3E-07 1.6E-11 97.3 8.4 100 100-212 2-104 (393)
219 PRK07190 hypothetical protein; 98.4 7.8E-06 1.7E-10 91.5 16.7 65 407-491 109-174 (487)
220 COG1233 Phytoene dehydrogenase 98.4 4.8E-06 1E-10 93.2 15.0 61 398-479 218-279 (487)
221 PRK09853 putative selenate red 98.4 2.3E-06 5E-11 101.0 12.7 36 99-137 538-573 (1019)
222 KOG0404|consensus 98.4 1.3E-06 2.8E-11 83.5 8.5 165 100-281 8-191 (322)
223 PLN02487 zeta-carotene desatur 98.4 8.8E-05 1.9E-09 84.0 24.7 63 408-480 296-359 (569)
224 PRK11445 putative oxidoreducta 98.4 0.00024 5.2E-09 76.3 27.0 67 404-489 96-164 (351)
225 PRK12778 putative bifunctional 98.4 1.8E-06 3.8E-11 102.0 11.5 35 99-136 430-464 (752)
226 COG0654 UbiH 2-polyprenyl-6-me 98.4 4.1E-06 9E-11 91.2 13.6 67 403-489 100-169 (387)
227 COG0665 DadA Glycine/D-amino a 98.3 5.1E-07 1.1E-11 98.1 5.5 93 98-205 2-99 (387)
228 PRK06753 hypothetical protein; 98.3 8.6E-05 1.9E-09 80.3 22.7 33 246-281 2-34 (373)
229 PLN02852 ferredoxin-NADP+ redu 98.3 5.6E-06 1.2E-10 91.7 13.3 38 99-137 25-62 (491)
230 PLN02661 Putative thiazole syn 98.3 1.5E-05 3.2E-10 83.8 15.5 36 243-281 91-127 (357)
231 PRK01747 mnmC bifunctional tRN 98.3 1.4E-06 3.1E-11 101.4 8.8 98 100-212 260-364 (662)
232 KOG0405|consensus 98.3 5.7E-07 1.2E-11 91.3 4.6 40 239-281 184-223 (478)
233 TIGR02731 phytoene_desat phyto 98.3 0.00011 2.3E-09 81.9 23.4 62 406-480 212-275 (453)
234 TIGR02732 zeta_caro_desat caro 98.3 9E-05 1.9E-09 82.8 22.7 33 246-281 1-33 (474)
235 KOG4716|consensus 98.3 8.7E-07 1.9E-11 89.5 5.7 38 241-281 195-232 (503)
236 PRK13339 malate:quinone oxidor 98.3 1.8E-06 4E-11 95.8 8.9 101 99-212 5-129 (497)
237 PF01946 Thi4: Thi4 family; PD 98.3 1.1E-06 2.3E-11 84.8 5.9 35 100-137 17-51 (230)
238 PRK07588 hypothetical protein; 98.3 7.7E-06 1.7E-10 89.2 13.4 58 406-483 102-160 (391)
239 PF13738 Pyr_redox_3: Pyridine 98.3 7.9E-06 1.7E-10 80.2 12.1 58 406-482 81-139 (203)
240 PRK06183 mhpA 3-(3-hydroxyphen 98.3 6.8E-06 1.5E-10 93.5 13.1 68 405-490 111-182 (538)
241 COG1635 THI4 Ribulose 1,5-bisp 98.3 2E-06 4.3E-11 82.4 7.3 35 100-137 30-64 (262)
242 TIGR01320 mal_quin_oxido malat 98.3 2.2E-06 4.8E-11 95.5 8.8 100 101-212 1-123 (483)
243 PRK06617 2-octaprenyl-6-methox 98.3 1.7E-05 3.7E-10 85.9 15.3 67 403-490 100-168 (374)
244 PRK05976 dihydrolipoamide dehy 98.3 2.9E-05 6.3E-10 86.9 17.5 36 243-281 3-38 (472)
245 PRK11749 dihydropyrimidine deh 98.2 6E-06 1.3E-10 92.0 11.9 36 99-137 139-174 (457)
246 PRK12770 putative glutamate sy 98.2 9.3E-06 2E-10 87.2 12.6 35 100-137 18-52 (352)
247 PLN02576 protoporphyrinogen ox 98.2 0.00019 4.1E-09 80.9 23.7 36 243-281 11-47 (496)
248 PRK08294 phenol 2-monooxygenas 98.2 0.00027 5.9E-09 81.7 24.5 36 243-281 31-67 (634)
249 KOG2404|consensus 98.2 1.4E-05 3.1E-10 80.5 11.4 68 408-489 140-217 (477)
250 PF00743 FMO-like: Flavin-bind 98.2 4.9E-06 1.1E-10 93.5 9.2 36 243-281 182-217 (531)
251 TIGR01292 TRX_reduct thioredox 98.2 2.8E-05 6.1E-10 81.2 14.2 55 408-481 58-112 (300)
252 PRK05257 malate:quinone oxidor 98.2 4.6E-06 9.9E-11 93.2 8.7 102 99-212 4-128 (494)
253 PRK08849 2-octaprenyl-3-methyl 98.2 1.7E-05 3.6E-10 86.3 13.0 64 407-490 110-175 (384)
254 PRK06467 dihydrolipoamide dehy 98.2 6E-05 1.3E-09 84.2 17.5 36 243-281 3-38 (471)
255 TIGR01424 gluta_reduc_2 glutat 98.2 4.1E-05 8.9E-10 85.0 16.0 35 244-281 2-36 (446)
256 PRK12775 putative trifunctiona 98.2 1E-05 2.3E-10 97.5 12.1 36 99-137 429-464 (1006)
257 PRK02106 choline dehydrogenase 98.2 0.00014 3E-09 83.2 20.7 60 419-492 213-274 (560)
258 KOG1399|consensus 98.2 6.3E-06 1.4E-10 89.9 9.1 35 100-137 6-40 (448)
259 PRK08850 2-octaprenyl-6-methox 98.1 3.8E-05 8.1E-10 84.2 15.3 64 407-490 111-176 (405)
260 TIGR02733 desat_CrtD C-3',4' d 98.1 6.4E-05 1.4E-09 84.6 17.4 60 407-480 232-293 (492)
261 PRK12814 putative NADPH-depend 98.1 7.8E-06 1.7E-10 94.7 10.1 35 100-137 193-227 (652)
262 PLN02507 glutathione reductase 98.1 5.3E-05 1.1E-09 85.1 16.0 33 243-278 24-56 (499)
263 PRK12769 putative oxidoreducta 98.1 1.4E-05 3.1E-10 92.9 11.6 36 99-137 326-361 (654)
264 KOG2960|consensus 98.1 1.2E-06 2.7E-11 82.9 2.1 68 56-137 45-112 (328)
265 TIGR03143 AhpF_homolog putativ 98.1 3.8E-05 8.3E-10 87.5 14.5 36 243-281 3-38 (555)
266 PTZ00383 malate:quinone oxidor 98.1 7.8E-06 1.7E-10 91.1 8.6 37 99-136 44-80 (497)
267 PLN02172 flavin-containing mon 98.1 4.5E-05 9.7E-10 84.6 14.5 36 243-281 9-44 (461)
268 KOG2665|consensus 98.1 7.8E-06 1.7E-10 82.1 7.3 159 97-274 45-214 (453)
269 PRK11101 glpA sn-glycerol-3-ph 98.1 5.8E-06 1.3E-10 93.9 7.5 50 99-163 5-54 (546)
270 COG0445 GidA Flavin-dependent 98.1 1.3E-05 2.8E-10 86.7 9.5 157 243-483 3-160 (621)
271 COG0492 TrxB Thioredoxin reduc 98.1 3.4E-05 7.5E-10 80.4 12.4 59 406-484 60-118 (305)
272 PRK07845 flavoprotein disulfid 98.1 0.00016 3.5E-09 80.7 18.6 34 245-281 2-35 (466)
273 PRK06116 glutathione reductase 98.1 6.5E-05 1.4E-09 83.5 15.2 35 244-281 4-38 (450)
274 PRK13369 glycerol-3-phosphate 98.1 4.2E-06 9.1E-11 94.2 5.7 51 97-162 3-53 (502)
275 PLN02546 glutathione reductase 98.1 8.3E-05 1.8E-09 84.3 16.1 33 243-278 78-110 (558)
276 PRK07236 hypothetical protein; 98.1 5.2E-05 1.1E-09 82.5 14.0 36 243-281 5-40 (386)
277 PF13450 NAD_binding_8: NAD(P) 98.0 7.5E-06 1.6E-10 65.3 5.2 30 105-137 1-30 (68)
278 KOG2820|consensus 98.0 6.3E-06 1.4E-10 83.8 5.9 93 97-202 4-96 (399)
279 PRK05249 soluble pyridine nucl 98.0 0.00012 2.6E-09 81.7 16.7 36 243-281 4-39 (461)
280 TIGR01317 GOGAT_sm_gam glutama 98.0 3.1E-05 6.8E-10 86.6 12.1 35 100-137 143-177 (485)
281 TIGR01318 gltD_gamma_fam gluta 98.0 2.7E-05 6E-10 86.7 11.5 36 99-137 140-175 (467)
282 PRK12266 glpD glycerol-3-phosp 98.0 5.5E-06 1.2E-10 93.3 5.9 50 98-162 4-53 (508)
283 PRK06475 salicylate hydroxylas 98.0 5.2E-05 1.1E-09 83.0 13.4 34 245-281 3-36 (400)
284 PRK06416 dihydrolipoamide dehy 98.0 0.00011 2.3E-09 82.1 16.2 36 243-281 3-38 (462)
285 TIGR01421 gluta_reduc_1 glutat 98.0 9.4E-05 2E-09 82.2 15.4 36 243-281 1-36 (450)
286 TIGR01989 COQ6 Ubiquinone bios 98.0 5.3E-05 1.1E-09 83.9 13.0 75 404-491 114-192 (437)
287 PRK14694 putative mercuric red 98.0 0.00012 2.6E-09 81.8 15.9 37 242-281 4-40 (468)
288 PF05834 Lycopene_cycl: Lycope 98.0 5.9E-06 1.3E-10 89.5 4.9 45 102-149 1-53 (374)
289 KOG1336|consensus 98.0 0.0001 2.2E-09 78.8 14.0 53 411-480 259-312 (478)
290 TIGR03219 salicylate_mono sali 98.0 6.8E-05 1.5E-09 82.4 13.3 58 404-482 102-160 (414)
291 PRK06327 dihydrolipoamide dehy 98.0 0.00018 3.9E-09 80.6 16.6 33 243-278 3-35 (475)
292 PRK06115 dihydrolipoamide dehy 98.0 0.00019 4.2E-09 80.1 16.7 34 244-280 3-36 (466)
293 KOG2415|consensus 98.0 6.2E-05 1.4E-09 78.4 11.4 76 401-491 177-269 (621)
294 PF13454 NAD_binding_9: FAD-NA 98.0 4E-05 8.6E-10 72.1 9.3 34 248-281 1-36 (156)
295 TIGR02360 pbenz_hydroxyl 4-hyd 98.0 9.4E-05 2E-09 80.6 13.6 35 244-281 2-36 (390)
296 COG3380 Predicted NAD/FAD-depe 97.9 8.1E-05 1.8E-09 73.8 11.3 33 246-281 3-35 (331)
297 PRK12809 putative oxidoreducta 97.9 5.6E-05 1.2E-09 87.6 12.0 36 99-137 309-344 (639)
298 PRK12416 protoporphyrinogen ox 97.9 5.5E-05 1.2E-09 84.4 11.5 34 245-281 2-41 (463)
299 PRK07538 hypothetical protein; 97.9 0.00014 3.1E-09 79.9 14.1 34 245-281 1-34 (413)
300 TIGR02462 pyranose_ox pyranose 97.9 0.00033 7.1E-09 78.7 16.8 62 419-491 226-290 (544)
301 COG0644 FixC Dehydrogenases (f 97.9 1.1E-05 2.4E-10 88.1 4.9 36 99-137 2-37 (396)
302 PTZ00367 squalene epoxidase; P 97.9 0.00019 4.2E-09 81.3 14.9 35 243-280 32-66 (567)
303 PRK09897 hypothetical protein; 97.9 9.6E-05 2.1E-09 83.0 12.3 36 245-281 2-37 (534)
304 COG2509 Uncharacterized FAD-de 97.9 0.00056 1.2E-08 72.9 17.1 67 403-487 169-236 (486)
305 PTZ00058 glutathione reductase 97.9 0.00013 2.8E-09 82.8 13.3 47 243-302 47-93 (561)
306 TIGR01350 lipoamide_DH dihydro 97.9 0.00033 7.1E-09 78.2 16.4 34 245-281 2-35 (461)
307 TIGR00292 thiazole biosynthesi 97.9 1.7E-05 3.7E-10 80.7 5.5 35 100-137 21-55 (254)
308 PLN02464 glycerol-3-phosphate 97.9 1.5E-05 3.2E-10 91.8 5.6 47 100-161 71-117 (627)
309 PTZ00363 rab-GDP dissociation 97.9 0.0004 8.6E-09 76.4 16.3 59 407-482 232-291 (443)
310 COG1231 Monoamine oxidase [Ami 97.8 0.00014 3E-09 77.7 12.1 37 242-281 5-41 (450)
311 PRK06370 mercuric reductase; V 97.8 0.00035 7.6E-09 78.0 16.0 36 243-281 4-39 (463)
312 PRK05675 sdhA succinate dehydr 97.8 0.0002 4.3E-09 81.8 13.8 65 406-483 125-191 (570)
313 PRK07818 dihydrolipoamide dehy 97.8 0.00039 8.5E-09 77.7 15.7 35 244-281 4-38 (466)
314 PRK06912 acoL dihydrolipoamide 97.8 0.00058 1.3E-08 76.1 16.9 33 246-281 2-34 (458)
315 PRK13748 putative mercuric red 97.8 0.00022 4.7E-09 81.7 13.9 36 243-281 97-132 (561)
316 KOG2844|consensus 97.8 5.5E-05 1.2E-09 83.2 8.0 106 96-216 35-143 (856)
317 PRK10262 thioredoxin reductase 97.8 0.00039 8.4E-09 73.6 14.3 36 243-281 5-40 (321)
318 PRK10015 oxidoreductase; Provi 97.8 2.3E-05 5.1E-10 86.3 5.0 35 100-137 5-39 (429)
319 PRK04176 ribulose-1,5-biphosph 97.8 3.6E-05 7.8E-10 78.6 5.9 35 100-137 25-59 (257)
320 PLN02927 antheraxanthin epoxid 97.8 0.0009 2E-08 76.7 17.7 35 243-280 80-114 (668)
321 COG2303 BetA Choline dehydroge 97.7 0.0005 1.1E-08 77.9 15.2 62 416-491 212-277 (542)
322 KOG2614|consensus 97.7 0.001 2.2E-08 70.2 16.1 34 245-281 3-36 (420)
323 COG1233 Phytoene dehydrogenase 97.7 2.9E-05 6.3E-10 87.0 5.0 35 100-137 3-37 (487)
324 PRK13984 putative oxidoreducta 97.7 0.00017 3.6E-09 83.4 11.4 36 99-137 282-317 (604)
325 PRK10157 putative oxidoreducta 97.7 2.9E-05 6.2E-10 85.7 4.9 35 100-137 5-39 (428)
326 PF01494 FAD_binding_3: FAD bi 97.7 3E-05 6.5E-10 82.8 4.8 35 100-137 1-35 (356)
327 TIGR02023 BchP-ChlP geranylger 97.7 3.4E-05 7.5E-10 84.0 5.3 32 101-135 1-32 (388)
328 PLN00093 geranylgeranyl diphos 97.7 3.6E-05 7.9E-10 85.2 5.4 36 98-136 37-72 (450)
329 COG2081 Predicted flavoprotein 97.7 3E-05 6.4E-10 81.4 4.3 35 100-137 3-37 (408)
330 PRK07364 2-octaprenyl-6-methox 97.7 3.6E-05 7.8E-10 84.6 5.2 37 97-136 15-51 (415)
331 PRK14727 putative mercuric red 97.7 0.0011 2.5E-08 74.2 17.3 37 242-281 14-50 (479)
332 TIGR01438 TGR thioredoxin and 97.7 0.0012 2.7E-08 73.9 17.4 33 244-279 2-34 (484)
333 TIGR02032 GG-red-SF geranylger 97.7 3.7E-05 8E-10 79.9 4.8 34 101-137 1-34 (295)
334 PRK15317 alkyl hydroperoxide r 97.7 0.0005 1.1E-08 77.8 14.2 56 407-481 266-322 (517)
335 TIGR02053 MerA mercuric reduct 97.7 0.00069 1.5E-08 75.7 15.1 34 245-281 1-34 (463)
336 COG1249 Lpd Pyruvate/2-oxoglut 97.7 0.0012 2.5E-08 72.7 16.2 47 243-302 3-50 (454)
337 PRK07251 pyridine nucleotide-d 97.7 0.00055 1.2E-08 75.8 14.0 35 244-281 3-37 (438)
338 PRK08010 pyridine nucleotide-d 97.7 0.00039 8.4E-09 77.1 12.8 35 244-281 3-37 (441)
339 PRK07608 ubiquinone biosynthes 97.7 4.3E-05 9.4E-10 83.1 5.1 36 99-137 4-39 (388)
340 TIGR01789 lycopene_cycl lycope 97.7 5.2E-05 1.1E-09 81.9 5.5 34 102-136 1-34 (370)
341 PF00743 FMO-like: Flavin-bind 97.7 0.00031 6.8E-09 79.1 11.9 69 404-484 81-153 (531)
342 PF03486 HI0933_like: HI0933-l 97.7 3.9E-05 8.5E-10 83.4 4.5 34 101-137 1-34 (409)
343 PLN02785 Protein HOTHEAD 97.7 0.00081 1.8E-08 76.8 15.3 35 243-281 54-88 (587)
344 PLN02463 lycopene beta cyclase 97.7 4.9E-05 1.1E-09 83.8 5.2 35 99-136 27-61 (447)
345 COG3573 Predicted oxidoreducta 97.6 0.00095 2.1E-08 67.9 13.7 36 243-281 4-39 (552)
346 PRK08274 tricarballylate dehyd 97.6 4.7E-05 1E-09 85.1 5.1 36 98-136 2-37 (466)
347 PLN02676 polyamine oxidase 97.6 0.00062 1.3E-08 76.3 14.0 36 243-281 25-61 (487)
348 PRK07494 2-octaprenyl-6-methox 97.6 4.6E-05 9.9E-10 83.0 4.8 35 99-136 6-40 (388)
349 COG0578 GlpA Glycerol-3-phosph 97.6 6.3E-05 1.4E-09 83.0 5.6 54 99-167 11-64 (532)
350 PRK05714 2-octaprenyl-3-methyl 97.6 4.2E-05 9.2E-10 83.8 4.4 34 100-136 2-35 (405)
351 TIGR03140 AhpF alkyl hydropero 97.6 0.0006 1.3E-08 77.1 13.8 56 407-481 267-323 (515)
352 PF13450 NAD_binding_8: NAD(P) 97.6 6.9E-05 1.5E-09 59.7 4.3 30 249-281 1-30 (68)
353 PRK09126 hypothetical protein; 97.6 5E-05 1.1E-09 82.8 4.8 34 100-136 3-36 (392)
354 PRK06292 dihydrolipoamide dehy 97.6 0.0011 2.4E-08 73.9 15.6 36 243-281 2-37 (460)
355 PRK08773 2-octaprenyl-3-methyl 97.6 5.4E-05 1.2E-09 82.6 4.9 35 99-136 5-39 (392)
356 PRK07208 hypothetical protein; 97.6 8.6E-05 1.9E-09 83.3 6.6 37 98-137 2-38 (479)
357 COG3486 IucD Lysine/ornithine 97.6 0.0014 3E-08 69.1 14.7 41 98-140 3-43 (436)
358 PRK08013 oxidoreductase; Provi 97.6 5.7E-05 1.2E-09 82.7 4.9 34 100-136 3-36 (400)
359 TIGR01790 carotene-cycl lycope 97.6 6E-05 1.3E-09 82.1 5.0 33 102-137 1-33 (388)
360 TIGR00031 UDP-GALP_mutase UDP- 97.6 6.3E-05 1.4E-09 80.8 4.9 40 101-143 2-42 (377)
361 PRK06185 hypothetical protein; 97.6 6.1E-05 1.3E-09 82.6 4.8 35 99-136 5-39 (407)
362 PRK06481 fumarate reductase fl 97.6 9.3E-05 2E-09 83.4 6.3 36 99-137 60-95 (506)
363 PRK07121 hypothetical protein; 97.6 0.0001 2.2E-09 82.9 6.6 36 99-137 19-54 (492)
364 TIGR01423 trypano_reduc trypan 97.6 0.0023 4.9E-08 71.7 17.2 34 243-279 2-36 (486)
365 KOG1399|consensus 97.6 0.00068 1.5E-08 74.2 12.5 36 243-281 5-40 (448)
366 PRK08020 ubiF 2-octaprenyl-3-m 97.6 6.3E-05 1.4E-09 82.0 4.7 35 99-136 4-38 (391)
367 TIGR01816 sdhA_forward succina 97.6 0.00079 1.7E-08 76.9 13.5 64 406-483 118-183 (565)
368 KOG1298|consensus 97.6 7.5E-05 1.6E-09 77.3 4.5 36 98-136 43-78 (509)
369 PLN02568 polyamine oxidase 97.5 0.0017 3.6E-08 73.5 15.7 36 243-281 4-44 (539)
370 COG2072 TrkA Predicted flavopr 97.5 0.00067 1.4E-08 75.0 12.2 37 242-281 6-43 (443)
371 PTZ00363 rab-GDP dissociation 97.5 8.4E-05 1.8E-09 81.7 5.0 40 97-139 1-40 (443)
372 PRK08850 2-octaprenyl-6-methox 97.5 7.9E-05 1.7E-09 81.7 4.8 33 100-135 4-36 (405)
373 PRK08849 2-octaprenyl-3-methyl 97.5 8.1E-05 1.7E-09 81.0 4.8 34 100-136 3-36 (384)
374 PRK07846 mycothione reductase; 97.5 0.0014 3.1E-08 72.8 14.7 43 245-302 2-44 (451)
375 PRK12771 putative glutamate sy 97.5 0.00011 2.3E-09 84.1 5.9 35 100-137 137-171 (564)
376 TIGR01989 COQ6 Ubiquinone bios 97.5 8E-05 1.7E-09 82.5 4.4 33 101-136 1-37 (437)
377 PLN02697 lycopene epsilon cycl 97.5 0.0001 2.2E-09 82.8 5.2 35 99-136 107-141 (529)
378 TIGR02360 pbenz_hydroxyl 4-hyd 97.5 9.4E-05 2E-09 80.6 4.7 34 100-136 2-35 (390)
379 COG0654 UbiH 2-polyprenyl-6-me 97.5 9.3E-05 2E-09 80.6 4.5 33 100-135 2-34 (387)
380 PRK07045 putative monooxygenas 97.5 0.0001 2.2E-09 80.2 4.9 35 99-136 4-38 (388)
381 PTZ00153 lipoamide dehydrogena 97.5 0.0038 8.2E-08 72.1 17.7 49 243-302 115-163 (659)
382 PLN02985 squalene monooxygenas 97.5 0.00012 2.6E-09 82.5 5.4 37 97-136 40-76 (514)
383 KOG4254|consensus 97.5 0.00062 1.3E-08 72.1 10.2 67 394-481 254-321 (561)
384 TIGR02028 ChlP geranylgeranyl 97.5 0.00011 2.3E-09 80.3 4.6 33 101-136 1-33 (398)
385 PRK08244 hypothetical protein; 97.4 0.00011 2.4E-09 82.6 4.8 35 100-137 2-36 (493)
386 PRK05192 tRNA uridine 5-carbox 97.4 0.00011 2.4E-09 82.7 4.7 35 99-136 3-37 (618)
387 PRK08163 salicylate hydroxylas 97.4 0.00012 2.7E-09 79.8 4.8 34 100-136 4-37 (396)
388 COG2907 Predicted NAD/FAD-bind 97.4 0.00036 7.7E-09 71.5 7.6 35 243-281 7-41 (447)
389 TIGR01988 Ubi-OHases Ubiquinon 97.4 0.00012 2.6E-09 79.4 4.6 33 102-137 1-33 (385)
390 COG0493 GltD NADPH-dependent g 97.4 0.00049 1.1E-08 75.7 9.3 34 101-137 124-157 (457)
391 PRK06184 hypothetical protein; 97.4 0.00013 2.8E-09 82.4 4.9 35 100-137 3-37 (502)
392 PRK06847 hypothetical protein; 97.4 0.00014 3E-09 78.8 4.9 35 99-136 3-37 (375)
393 PRK12779 putative bifunctional 97.4 0.00046 1E-08 82.8 9.7 37 242-281 304-340 (944)
394 PF12831 FAD_oxidored: FAD dep 97.4 0.00013 2.9E-09 80.4 4.7 33 102-137 1-33 (428)
395 KOG1335|consensus 97.4 0.0024 5.2E-08 66.4 13.3 48 243-302 38-85 (506)
396 PF00732 GMC_oxred_N: GMC oxid 97.4 0.00012 2.6E-09 76.5 4.1 34 101-137 1-35 (296)
397 TIGR02730 carot_isom carotene 97.4 0.00014 3.1E-09 81.8 4.9 34 101-137 1-34 (493)
398 TIGR01813 flavo_cyto_c flavocy 97.4 0.00017 3.7E-09 79.9 5.4 33 102-137 1-34 (439)
399 PLN00128 Succinate dehydrogena 97.4 0.00018 3.9E-09 82.9 5.7 36 99-137 49-84 (635)
400 TIGR03169 Nterm_to_SelD pyridi 97.4 0.00067 1.5E-08 73.2 9.8 36 246-281 1-36 (364)
401 PRK05732 2-octaprenyl-6-methox 97.4 0.00015 3.3E-09 79.0 4.9 36 100-135 3-38 (395)
402 KOG0029|consensus 97.4 0.00018 3.8E-09 80.2 5.3 37 98-137 13-49 (501)
403 PRK08243 4-hydroxybenzoate 3-m 97.4 0.00015 3.2E-09 79.2 4.7 34 100-136 2-35 (392)
404 COG3380 Predicted NAD/FAD-depe 97.4 0.00017 3.6E-09 71.6 4.5 32 102-136 3-34 (331)
405 PRK07804 L-aspartate oxidase; 97.4 0.00022 4.7E-09 81.1 6.1 37 98-137 14-50 (541)
406 KOG2311|consensus 97.4 0.00063 1.4E-08 72.3 8.9 69 401-482 118-187 (679)
407 PF00890 FAD_binding_2: FAD bi 97.4 0.00016 3.4E-09 79.6 4.8 33 102-137 1-33 (417)
408 PTZ00052 thioredoxin reductase 97.4 0.0038 8.3E-08 70.3 16.0 33 244-279 5-37 (499)
409 PRK07233 hypothetical protein; 97.4 0.00023 4.9E-09 78.6 5.9 33 102-137 1-33 (434)
410 KOG2415|consensus 97.4 0.00019 4.1E-09 74.9 4.8 38 100-137 76-116 (621)
411 PRK07236 hypothetical protein; 97.4 0.00018 3.8E-09 78.4 4.8 34 100-136 6-39 (386)
412 PRK07333 2-octaprenyl-6-methox 97.4 0.00016 3.5E-09 79.1 4.4 33 101-136 2-36 (403)
413 PTZ00367 squalene epoxidase; P 97.3 0.0002 4.4E-09 81.2 5.2 35 99-136 32-66 (567)
414 TIGR01984 UbiH 2-polyprenyl-6- 97.3 0.00017 3.6E-09 78.4 4.5 33 102-137 1-34 (382)
415 PTZ00318 NADH dehydrogenase-li 97.3 0.0011 2.3E-08 73.2 10.7 36 243-281 9-44 (424)
416 PRK06617 2-octaprenyl-6-methox 97.3 0.00017 3.6E-09 78.2 4.3 33 101-136 2-34 (374)
417 PRK06126 hypothetical protein; 97.3 0.00021 4.6E-09 81.5 5.2 35 99-136 6-40 (545)
418 PRK07190 hypothetical protein; 97.3 0.0002 4.3E-09 80.3 4.9 35 100-137 5-39 (487)
419 KOG2852|consensus 97.3 0.00017 3.6E-09 72.0 3.5 76 101-188 11-89 (380)
420 PRK09078 sdhA succinate dehydr 97.3 0.00025 5.5E-09 81.5 5.6 36 99-137 11-46 (598)
421 PRK06834 hypothetical protein; 97.3 0.00021 4.6E-09 80.1 4.9 34 100-136 3-36 (488)
422 PRK12837 3-ketosteroid-delta-1 97.3 0.00025 5.3E-09 80.2 5.3 34 100-137 7-40 (513)
423 PRK08132 FAD-dependent oxidore 97.3 0.00024 5.3E-09 81.0 5.2 37 98-137 21-57 (547)
424 PRK12842 putative succinate de 97.3 0.00034 7.3E-09 80.2 6.3 35 100-137 9-43 (574)
425 PRK08294 phenol 2-monooxygenas 97.3 0.00025 5.4E-09 81.9 5.1 38 97-137 29-67 (634)
426 PRK12835 3-ketosteroid-delta-1 97.3 0.00031 6.7E-09 80.5 5.5 37 98-137 9-45 (584)
427 PTZ00188 adrenodoxin reductase 97.3 0.0017 3.6E-08 71.4 10.8 35 100-137 39-74 (506)
428 PRK07803 sdhA succinate dehydr 97.3 0.00029 6.3E-09 81.4 5.3 36 99-137 7-42 (626)
429 PTZ00139 Succinate dehydrogena 97.3 0.0003 6.5E-09 81.0 5.4 36 99-137 28-63 (617)
430 PRK06753 hypothetical protein; 97.2 0.00026 5.7E-09 76.6 4.6 32 102-136 2-33 (373)
431 PRK08641 sdhA succinate dehydr 97.2 0.00032 6.9E-09 80.5 5.4 35 100-137 3-37 (589)
432 TIGR02733 desat_CrtD C-3',4' d 97.2 0.0003 6.4E-09 79.2 5.1 34 101-137 2-35 (492)
433 PRK06183 mhpA 3-(3-hydroxyphen 97.2 0.00034 7.4E-09 79.6 5.6 37 98-137 8-44 (538)
434 PRK12834 putative FAD-binding 97.2 0.0003 6.6E-09 80.1 5.1 35 99-136 3-37 (549)
435 PRK06452 sdhA succinate dehydr 97.2 0.00034 7.3E-09 79.9 5.2 35 100-137 5-39 (566)
436 PRK07588 hypothetical protein; 97.2 0.00029 6.3E-09 76.8 4.5 32 102-136 2-33 (391)
437 PRK07573 sdhA succinate dehydr 97.2 0.00037 8E-09 80.6 5.5 35 99-136 34-68 (640)
438 TIGR03452 mycothione_red mycot 97.2 0.0044 9.5E-08 69.0 13.7 44 244-302 2-45 (452)
439 PLN02268 probable polyamine ox 97.2 0.00034 7.4E-09 77.4 4.8 33 102-137 2-34 (435)
440 PRK11883 protoporphyrinogen ox 97.2 0.00037 8.1E-09 77.4 5.0 33 102-137 2-36 (451)
441 PRK08958 sdhA succinate dehydr 97.2 0.00036 7.7E-09 80.0 4.9 35 100-137 7-41 (588)
442 PRK07057 sdhA succinate dehydr 97.2 0.00041 8.9E-09 79.6 5.4 36 99-137 11-46 (591)
443 PF07992 Pyr_redox_2: Pyridine 97.2 0.00043 9.4E-09 67.6 4.8 32 102-136 1-32 (201)
444 PRK09564 coenzyme A disulfide 97.2 0.0031 6.8E-08 70.0 12.2 35 246-281 2-36 (444)
445 PRK07538 hypothetical protein; 97.2 0.00037 8.1E-09 76.6 4.6 32 102-136 2-33 (413)
446 TIGR02734 crtI_fam phytoene de 97.2 0.00032 7E-09 79.1 4.2 32 103-137 1-32 (502)
447 PRK12844 3-ketosteroid-delta-1 97.1 0.00044 9.6E-09 78.8 5.2 35 100-137 6-40 (557)
448 PRK06996 hypothetical protein; 97.1 0.00037 8.1E-09 76.2 4.5 39 98-136 9-48 (398)
449 PRK12845 3-ketosteroid-delta-1 97.1 0.0006 1.3E-08 77.6 6.2 35 99-137 15-49 (564)
450 PRK07395 L-aspartate oxidase; 97.1 0.00049 1.1E-08 78.2 5.3 37 97-137 6-42 (553)
451 PRK11445 putative oxidoreducta 97.1 0.00039 8.4E-09 74.7 4.3 32 101-136 2-33 (351)
452 PRK06069 sdhA succinate dehydr 97.1 0.00049 1.1E-08 78.9 5.3 35 100-137 5-42 (577)
453 COG3349 Uncharacterized conser 97.1 0.00069 1.5E-08 73.7 6.1 46 245-299 1-46 (485)
454 PRK05335 tRNA (uracil-5-)-meth 97.1 0.00045 9.6E-09 74.7 4.6 34 101-137 3-36 (436)
455 PRK06175 L-aspartate oxidase; 97.1 0.00039 8.5E-09 76.8 4.3 35 99-137 3-37 (433)
456 PRK05868 hypothetical protein; 97.1 0.00044 9.5E-09 74.9 4.5 33 101-136 2-34 (372)
457 PLN02576 protoporphyrinogen ox 97.1 0.00055 1.2E-08 77.1 5.4 38 98-137 10-47 (496)
458 PLN02815 L-aspartate oxidase 97.1 0.00052 1.1E-08 78.5 5.1 35 99-137 28-62 (594)
459 PLN02927 antheraxanthin epoxid 97.1 0.00057 1.2E-08 78.3 5.0 36 98-136 79-114 (668)
460 PRK08626 fumarate reductase fl 97.1 0.0005 1.1E-08 79.7 4.6 35 100-137 5-39 (657)
461 PRK08401 L-aspartate oxidase; 97.0 0.00054 1.2E-08 76.5 4.6 33 101-136 2-34 (466)
462 PRK07843 3-ketosteroid-delta-1 97.0 0.0007 1.5E-08 77.2 5.6 35 100-137 7-41 (557)
463 PRK02106 choline dehydrogenase 97.0 0.00055 1.2E-08 78.3 4.8 35 99-136 4-39 (560)
464 PRK05945 sdhA succinate dehydr 97.0 0.00053 1.2E-08 78.6 4.6 37 100-137 3-39 (575)
465 COG0562 Glf UDP-galactopyranos 97.0 0.00067 1.5E-08 69.0 4.6 33 101-136 2-34 (374)
466 PRK12843 putative FAD-binding 97.0 0.0013 2.8E-08 75.4 7.6 37 98-137 14-50 (578)
467 TIGR00562 proto_IX_ox protopor 97.0 0.00085 1.8E-08 74.8 5.9 37 101-137 3-40 (462)
468 TIGR01812 sdhA_frdA_Gneg succi 97.0 0.0007 1.5E-08 77.6 5.1 33 102-137 1-33 (566)
469 TIGR00551 nadB L-aspartate oxi 97.0 0.00079 1.7E-08 75.6 5.2 34 100-137 2-35 (488)
470 PTZ00306 NADH-dependent fumara 97.0 0.0013 2.9E-08 81.1 7.6 36 99-137 408-443 (1167)
471 PRK06475 salicylate hydroxylas 97.0 0.00071 1.5E-08 74.0 4.6 33 101-136 3-35 (400)
472 PRK12839 hypothetical protein; 97.0 0.0013 2.7E-08 75.3 6.6 37 98-137 6-42 (572)
473 COG1231 Monoamine oxidase [Ami 96.9 0.001 2.2E-08 71.3 5.1 37 98-137 5-41 (450)
474 PRK09231 fumarate reductase fl 96.9 0.00091 2E-08 76.6 5.3 37 100-137 4-40 (582)
475 PLN02529 lysine-specific histo 96.9 0.01 2.2E-07 69.1 13.7 205 242-477 158-403 (738)
476 COG1252 Ndh NADH dehydrogenase 96.9 0.0034 7.5E-08 67.5 9.2 38 243-281 2-39 (405)
477 TIGR00137 gid_trmFO tRNA:m(5)U 96.9 0.00084 1.8E-08 72.9 4.6 34 101-137 1-34 (433)
478 PRK06263 sdhA succinate dehydr 96.9 0.00092 2E-08 76.1 5.1 34 100-137 7-40 (543)
479 PRK13977 myosin-cross-reactive 96.9 0.0016 3.5E-08 72.9 6.7 38 100-137 22-60 (576)
480 COG1232 HemY Protoporphyrinoge 96.9 0.00087 1.9E-08 73.1 4.5 33 102-137 2-36 (444)
481 PRK08205 sdhA succinate dehydr 96.9 0.001 2.2E-08 76.4 5.2 35 99-137 4-38 (583)
482 COG3573 Predicted oxidoreducta 96.9 0.001 2.3E-08 67.7 4.6 34 100-136 5-38 (552)
483 PLN02568 polyamine oxidase 96.9 0.0012 2.5E-08 74.8 5.5 39 99-137 4-44 (539)
484 PF00070 Pyr_redox: Pyridine n 96.9 0.0018 3.9E-08 53.3 5.1 33 246-281 1-33 (80)
485 TIGR02731 phytoene_desat phyto 96.9 0.0012 2.5E-08 73.6 5.3 33 102-137 1-33 (453)
486 PRK12416 protoporphyrinogen ox 96.9 0.0011 2.3E-08 74.2 4.8 36 102-137 3-41 (463)
487 COG1053 SdhA Succinate dehydro 96.8 0.0012 2.7E-08 74.5 5.0 36 99-137 5-40 (562)
488 TIGR01176 fum_red_Fp fumarate 96.8 0.0014 3E-08 75.1 5.3 37 100-137 3-39 (580)
489 PRK08275 putative oxidoreducta 96.8 0.0012 2.7E-08 75.2 4.9 38 99-137 8-45 (554)
490 COG3349 Uncharacterized conser 96.8 0.0013 2.8E-08 71.7 4.6 33 102-137 2-34 (485)
491 PRK06134 putative FAD-binding 96.8 0.0025 5.4E-08 73.1 7.2 37 98-137 10-46 (581)
492 COG4529 Uncharacterized protei 96.8 0.0071 1.5E-07 65.4 10.1 36 245-281 2-38 (474)
493 PLN02676 polyamine oxidase 96.8 0.0015 3.3E-08 73.1 5.2 36 99-137 25-61 (487)
494 COG0446 HcaD Uncharacterized N 96.8 0.014 3E-07 63.7 12.7 35 244-281 136-170 (415)
495 TIGR02061 aprA adenosine phosp 96.7 0.0013 2.9E-08 75.3 4.6 33 102-137 1-37 (614)
496 KOG4716|consensus 96.7 0.0047 1E-07 63.2 7.9 57 242-302 17-73 (503)
497 PRK08071 L-aspartate oxidase; 96.7 0.0015 3.3E-08 73.7 4.9 34 100-137 3-36 (510)
498 KOG1238|consensus 96.7 0.032 7E-07 62.5 15.0 223 243-490 56-328 (623)
499 PRK06854 adenylylsulfate reduc 96.7 0.0015 3.2E-08 75.3 4.9 38 99-137 10-47 (608)
500 PF00070 Pyr_redox: Pyridine n 96.7 0.0027 5.8E-08 52.3 5.1 32 103-137 2-33 (80)
No 1
>KOG2853|consensus
Probab=100.00 E-value=6.6e-56 Score=436.88 Aligned_cols=423 Identities=54% Similarity=0.953 Sum_probs=389.0
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhhc-cCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHH
Q psy10285 241 FPTHVDILIIGGGAIGSSIAYFIKEKV-LDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAE 319 (673)
Q Consensus 241 ~~~~~~v~iiG~G~~g~~~A~~l~~~~-~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~ 319 (673)
.+.+++|+|||||..|.++|++|.++. +.|.+|.++||+.. ..+.+|..+.|++.++|..+++.+++.++.+
T Consensus 83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt-------ytqssT~lSvGGi~QQFSlpEnIqmSLF~a~ 155 (509)
T KOG2853|consen 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT-------YTQSSTMLSVGGICQQFSLPENIQMSLFTAE 155 (509)
T ss_pred cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc-------ccccceeeeecceeeecccchhhhhhhHHHH
Confidence 457899999999999999999998543 45799999999998 7899999999999999999999999999999
Q ss_pred HHHHHHhhccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccC
Q psy10285 320 FLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLE 399 (673)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~ 399 (673)
|++...+++.++..+..+..|.++|++.++++++.+.++...+.+.+.|...++++++++.+++||++.+.+..++++.+
T Consensus 156 Flr~a~ehl~~~d~~~vdl~f~P~GyL~LA~ee~ae~m~s~~kvQ~e~GAk~eLls~d~Lt~rfPwlntegVaLa~lG~e 235 (509)
T KOG2853|consen 156 FLRNAREHLGILDSEQVDLNFFPTGYLRLASEEEAEMMRSNSKVQNELGAKVELLSPDELTKRFPWLNTEGVALASLGVE 235 (509)
T ss_pred HHHHHHHhhccccCCCCCcccCCCceEEEcchhhHHHHHHhHHHHHhhcchhcccCHHHHhhhCCcccccceeeeecccc
Confidence 99999999999999999999999999999998888999999999999999999999999999999999999999999999
Q ss_pred CceeeCHHHHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCC---CCccceeeEEEEcCCCCeeEEecCEEEEc
Q psy10285 400 KEGWFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDD---GEYHSVNECVVRDEKGELKTITFAICVIA 476 (673)
Q Consensus 400 ~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~---~~~~~v~gv~V~t~~G~~~~i~ad~VVlA 476 (673)
++||+||..++..+.+.+...|+.+..++|+.++.+..--+|+-+-+. .-+.++.++.|+.+++..+.++|+.+|+|
T Consensus 236 ~EGwfdpw~LLs~~rrk~~~lGv~f~~GeV~~Fef~sqr~v~~~tDd~t~~~~~~~i~~vvV~m~d~~~r~vk~al~V~a 315 (509)
T KOG2853|consen 236 KEGWFDPWALLSGIRRKAITLGVQFVKGEVVGFEFESQRAVHAFTDDGTAKLRAQRISGVVVRMNDALARPVKFALCVNA 315 (509)
T ss_pred cccccCHHHHHHHHHHHhhhhcceEecceEEEEEEecccceeeecccchhhhhhcccceeEEecCchhcCceeEEEEEec
Confidence 999999999999999999999999999999999876321233322222 24557889999988887789999999999
Q ss_pred CCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEcCCCceEEEecCCceEEecCCCCCCC
Q psy10285 477 AGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDTTGTYFRREGLGNYYICGKSPTPEQ 556 (673)
Q Consensus 477 tG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~i~G~~~~~~~ 556 (673)
+|+|+.+++++.|+..+ .+....++|+.|.|.|++.+.+|+.|+++.|+++|+.++|+|+.+.++.+++|.++....
T Consensus 316 AGa~s~QvArlAgIG~g---~g~L~vplPiepRKRyvyvi~~~~~PGl~~Pl~iDpsG~f~Rrdglg~nfl~grsp~ed~ 392 (509)
T KOG2853|consen 316 AGAWSGQVARLAGIGKG---PGLLAVPLPIEPRKRYVYVIFAPDVPGLDTPLTIDPSGVFFRRDGLGGNFLCGRSPSEDE 392 (509)
T ss_pred cCccHHHHHHHhccCCC---CceeeecccCCccceeEEEEeCCCCCCCCCceeECCCccEEEecCCCCceecccCCcccc
Confidence 99999999999998744 355558999999999999999999999999999999999999999999999999988888
Q ss_pred CCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCceeecCCCCCcEEEEEccCCccccchhHHH
Q psy10285 557 EPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIG 636 (673)
Q Consensus 557 ~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~~~G~~g~G~~~ap~~g 636 (673)
.++..+++++++.+.+.++.++..++|.+..+++.+.|+|+++..|-|..++||++|-+.|+|+++||+|||+.++|++|
T Consensus 393 ~~d~~nldVD~d~F~qkiwP~L~nRVP~fetakVqsaWaGyyD~NtfD~ngViG~HP~y~Nly~atGFsghGvqqs~avg 472 (509)
T KOG2853|consen 393 EPDHSNLDVDHDYFYQKIWPHLANRVPAFETAKVQSAWAGYYDHNTFDDNGVIGEHPLYTNLYMATGFSGHGVQQSPAVG 472 (509)
T ss_pred CCCccccccChHHHHhhhhHHHHhcccccceeeeeehhcccccccccccCCcccCCcceeeeeeeecccccchhcchHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCccCCccccccccccCccccccCCC
Q psy10285 637 RAVSELILDAEFKTIDLSRFLLERVARRQEAREVNIV 673 (673)
Q Consensus 637 ~~va~~i~~~~~~~~d~~~f~~~Rf~~~~~~~~~~~~ 673 (673)
+.+||+|++|....+|+++|+.+|+...++..|.+||
T Consensus 473 RAiaElIldG~f~tidLsrf~f~Rlv~~qpi~E~n~v 509 (509)
T KOG2853|consen 473 RAIAELILDGAFITIDLSRFDFRRLVKMQPITEPNIV 509 (509)
T ss_pred HHHHHHHhcCceeEEeccccchhHHhccCcccccccC
Confidence 9999999999998999999999999999999999997
No 2
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=100.00 E-value=1e-40 Score=365.07 Aligned_cols=371 Identities=20% Similarity=0.282 Sum_probs=292.7
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccC-C-CeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHH
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLD-G-CRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAE 319 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~-g-~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~ 319 (673)
...+||+|||||++|+++|++|+ +. | .+|+|+||... +.++|+.+.|.++..+..+....+...+.+
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~---~~~g~~~V~vle~~~~--------~~gas~~~~g~~~~~~~~~~~~~~~~~s~~ 96 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLA---KEHGITNVAVLEKGWL--------GGGNTGRNTTIVRSNYLYPESAELYEHAMK 96 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHH---HhcCCCeEEEEEcccc--------cCcccccccceeeecccCccccHHHHHHHH
Confidence 46789999999999999999999 64 7 49999999877 567788888888876665555677778888
Q ss_pred HHHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcc-----ccee
Q psy10285 320 FLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTD-----DIAL 393 (673)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~-----~~~~ 393 (673)
+|+++.+... .++.|..+|.+.++ ++++.+.+++..+.++..|++.++++++++++.+|.+..+ ...+
T Consensus 97 l~~~l~~~~~------~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~~~~~~~~~~g 170 (407)
T TIGR01373 97 LWEGLSQDLN------YNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVDAELLSPEQVRRVIPILDFSPDARFPVVG 170 (407)
T ss_pred HHHHHHHHhC------CCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCCeEEeCHHHHHHhCCCCccccccccceeE
Confidence 9998876554 67788999999998 7777778888888888899999999999999999988753 1334
Q ss_pred EEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCE
Q psy10285 394 ACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAI 472 (673)
Q Consensus 394 g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~ 472 (673)
+++ .+..+.++|..++..|.+.+++.|+++++ ++|++++..++ +++.+ |.|.+| ++.+++
T Consensus 171 a~~-~~~~g~v~p~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~-------------~~~~~--v~t~~g---~i~a~~ 231 (407)
T TIGR01373 171 GLL-QRRGGTARHDAVAWGYARGADRRGVDIIQNCEVTGFIRRDG-------------GRVIG--VETTRG---FIGAKK 231 (407)
T ss_pred EEE-cCCCCcCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-------------CcEEE--EEeCCc---eEECCE
Confidence 444 68889999999999999999999999996 59999976543 33333 778888 799999
Q ss_pred EEEcCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEcCCCceEEEecCCceEEecCCC
Q psy10285 473 CVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDTTGTYFRREGLGNYYICGKSP 552 (673)
Q Consensus 473 VVlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~i~G~~~ 552 (673)
||+|+|+|+..+.+++++ .+|+.+.+++++..+.. .+.....++......|++|.. ++.+++|.+.
T Consensus 232 vVvaagg~~~~l~~~~g~------------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~y~~p~~-~g~~~ig~~~ 297 (407)
T TIGR01373 232 VGVAVAGHSSVVAAMAGF------------RLPIESHPLQALVSEPL-KPIIDTVVMSNAVHFYVSQSD-KGELVIGGGI 297 (407)
T ss_pred EEECCChhhHHHHHHcCC------------CCCcCcccceEEEecCC-CCCcCCeEEeCCCceEEEEcC-CceEEEecCC
Confidence 999999999999887764 45677777776655422 222222233333567999985 4556655443
Q ss_pred CCCCCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCceeecCCCCCcEEEEEccCCccccch
Q psy10285 553 TPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQA 632 (673)
Q Consensus 553 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~~~G~~g~G~~~a 632 (673)
+...... ...+.+. .+.+++.+.++||.+.+.++.+.|+|+|++ |+|+.|+||++| .+|+|+++||+|||++++
T Consensus 298 ~~~~~~~---~~~~~~~-~~~l~~~~~~~~P~l~~~~~~~~w~G~~~~-t~D~~PiIg~~~-~~gl~~a~G~~g~G~~~a 371 (407)
T TIGR01373 298 DGYNSYA---QRGNLPT-LEHVLAAILEMFPILSRVRMLRSWGGIVDV-TPDGSPIIGKTP-LPNLYLNCGWGTGGFKAT 371 (407)
T ss_pred CCCCccC---cCCCHHH-HHHHHHHHHHhCCCcCCCCeEEEecccccc-CCCCCceeCCCC-CCCeEEEeccCCcchhhc
Confidence 2111100 1112233 478899999999999988999999999996 999999999998 489999999999999999
Q ss_pred hHHHHHHHHHHHcCCCCccCCccccccccccCccccc
Q psy10285 633 PAIGRAVSELILDAEFKTIDLSRFLLERVARRQEARE 669 (673)
Q Consensus 633 p~~g~~va~~i~~~~~~~~d~~~f~~~Rf~~~~~~~~ 669 (673)
|++|+++|++|.+++ +..+++.|+|+||.+++++.|
T Consensus 372 p~~G~~la~li~~~~-~~~~~~~f~~~Rf~~~~~~~~ 407 (407)
T TIGR01373 372 PASGTVFAHTLARGE-PHDINAPFTLDRFHSGRLIDE 407 (407)
T ss_pred hHHHHHHHHHHhCCC-CCCCCcccCHhHhccCCcccC
Confidence 999999999999887 445789999999999988776
No 3
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=100.00 E-value=5.5e-39 Score=352.59 Aligned_cols=357 Identities=21% Similarity=0.273 Sum_probs=272.9
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcc-----------------
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLR----------------- 308 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~----------------- 308 (673)
+|+|||||++|+++|++|+ +.|.+|+|+|+... .+.++|..+.|.+.+.+..+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~---~~g~~V~vle~~~~-------~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~~~~~ 71 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLA---QAGHEVTVIDRQPG-------PALETSFANAGQISPGYAAPWAAPGVPLKAIKWLFQR 71 (416)
T ss_pred EEEEECCcHHHHHHHHHHH---HCCCEEEEEeCCCc-------hhhhheeccCcccccccccccCCCchhhhhhhhccCC
Confidence 7999999999999999999 88999999999864 35677777777765543211
Q ss_pred -----------------------------------hhhHHHHHHHHHHHHHHhhccccCCCCCCcceeecCeEEEe-ccc
Q psy10285 309 -----------------------------------ENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQD 352 (673)
Q Consensus 309 -----------------------------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~ 352 (673)
....+...+.++|.++.+. .++++.|+..|.+.++ +++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~------~~~~~~~~~~G~l~~a~~~~ 145 (416)
T PRK00711 72 HAPLAIRPDGDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAE------TGIQYEGRQGGTLQLFRTQQ 145 (416)
T ss_pred CCCeEecCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hCCccccccCcEEEEECCHH
Confidence 1223344556666666543 3478888889999998 777
Q ss_pred hHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCc--ccceeEEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-ece
Q psy10285 353 GAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNT--DDIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEV 429 (673)
Q Consensus 353 ~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~--~~~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V 429 (673)
..+.+++..+.+++.|+++++++.+++.+.+|.+.. +.+..+++ .+.++++||..++..|.+.+++.|++|+. ++|
T Consensus 146 ~~~~l~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~ga~~-~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V 224 (416)
T PRK00711 146 QLDAAAKDIAVLEEAGVPYELLDRDELAAVEPALAGVRHKLVGGLR-LPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPV 224 (416)
T ss_pred HHHHHHHHHHHHHHcCCCceecCHHHHHHhCCCccCCCccceeEEE-CCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEE
Confidence 777888888888999999999999999999998752 34455555 78899999999999999999999999995 599
Q ss_pred eEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHHHHHHcCCCCCcccccccccccCccee
Q psy10285 430 VDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPR 509 (673)
Q Consensus 430 ~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~ 509 (673)
++++.+++ ++.+ |+++++ ++.||+||+|+|.|+..+++.+++ ++|+.|+
T Consensus 225 ~~i~~~~~--------------~~~~--v~t~~~---~~~a~~VV~a~G~~~~~l~~~~g~------------~~pi~p~ 273 (416)
T PRK00711 225 DGLLVEGG--------------RITG--VQTGGG---VITADAYVVALGSYSTALLKPLGV------------DIPVYPL 273 (416)
T ss_pred EEEEecCC--------------EEEE--EEeCCc---EEeCCEEEECCCcchHHHHHHhCC------------CcccCCc
Confidence 99987653 3333 667766 799999999999999999887663 5678888
Q ss_pred eeeEEEEeCCCCCCCCCCe--EEcCCCceEEEecCCceEEecCCCCCCCCCCCCCCCCChhHHHHhHHHHHhhhcccccc
Q psy10285 510 KRYVYCFESPRGPGVNTPM--VIDTTGTYFRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEE 587 (673)
Q Consensus 510 r~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~~~~g~~i~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~ 587 (673)
++|.+.++.+... ..|+ +.+....+..+.. ++.+++|......... ...+.+. .+.+.+.+.++||.+.+
T Consensus 274 rg~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~-~~~~~iG~~~~~~~~~----~~~~~~~-~~~l~~~~~~~~P~l~~ 345 (416)
T PRK00711 274 KGYSLTVPITDED--RAPVSTVLDETYKIAITRF-DDRIRVGGMAEIVGFD----LRLDPAR-RETLEMVVRDLFPGGGD 345 (416)
T ss_pred cceEEEEecCCCC--CCCceeEEecccCEEEeec-CCceEEEEEEEecCCC----CCCCHHH-HHHHHHHHHHHCCCccc
Confidence 9988766543221 1222 2333333344443 3455555433221111 1222333 37788889999999998
Q ss_pred ccccceeeeeccCCCCCCCceeecCCCCCcEEEEEccCCccccchhHHHHHHHHHHHcCCCCccCCcccccccc
Q psy10285 588 LKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDLSRFLLERV 661 (673)
Q Consensus 588 ~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~~~G~~g~G~~~ap~~g~~va~~i~~~~~~~~d~~~f~~~Rf 661 (673)
.++.+.|+|+|++ |+|+.|+||++| .+|+|+++||+||||+++|++|+.+|++|.+++ ++.|++.|+|+||
T Consensus 346 ~~~~~~w~G~r~~-t~D~~PiIG~~~-~~gl~~a~G~~g~G~~~ap~~g~~la~li~g~~-~~~~~~~f~~~Rf 416 (416)
T PRK00711 346 LSQATFWTGLRPM-TPDGTPIVGATR-YKNLWLNTGHGTLGWTMACGSGQLLADLISGRK-PAIDADDLSVARY 416 (416)
T ss_pred ccccceeeccCCC-CCCCCCEeCCcC-CCCEEEecCCchhhhhhhhhHHHHHHHHHcCCC-CCCCccccCccCC
Confidence 8999999999986 999999999987 489999999999999999999999999999887 5688999999998
No 4
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=100.00 E-value=3e-38 Score=342.63 Aligned_cols=367 Identities=20% Similarity=0.280 Sum_probs=278.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHHHH
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNI 324 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l 324 (673)
+||+|||||++|+++|++|+ +.|.+|+|+|+.... ...+++..+.+.+...+.......+...+.++|+++
T Consensus 1 ~dvvIIGaGi~G~s~A~~La---~~g~~V~l~e~~~~~------~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l 71 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLA---KHGKKTLLLEQFDLP------HSRGSSHGQSRIIRKAYPEDFYTPMMLECYQLWAQL 71 (380)
T ss_pred CcEEEECCCHHHHHHHHHHH---HCCCeEEEEeccCCC------CCCCCCCCCCeeeeeccCchhHhHHHHHHHHHHHHH
Confidence 48999999999999999999 789999999997651 123344444455555555555667888899999988
Q ss_pred HhhccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCceee
Q psy10285 325 KHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWF 404 (673)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g~i 404 (673)
.+... .++ +...|.+.+...+. +.+++..+.+++.+.+.++++++++.+++|.+..+....+++ .+.++++
T Consensus 72 ~~~~~------~~~-~~~~G~l~~~~~~~-~~~~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~~~~~~~~-~~~~g~i 142 (380)
T TIGR01377 72 EKEAG------TKL-HRQTGLLLLGPKEN-QFLKTIQATLSRHGLEHELLSSKQLKQRFPNIRVPRNEVGLL-DPNGGVL 142 (380)
T ss_pred HHHhC------Cee-EeecCeEEEcCCCc-HHHHHHHHHHHHcCCCeEEcCHHHHHHhCCCCcCCCCceEEE-cCCCcEE
Confidence 76543 444 45678888773222 566777777888999999999999999999887554445555 7899999
Q ss_pred CHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHH
Q psy10285 405 DPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQ 483 (673)
Q Consensus 405 ~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~ 483 (673)
+|..++..|.+.+++.|++++. ++|++++.+++ .+.|++.+| ++.||.||+|+|+|+..
T Consensus 143 ~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~-----------------~~~v~~~~~---~i~a~~vV~aaG~~~~~ 202 (380)
T TIGR01377 143 YAEKALRALQELAEAHGATVRDGTKVVEIEPTEL-----------------LVTVKTTKG---SYQANKLVVTAGAWTSK 202 (380)
T ss_pred cHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCC-----------------eEEEEeCCC---EEEeCEEEEecCcchHH
Confidence 9999999999999999999995 58999987653 455777776 79999999999999999
Q ss_pred HHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCC----CCCCeEEcC---CCceEEEecCC-ceEEecCCCCCC
Q psy10285 484 VARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPG----VNTPMVIDT---TGTYFRREGLG-NYYICGKSPTPE 555 (673)
Q Consensus 484 l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~----~~~~~~~~~---~~~y~~~~~~~-g~~i~G~~~~~~ 555 (673)
+++++++ .+|+.+.++++..+..+.... ...|+++.. ...|++|..++ +.++++......
T Consensus 203 l~~~~g~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~y~~p~~~~~~~~~~~~~~~~~ 270 (380)
T TIGR01377 203 LLSPLGI------------EIPLQPLRINVCYWREKEPGSYGVSQAFPCFLVLGLNPHIYGLPSFEYPGLMKVYYHHGQQ 270 (380)
T ss_pred Hhhhccc------------CCCceEEEEEEEEEecCCccccCccCCCCEEEEeCCCCceEecCCCCCCceEEEEeCCCCc
Confidence 9988764 467888999887776542211 134544322 35788887432 344544332211
Q ss_pred CCCCC--CCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCceeecCCCCCcEEEEEccCCccccchh
Q psy10285 556 QEPPV--DNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAP 633 (673)
Q Consensus 556 ~~~~~--~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~~~G~~g~G~~~ap 633 (673)
..+.. .....+... .+.+++.+.+++|.+.... ...|.|++++ |+|+.|+||++|..+|+|+++||+||||+++|
T Consensus 271 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~P~l~~~~-~~~~~~~~~~-t~D~~piIg~~p~~~~l~va~G~~g~G~~~~p 347 (380)
T TIGR01377 271 IDPDERDCPFGADIED-VQILRKFVRDHLPGLNGEP-KKGEVCMYTN-TPDEHFVIDLHPKYDNVVIGAGFSGHGFKLAP 347 (380)
T ss_pred cCcccccCCCCCCHHH-HHHHHHHHHHHCCCCCCCc-ceeeEEEecc-CCCCCeeeecCCCCCCEEEEecCCccceeccH
Confidence 11111 111233344 4888899999999998533 5679999986 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCccCCccccccccccCc
Q psy10285 634 AIGRAVSELILDAEFKTIDLSRFLLERVARRQ 665 (673)
Q Consensus 634 ~~g~~va~~i~~~~~~~~d~~~f~~~Rf~~~~ 665 (673)
++|+++|++|.+++ ++.|+++|+|+||.++.
T Consensus 348 ~~g~~la~li~~~~-~~~~~~~f~~~Rf~~~~ 378 (380)
T TIGR01377 348 VVGKILAELAMKLK-PSYDLAIFSLNRFALKK 378 (380)
T ss_pred HHHHHHHHHHhcCC-CCCCccccChhhcccCC
Confidence 99999999999988 56889999999998864
No 5
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=100.00 E-value=2.2e-37 Score=335.33 Aligned_cols=363 Identities=23% Similarity=0.301 Sum_probs=274.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccC-cchhhHHHHHHHHHHH
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFS-LRENIEMSLFGAEFLR 322 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~-~~~~~~~~~~~~~~~~ 322 (673)
.+||+|||||++|+++|++|+ +.|.+|+|+||+... ...+++..+.+.++..+. ......+...+.++|.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~---~~g~~V~lie~~~~~------~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~~~~~ 73 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLA---RRGLRVLGLDRFMPP------HQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQELWR 73 (376)
T ss_pred cccEEEECCCHHHHHHHHHHH---HCCCeEEEEecccCC------CCCcCcCCcceEEEeeccCCchhhHHHHHHHHHHH
Confidence 479999999999999999999 789999999998761 123444444455554443 2445678888999999
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCce
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEG 402 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g 402 (673)
++.+... .++ +..+|.+.+..+. .+.+++..+.+++.|++.++++++++.+++|.++......+++ .+.+|
T Consensus 74 ~l~~~~~------~~~-~~~~G~l~~~~~~-~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~P~l~~~~~~~a~~-~~~~g 144 (376)
T PRK11259 74 ELERESG------EPL-FVRTGVLNLGPAD-SDFLANSIRSARQHGLPHEVLDAAEIRRRFPQFRLPDGYIALF-EPDGG 144 (376)
T ss_pred HHHHHhC------Ccc-EEEECCEEEcCCC-CHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCCcCCCCceEEE-cCCCC
Confidence 8876544 444 6778888887222 3456667777888999999999999999999887554555666 68899
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
+++|.+++..+.+.+.+.|++++. ++|++++.+++ ++.|++++| +++||.||+|+|+|+
T Consensus 145 ~v~p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~-----------------~~~v~~~~g---~~~a~~vV~A~G~~~ 204 (376)
T PRK11259 145 FLRPELAIKAHLRLAREAGAELLFNEPVTAIEADGD-----------------GVTVTTADG---TYEAKKLVVSAGAWV 204 (376)
T ss_pred EEcHHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCC-----------------eEEEEeCCC---EEEeeEEEEecCcch
Confidence 999999999999999999999995 58999988653 566888887 799999999999999
Q ss_pred HHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCC--CCCCCeEEc---C-CCceEEEecCCceEEecCCCCCC
Q psy10285 482 GQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGP--GVNTPMVID---T-TGTYFRREGLGNYYICGKSPTPE 555 (673)
Q Consensus 482 ~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~--~~~~~~~~~---~-~~~y~~~~~~~g~~i~G~~~~~~ 555 (673)
..+++++ .+|+.+.+++++.++.+... ....|++.. . ...|++|..+++.+++|.+....
T Consensus 205 ~~l~~~~--------------~~~i~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~y~~p~~~~~~l~ig~~~~~~ 270 (376)
T PRK11259 205 KDLLPPL--------------ELPLTPVRQVLAWFQADGRYSEPNRFPAFIWEVPDGDQYYGFPAENGPGLKIGKHNGGQ 270 (376)
T ss_pred hhhcccc--------------cCCceEEEEEEEEEecCCccCCccCCCEEEEecCCCceeEeccCCCCCceEEEECCCCC
Confidence 9887642 45788999998887753211 112344321 1 23678888544415444433211
Q ss_pred --CCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCceeecCCCCCcEEEEEccCCccccchh
Q psy10285 556 --QEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAP 633 (673)
Q Consensus 556 --~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~~~G~~g~G~~~ap 633 (673)
..+...+...+.....+.+++.+.++||.+.. +...|.|+|++ |+|+.|+||++|..+|+|+++||+|||++++|
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~~~~--~~~~~~g~~~~-t~D~~P~ig~~~~~~gl~~~~G~~g~G~~~ap 347 (376)
T PRK11259 271 EITSPDERDRFVTVAEDGAELRPFLRNYLPGVGP--CLRGAACTYTN-TPDEHFIIDTLPGHPNVLVASGCSGHGFKFAS 347 (376)
T ss_pred CCCChhhccCCCCcHHHHHHHHHHHHHHCCCCCc--cccceEEeccc-CCCCCceeecCCCCCCEEEEecccchhhhccH
Confidence 11111111122234458889999999998876 78889999986 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCccCCccccccccc
Q psy10285 634 AIGRAVSELILDAEFKTIDLSRFLLERVA 662 (673)
Q Consensus 634 ~~g~~va~~i~~~~~~~~d~~~f~~~Rf~ 662 (673)
++|+.+|++|.+++ ++.|++.|+|+||.
T Consensus 348 ~~g~~la~li~~~~-~~~~~~~~~~~Rf~ 375 (376)
T PRK11259 348 VLGEILADLAQDGT-SDFDLSPFSLSRFA 375 (376)
T ss_pred HHHHHHHHHHhcCC-CCCCcCccCccccc
Confidence 99999999999888 56889999999996
No 6
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=100.00 E-value=4.3e-36 Score=332.86 Aligned_cols=368 Identities=17% Similarity=0.233 Sum_probs=262.9
Q ss_pred eeccCCCCc-ccccCCCCC-CCcccEEEECCcHHHHHHHHHHHhhccC--CCeEEEEecCCCCCCCcccccccccccccC
Q psy10285 224 LWRNVQDPE-SRYQGNTLF-PTHVDILIIGGGAIGSSIAYFIKEKVLD--GCRVAVVDRDFTVNYDLDEYARASTTLSVG 299 (673)
Q Consensus 224 ~~~~~~~~~-~~~~~~~l~-~~~~~v~iiG~G~~g~~~A~~l~~~~~~--g~~v~~ie~~~~~~~~~~~~~~~st~~~~g 299 (673)
||..+..+. ..+..+.|. ...+||+|||+|++|+++|++|+ +. |.+|+|+|+... +.++|+.+.|
T Consensus 2 ~w~~~~~~~~~~~~~~~L~~~~~~DVvIIGgGi~Gls~A~~La---~~~~G~~V~vlE~~~~--------g~GaSgrn~G 70 (460)
T TIGR03329 2 FWLEQALALEQPDPAPPLVGDTQADVCIVGGGFTGLWTAIMIK---QQRPALDVLVLEADLC--------GAGASGRNGG 70 (460)
T ss_pred CccccccccCCCCCCCCCCCCceeCEEEECCCHHHHHHHHHHH---HhCCCCeEEEEeCCcc--------ccccccccCc
Confidence 677663211 111233444 35689999999999999999999 55 899999999887 6678888888
Q ss_pred ceecc----------cCcchhhHHHHHHHHHHHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcC
Q psy10285 300 GLRQQ----------FSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELG 368 (673)
Q Consensus 300 ~i~~~----------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g 368 (673)
.+... +.......+...+.+.+..+.+. +++.+++|+|...|.++++ ++.+.+.+++..+.+++.|
T Consensus 71 ~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~l---~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G 147 (460)
T TIGR03329 71 CMLTWSTKFFTLKRLFGEAEAARLVKASEQAVLEIAAF---CEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRG 147 (460)
T ss_pred cccccccCHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH---HHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhC
Confidence 65421 11222333444444444443321 2235588999999999988 7777788888888888889
Q ss_pred Cc-ceeeCHhhHHhhCCCCCcccceeEEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCC
Q psy10285 369 AK-NVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYD 446 (673)
Q Consensus 369 ~~-~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~ 446 (673)
++ +++++++++.+.+|.. .+..+++ .+.++++||.+++..|.+.+++.|++|++ ++|++|+..+
T Consensus 148 ~~~~~~l~~~e~~~~~~~~---~~~~g~~-~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~~~---------- 213 (460)
T TIGR03329 148 INSWQRLSEGELARRTGSA---RHLEGFY-SPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEEGQ---------- 213 (460)
T ss_pred CCCeEEcCHHHHHHHhCCC---cceEEEE-eCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEeeCC----------
Confidence 86 5899999999988742 3345666 78999999999999999999999999996 5899997532
Q ss_pred CCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCC----
Q psy10285 447 DGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGP---- 522 (673)
Q Consensus 447 ~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~---- 522 (673)
.+.|+|++| ++.||+||+|+|+|+..+++.++. ++.|++++++.++.....
T Consensus 214 --------~~~v~t~~g---~v~A~~VV~Atga~s~~l~~~~~~--------------~~~p~~~~~~~t~pl~~~~~~~ 268 (460)
T TIGR03329 214 --------PAVVRTPDG---QVTADKVVLALNAWMASHFPQFER--------------SIAIVSSDMVITEPAPDLLAAT 268 (460)
T ss_pred --------ceEEEeCCc---EEECCEEEEcccccccccChhhcC--------------eEEEeccceEecCCCcHHHHhh
Confidence 355788888 799999999999999988775542 233455665544421100
Q ss_pred CCC-CCeEEcCC--CceEEEecCCceEEecCCCC-CC-CCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeee
Q psy10285 523 GVN-TPMVIDTT--GTYFRREGLGNYYICGKSPT-PE-QEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGY 597 (673)
Q Consensus 523 ~~~-~~~~~~~~--~~y~~~~~~~g~~i~G~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~ 597 (673)
... ...+.+.. ..|+++.. ++.+++|.... .. ......... ......+.+.+.+.++||.|.+.++.+.|+|+
T Consensus 269 ~~~~~~~~~d~~~~~~y~r~~~-dgrll~G~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~fP~L~~~~i~~~W~G~ 346 (460)
T TIGR03329 269 GLDHGTSVLDSRIFVHYYRSTP-DGRLMLGKGGNTFAYGGRMLPVFN-QPSPYEALLTRSLRKFFPALAEVPIAASWNGP 346 (460)
T ss_pred cCCCCceEecchhhhhheeECC-CCcEEEcCCccccccCcccccccC-CchHHHHHHHHHHHHhCCCcCCCeeeEEEece
Confidence 011 11233432 25899986 45565553221 11 110000011 11233467888899999999999999999999
Q ss_pred ccCCCCCCCceeecCCCCCcEEEEEccCCccccchhHHHHHHHHHHHcCC
Q psy10285 598 YDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAE 647 (673)
Q Consensus 598 ~~~~t~d~~Piig~~~~~~~l~~~~G~~g~G~~~ap~~g~~va~~i~~~~ 647 (673)
+++ |+|+.|+||++|..+|+|+++||+|||+++++++|+++|++|+++.
T Consensus 347 ~~~-t~D~~P~iG~~~~~~gl~~a~G~~G~Gv~~a~~~G~~lA~li~g~~ 395 (460)
T TIGR03329 347 SDR-SVTGLPFFGRLNGQPNVFYGFGYSGNGVAPSRMGGQILSSLVLGLD 395 (460)
T ss_pred eCC-CCCCCceeeeecCCCCEEEEeCcCCCChhHHHHHHHHHHHHhcCCC
Confidence 986 9999999999988899999999999999999999999999999865
No 7
>KOG2844|consensus
Probab=100.00 E-value=6.3e-35 Score=310.63 Aligned_cols=376 Identities=23% Similarity=0.358 Sum_probs=303.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEE-EEecCCCCCCCcccccccccccccCceecccCcchhhH-HHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVA-VVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIE-MSLFGAEF 320 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~-~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~-~~~~~~~~ 320 (673)
...+|+|||+|..|+++|++|+ +.|.++. ++|+... ..++|+..+|.++..+..+...+ +.......
T Consensus 38 ~~A~vvViggG~~g~~~~yhla---k~g~k~avlle~~~l--------tsgttwhtagl~~~lr~~dv~~qlia~~~~~l 106 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLA---KRGMKGAVLLERSRL--------TSGTTWHTAGLLWQLFPSDVELQLIAHTSRVL 106 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHH---HccccceEEEeeeee--------ccccccccccceeeccCCchhHHHHHHHHHHH
Confidence 5589999999999999999999 8899854 4555555 88999999998887444443333 33344455
Q ss_pred HHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccC
Q psy10285 321 LRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLE 399 (673)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~ 399 (673)
++++..+. +....|.++|.++++ +....+.+++.+..-..+|.+.+++++++.++++|.++.+++.++.| .|
T Consensus 107 ~~~leeEt------gl~tGwiq~G~~~lAs~~~R~de~kR~~S~g~a~g~e~~lLsPee~~~~~pLLn~d~v~g~Ly-~P 179 (856)
T KOG2844|consen 107 YRELEEET------GLHTGWIQNGGIFLASNRQRLDEYKRLMSRGKAHGVESELLSPEETQELFPLLNVDDVYGGLY-SP 179 (856)
T ss_pred HHHHHHhc------CCCcceecCCceEEecCHHHHHHHHHHHHhhhhccceeeecCHHHHHHhCcccchhHheeeee-cC
Confidence 56665544 477889999999999 88888888888888889999999999999999999999999888877 89
Q ss_pred CceeeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCC
Q psy10285 400 KEGWFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAG 478 (673)
Q Consensus 400 ~~g~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG 478 (673)
.+|.+||..++++|+..+++.|+.|+++ .|++|....+ +..+ |+|..| .|++.+||+|||
T Consensus 180 ~DG~~DP~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~--------------~~~g--VeT~~G---~iet~~~VNaaG 240 (856)
T KOG2844|consen 180 GDGVMDPAGLCQALARAASALGALVIENCPVTGLHVETD--------------KFGG--VETPHG---SIETECVVNAAG 240 (856)
T ss_pred CCcccCHHHHHHHHHHHHHhcCcEEEecCCcceEEeecC--------------Cccc--eeccCc---ceecceEEechh
Confidence 9999999999999999999999999964 9999987663 2225 999999 899999999999
Q ss_pred CCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeC-CCCCCCCCCeEEcC-CCceEEEecCCceEEecCCCCCCC
Q psy10285 479 AYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFES-PRGPGVNTPMVIDT-TGTYFRREGLGNYYICGKSPTPEQ 556 (673)
Q Consensus 479 ~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~-~~~~~~~~~~~~~~-~~~y~~~~~~~g~~i~G~~~~~~~ 556 (673)
.|+..+-.+.++ +.|+.|+.++.++.+. +.......|++.|. ..+|+|.+. ++.+.+|+.....-
T Consensus 241 vWAr~Vg~m~gv------------kvPL~p~~H~YvvT~~IeGi~s~t~p~irD~DgSvylR~~~-~gil~GGyE~n~i~ 307 (856)
T KOG2844|consen 241 VWAREVGAMAGV------------KVPLVPMHHAYVVTSRIEGVSSLTRPNIRDLDGSVYLRQQG-DGILFGGYESNPIF 307 (856)
T ss_pred HHHHHhhhhcCC------------cccceeeeeeEEEecccCCccCCCccceecccceEEEEecC-CceeccccccCcee
Confidence 999999877664 5678888886666553 22222233566665 568999995 67778887655321
Q ss_pred ----CCCC--CCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCceeecCCCCCcEEEEEccCCcccc
Q psy10285 557 ----EPPV--DNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQ 630 (673)
Q Consensus 557 ----~~~~--~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~~~G~~g~G~~ 630 (673)
.+.. ...+.+.+.+ +..+..+.++.|.+++..+.+..+|...+ |||.+|++|+.|...|.|+++|+++.|+.
T Consensus 308 ~egv~~~~~~~lqE~DWd~F-~~hlesai~r~P~l~k~~i~~~v~gpe~f-tPD~~p~mGe~p~~~gy~v~~G~ns~G~~ 385 (856)
T KOG2844|consen 308 TEGVPPGFATGLQEPDWDHF-EPHLEAAIERVPVLEKAGIKSLVNGPETF-TPDHLPIMGESPEVRGYWVACGFNSAGLS 385 (856)
T ss_pred ccccCCccccccccccHhhh-HHHHHHHHHhCchhhhcCccceecCcccc-CCccccccCCCccccceEEeecCCcccee
Confidence 1110 0122455666 77788888999999999999999999876 99999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHcCCCCccCCcccccccccc----CccccccC
Q psy10285 631 QAPAIGRAVSELILDAEFKTIDLSRFLLERVAR----RQEAREVN 671 (673)
Q Consensus 631 ~ap~~g~~va~~i~~~~~~~~d~~~f~~~Rf~~----~~~~~~~~ 671 (673)
++-++|+.++++|..++ ++.|+..|++.||.. +.+++|.+
T Consensus 386 ~~GG~Gk~la~wi~~g~-p~~d~~~~D~~Rf~~~~~~~~~lr~r~ 429 (856)
T KOG2844|consen 386 FGGGCGKYLAEWIIHGQ-PPLDVHELDLRRFGKLQTNRYFLRERA 429 (856)
T ss_pred ccCchhHHHHHHhhcCC-CCccchhccHHHhhhhhcccHHHhhhc
Confidence 99999999999999999 579999999999987 55666643
No 8
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=100.00 E-value=3.4e-34 Score=313.93 Aligned_cols=348 Identities=18% Similarity=0.208 Sum_probs=256.4
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCc-----------------
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSL----------------- 307 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~----------------- 307 (673)
+||+|||||++|+++|++|+ +.|.+|+|+||... .+.++++.++|.+......
T Consensus 2 ~~vvIIGaG~~G~~~A~~La---~~g~~V~vle~~~~-------~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALA---QRGYQVTVFDRHRY-------AAMETSFANGGQLSASNAEVWNHWATVLKGLKWMLR 71 (410)
T ss_pred CEEEEECCCHHHHHHHHHHH---HCCCeEEEEeCCCC-------CCcCcccccCCEEeecccccccChHHHHhhhHHhcC
Confidence 58999999999999999999 78999999999974 2567777777776542110
Q ss_pred ---------------------------------chhhHHHHHHHHHHHHHHhhccccCCCCCCcceeecCeEEEe-ccch
Q psy10285 308 ---------------------------------RENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDG 353 (673)
Q Consensus 308 ---------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~ 353 (673)
....++...+.++|+++.+.. ++++.|..+|.++++ +++.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~------~~~~~~~~~G~l~~a~~~~~ 145 (410)
T PRK12409 72 KDAPLLLNPKPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAERE------GIDFDLERRGILHIYHDKAG 145 (410)
T ss_pred CCCCeEecCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh------CCcceeecCcEEEEECCHHH
Confidence 011234455556666665443 478888899999998 7777
Q ss_pred HHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEE
Q psy10285 354 AATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDF 432 (673)
Q Consensus 354 ~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i 432 (673)
.+.+++..+.++..+++.++++++++++++|.+... +..+++ .+.++++++..++..|.+.+++.|+++++ ++|+++
T Consensus 146 ~~~l~~~~~~~~~~g~~~~~l~~~e~~~~~P~l~~~-~~ga~~-~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i 223 (410)
T PRK12409 146 FDHAKRVNALLAEGGLERRAVTPEEMRAIEPTLTGE-YYGGYY-TPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSI 223 (410)
T ss_pred HHhccHHHHHHHhcCCCeEEcCHHHHHHhCCCCccc-cceEEE-cCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEE
Confidence 777888888888889999999999999999987643 444555 78889999999999999999999999996 599999
Q ss_pred EecCCccccccCCCCCCccceeeEEEEcCCCC---eeEEecCEEEEcCCCCcHHHHHHcCCCCCcccccccccccCccee
Q psy10285 433 LRRRNNQVHYEGYDDGEYHSVNECVVRDEKGE---LKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPR 509 (673)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~---~~~i~ad~VVlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~ 509 (673)
+.+++ ++.+.+.++. ..+++||+||+|+|.|+..++++++. .+|+.|+
T Consensus 224 ~~~~~-----------------~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~l~~~~~~------------~~~i~p~ 274 (410)
T PRK12409 224 KTDGG-----------------GVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRALAAMLGD------------RVNVYPV 274 (410)
T ss_pred EEeCC-----------------EEEEEEEcCCCCccceEecCEEEECCCcChHHHHHHhCC------------CCccccC
Confidence 87653 3334332221 13689999999999999999887663 4678888
Q ss_pred eeeEEEEeCCCCC-CCCCCeE-EcCCCceEEEec-CCceEEecCCCCCCCCCCCCCCCCChhHHHHhHHHHHhhhccccc
Q psy10285 510 KRYVYCFESPRGP-GVNTPMV-IDTTGTYFRREG-LGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFE 586 (673)
Q Consensus 510 r~~~~~~~~~~~~-~~~~~~~-~~~~~~y~~~~~-~~g~~i~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~ 586 (673)
+++.+.++.++.. ....|.+ ......|+.+.. ..+.+++|.+.+..... ...+.+. .+.+++.+.++||.+.
T Consensus 275 ~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~igg~~~~~~~~----~~~~~~~-~~~l~~~~~~~~P~l~ 349 (410)
T PRK12409 275 KGYSITVNLDDEASRAAAPWVSLLDDSAKIVTSRLGADRFRVAGTAEFNGYN----RDIRADR-IRPLVDWVRRNFPDVS 349 (410)
T ss_pred CceEEEeecCCccccccCCceeeeecCCcEEEEecCCCcEEEEEEEEecCCC----CCCCHHH-HHHHHHHHHHhCCCCC
Confidence 9988776643211 1123322 112233443321 23345444333322111 1222333 4888899999999998
Q ss_pred cccccceeeeeccCCCCCCCceeecCCCCCcEEEEEccCCccccchhHHHHHHHHHHHcCC
Q psy10285 587 ELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAE 647 (673)
Q Consensus 587 ~~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~~~G~~g~G~~~ap~~g~~va~~i~~~~ 647 (673)
+..+. .|+|+|++ |+|+.|+||+.+ .+|+|+++||+|+|+++||++|+.+|++|.++.
T Consensus 350 ~~~~~-~w~G~r~~-t~D~~PiiG~~~-~~~l~~~~G~~~~G~~~ap~~g~~lA~~i~~~~ 407 (410)
T PRK12409 350 TRRVV-PWAGLRPM-MPNMMPRVGRGR-RPGVFYNTGHGHLGWTLSAATADLVAQVVAQKL 407 (410)
T ss_pred ccccc-eecccCCC-CCCCCCeeCCCC-CCCEEEecCCcccchhhcccHHHHHHHHHcCCC
Confidence 87766 79999986 999999999976 689999999999999999999999999999776
No 9
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=100.00 E-value=5e-35 Score=337.82 Aligned_cols=361 Identities=16% Similarity=0.152 Sum_probs=269.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcc--hhhHHHH----HH
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLR--ENIEMSL----FG 317 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~--~~~~~~~----~~ 317 (673)
.+||+|||||++|+++|++|+ +.|.+|+|+|+... .+.++|+.+.|.+.+.+... ...++.. .+
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La---~~G~~V~VlE~~~~-------~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a~~~a 329 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALA---RRGWQVTLYEADEA-------PAQGASGNRQGALYPLLSKDDNALSRFFRAAFLFA 329 (662)
T ss_pred CCCEEEECccHHHHHHHHHHH---HCCCeEEEEecCCC-------ccccCCcCcccccccccCCCCCHHHHHHHHHHHHH
Confidence 479999999999999999999 88999999999864 36778888888887765432 2223322 45
Q ss_pred HHHHHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEe
Q psy10285 318 AEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACL 396 (673)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~ 396 (673)
.++|+.+. . .+.++.+..+|.+.++ +++..+.+++..+.... +...++++.+++.+..|.. ....+++
T Consensus 330 ~~~~~~l~-~------~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~-~~~~~~l~~~e~~~~~~~~---~~~~g~~ 398 (662)
T PRK01747 330 RRFYDALP-A------AGVAFDHDWCGVLQLAWDEKSAEKIAKMLALGLP-AELARALDAEEAEELAGLP---VPCGGIF 398 (662)
T ss_pred HHHHHHHH-h------cCCCCCCCCCceEEeecCchHHHHHHHHHhccCc-hHhhhhCCHHHHHHHhCCC---CCCCcEE
Confidence 56676654 2 2356667788999888 66655556555543322 2346788998888877632 2334555
Q ss_pred ccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEE
Q psy10285 397 GLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVI 475 (673)
Q Consensus 397 ~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVl 475 (673)
.+.+|+++|..++..|.+.+++ |++++. ++|+++...++ ++.|.+.+| ..++||.||+
T Consensus 399 -~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~-----------------~~~v~t~~g--~~~~ad~VV~ 457 (662)
T PRK01747 399 -YPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDD-----------------GWQLDFAGG--TLASAPVVVL 457 (662)
T ss_pred -eCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCC-----------------EEEEEECCC--cEEECCEEEE
Confidence 7899999999999999999999 999985 58999987664 566888887 3578999999
Q ss_pred cCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEcCCCceEEE-ecCCceEEecCCCCC
Q psy10285 476 AAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDTTGTYFRR-EGLGNYYICGKSPTP 554 (673)
Q Consensus 476 AtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-~~~~g~~i~G~~~~~ 554 (673)
|+|.|+..+++. ..+|+.++|||++.++.+.......+++. ...|++| .. ++.+++|.+.+.
T Consensus 458 A~G~~s~~l~~~--------------~~lpl~p~RGqv~~~~~~~~~~~~~~~~~--~~~Y~~p~~~-~g~~~iGat~~~ 520 (662)
T PRK01747 458 ANGHDAARFAQT--------------AHLPLYSVRGQVSHLPTTPALSALKQVLC--YDGYLTPQPA-NGTHCIGASYDR 520 (662)
T ss_pred CCCCCccccccc--------------cCCCcccccceEEeecCCccccccCceeE--CCceeCCCCC-CCceEeCcccCC
Confidence 999999887642 25789999999988765321111122332 2469999 64 566777766553
Q ss_pred CCCCCCCCCCCChhHHHHhHHHHHhhhcccc-----ccccccceeeeeccCCCCCCCceeec------------------
Q psy10285 555 EQEPPVDNLDVDYEYFNENVWPHLAHRVKAF-----EELKVSNAWAGYYDFNYFDENAIIGL------------------ 611 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l-----~~~~i~~~w~G~~~~~t~d~~Piig~------------------ 611 (673)
.... ..++.+.. +.+++.+.+++|.+ .+.++...|+|+|++ |+|+.|+||+
T Consensus 521 ~~~~----~~~~~~~~-~~~~~~l~~~~P~l~~~~~~~~~~~~~~aG~R~~-tpD~~PiIG~~~~~~~~~~~y~~l~~~~ 594 (662)
T PRK01747 521 DDTD----TAFREADH-QENLERLAECLPQALWAKEVDVSALQGRVGFRCA-SRDRLPMVGNVPDEAATLAEYAALANQQ 594 (662)
T ss_pred CCCC----CCCCHHHH-HHHHHHHHHhCCCchhhhccCccccCceEEEecc-CCCcccccCCCCCHHHHHHHHHhhhhcc
Confidence 3211 12233444 67788899999976 466788999999986 9999999999
Q ss_pred ----CCCCCcEEEEEccCCccccchhHHHHHHHHHHHcCCCCccC---CccccccccccCcccccc
Q psy10285 612 ----HPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTID---LSRFLLERVARRQEAREV 670 (673)
Q Consensus 612 ----~~~~~~l~~~~G~~g~G~~~ap~~g~~va~~i~~~~~~~~d---~~~f~~~Rf~~~~~~~~~ 670 (673)
+|..+|+|+++||+|+||++||++|+++|++|+++.. +++ ++.|+|+||..+++.+..
T Consensus 595 ~~~~~~~~~gl~v~~G~gs~Gl~~ap~~a~~lA~li~g~~~-p~~~~~~~~~~p~Rf~~r~l~~~~ 659 (662)
T PRK01747 595 PARDAPRLPGLYVAGALGSRGLCSAPLGAELLASQIEGEPL-PLERDLLAALHPNRFWVRKLLKGK 659 (662)
T ss_pred ccccCCCCCCeEEEecccccHHHHHHHHHHHHHHHHhCCCC-CCCHHHHHhhChHHHHHHHHhcCC
Confidence 5667899999999999999999999999999997763 343 578999999999988765
No 10
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=100.00 E-value=5.6e-34 Score=309.84 Aligned_cols=369 Identities=27% Similarity=0.404 Sum_probs=277.9
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcc----hhhHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLR----ENIEMSLFGA 318 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~----~~~~~~~~~~ 318 (673)
..+||+|||+|++|+++|++|+ +.|.+|+++|+... +.++++.+.+++...+... ....+...+.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La---~~G~~V~vie~~~~--------~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLA---ERGADVTVLEAGEA--------GGGAAGRNAGGILAPWASPGGELEVRPLADLSL 71 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHH---HcCCEEEEEecCcc--------CCcchhcchhhhccccccCCccchhhhhhHHHH
Confidence 5689999999999999999999 88999999999998 3477777777776655542 3455677788
Q ss_pred HHHHHHHhhccccCCCCCCcceeecCeEEEe-ccc--hHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEE
Q psy10285 319 EFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQD--GAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALAC 395 (673)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~--~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~ 395 (673)
.+|+.+..... ....+...+.+.+. ... ......+..+..+......+.++..+..+..|.+..+.+..+.
T Consensus 72 ~~~~~~~~~~~------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~~~~~~~a~ 145 (387)
T COG0665 72 ALWRELSEELG------TGAGLRRRGLLDLAAREGLKGLAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGGL 145 (387)
T ss_pred HHHHHHHHHhC------cchhcchhhhhhhhhccccchHHHHHHHHHHHHhcCCCceeCCHHHHHHhCCCCCcccceeeE
Confidence 88888877655 23345666666665 332 2334445555555555555788999999999988877655555
Q ss_pred eccCCceeeCHHHHHHHHHHHHHHcCCeEE-E-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEE
Q psy10285 396 LGLEKEGWFDPWLYLNAVKKKAISLGAEYV-R-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAIC 473 (673)
Q Consensus 396 ~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~-~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~V 473 (673)
+ .+..++++|..++..|.+.+++.|+.++ . ++|..+..... .+.|.|.+| ++.||+|
T Consensus 146 ~-~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~-----------------~~~v~t~~g---~i~a~~v 204 (387)
T COG0665 146 F-DPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDGR-----------------VVGVETDGG---TIEADKV 204 (387)
T ss_pred e-cCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecCc-----------------EEEEEeCCc---cEEeCEE
Confidence 5 7999999999999999999999996655 3 48888876411 466999999 6999999
Q ss_pred EEcCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCC----CCeEEcCCCceEEEecCCceEEec
Q psy10285 474 VIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVN----TPMVIDTTGTYFRREGLGNYYICG 549 (673)
Q Consensus 474 VlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~----~~~~~~~~~~y~~~~~~~g~~i~G 549 (673)
|+|+|+|+..++...+ . ..+|+.|.+++++.++.+...... ..........|++|.. ++.+++|
T Consensus 205 v~a~G~~~~~l~~~~~-~----------~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~-~g~~~~g 272 (387)
T COG0665 205 VLAAGAWAGELAATLG-E----------LPLPLRPVRGQALTTEPPEGLLADGLAPVVLVVDDGGGYIRPRG-DGRLRVG 272 (387)
T ss_pred EEcCchHHHHHHHhcC-C----------CcCccccccceEEEecCCCccccccccceEEEecCCceEEEEcC-CCcEEEe
Confidence 9999999999998876 1 467899999999988865322111 1233444678999984 5666555
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCceeec-CCCCCcEEEEEccCCcc
Q psy10285 550 KSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGL-HPSYHNIHFATGFSGHG 628 (673)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~-~~~~~~l~~~~G~~g~G 628 (673)
.+.+.......+.... +....+++..+.+++|.+.+..+...|+|+|+++++|+.|+||+ .| .+|+|+++||+++|
T Consensus 273 ~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~P~l~~~~~~~~w~g~~~~t~pd~~P~iG~~~~-~~~l~~a~G~~~~G 349 (387)
T COG0665 273 GTDEEGGDDPSDPERE--DLVIAELLRVARALLPGLADAGIEAAWAGLRPPTTPDGLPVIGRAAP-LPNLYVATGHGGHG 349 (387)
T ss_pred ecccccCCCCccccCc--chhHHHHHHHHHHhCccccccccceeeeccccCCCCCCCceeCCCCC-CCCEEEEecCCCcC
Confidence 5444332111111111 11236888999999999999999999999999744999999995 77 89999999999999
Q ss_pred ccchhHHHHHHHHHHHcCCCCccCCccccccccccCc
Q psy10285 629 IQQAPAIGRAVSELILDAEFKTIDLSRFLLERVARRQ 665 (673)
Q Consensus 629 ~~~ap~~g~~va~~i~~~~~~~~d~~~f~~~Rf~~~~ 665 (673)
++++|++|+++|++|.+++ +..+...|.+.||...+
T Consensus 350 ~~~~p~~g~~lA~li~g~~-~~~~~~~~~~~~f~~~~ 385 (387)
T COG0665 350 FTLAPALGRLLADLILGGE-PELDLRPLLLDRFAPGR 385 (387)
T ss_pred hhhccHHHHHHHHHHcCCC-CCCCccccccccccccc
Confidence 9999999999999999888 45667788888865443
No 11
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=100.00 E-value=9.4e-35 Score=311.45 Aligned_cols=341 Identities=29% Similarity=0.458 Sum_probs=272.5
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecc---cCcchhhHHHHHHHHHHH
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQ---FSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~---~~~~~~~~~~~~~~~~~~ 322 (673)
||+|||+|++|+++|++|+ +.|.+|+|+|+... +.++|..+.|.++.. .......++...+.++|+
T Consensus 1 DvvIIGaGi~G~~~A~~La---~~G~~V~l~e~~~~--------~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~ 69 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELA---RRGHSVTLLERGDI--------GSGASGRSGGLVRPGISSYPDPQYARLARESVEFWR 69 (358)
T ss_dssp EEEEECTSHHHHHHHHHHH---HTTSEEEEEESSST--------TSSGGGSSSEEEECSGSHHSSHHHHHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHH---HCCCeEEEEeeccc--------cccccccccccccccccccccccccchhhhhccchh
Confidence 7999999999999999999 89999999999955 667888888888776 445567788899999999
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCc
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKE 401 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~ 401 (673)
++..... ..+.+...|.+.+. .+...+.+++..+.++..+.++++++.+++.+.+|.+. +....+++ .+.+
T Consensus 70 ~~~~~~~------~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~-~~~~ 141 (358)
T PF01266_consen 70 ELAEEYG------IPVGFRPCGSLYLAEDEEDAESLERLLDRLRRNGIPYELLSPEELRELFPFLN-PRIEGGVF-FPEG 141 (358)
T ss_dssp HHHHHTT------SSCEEEECEEEEEESSHHHHHHHHHHHHHHHHTTTTEEEEEHHHHHHHSTTSS-TTTEEEEE-ETTE
T ss_pred hhhhhcC------cccccccccccccccchhhhhhccccccccccccccccccchhhhhhhhcccc-cchhhhhc-cccc
Confidence 9866554 67778888999998 77777888888999999999999999999999999888 44555666 7899
Q ss_pred eeeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 402 GWFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 402 g~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
++++|.++++.|.+.+++.|+++++. +|++|..+++ ++.+ |+|.+| .++||.||+|+|.|
T Consensus 142 g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~--------------~v~g--v~~~~g---~i~ad~vV~a~G~~ 202 (358)
T PF01266_consen 142 GVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGG--------------RVTG--VRTSDG---EIRADRVVLAAGAW 202 (358)
T ss_dssp EEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETT--------------EEEE--EEETTE---EEEECEEEE--GGG
T ss_pred ccccccchhhhhHHHHHHhhhhccccccccchhhccc--------------cccc--cccccc---ccccceeEeccccc
Confidence 99999999999999999999999976 9999999874 3444 899998 69999999999999
Q ss_pred cHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEE------cCCCceEEEecCCceEEecCCCCC
Q psy10285 481 SGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVI------DTTGTYFRREGLGNYYICGKSPTP 554 (673)
Q Consensus 481 s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~------~~~~~y~~~~~~~g~~i~G~~~~~ 554 (673)
+..|++.++. .+|+.+.+++++.++...... ..++.. +....|++|.. +.+++|.....
T Consensus 203 s~~l~~~~~~------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~p~~--g~~~ig~~~~~ 267 (358)
T PF01266_consen 203 SPQLLPLLGL------------DLPLRPVRGQVLVLEPPESPL-APAILFPPVIFGPSDGVYIRPRP--GGVLIGTADGN 267 (358)
T ss_dssp HHHHHHTTTT------------SSTEEEEEEEEEEEEGCCSGS-SSEEEEEEECESSCTEEEEEEET--TEEEEEESECE
T ss_pred ceeeeecccc------------cccccccceEEEEEccCCccc-ccccccccccccccccceecccc--ccccccccccc
Confidence 9999988764 347899999999888643322 122211 11357888885 45555522211
Q ss_pred -CCCCCCCC-----CCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCceeecCCCCCcEEEEEccCCcc
Q psy10285 555 -EQEPPVDN-----LDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHG 628 (673)
Q Consensus 555 -~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~~~G~~g~G 628 (673)
...+.... .+.+.+ .+++++.+.+++|.+.+.++.+.|+|+|++ ++|+.|+|+++|..+|+|+++|++|+|
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~p~l~~~~v~~~~~g~r~~-t~d~~p~ig~~~~~~~l~~~~g~~~~G 344 (358)
T PF01266_consen 268 YDPGPSPEDSSGEDPDVDEE--IDELLERLARLLPGLGDAEVVRSWAGIRPF-TPDGRPIIGELPGSPNLYLAGGHGGHG 344 (358)
T ss_dssp EEESSSHHHHSHHHHHHHHH--HHHHHHHHHHHSGGGGGSEEEEEEEEEEEE-ETTSECEEEEESSEEEEEEEECETTCH
T ss_pred ccccccccccccccccccHH--HHHhHHHHHHHHHHhhhccccccccceeee-ccCCCeeeeecCCCCCEEEEECCCchH
Confidence 11111100 011112 368999999999999999999999999996 999999999999999999999999999
Q ss_pred ccchhHHHHHHHHH
Q psy10285 629 IQQAPAIGRAVSEL 642 (673)
Q Consensus 629 ~~~ap~~g~~va~~ 642 (673)
|+++|++|+.+|++
T Consensus 345 ~~~a~~~a~~~a~~ 358 (358)
T PF01266_consen 345 FTLAPGLAELLADL 358 (358)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999999986
No 12
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=100.00 E-value=4.7e-33 Score=296.65 Aligned_cols=329 Identities=23% Similarity=0.312 Sum_probs=260.3
Q ss_pred HHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceeccc----CcchhhHHHHHHHHHHHHHHhhccccCCCCC
Q psy10285 261 YFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQF----SLRENIEMSLFGAEFLRNIKHHCHVIGEDEP 336 (673)
Q Consensus 261 ~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 336 (673)
++|+ +.|.+|+|+|+... +.++|+.+.|.+.+.. .......+...+.++|+.+.+... ...++
T Consensus 1 ~~La---~~G~~V~vle~~~~--------~~gaS~~~~g~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~--~~~~~ 67 (337)
T TIGR02352 1 WELA---KRGHSVTLFDRDPM--------GGGASWAAAGMLAPHAECEYAEDPLFDLALESLRLYPEWLEALK--ELTGL 67 (337)
T ss_pred ChHH---HCCCceEEEcCCCC--------CcccchhhhcCcccccccccCCchHHHHHHHHHHHHHHHHHHHH--HhcCC
Confidence 3677 67999999999877 6788888888886543 334566778888899988776542 12246
Q ss_pred CcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCceeeCHHHHHHHHHH
Q psy10285 337 DVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKK 415 (673)
Q Consensus 337 ~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g~i~~~~~~~~l~~ 415 (673)
++.|..+|.++++ ++...+.+++..+..+..+.+.++++++++++.+|.+.. ....+++ .+.+|+++|..++..|.+
T Consensus 68 ~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~~~~~~~l~~~e~~~~~p~l~~-~~~~g~~-~~~~g~v~p~~l~~~l~~ 145 (337)
T TIGR02352 68 DTGYHQCGTLVVAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLSG-GIRGAVF-YPDDAHVDPRALLKALEK 145 (337)
T ss_pred CcCeEEccEEEEeCCHHHHHHHHHHHHHHHhcCCceEEcCHHHHHHhCCCCCc-ccceEEE-cCCCceEChHHHHHHHHH
Confidence 7888899999988 778888888888888889999999999999999998764 3455666 788999999999999999
Q ss_pred HHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHHHHHHcCCCCCc
Q psy10285 416 KAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQVARMLKIGDKN 494 (673)
Q Consensus 416 ~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~l~~~~g~~~~~ 494 (673)
.+++.|++++. ++|++|..++ +.+.+ |.+.+| +++||.||+|+|+|+..|++
T Consensus 146 ~~~~~g~~~~~~~~v~~i~~~~--------------~~~~~--v~~~~g---~~~a~~vV~a~G~~~~~l~~-------- 198 (337)
T TIGR02352 146 ALEKLGVEIIEHTEVQHIEIRG--------------EKVTA--IVTPSG---DVQADQVVLAAGAWAGELLP-------- 198 (337)
T ss_pred HHHHcCCEEEccceEEEEEeeC--------------CEEEE--EEcCCC---EEECCEEEEcCChhhhhccc--------
Confidence 99999999995 5999998765 34444 678777 79999999999999988743
Q ss_pred ccccccccccCcceeeeeEEEEeCCCCCCCCCCe--EEcCCCceEEEecCCceEEecCCCCCCCCCCCCCCCCChhHHHH
Q psy10285 495 QEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPM--VIDTTGTYFRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNE 572 (673)
Q Consensus 495 ~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~--~~~~~~~y~~~~~~~g~~i~G~~~~~~~~~~~~~~~~~~~~~~~ 572 (673)
+|+.|.+++++.++.+..+....++ .......|++|.. ++.+++|.+...... +...+.+.+ +
T Consensus 199 ---------~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~y~~p~~-~g~~~iG~~~~~~~~----~~~~~~~~~-~ 263 (337)
T TIGR02352 199 ---------LPLRPVRGQPLRLEAPAVPLLNRPLRAVVYGRRVYIVPRR-DGRLVVGATMEESGF----DTTPTLGGI-K 263 (337)
T ss_pred ---------CCccccCceEEEeeccccccCCcccceEEEcCCEEEEEcC-CCeEEEEEeccccCc----cCCCCHHHH-H
Confidence 4678889999888765322212222 2223568999986 566766655443221 122233444 8
Q ss_pred hHHHHHhhhccccccccccceeeeeccCCCCCCCceeecCCCCCcEEEEEccCCccccchhHHHHHHHHHHHcCC
Q psy10285 573 NVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAE 647 (673)
Q Consensus 573 ~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~~~G~~g~G~~~ap~~g~~va~~i~~~~ 647 (673)
.+++.+.++||.+...++.+.|+|+|++ |+|+.|+||++|..+|+|+++|++|+||+++|++|+.+|++|.+++
T Consensus 264 ~l~~~~~~~~P~l~~~~~~~~~~g~r~~-t~D~~piig~~~~~~~~~~~~g~~g~G~~~~p~~g~~la~~i~~~~ 337 (337)
T TIGR02352 264 ELLRDAYTILPALKEARLLETWAGLRPG-TPDNLPYIGEHPEDRRLLIATGHYRNGILLAPATAEVIADLILGKE 337 (337)
T ss_pred HHHHHHHHhCCCcccCcHHHheecCCCC-CCCCCCEeCccCCCCCEEEEcccccCceehhhHHHHHHHHHHhcCC
Confidence 8899999999999999999999999996 9999999999998899999999999999999999999999999763
No 13
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=100.00 E-value=5.5e-32 Score=291.90 Aligned_cols=328 Identities=18% Similarity=0.197 Sum_probs=245.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCc-chhhHHHHHHHHHHHH
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSL-RENIEMSLFGAEFLRN 323 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~-~~~~~~~~~~~~~~~~ 323 (673)
+||+|||+|++|+++|++|+ +.|.+|+|+|+... +.++|+.+.|.+...... ....++...+.++|++
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~---~~G~~V~vle~~~~--------~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~~~~~ 69 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAA---RRGLSVTVIERSSR--------AQGASVRNFGQVWPTGQAPGPAWDRARRSREIWLE 69 (365)
T ss_pred CCEEEECCCHHHHHHHHHHH---HCCCeEEEEeCCCC--------CCCcccccCceEEecCCCCccHHHHHHHHHHHHHH
Confidence 48999999999999999999 78999999999887 567788888877643222 3455677888889988
Q ss_pred HHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCce
Q psy10285 324 IKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEG 402 (673)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g 402 (673)
+.+... ..+.+.|.+.+. +++..+.+++..+..+..+.+.++++++++.+.+|.+..+.+..+++ .+.++
T Consensus 70 l~~~~~--------~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~~p~l~~~~~~~~~~-~~~~g 140 (365)
T TIGR03364 70 LAAKAG--------IWVRENGSLHLARTEEELAVLEEFAATREPAEYRVELLTPAEVAAKFPALRLDGLRGGLH-SPDEL 140 (365)
T ss_pred HHHHcC--------CCEEeCCEEEEeCCHHHHHHHHHHHHhhhhcCCCeEEECHHHHHHhCCCCCccCceEEEE-cCCCe
Confidence 876543 346778998888 66666667666666667788899999999999999887555555666 68899
Q ss_pred eeCHHHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 403 WFDPWLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
++||..++..|.+.+.+. |+++++ ++|++|+.. . |+|.+| .++||+||+|+|+|
T Consensus 141 ~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~~-------------------~--v~t~~g---~i~a~~VV~A~G~~ 196 (365)
T TIGR03364 141 RVEPREAIPALAAYLAEQHGVEFHWNTAVTSVETG-------------------T--VRTSRG---DVHADQVFVCPGAD 196 (365)
T ss_pred eECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEecC-------------------e--EEeCCC---cEEeCEEEECCCCC
Confidence 999999999999998876 999995 589998632 2 788888 57899999999999
Q ss_pred cHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCC-------------------------------CCeE
Q psy10285 481 SGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVN-------------------------------TPMV 529 (673)
Q Consensus 481 s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~-------------------------------~~~~ 529 (673)
+..|++.++ .++|+.|+|++++.++.+...... .|.+
T Consensus 197 s~~l~~~~~------------~~~~~~p~~~q~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (365)
T TIGR03364 197 FETLFPELF------------AASGVRRCKLQMMRTAPQPRLPLGTALLTGLSLRRYEGFAELPSAAALKARLQEEEPEL 264 (365)
T ss_pred hhhhCcchh------------hccCcceEEEEeeeccCCCCCcCCccccccceeeechhHhhCcchHHHHhhhcccCchh
Confidence 998876543 356788999998877643210000 0111
Q ss_pred EcC-CCceEEEecCCceEEecCCCCCCCCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCce
Q psy10285 530 IDT-TGTYFRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAI 608 (673)
Q Consensus 530 ~~~-~~~y~~~~~~~g~~i~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Pi 608 (673)
.+. ...|++|.. +|.+++|.+.+....++.. +.....+.+.+.+.+++ .+.+.++...|+|+|++ |+|..|+
T Consensus 265 ~~~~~~~~~~p~~-~g~~~iG~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~-~l~~~~~~~~w~G~r~~-t~d~~~v 337 (365)
T TIGR03364 265 LEWGIHLMVSQNP-DGELIIGDSHEYGLAPDPF----DDEEIDNLILAEAKTIL-GLPDLDIVERWQGVYAS-SPPAPIF 337 (365)
T ss_pred hhcCeEEEEEECC-CCCEEecCcccccCCCCCc----chHHHHHHHHHHHHHhc-CCCCCceEEEEeEEecC-CCCCCce
Confidence 111 246889985 4666666554432211111 12334355666666665 68888999999999997 8888888
Q ss_pred eecCCCCCcEEEEEccCCccccchhHHHH
Q psy10285 609 IGLHPSYHNIHFATGFSGHGIQQAPAIGR 637 (673)
Q Consensus 609 ig~~~~~~~l~~~~G~~g~G~~~ap~~g~ 637 (673)
++.. .+|+|+++||+|+||+++|++|+
T Consensus 338 ~~~~--~~g~~~a~G~~g~G~~~ap~~~~ 364 (365)
T TIGR03364 338 LERP--DDGVTVVVVTSGAGMTLSFGLAE 364 (365)
T ss_pred ecCC--CCCeEEEEecCCCcccccccccC
Confidence 8743 68999999999999999999986
No 14
>KOG2820|consensus
Probab=100.00 E-value=6e-32 Score=268.58 Aligned_cols=368 Identities=21% Similarity=0.239 Sum_probs=263.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
+..+|+|||+|+.|+++|++|+ +.|.++.++|+-+.. ...|++......++..+....+..+...+.+.|+
T Consensus 6 ~~~~viiVGAGVfG~stAyeLa---K~g~killLeqf~~p------h~~GSShg~sRIiR~~Y~e~~Y~~m~~ea~e~W~ 76 (399)
T KOG2820|consen 6 KSRDVIIVGAGVFGLSTAYELA---KRGDKILLLEQFPLP------HSRGSSHGISRIIRPAYAEDKYMSMVLEAYEKWR 76 (399)
T ss_pred cceeEEEEcccccchHHHHHHH---hcCCeEEEEeccCCC------cccCcccCcceeechhhhhHHHHHHHHHHHHHHH
Confidence 5688999999999999999999 889999999998872 4667777777788999988889999999999999
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCC-CCCcccceeEEeccCC
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFP-WLNTDDIALACLGLEK 400 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p-~~~~~~~~~g~~~~~~ 400 (673)
++..... .+...+...+. ...+..++......++..++..+.+..+++++++| .+..++-..|+. .+.
T Consensus 77 ~~~~~~g---------~~~~~~t~~~~~~~~e~~~~~sv~~~~k~~~l~h~~l~seEvrk~fP~~~~l~d~~~G~~-n~~ 146 (399)
T KOG2820|consen 77 NLPEESG---------VKLHCGTGLLISGDPERQRLDSVAANLKRKGLAHSVLISEEVRKRFPSNIPLPDGWQGVV-NES 146 (399)
T ss_pred hChhhhc---------eeecccceeeecCcHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHhCCCCccCCcchhhcc-ccc
Confidence 8876543 12223433333 33334556666667777888889999999999999 555555555666 688
Q ss_pred ceeeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCC
Q psy10285 401 EGWFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479 (673)
Q Consensus 401 ~g~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~ 479 (673)
+|++++.+-++.|...+++.|+.++.+ .|..+...+. ....+.|+|.+|. .+.|+.+|+++|+
T Consensus 147 gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e--------------~~~~v~V~Tt~gs--~Y~akkiI~t~Ga 210 (399)
T KOG2820|consen 147 GGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDE--------------EGNHVSVQTTDGS--IYHAKKIIFTVGA 210 (399)
T ss_pred ccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccC--------------CCceeEEEeccCC--eeecceEEEEecH
Confidence 999999999999999999999999966 6766664432 2235668999994 6999999999999
Q ss_pred CcHHHHHH-cCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeE-EcCCCceEEEe-cCCceEEecC------
Q psy10285 480 YSGQVARM-LKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMV-IDTTGTYFRRE-GLGNYYICGK------ 550 (673)
Q Consensus 480 ~s~~l~~~-~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~-~~~~~~y~~~~-~~~g~~i~G~------ 550 (673)
|...|++. +++. +|+.|.+-.+-.|..- .+.|+. ..+...|+.|. ++...+..|.
T Consensus 211 Wi~klL~~~~~~~------------~Pv~~i~ltvcywk~~----~~~~~~l~~d~~f~~F~~~~~~~~~~ya~p~~eYp 274 (399)
T KOG2820|consen 211 WINKLLPTSLAIG------------FPVAPIQLTVCYWKTK----KNMPVYLFDDDCFYAFPPYPDTKLIKYALPGYEYP 274 (399)
T ss_pred HHHhhcCcccccC------------CccceeEeehhhheee----cCCceeecCCCCceeccCCCCcceEEeccCCCCCc
Confidence 99999984 4443 4455554433333321 112221 11122222221 1111122221
Q ss_pred ----------CCCCCCCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCceeecCCCCCcEEE
Q psy10285 551 ----------SPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHF 620 (673)
Q Consensus 551 ----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~ 620 (673)
.+....+++.......+..+ +......+++.|.+.+-.....-.|++. +|||...+|+++|.+.||++
T Consensus 275 g~~k~~yh~g~~v~~~~~~~p~~~s~~~~i-dl~~~f~~~~~p~l~~~~p~~t~~C~YT-~TpD~~FviD~~P~~~Nv~V 352 (399)
T KOG2820|consen 275 GLMKVDYHEGSKVVPIDPDGPPKRSLPKAI-DLMRRFLRTFGPDLDDRSPINTKMCMYT-DTPDANFVIDKHPQYDNVFV 352 (399)
T ss_pred ceEEEeecCCCcCCCCCCCCCcccCcchHH-HHHHHHHHHhCccccCCCcceeeEEEee-CCCCcCeeeecCCCcccEEE
Confidence 11122222222222222222 4444555666799988888888899987 59999999999999999999
Q ss_pred EEccCCccccchhHHHHHHHHHHHcCCCC-ccCCcccccccccc
Q psy10285 621 ATGFSGHGIQQAPAIGRAVSELILDAEFK-TIDLSRFLLERVAR 663 (673)
Q Consensus 621 ~~G~~g~G~~~ap~~g~~va~~i~~~~~~-~~d~~~f~~~Rf~~ 663 (673)
++|++||||+++|.+|+++|+|+.+.... ..|..+|+.+||..
T Consensus 353 g~G~SGHGFK~aP~iGk~lae~~~~~~~e~~~d~~~f~~~rf~~ 396 (399)
T KOG2820|consen 353 GGGGSGHGFKFAPNIGKYLAEMAMGDLSEEWVDAWRFREDRFES 396 (399)
T ss_pred ecCCCCcceeecchHHHHHHHHhhhcccccceehhhhhhhhccc
Confidence 99999999999999999999999987742 46889999999975
No 15
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=100.00 E-value=3e-32 Score=295.51 Aligned_cols=336 Identities=19% Similarity=0.225 Sum_probs=249.5
Q ss_pred HHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcc--hhhHHH----HHHHHHHHHHHhhccccC
Q psy10285 259 IAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLR--ENIEMS----LFGAEFLRNIKHHCHVIG 332 (673)
Q Consensus 259 ~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~--~~~~~~----~~~~~~~~~l~~~~~~~~ 332 (673)
+|++|+ +.|.+|+|+|+... .+.++|+.+.|.+.+.+... ...++. ..+.++|+++.+
T Consensus 1 ~A~~La---~~G~~V~vlE~~~~-------~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~~~~~a~~l~~~l~~------ 64 (381)
T TIGR03197 1 TAYSLA---RRGWQVTLYEQDEA-------PAQGASGNPQGALYPLLSADDNPLSRFFLAAFLYARRFYRQLAE------ 64 (381)
T ss_pred ChHHHH---hCCCeeEEEeCCCc-------ccccCCCChhheeeeecCCCCCHHHHHHHHHHHHHHHHHHHHHh------
Confidence 589999 78999999999653 26788888888887654322 222333 244566666543
Q ss_pred CCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCc---ceeeCHhhHHhhCCCCCcccceeEEeccCCceeeCHHH
Q psy10285 333 EDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAK---NVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWL 408 (673)
Q Consensus 333 ~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~---~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g~i~~~~ 408 (673)
.+.++.|...|.+.++ ++++.+.+++.. ++.+.+ .++++.+++.+.++. .....+++ .+.++++||..
T Consensus 65 -~~~~~~~~~~G~L~~a~~~~~~~~l~~~~---~~~~~~~~~~~~l~~~e~~~~~~~---~~~~gal~-~~~~g~idp~~ 136 (381)
T TIGR03197 65 -AGFPFDHEWCGVLQLAYDEKEAERLQKLL---EQLGFPEELARWVDAEQASQLAGI---PLPYGGLF-FPQGGWLSPPQ 136 (381)
T ss_pred -cCCCcccccCceEEecCChHHHHHHHHHH---HhcCCCHHHheeCCHHHHHHhcCC---CCCCCceE-eCCCcccChHH
Confidence 2466778889999988 655555444433 345554 357888888887653 22344555 68899999999
Q ss_pred HHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHHHHHH
Q psy10285 409 YLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQVARM 487 (673)
Q Consensus 409 ~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~l~~~ 487 (673)
++..|.+.+++ |++++. ++|++|+.+++ ++.|+|.+|+ .++||+||+|+|.|+..+++.
T Consensus 137 ~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~-----------------~~~v~t~~g~--~~~a~~vV~a~G~~~~~l~~~ 196 (381)
T TIGR03197 137 LCRALLAHAGI-RLTLHFNTEITSLERDGE-----------------GWQLLDANGE--VIAASVVVLANGAQAGQLAQT 196 (381)
T ss_pred HHHHHHhccCC-CcEEEeCCEEEEEEEcCC-----------------eEEEEeCCCC--EEEcCEEEEcCCccccccccc
Confidence 99999999999 999985 59999987653 5668888883 589999999999999888653
Q ss_pred cCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEcCCCceEEEecCCceEEecCCCCCCCCCCCCCCCCCh
Q psy10285 488 LKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDTTGTYFRREGLGNYYICGKSPTPEQEPPVDNLDVDY 567 (673)
Q Consensus 488 ~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~i~G~~~~~~~~~~~~~~~~~~ 567 (673)
..+|+.|.|++++.+..+.... ..+.++. ...|++|.. ++.+++|.+.+.... + ...+.
T Consensus 197 --------------~~~pi~p~rg~~~~~~~~~~~~-~~~~~~~-~~~y~~p~~-~g~~~iG~t~~~~~~-~---~~~~~ 255 (381)
T TIGR03197 197 --------------AHLPLRPVRGQVSHLPATEALS-ALKTVLC-YDGYLTPAN-NGEHCIGASYDRNDD-D---LALRE 255 (381)
T ss_pred --------------ccCCccccccceeeccCCCccc-ccCceEe-CCceecccC-CCceEeecccCCCCC-C---CCcCH
Confidence 2567899999998877542111 2233332 346999986 566766765543321 1 12223
Q ss_pred hHHHHhHHHHHhhhccccc-----cccccceeeeeccCCCCCCCceeecCCC-------------------------CCc
Q psy10285 568 EYFNENVWPHLAHRVKAFE-----ELKVSNAWAGYYDFNYFDENAIIGLHPS-------------------------YHN 617 (673)
Q Consensus 568 ~~~~~~l~~~~~~~~P~l~-----~~~i~~~w~G~~~~~t~d~~Piig~~~~-------------------------~~~ 617 (673)
+. .+++++.+.++||.+. +.++.+.|+|+|++ |+|+.|+||++|. .+|
T Consensus 256 ~~-~~~~~~~~~~~~P~l~~~~~~~~~~~~~~~G~r~~-t~D~~Piig~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 333 (381)
T TIGR03197 256 AD-HAENLERLAECLPALAWASEVDISALQGRVGVRCA-SPDHLPLVGAVPDFEAIKEAYAELAKDKNRPIAEPAPYYPG 333 (381)
T ss_pred HH-HHHHHHHHHHhCcccchhhccCccccCceEEEecc-CCCcCccCCCCCCHHHHHHHHHHhcccccccccccCCCCCC
Confidence 33 3788899999999987 78899999999986 9999999999998 899
Q ss_pred EEEEEccCCccccchhHHHHHHHHHHHcCCCCccC---Cccccccccc
Q psy10285 618 IHFATGFSGHGIQQAPAIGRAVSELILDAEFKTID---LSRFLLERVA 662 (673)
Q Consensus 618 l~~~~G~~g~G~~~ap~~g~~va~~i~~~~~~~~d---~~~f~~~Rf~ 662 (673)
+|+++||+|+||+++|++|+.+|++|++++ ++.+ ++.|+|+||+
T Consensus 334 ~~~a~G~~g~G~~~ap~~g~~la~~i~~~~-~~~~~~~~~~~~~~rf~ 380 (381)
T TIGR03197 334 LYVLGGLGSRGLTSAPLAAEILAAQICGEP-LPLERDLLHALHPARFL 380 (381)
T ss_pred eEEEecccchHHHHHHHHHHHHHHHHhCCC-CCCcHHHHHhcChhhhc
Confidence 999999999999999999999999999776 4454 4789999996
No 16
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.97 E-value=2.1e-29 Score=274.35 Aligned_cols=345 Identities=17% Similarity=0.153 Sum_probs=259.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccC--CCeEEEEecCCCCCCCcccccccccccccCceecccC-cc--hhhHHHHHHH
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLD--GCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFS-LR--ENIEMSLFGA 318 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~--g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~-~~--~~~~~~~~~~ 318 (673)
.+||+|||||++|+++|++|+ +. |.+|+|+||... .+.++|+.+.|.++..+. .+ ....+...+.
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La---~~~~g~~V~llE~~~~-------~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~~~ 71 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQ---ERYPGARIAVLEKESG-------PARHQTGHNSGVIHAGVYYTPGSLKARFCRRGN 71 (393)
T ss_pred CccEEEECCcHHHHHHHHHHH---HhCCCCeEEEEeCCCc-------ccccccccCcceEccccccCcHHHHHHHHHHHH
Confidence 379999999999999999999 66 999999999874 356677777777765422 11 2456777888
Q ss_pred HHHHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEec
Q psy10285 319 EFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLG 397 (673)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~ 397 (673)
++|.++.+... +.|...|.+.+. ++.+.+.+++..+..+..|.+.++++.+++++.+|.+.. ..+.+
T Consensus 72 ~~~~~~~~~~~--------~~~~~~G~l~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~el~~~~P~l~~---~~al~- 139 (393)
T PRK11728 72 EATKAFCDQHG--------IPYEECGKLLVATSELELERMEALYERARANGIEVERLDAEELREREPNIRG---LGAIF- 139 (393)
T ss_pred HHHHHHHHHcC--------CCcccCCEEEEEcCHHHHHHHHHHHHHHHHCCCcEEEeCHHHHHHhCCCccc---cceEE-
Confidence 88888765433 346778999888 777777888888888889999999999999999998752 34555
Q ss_pred cCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEc
Q psy10285 398 LEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIA 476 (673)
Q Consensus 398 ~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlA 476 (673)
.+.++++++..++..|.+.+++.|++++. ++|+++...++ ++.|.+.+| +++||.||+|
T Consensus 140 ~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~-----------------~~~V~~~~g---~i~ad~vV~A 199 (393)
T PRK11728 140 VPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHAN-----------------GVVVRTTQG---EYEARTLINC 199 (393)
T ss_pred cCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCC-----------------eEEEEECCC---EEEeCEEEEC
Confidence 78999999999999999999999999995 48999987653 456778777 7999999999
Q ss_pred CCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEc------CCCceEEEecCCceEEecC
Q psy10285 477 AGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVID------TTGTYFRREGLGNYYICGK 550 (673)
Q Consensus 477 tG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~------~~~~y~~~~~~~g~~i~G~ 550 (673)
+|.|+..+++.+++. .++++.|+||+++.+..+........++.. ..+.|+.|+. +|.+++|.
T Consensus 200 ~G~~s~~l~~~~g~~----------~~~~v~p~rGq~~~~~~~~~~~~~~~v~~~p~~~~~~~g~~~~p~~-~G~~~~G~ 268 (393)
T PRK11728 200 AGLMSDRLAKMAGLE----------PDFRIVPFRGEYYRLAPEKNQLVNHLIYPVPDPAFPFLGVHLTRMI-DGSVTVGP 268 (393)
T ss_pred CCcchHHHHHHhCCC----------CCCceEEeeeEEEEeccccccccCCceecCCCCCCCcceEEeecCC-CCCEEECC
Confidence 999999999988753 246789999999888754222212222211 1357899985 57777764
Q ss_pred CCC-CCCCCCCCCCCC---------------------ChhHHHHhH---------HHHHhhhccccccccccceeeeecc
Q psy10285 551 SPT-PEQEPPVDNLDV---------------------DYEYFNENV---------WPHLAHRVKAFEELKVSNAWAGYYD 599 (673)
Q Consensus 551 ~~~-~~~~~~~~~~~~---------------------~~~~~~~~l---------~~~~~~~~P~l~~~~i~~~w~G~~~ 599 (673)
+.. .......+..+. ..+ ..+++ ++.+.+++|.|....+...|+|+||
T Consensus 269 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~a~~~~P~l~~~~i~~~~~G~Rp 347 (393)
T PRK11728 269 NAVLAFKREGYRKRDFSLRDLLEILTYPGFWKLAQKHWRS-GLGEMKNSLSKSGYLRLVQKYCPSLTLSDLQPYPAGVRA 347 (393)
T ss_pred CcceehhhcCccccCCCHHHHHHHHhccchHHHHHHHHHH-HHHHHHhhhhHHHHHHHHHHhCCCCCHHHcccCCCceee
Confidence 222 111010000000 112 22444 5889999999999999999999999
Q ss_pred --CCCCCCCceeec-CCCCCcEEEEEccCCccccchhHHHHHHHHHH
Q psy10285 600 --FNYFDENAIIGL-HPSYHNIHFATGFSGHGIQQAPAIGRAVSELI 643 (673)
Q Consensus 600 --~~t~d~~Piig~-~~~~~~l~~~~G~~g~G~~~ap~~g~~va~~i 643 (673)
+ ++|+.|+-+. +...++.+++.|..+.|+|.+|.+|+.|++++
T Consensus 348 ~~~-~~d~~~~~d~~i~~~~~~~~~~~~~spg~t~s~~ia~~v~~~~ 393 (393)
T PRK11728 348 QAV-SRDGKLVDDFLFVETPRSLHVCNAPSPAATSSLPIGEHIVSKV 393 (393)
T ss_pred eee-CCCCCccCceEEecCCCEEEEcCCCCchHHccHHHHHHHHhhC
Confidence 6 8998766665 22348899999999999999999999999864
No 17
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.97 E-value=1.7e-28 Score=276.49 Aligned_cols=343 Identities=21% Similarity=0.254 Sum_probs=251.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccC----cchhhHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFS----LRENIEMSLFGA 318 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~----~~~~~~~~~~~~ 318 (673)
..+||+|||||++|+.+|++|+ ..|.+|+|||+... +.++|+.+.|.++..+. .......+....
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La---~rG~~V~LlEk~d~--------~~GaS~~~~gllh~g~ry~~~~~~~~~~~~~e~ 73 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCA---LRGLRCILVERHDI--------ATGATGRNHGLLHSGARYAVTDAESARECISEN 73 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHH---HcCCeEEEEECCCC--------CCCcccccccceeccchhcccCHHHHHHHHHHH
Confidence 4589999999999999999999 88999999999776 67788888888775322 112222333344
Q ss_pred HHHHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEec
Q psy10285 319 EFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLG 397 (673)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~ 397 (673)
+++.++..+ + +...+.+.+. ++.+...+...++.+...|++.++++++++.+++|.++.. +.++++
T Consensus 74 ~~l~~~a~~----------~-~~~~g~l~~~~~~~~~~~~~~~~~~~~~~Gi~~~~l~~~e~~~~eP~l~~~-~~ga~~- 140 (546)
T PRK11101 74 QILKRIARH----------C-VEPTDGLFITLPEDDLAFQATFIRACEEAGIEAEAIDPQQALILEPAVNPA-LIGAVK- 140 (546)
T ss_pred HHHHHhchH----------h-hcccCCceEEeccccHHHHHHHHHHHHHcCCCcEEECHHHHHHhCCCcCcc-ceEEEE-
Confidence 445554322 1 3345656665 5555566667777778889999999999999999998754 454555
Q ss_pred cCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEc-CCCCeeEEecCEEEE
Q psy10285 398 LEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD-EKGELKTITFAICVI 475 (673)
Q Consensus 398 ~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t-~~G~~~~i~ad~VVl 475 (673)
.+ ++++||.+++..+.+.+.++|+++++ ++|++|..++ +++.++.+.. .+|+..+|+||.||+
T Consensus 141 ~~-dg~vdp~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~--------------~~v~gv~v~d~~~g~~~~i~A~~VVn 205 (546)
T PRK11101 141 VP-DGTVDPFRLTAANMLDAKEHGAQILTYHEVTGLIREG--------------DTVCGVRVRDHLTGETQEIHAPVVVN 205 (546)
T ss_pred ec-CcEECHHHHHHHHHHHHHhCCCEEEeccEEEEEEEcC--------------CeEEEEEEEEcCCCcEEEEECCEEEE
Confidence 56 57999999999999999999999996 5999998865 5677766643 334335899999999
Q ss_pred cCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEE---cC-CCceEEEecCCceEEecCC
Q psy10285 476 AAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVI---DT-TGTYFRREGLGNYYICGKS 551 (673)
Q Consensus 476 AtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~---~~-~~~y~~~~~~~g~~i~G~~ 551 (673)
|||.|+..|+.+.++ ++|+.|.||++++++.+.. ..++. .+ ...|+.|. ++.+++|.+
T Consensus 206 AaG~wa~~l~~~~g~------------~~~i~p~kG~~lv~~~~~~----~~vi~~~~~~~~~~~~vp~--~~~~liGtT 267 (546)
T PRK11101 206 AAGIWGQHIAEYADL------------RIRMFPAKGSLLIMDHRIN----NHVINRCRKPADADILVPG--DTISLIGTT 267 (546)
T ss_pred CCChhHHHHHHhcCC------------CCceeecceEEEEECCccC----ceeEeccCCCCCCCEEEec--CCEEEEeeC
Confidence 999999999987663 5679999999998874311 11111 12 23456664 356788877
Q ss_pred CCCCCCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCC----------CceeecC--CCCCcEE
Q psy10285 552 PTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDE----------NAIIGLH--PSYHNIH 619 (673)
Q Consensus 552 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~----------~Piig~~--~~~~~l~ 619 (673)
.......+.++..++.+.+ +.+++.+.+++|.|....+...|+|+||...++. .++++.. .+.+|++
T Consensus 268 ~~~~~~~~~~~~~~t~~~i-~~Ll~~~~~l~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~ii~~~~~~g~~gli 346 (546)
T PRK11101 268 STRIDYDQIDDNRVTAEEV-DILLREGEKLAPVMAKTRILRAYAGVRPLVASDDDPSGRNVSRGIVLLDHAERDGLDGFI 346 (546)
T ss_pred CCCccCCCcCCCCCCHHHH-HHHHHHHHHhCCCCCccCEEEEEEEeccCCCCCCCCcccccCCCeEEeecccccCCCCeE
Confidence 6543222233345556666 8999999999999999999999999998632233 3678743 3458999
Q ss_pred EEEccCCccccchhHHHHHHHHHHHcC
Q psy10285 620 FATGFSGHGIQQAPAIGRAVSELILDA 646 (673)
Q Consensus 620 ~~~G~~g~G~~~ap~~g~~va~~i~~~ 646 (673)
.++| | -++.++.+|+.+++++...
T Consensus 347 ~i~G--G-kltt~r~~Ae~v~d~v~~~ 370 (546)
T PRK11101 347 TITG--G-KLMTYRLMAEWATDAVCRK 370 (546)
T ss_pred EEEC--C-hHHHHHHHHHHHHHHHHHh
Confidence 9999 3 3999999999999999743
No 18
>KOG2852|consensus
Probab=99.96 E-value=3.5e-28 Score=236.26 Aligned_cols=355 Identities=16% Similarity=0.246 Sum_probs=243.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhc---cCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKV---LDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAE 319 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~---~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~ 319 (673)
..++|+|||||++|+.+||+|+++. +.-..|+++|+... .+++++...|.+..+........+...+.+
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I--------A~gaSGkasgfLa~wc~~s~~~~La~lsfk 80 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI--------AGGASGKASGFLAKWCQPSIIQPLATLSFK 80 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc--------ccccccccchhhHhhhCCcccchhhHHHHH
Confidence 4588999999999999999999322 11278999999998 677888888887744444445678888899
Q ss_pred HHHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEecc
Q psy10285 320 FLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 398 (673)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~ 398 (673)
+.+++.++.+-.. ...|+.-..+.+. +-+... -.+.+...+|+.++...+ ...+ |. -
T Consensus 81 Lh~~LsdeydGvn----nwgYRaltTws~ka~~en~~--------p~k~pegldWi~~e~v~~-~ssi-------G~--t 138 (380)
T KOG2852|consen 81 LHEELSDEYDGVN----NWGYRALTTWSCKADWENTN--------PAKVPEGLDWIQRERVQK-CSSI-------GS--T 138 (380)
T ss_pred HHHHHHHhhcCcc----cccceeeeEEEEEeecccCC--------cccCCcchhhhhhHHhhh-heec-------cC--C
Confidence 9999988776211 2234443334333 100000 011112233444433221 1111 11 2
Q ss_pred CCceeeCHHHHHHHHHHHHHHcC-CeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcC
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISLG-AEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAA 477 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~G-v~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAt 477 (673)
...++++|+.|++.++..+++.| |+++.+.|.++..+. ++++++....+.+......++++|+++
T Consensus 139 ~ttaqvhP~lFc~~i~sea~k~~~V~lv~Gkv~ev~dEk--------------~r~n~v~~ae~~~ti~~~d~~~ivvsa 204 (380)
T KOG2852|consen 139 NTTAQVHPYLFCHFILSEAEKRGGVKLVFGKVKEVSDEK--------------HRINSVPKAEAEDTIIKADVHKIVVSA 204 (380)
T ss_pred CccceeCHHHHHHHHHHHHHhhcCeEEEEeeeEEeeccc--------------ccccccchhhhcCceEEeeeeEEEEec
Confidence 45789999999999999998885 999999999987333 566664444333333567888999999
Q ss_pred CCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEE----------cCCCceEEEecCCceEE
Q psy10285 478 GAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVI----------DTTGTYFRREGLGNYYI 547 (673)
Q Consensus 478 G~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~----------~~~~~y~~~~~~~g~~i 547 (673)
|.|++.|++.++ +...|-..+.+..+..+.....++. ..+..|.|+. +..|+
T Consensus 205 GPWTskllp~~r----------------IsglrihsI~l~~~e~~v~~~avf~~l~~~~g~ei~~pe~y~rkd--~Evyi 266 (380)
T KOG2852|consen 205 GPWTSKLLPFTR----------------ISGLRIHSITLSPGEKPVGPSAVFCELNTMDGLEICKPEEYARKD--REVYI 266 (380)
T ss_pred CCCchhhccccc----------------cceeeeeeEEecCCCCCCCCceEEEEEEeCCCccccCcceeecCC--ceEEE
Confidence 999999987543 3333444444444332211111111 1134566765 35677
Q ss_pred ecCCCCCC-CCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCC-CCceeecCCCCCcEEEEEccC
Q psy10285 548 CGKSPTPE-QEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFD-ENAIIGLHPSYHNIHFATGFS 625 (673)
Q Consensus 548 ~G~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d-~~Piig~~~~~~~l~~~~G~~ 625 (673)
+|.++... .+.+.++..++++.. .+|.+.+..+.+.+.+..+..+-+|+.|. +.+ +.|+||+++. ++|+++||+
T Consensus 267 cg~~~~e~~lPedsd~v~~npeki-~~Lk~~a~~v~s~l~ks~v~~~qacfLP~-sn~tg~PvIget~s--g~yVaagHs 342 (380)
T KOG2852|consen 267 CGETDKEHLLPEDSDDVFVNPEKI-IELKEMADLVSSELTKSNVLDAQACFLPT-SNITGIPVIGETKS--GVYVAAGHS 342 (380)
T ss_pred ecCCCccccCCcccccceeCHHHH-HHHHHHHHHhhhhhccchhhhhhhccccc-cCCCCCceEeecCC--ceEEeeccc
Confidence 77766655 334445677788877 67777676667788888888899999986 655 8999999975 999999999
Q ss_pred CccccchhHHHHHHHHHHHcCCCCccCCcccccccccc
Q psy10285 626 GHGIQQAPAIGRAVSELILDAEFKTIDLSRFLLERVAR 663 (673)
Q Consensus 626 g~G~~~ap~~g~~va~~i~~~~~~~~d~~~f~~~Rf~~ 663 (673)
-||++.+|+.|+.+|||+++++..+.++++|+|+||.+
T Consensus 343 cWGItnaPaTG~~mAEllldgeaTSanid~f~p~~~~~ 380 (380)
T KOG2852|consen 343 CWGITNAPATGKCMAELLLDGEATSANIDPFDPNLGEK 380 (380)
T ss_pred ccceecCcchhHHHHHHHhccceeeeecCccCccccCC
Confidence 99999999999999999999998899999999999864
No 19
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.93 E-value=1.8e-23 Score=235.17 Aligned_cols=328 Identities=18% Similarity=0.219 Sum_probs=237.6
Q ss_pred HHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceeccc----CcchhhHHHHHHHHHHHHHHhhccccCCCC
Q psy10285 260 AYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQF----SLRENIEMSLFGAEFLRNIKHHCHVIGEDE 335 (673)
Q Consensus 260 A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 335 (673)
|+.|+ ..|.+|+||||... +.++|..+.|.++..+ ......+.+.....+|.++..+
T Consensus 1 ArdLa---~rGl~V~llEk~d~--------~~GaS~rnsglih~G~ry~~~~~~~a~~~~~~~~~l~~~a~~-------- 61 (516)
T TIGR03377 1 MRDLA---LRGLRCILLEQGDL--------AHGTTGRNHGLLHSGARYAVTDQESARECIEENRILKRIARH-------- 61 (516)
T ss_pred ChhHH---HCCCCEEEEeCCCc--------ccccccccccCcCcchhhhccCHHHHHHHHHHHHHHHHhChH--------
Confidence 56788 78999999999877 6778888888776432 2222333444455555555321
Q ss_pred CCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCceeeCHHHHHHHHH
Q psy10285 336 PDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVK 414 (673)
Q Consensus 336 ~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g~i~~~~~~~~l~ 414 (673)
.+.+.|.+++. ++.+...+.+.+..++..|++.++++++++.+.+|.++.+ ..++++ .+ ++++||.+++..+.
T Consensus 62 ---~~~~~g~L~va~~~~~~~~~~~~~~~~~~~gi~~~~l~~~e~~~~~P~l~~~-~~ga~~-~~-dg~vdp~~l~~al~ 135 (516)
T TIGR03377 62 ---CVEDTGGLFITLPEDDLEFQKQFLAACREAGIPAEEIDPAEALRLEPNLNPD-LIGAVK-VP-DGTVDPFRLVAANV 135 (516)
T ss_pred ---hccCCCceEEecCcccHHHHHHHHHHHHHCCCCceEECHHHHHHHCCCCChh-heEEEE-eC-CcEECHHHHHHHHH
Confidence 24567878777 6666677777788788899999999999999999998754 444554 56 58999999999999
Q ss_pred HHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEEecCEEEEcCCCCcHHHHHHcCCCC
Q psy10285 415 KKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTITFAICVIAAGAYSGQVARMLKIGD 492 (673)
Q Consensus 415 ~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i~ad~VVlAtG~~s~~l~~~~g~~~ 492 (673)
+.++++|+++++ ++|++|..++ +++.++.+. +.+|+..+++|+.||+|+|.|+..|+++.|+
T Consensus 136 ~~A~~~Ga~i~~~t~V~~i~~~~--------------~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l~~~~g~-- 199 (516)
T TIGR03377 136 LDAQEHGARIFTYTKVTGLIREG--------------GRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRIAEYAGL-- 199 (516)
T ss_pred HHHHHcCCEEEcCcEEEEEEEEC--------------CEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHHHHhcCC--
Confidence 999999999995 5999998865 566676664 3345445899999999999999999988764
Q ss_pred CcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEcCCCceEEEecCCceEEecCCCCCCCCCCCCCCCCChhHHHH
Q psy10285 493 KNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDTTGTYFRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNE 572 (673)
Q Consensus 493 ~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~i~G~~~~~~~~~~~~~~~~~~~~~~~ 572 (673)
.+|+.|.||+.+.++.+........+.......|++|. ++.+++|.+......+ ++..++.+++ +
T Consensus 200 ----------~~~i~p~kG~~lv~~~~~~~~~~~~~~~~~~g~~~~P~--~~~~liGtT~~~~~~~--~~~~~~~~~v-~ 264 (516)
T TIGR03377 200 ----------DIRMFPAKGALLIMNHRINNTVINRCRKPSDADILVPG--DTISIIGTTSERIDDP--DDLPVTQEEV-D 264 (516)
T ss_pred ----------CCceecceEEEEEECCcccccccccccCCCCCcEEEEC--CCeEEEecCCCCCCCC--CCCCCCHHHH-H
Confidence 46788999999888643211111111112235688886 3566777766644322 2233445555 8
Q ss_pred hHHHHHhhhccccccccccceeeeeccCCCCC----------CCceeec--CCCCCcEEEEEccCCccccchhHHHHHHH
Q psy10285 573 NVWPHLAHRVKAFEELKVSNAWAGYYDFNYFD----------ENAIIGL--HPSYHNIHFATGFSGHGIQQAPAIGRAVS 640 (673)
Q Consensus 573 ~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d----------~~Piig~--~~~~~~l~~~~G~~g~G~~~ap~~g~~va 640 (673)
.+++.+.++||.+....+...|+|+||....+ ...+++. .++.+|++.++| |+ ++.++.+|+.++
T Consensus 265 ~ll~~~~~~~P~l~~~~i~~~~aGvRPl~~~~~~~~~~~~sR~~~i~~~~~~~~~~g~i~i~G--Gk-ltt~r~~Ae~~~ 341 (516)
T TIGR03377 265 VLLREGAKLAPMLAQTRILRAFAGVRPLVAVDDDPSGRNISRGIVLLDHAERDGLPGFITITG--GK-LTTYRLMAEWAT 341 (516)
T ss_pred HHHHHHHHhCcccccCCEEEEEeecccccCCCCCCCccccCCCeEEeecccccCCCCeEEEec--ch-HHHHHHHHHHHH
Confidence 99999999999999999999999999853221 1245553 245689999999 33 999999999999
Q ss_pred HHHHcC
Q psy10285 641 ELILDA 646 (673)
Q Consensus 641 ~~i~~~ 646 (673)
+++...
T Consensus 342 d~~~~~ 347 (516)
T TIGR03377 342 DVVCKK 347 (516)
T ss_pred HHHHHH
Confidence 999643
No 20
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.92 E-value=8.5e-23 Score=217.50 Aligned_cols=355 Identities=20% Similarity=0.248 Sum_probs=262.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCc---chhhHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSL---RENIEMSLFGAE 319 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~---~~~~~~~~~~~~ 319 (673)
..+||+|||||++|+++|+.|+ +.....+|+|+||... .+..+|..|.|.++..+.. ....+++.....
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls-~~~p~~~V~llEk~~~-------~a~~sS~~NSgviHag~~y~p~slka~l~~~g~~ 73 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELS-EYEPDLSVALLEKEDG-------VAQESSSNNSGVIHAGLYYTPGSLKAKLCVAGNI 73 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHH-HhCCCceEEEEEccCc-------cccccccCcccceeccccCCCcchhhHHHHHHHH
Confidence 4589999999999999999999 2233499999999887 5677777788777754422 234567777777
Q ss_pred HHHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCc-ceeeCHhhHHhhCCCCCcccceeEEec
Q psy10285 320 FLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAK-NVLLGPEQLKAKFPWLNTDDIALACLG 397 (673)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~-~~~l~~~~~~~~~p~~~~~~~~~g~~~ 397 (673)
.+..+.+++. ..|...|.+.++ ++.+.+.+++.++..++.++. .+.++.++++++.|.+... ..+..+
T Consensus 74 ~~~~~~kq~~--------~~f~~~g~l~vA~~e~e~~~L~~l~~~~~~ngv~~~~~ld~~~i~~~eP~l~~~--~~aal~ 143 (429)
T COG0579 74 NEFAICKQLG--------IPFINCGKLSVATGEEEVERLEKLYERGKANGVFDLEILDKEEIKELEPLLNEG--AVAALL 143 (429)
T ss_pred HHHHHHHHhC--------CcccccCeEEEEEChHHHHHHHHHHHHHhhCCCcceeecCHHHHHhhCcccccc--ceeeEE
Confidence 7777776654 446667999888 999999999999999999998 8999999999999998754 234444
Q ss_pred cCCceeeCHHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEc
Q psy10285 398 LEKEGWFDPWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIA 476 (673)
Q Consensus 398 ~~~~g~i~~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlA 476 (673)
.+..+.+|+..++..|.+.+.++|++++ +++|++|+..++ | ...+.|.+|+.. ++|+.||+|
T Consensus 144 ~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d-------------g---~~~~~~~~g~~~-~~ak~Vin~ 206 (429)
T COG0579 144 VPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSD-------------G---VFVLNTSNGEET-LEAKFVINA 206 (429)
T ss_pred cCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCC-------------c---eEEEEecCCcEE-EEeeEEEEC
Confidence 8999999999999999999999999999 679999999885 2 344677888533 999999999
Q ss_pred CCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEc-------CCCceEEEecCCceEEec
Q psy10285 477 AGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVID-------TTGTYFRREGLGNYYICG 549 (673)
Q Consensus 477 tG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~y~~~~~~~g~~i~G 549 (673)
+|.++..|+++.|+.. .....|++|+.+.+... ........++. +.++++.++ .+|.++.|
T Consensus 207 AGl~Ad~la~~~g~~~----------~~~~~P~~G~y~~~~~~-~~~~~~~~Iy~~p~~~~p~~gV~~~~~-idG~~l~G 274 (429)
T COG0579 207 AGLYADPLAQMAGIPE----------DFKIFPVRGEYLVLDNE-VKALLRHKIYPVPNPGLPGLGVHHTPT-IDGSLLFG 274 (429)
T ss_pred CchhHHHHHHHhCCCc----------ccccCccceEEEEEccc-ccccccceeecCCCCCCCCCcceeecc-cCCeEEEC
Confidence 9999999999999752 24567778877766642 11111111111 135677777 46788888
Q ss_pred CCCCCCCCCCCCCCCCChhHHHHhHHHHHhhhccccc-cccccceeeeeccC----CCCCCCceeecCCCCCcEEEEEcc
Q psy10285 550 KSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFE-ELKVSNAWAGYYDF----NYFDENAIIGLHPSYHNIHFATGF 624 (673)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~-~~~i~~~w~G~~~~----~t~d~~Piig~~~~~~~l~~~~G~ 624 (673)
-+..........+...+.+. .+.+.......+|.+. .-.....+.|.|+. ..+....+|-.....++....+|.
T Consensus 275 P~A~~~~~~~k~~~~~~~d~-~d~v~~~~~~~~~~~~~~~~~~~~y~~~r~~~~~~~~~~~~~~ip~~~~~~~~~~~aGi 353 (429)
T COG0579 275 PNALDSPKFLKGDRGVDFDL-LDSVRKANSRGMPDLGIKNNVLANYAGIRPILKEPRLPALDFIIPEAKDEDWFINVAGI 353 (429)
T ss_pred CCcccchhhhccccccccch-hhhHHHhhhhhcccccccccchhhhheeccccccccccccceecccccCCCCceeeeeE
Confidence 66554311111011122222 3667777778888776 44556677888873 255555666655556888999999
Q ss_pred CCccccchhHHHHHHHHHHHc
Q psy10285 625 SGHGIQQAPAIGRAVSELILD 645 (673)
Q Consensus 625 ~g~G~~~ap~~g~~va~~i~~ 645 (673)
=..|++.+|.+++.+++++..
T Consensus 354 Rsq~lt~~~a~~~~~~~~~t~ 374 (429)
T COG0579 354 RSQGLTADPAIAGGVLELLTE 374 (429)
T ss_pred EccccccChhHhhhHhhhccc
Confidence 999999999999999999964
No 21
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.92 E-value=3e-22 Score=228.35 Aligned_cols=348 Identities=14% Similarity=0.129 Sum_probs=222.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecc----cC-----cchhhHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQ----FS-----LRENIEM 313 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~----~~-----~~~~~~~ 313 (673)
..+||+|||||+.|+.+|++|+ ..|.+|+|||+... +.++|..+.+.++.. .. ......+
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA---~rGl~V~LvE~~d~--------a~GtSsrss~lihgg~ryl~~~~~~~~~~~~~l 138 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAA---TRGLRVGLVEREDF--------SSGTSSRSTKLIHGGVRYLEKAVFQLDYGQLKL 138 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHH---hCCCEEEEEecccc--------CCCcccchhhhhhhHHHHHHHHhhCCCccceee
Confidence 3489999999999999999999 89999999999977 455666565444321 10 0011222
Q ss_pred HHHHHHHHHHHHhhcc-ccCCCCCCcceeecCeEEEe-ccchHHHHH---HHHHHH-HHcCC-cceeeCHhhHHhhCCCC
Q psy10285 314 SLFGAEFLRNIKHHCH-VIGEDEPDVNFTPNGYLFCA-SQDGAATLE---KNHQLQ-KELGA-KNVLLGPEQLKAKFPWL 386 (673)
Q Consensus 314 ~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~---~~~~~~-~~~g~-~~~~l~~~~~~~~~p~~ 386 (673)
...+.+....+.+... +.. ..+.+... .......+. ..+..+ ...+. ..++++++++.+++|.+
T Consensus 139 ~~e~l~er~~l~~~ap~l~~---------~l~~~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~e~~~~~P~L 209 (627)
T PLN02464 139 VFHALEERKQLIENAPHLCH---------ALPIMTPCYDWFEVPYYWAGLKAYDLVAGPRLLHLSRYYSAKESLELFPTL 209 (627)
T ss_pred hHHHHHHHHHHHhhChhhcc---------ccceeeeccchhhhHHHHHHHHHHHHhcCCcCCCCceEECHHHHHHhCCCC
Confidence 3333322222211111 000 11111111 111111101 111111 11122 35889999999999999
Q ss_pred Ccc----cceeEEeccCCceeeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecC-CccccccCCCCCCccceeeEEEEc
Q psy10285 387 NTD----DIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRR-NNQVHYEGYDDGEYHSVNECVVRD 460 (673)
Q Consensus 387 ~~~----~~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~-~~~~~~~~~~~~~~~~v~gv~V~t 460 (673)
..+ .+.++++ +.++++||.+++..|.+.+++.|+++++. +|+++..++ + +++.++.+..
T Consensus 210 ~~~~~~~~l~ga~~--~~Dg~vdp~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~-------------g~v~gV~v~d 274 (627)
T PLN02464 210 AKKGKDGSLKGTVV--YYDGQMNDSRLNVALACTAALAGAAVLNYAEVVSLIKDEST-------------GRIVGARVRD 274 (627)
T ss_pred CccccccceeEEEE--ecCcEEcHHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCC-------------CcEEEEEEEE
Confidence 765 3444443 45799999999999999999999999965 999998764 3 5677766643
Q ss_pred -CCCCeeEEecCEEEEcCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEcC----CCc
Q psy10285 461 -EKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDT----TGT 535 (673)
Q Consensus 461 -~~G~~~~i~ad~VVlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~ 535 (673)
.+|+..+++||.||+|+|+|+..|+.+++.. ...++.|.||+.+.++....+. ..+++... ..+
T Consensus 275 ~~tg~~~~i~a~~VVnAaGaws~~l~~~~g~~----------~~~~I~p~kG~hlvl~~~~~~~-~~~~i~~~~~dgr~~ 343 (627)
T PLN02464 275 NLTGKEFDVYAKVVVNAAGPFCDEVRKMADGK----------AKPMICPSSGVHIVLPDYYSPE-GMGLIVPKTKDGRVV 343 (627)
T ss_pred CCCCcEEEEEeCEEEECCCHhHHHHHHhccCc----------CCCceEeeeeEEEecccccCCC-CceEEecCCCCCCEE
Confidence 2343347899999999999999999987532 1224889999877765311121 12233322 237
Q ss_pred eEEEecCCceEEecCCCCCCCCCCCCCCCCChhHHHHhHHHHHhhhcc-ccccccccceeeeeccCCCCCCCceeecCCC
Q psy10285 536 YFRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVK-AFEELKVSNAWAGYYDFNYFDENAIIGLHPS 614 (673)
Q Consensus 536 y~~~~~~~g~~i~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P-~l~~~~i~~~w~G~~~~~t~d~~Piig~~~~ 614 (673)
|+.|. .+.+++|++.+....+. +..++.+++ +.|++.+.++|| .+....+...|+|+||. ++|..|.++..+.
T Consensus 344 ~~~P~--~g~~liGtTd~~~~~~~--~~~~t~~ei-~~Ll~~a~~~~~~~l~~~~v~~~waG~RPl-~~d~~~~~~~~~s 417 (627)
T PLN02464 344 FMLPW--LGRTVAGTTDSKTPITM--LPEPHEDEI-QFILDAISDYLNVKVRRSDVLSAWSGIRPL-AVDPSAKSTESIS 417 (627)
T ss_pred EEEec--CCcEEEecCCCCCCCCC--CCCCCHHHH-HHHHHHHHHhhCCCCChhhEEEEEEeEEee-ccCCCCCcccccC
Confidence 88998 35666676665433222 233444565 899999999998 68888999999999996 8787766655433
Q ss_pred C--------CcEEEEEccCCccccchhHHHHHHHHHHHc
Q psy10285 615 Y--------HNIHFATGFSGHGIQQAPAIGRAVSELILD 645 (673)
Q Consensus 615 ~--------~~l~~~~G~~g~G~~~ap~~g~~va~~i~~ 645 (673)
. +|++-++|.- ++....+|+.+++.+..
T Consensus 418 r~~~i~~~~~gli~i~GGk---~Tt~R~mAe~~~d~~~~ 453 (627)
T PLN02464 418 RDHVVCEEPDGLVTITGGK---WTTYRSMAEDAVDAAIK 453 (627)
T ss_pred CceEEEecCCCeEEEECCh---HHHHHHHHHHHHHHHHH
Confidence 3 3444444432 88889999999999865
No 22
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.90 E-value=4.2e-21 Score=215.09 Aligned_cols=345 Identities=15% Similarity=0.135 Sum_probs=218.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccC--cchhhHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFS--LRENIEMSLFGAEF 320 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~--~~~~~~~~~~~~~~ 320 (673)
..+||+|||||++|+.+|++|+ .+|.+|+||||... +.++|+.+.+.++.... .....++...+...
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la---~rG~~V~LlEk~d~--------~~GtS~~ss~lihgg~ryl~~~~~~l~~e~~~e 73 (502)
T PRK13369 5 ETYDLFVIGGGINGAGIARDAA---GRGLKVLLCEKDDL--------AQGTSSRSGKLVHGGLRYLEYYEFRLVREALIE 73 (502)
T ss_pred cccCEEEECCCHHHHHHHHHHH---hCCCcEEEEECCCC--------CCCCchhhhhhHHHHHHHHHhccHHHHHHHHHH
Confidence 4589999999999999999999 88999999999977 56777777776653221 11123344444443
Q ss_pred HHHHHhhccccCCCCCCcceeecCeEEEeccchHHHHH--HHHHHHHHcC----C-cceeeCHhhHHhhCCCCCccccee
Q psy10285 321 LRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLE--KNHQLQKELG----A-KNVLLGPEQLKAKFPWLNTDDIAL 393 (673)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~--~~~~~~~~~g----~-~~~~l~~~~~~~~~p~~~~~~~~~ 393 (673)
+..+.+... .+ ..+.+.+....+.....+. .....+...+ + +.+.++..+..+..| +.. .+.
T Consensus 74 ~~~l~~~ap-------~l-~~~~~~~~~~~~~~~~~~~~~~g~~ly~~~~~~~~~~~~~~l~~~~~~~~~~-l~~-~~~- 142 (502)
T PRK13369 74 REVLLAAAP-------HI-IWPMRFVLPHSPEDRPAWLVRLGLFLYDHLGGRKRLPGTRTLDLRRDPEGAP-LKP-EYT- 142 (502)
T ss_pred HHHHHHhCC-------cc-ccccceEEecccccccHHHHHHHHHHHHhccCCCCCCcceEechhhccccCC-chH-hcC-
Confidence 333332111 11 1122322222222211111 1111122222 1 245566655544444 322 233
Q ss_pred EEeccCCceeeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCC--CCeeEEec
Q psy10285 394 ACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEK--GELKTITF 470 (673)
Q Consensus 394 g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~--G~~~~i~a 470 (673)
+.+ ...+++++|.+++..+...++++|+++++. +|+++..+++ .+.|.+.+ |+..+++|
T Consensus 143 ~a~-~~~dg~vd~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~-----------------~~~v~~~~~~g~~~~i~a 204 (502)
T PRK13369 143 KGF-EYSDCWVDDARLVVLNALDAAERGATILTRTRCVSARREGG-----------------LWRVETRDADGETRTVRA 204 (502)
T ss_pred EEE-EEcCeeecHHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCC-----------------EEEEEEEeCCCCEEEEEe
Confidence 334 346788999999999999999999999965 8999987653 23344333 44457999
Q ss_pred CEEEEcCCCCcHHHHHHc-CCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEcC-C-CceEEEecCCceEE
Q psy10285 471 AICVIAAGAYSGQVARML-KIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDT-T-GTYFRREGLGNYYI 547 (673)
Q Consensus 471 d~VVlAtG~~s~~l~~~~-g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~~-~-~~y~~~~~~~g~~i 547 (673)
+.||+|+|+|+..+++++ |.. ...++.|.||+.+.++.+.... ...++..+ + .+|+.|.. ++..+
T Consensus 205 ~~VVnAaG~wa~~l~~~~~g~~----------~~~~v~p~kG~~lv~~~~~~~~-~~~~~~~~dgr~~~i~P~~-~~~~l 272 (502)
T PRK13369 205 RALVNAAGPWVTDVIHRVAGSN----------SSRNVRLVKGSHIVVPKFWDGA-QAYLFQNPDKRVIFANPYE-GDFTL 272 (502)
T ss_pred cEEEECCCccHHHHHhhccCCC----------CCcceEEeeEEEEEeCCccCCC-ceEEEeCCCCeEEEEEEec-CCEEE
Confidence 999999999999998854 432 1246889999888776321111 11112222 2 36889984 45667
Q ss_pred ecCCCCCC-CCCCCCCCCCChhHHHHhHHHHHhhhcc-ccccccccceeeeeccCCCCCC---------CceeecC--CC
Q psy10285 548 CGKSPTPE-QEPPVDNLDVDYEYFNENVWPHLAHRVK-AFEELKVSNAWAGYYDFNYFDE---------NAIIGLH--PS 614 (673)
Q Consensus 548 ~G~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~P-~l~~~~i~~~w~G~~~~~t~d~---------~Piig~~--~~ 614 (673)
+|.+.... ..+ .+..++.+++ +.+++.+.++|| .+....+...|+|+||. ++|+ ...|-.. .+
T Consensus 273 iGtTd~~~~~~~--~~~~~~~~~i-~~ll~~~~~~~~~~l~~~~i~~~waGlRPl-~~d~~~~~~~~sR~~~i~~~~~~g 348 (502)
T PRK13369 273 IGTTDIAYEGDP--EDVAADEEEI-DYLLDAANRYFKEKLRREDVVHSFSGVRPL-FDDGAGNPSAVTRDYVFDLDAETG 348 (502)
T ss_pred EEecCccccCCC--CCCCCCHHHH-HHHHHHHHHhhCCCCCHhHEEEEeeceEEc-CCCCCCCcccCCcceEEeeccccC
Confidence 77766542 222 1233455665 899999999997 89889999999999996 5442 2233322 22
Q ss_pred CCcEEEEEccCCccccchhHHHHHHHHHHHcC
Q psy10285 615 YHNIHFATGFSGHGIQQAPAIGRAVSELILDA 646 (673)
Q Consensus 615 ~~~l~~~~G~~g~G~~~ap~~g~~va~~i~~~ 646 (673)
.+|++.++|. ++|.++.+|+.+++++...
T Consensus 349 ~~gli~i~Gg---k~Tt~r~~Ae~v~d~~~~~ 377 (502)
T PRK13369 349 GAPLLSVFGG---KITTFRKLAEHALERLKPF 377 (502)
T ss_pred CCCeEEEeCC---hHhhHHHHHHHHHHHHHHh
Confidence 3789999983 7999999999999998654
No 23
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.89 E-value=1e-20 Score=211.79 Aligned_cols=346 Identities=16% Similarity=0.097 Sum_probs=211.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCc--chhhHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSL--RENIEMSLFGAEF 320 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~--~~~~~~~~~~~~~ 320 (673)
..+||+|||||++|+.+|+.|+ ..|.+|+||||... +.++|..+.+.++..+.. .....+...+..-
T Consensus 5 ~~~DVvIIGGGi~G~~~A~~la---~rGl~V~LvEk~d~--------~~GtS~~ss~lihgG~ryl~~~~~~l~~e~l~e 73 (508)
T PRK12266 5 ETYDLLVIGGGINGAGIARDAA---GRGLSVLLCEQDDL--------ASATSSASTKLIHGGLRYLEHYEFRLVREALAE 73 (508)
T ss_pred CcCCEEEECcCHHHHHHHHHHH---HCCCeEEEEecCCC--------CCCccccccccccchHHHhhhccHHHHHHHHHH
Confidence 4589999999999999999999 89999999999876 555565555544432211 1123444555443
Q ss_pred HHHHHhhccccCCCCCCcceeecCeEEEeccchH-HHHHHH-HHHHHHcCCcceeeCHhhHHhhC-----CCCCccccee
Q psy10285 321 LRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGA-ATLEKN-HQLQKELGAKNVLLGPEQLKAKF-----PWLNTDDIAL 393 (673)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~l~~~-~~~~~~~g~~~~~l~~~~~~~~~-----p~~~~~~~~~ 393 (673)
+..+..... .+ ..+...+........ ...... ......++. ...+...+..... |.+.. .+..
T Consensus 74 r~~l~~~~p-------~~-~~~l~~~~~~~~~~~~~~~~~~gl~lyd~~~~-~~~l~~~~~~~~~~~~~~~~L~~-~l~g 143 (508)
T PRK12266 74 REVLLRMAP-------HI-IWPMRFVLPHRPHLRPAWMIRAGLFLYDHLGK-RKSLPGSRGLDLGRDPAGSPLKP-EITR 143 (508)
T ss_pred HHHHHHhCC-------Cc-ccccceEEEecccccchHHHHHHHHHHHhhcC-CCCCChhhhhchhhcccCCCcch-hhcE
Confidence 433332221 00 001111111111100 000000 111111111 1122222222222 44433 2344
Q ss_pred EEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcC---CCCeeEEe
Q psy10285 394 ACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE---KGELKTIT 469 (673)
Q Consensus 394 g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~---~G~~~~i~ 469 (673)
+.. ..++++||.+++..+.+.+.+.|+++++ ++|+++..+++ .+.|.+. +|+..+++
T Consensus 144 ~~~--~~dg~vd~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~-----------------~~~v~~~~~~~g~~~~i~ 204 (508)
T PRK12266 144 GFE--YSDCWVDDARLVVLNARDAAERGAEILTRTRVVSARRENG-----------------LWHVTLEDTATGKRYTVR 204 (508)
T ss_pred EEE--EcCcccCHHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCC-----------------EEEEEEEEcCCCCEEEEE
Confidence 433 4567899999999999999999999996 49999987652 2334433 35445899
Q ss_pred cCEEEEcCCCCcHHHHHHc-CCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEcC--CCceEEEecCCceE
Q psy10285 470 FAICVIAAGAYSGQVARML-KIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDT--TGTYFRREGLGNYY 546 (673)
Q Consensus 470 ad~VVlAtG~~s~~l~~~~-g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~~--~~~y~~~~~~~g~~ 546 (673)
|+.||+|+|.|+..+++++ ++. .+.++.|.+|+.+.++..... ....++..+ ..+|+.|+. ++..
T Consensus 205 a~~VVnAaG~wa~~l~~~~~g~~----------~~~~i~p~kG~~lvl~~~~~~-~~~~~~~~~dgr~v~~~P~~-~g~~ 272 (508)
T PRK12266 205 ARALVNAAGPWVKQFLDDGLGLP----------SPYGIRLVKGSHIVVPRLFDH-DQAYILQNPDGRIVFAIPYE-DDFT 272 (508)
T ss_pred cCEEEECCCccHHHHHhhccCCC----------CCcceeeeeeEEEEECCcCCC-CcEEEEeCCCCCEEEEEEeC-CCeE
Confidence 9999999999999998753 532 235788999988877532111 011111222 235678884 4667
Q ss_pred EecCCCCCCCCCCCCCCCCChhHHHHhHHHHHhhhcc-ccccccccceeeeeccCCCCCCC---------ceeecC--CC
Q psy10285 547 ICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVK-AFEELKVSNAWAGYYDFNYFDEN---------AIIGLH--PS 614 (673)
Q Consensus 547 i~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P-~l~~~~i~~~w~G~~~~~t~d~~---------Piig~~--~~ 614 (673)
++|.+..+... +..+..++.+.+ +.+++.+.++|| .+....+...|+|+||. ++|+. .+|-.+ .+
T Consensus 273 liGttd~~~~~-~~~~~~~~~~~i-~~Ll~~~~~~~p~~l~~~~ii~~waG~RPl-~~d~~~~~~~~sr~~~i~~~~~~g 349 (508)
T PRK12266 273 LIGTTDVEYKG-DPAKVAISEEEI-DYLCKVVNRYFKKQLTPADVVWTYSGVRPL-CDDESDSAQAITRDYTLELDDENG 349 (508)
T ss_pred EEecCCCCCCC-CCCCCCCCHHHH-HHHHHHHHHhcCCCCCHHHEEEEeeeeEee-CCCCCCCcccCCcceEEEecccCC
Confidence 77776554221 111233444555 899999999996 78888999999999996 77743 344433 33
Q ss_pred CCcEEEEEccCCccccchhHHHHHHHHHHHcC
Q psy10285 615 YHNIHFATGFSGHGIQQAPAIGRAVSELILDA 646 (673)
Q Consensus 615 ~~~l~~~~G~~g~G~~~ap~~g~~va~~i~~~ 646 (673)
.+|++.++|. .++..+.+|+.+++++...
T Consensus 350 ~~gli~v~Gg---k~Tt~r~mAe~~~~~~~~~ 378 (508)
T PRK12266 350 GAPLLSVFGG---KITTYRKLAEHALEKLAPY 378 (508)
T ss_pred CCCeEEEEcC---hHHHHHHHHHHHHHHHHHh
Confidence 5789999984 4999999999999998643
No 24
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.86 E-value=2e-19 Score=195.32 Aligned_cols=347 Identities=18% Similarity=0.194 Sum_probs=232.2
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCc--chhhHHHHH---
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSL--RENIEMSLF--- 316 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~--~~~~~~~~~--- 316 (673)
...+||+|||||+.|+.+|..++ .+|.+|+++|+... .+|+|..+.+.++..... .....+..+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA---~RGl~v~LvE~~D~--------AsGTSsrstkLiHGGlRYl~~~e~~lvrEal~ 78 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAA---GRGLKVALVEKGDL--------ASGTSSRSTKLIHGGLRYLEQYEFSLVREALA 78 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHH---hCCCeEEEEecCcc--------cCcccCccccCccchhhhhhhcchHHHHHHHH
Confidence 36799999999999999999999 99999999999998 555555555555432111 111122222
Q ss_pred HHHHHHHHHhhccccCCCCCCcceeecCeEEEe-c-cchHHHHHHHHH-HHHHcCC-----cceeeCHhhHHhhCCCCCc
Q psy10285 317 GAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-S-QDGAATLEKNHQ-LQKELGA-----KNVLLGPEQLKAKFPWLNT 388 (673)
Q Consensus 317 ~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~-~~~~~~l~~~~~-~~~~~g~-----~~~~l~~~~~~~~~p~~~~ 388 (673)
..+.+.++..+ + ..+...+... + ....-.+..-+. .....|+ ..+.++..+...+.|.++.
T Consensus 79 Er~vL~~~APH----------~-v~p~~~~lp~~~~~~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~ 147 (532)
T COG0578 79 EREVLLRIAPH----------L-VEPLPFLLPHLPGLRDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKK 147 (532)
T ss_pred HHHHHHHhCcc----------c-cccCcCeEeccCCcccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccch
Confidence 22333333221 1 1223333333 2 111111211111 1112232 4677788888889999988
Q ss_pred ccceeEEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcC-CCCee
Q psy10285 389 DDIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE-KGELK 466 (673)
Q Consensus 389 ~~~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~-~G~~~ 466 (673)
+...+++.. .++++|+.+++...++.+.++|.++++ ++|+.+..++ + |.++.++.. +|+..
T Consensus 148 ~~l~ga~~y--~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~--------------~-v~gV~~~D~~tg~~~ 210 (532)
T COG0578 148 DGLKGAFRY--PDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREG--------------G-VWGVEVEDRETGETY 210 (532)
T ss_pred hhccceEEE--ccceechHHHHHHHHHHHHhcccchhhcceeeeeeecC--------------C-EEEEEEEecCCCcEE
Confidence 776655553 478999999999999999999999996 5999999887 5 778777653 46678
Q ss_pred EEecCEEEEcCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEcC----CCceEEEecC
Q psy10285 467 TITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDT----TGTYFRREGL 542 (673)
Q Consensus 467 ~i~ad~VVlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~~----~~~y~~~~~~ 542 (673)
+++|+.||+|||+|+..++++.+...+ .+..+.|.||..+++.. -.+ .+.+++... ...++.|+.
T Consensus 211 ~ira~~VVNAaGpW~d~i~~~~~~~~~--------~~~~vr~skGsHlVv~~-~~~-~~~a~~~~~~~d~r~~f~iP~~- 279 (532)
T COG0578 211 EIRARAVVNAAGPWVDEILEMAGLEQS--------PHIGVRPSKGSHLVVDK-KFP-INQAVINRCRKDGRIVFAIPYE- 279 (532)
T ss_pred EEEcCEEEECCCccHHHHHHhhcccCC--------CCccceeccceEEEecc-cCC-CCceEEeecCCCCceEEEecCC-
Confidence 999999999999999999998764321 11468899998888775 112 233443322 246778884
Q ss_pred CceEEecCCCCCCCCCCCCCCCCChhHHHHhHHHHHh-hhccccccccccceeeeeccCCCCCCCc---------eeecC
Q psy10285 543 GNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLA-HRVKAFEELKVSNAWAGYYDFNYFDENA---------IIGLH 612 (673)
Q Consensus 543 ~g~~i~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~P~l~~~~i~~~w~G~~~~~t~d~~P---------iig~~ 612 (673)
+..++|+|...-.. +.++..++.+++ +.+++.+. .+-|.+....|...|+|+||. -.|..+ .+-.+
T Consensus 280 -~~~liGTTD~~~~~-~~~~~~~~~eEi-dyll~~~~~~~~~~l~~~dI~~syaGVRPL-~~~~~~~~~~isR~~~l~~~ 355 (532)
T COG0578 280 -GKTLIGTTDTDYDG-DPEDPRITEEEI-DYLLDAVNRYLAPPLTREDILSTYAGVRPL-VDDGDDDTSAISRDHVLFDH 355 (532)
T ss_pred -CCEEeeccccccCC-CcccCCCCHHHH-HHHHHHHHhhhhccCChhheeeeeeeeeec-cCCCCCchhhccCceEEEec
Confidence 44588888775444 334455666776 88999888 344778889999999999997 433332 22222
Q ss_pred CCCCcEEEEEccCCccccchhHHHHHHHHHHHc
Q psy10285 613 PSYHNIHFATGFSGHGIQQAPAIGRAVSELILD 645 (673)
Q Consensus 613 ~~~~~l~~~~G~~g~G~~~ap~~g~~va~~i~~ 645 (673)
...++++.++|.- ++..-.+|+.+++.++.
T Consensus 356 ~~~~glltv~GGK---lTTyR~maE~a~d~v~~ 385 (532)
T COG0578 356 AELAGLLTVAGGK---LTTYRKMAEDALDAVCE 385 (532)
T ss_pred CCCCCeEEEecch---hHHhHHHHHHHHHHHHH
Confidence 2246788887764 88888888888888864
No 25
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=99.86 E-value=2.3e-19 Score=197.49 Aligned_cols=373 Identities=15% Similarity=0.082 Sum_probs=233.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcch---hhHHH-----
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRE---NIEMS----- 314 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~---~~~~~----- 314 (673)
..+||+|||||++|+++|+.|+ +...+.+|+|+||.....++.++....+...+.|.+...|.... ...+.
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~-~~~~~~~V~vlEr~~~~a~~sS~~~nNagt~hag~~e~nY~~~~~~g~~~~~ka~~i 83 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLK-ELDPDWNIEVVERLDSPAIESSNEWNNAGTGHAALCELNYTVQQPDGSIDIEKAKEI 83 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHH-hCCCCCeEEEEEcCCCcchhcCCCccccCcceeeehhhccCCcccCCcccHHHHHHH
Confidence 4579999999999999999999 22348999999994442222222222222336666666666543 33333
Q ss_pred ----HHHHHHHHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCC--cceee-CHhhHHhhCCCC
Q psy10285 315 ----LFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGA--KNVLL-GPEQLKAKFPWL 386 (673)
Q Consensus 315 ----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~--~~~~l-~~~~~~~~~p~~ 386 (673)
..+.++|..+...-. +.+ ..-.+.+.+.+.+. .+++.+.+++.++.++..++ .++++ +++++.+.+|.+
T Consensus 84 ~~~~~~s~~f~~~~~~~~~-~~~--~~~~i~~~~~m~~~~~~~~~~~L~~r~~~~~~~~~f~~~~~~~d~~el~~~~P~l 160 (497)
T PRK13339 84 NEQFEISKQFWGHLVKSGT-IGN--PREFINPLPHISFVRGKNNVKFLKKRYEALKQHPMFDNIEYTEDIEVMAKWMPLM 160 (497)
T ss_pred HHHHHHHHHHHHhhhhhcC-CCC--hHhhcccCCeEEEEEChHHHHHHHHHHHHhhccCCCCCcEEecCHHHHHHhCCcc
Confidence 556677766654211 110 01126678899888 88889999999999999888 88999 799999999988
Q ss_pred Ccc----cceeEEeccCCceeeCHHHHHHHHHHHHHH-cCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-
Q psy10285 387 NTD----DIALACLGLEKEGWFDPWLYLNAVKKKAIS-LGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR- 459 (673)
Q Consensus 387 ~~~----~~~~g~~~~~~~g~i~~~~~~~~l~~~~~~-~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~- 459 (673)
... ....+.+ .+.++.+|+..++..|.+.+.+ .|++++. ++|++|...++ + +|.+.
T Consensus 161 ~~~r~~~~~~~Al~-~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d-------------~---~w~v~v 223 (497)
T PRK13339 161 MPGREANEIMAASK-IDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSD-------------G---GWEVTV 223 (497)
T ss_pred cCCCCCCcceeEEE-CCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC-------------C---CEEEEE
Confidence 643 3344555 7899999999999999999965 4899985 59999987632 1 45454
Q ss_pred --cCCCCeeEEecCEEEEcCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCC-eEEcCC---
Q psy10285 460 --DEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTP-MVIDTT--- 533 (673)
Q Consensus 460 --t~~G~~~~i~ad~VVlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~-~~~~~~--- 533 (673)
+.+|+..+++||+||+|+|+|+..|++++|+.. ....++.|++|+.+.++.+.... ..+ .++.-.
T Consensus 224 ~~t~~g~~~~i~Ad~VV~AAGawS~~La~~~Gi~~--------~~~~~i~PvkGq~l~l~~~~~v~-~h~~~VY~v~~~~ 294 (497)
T PRK13339 224 KDRNTGEKREQVADYVFIGAGGGAIPLLQKSGIPE--------SKHLGGFPISGQFLRCTNPEVVK-QHQAKVYSKEPVG 294 (497)
T ss_pred EecCCCceEEEEcCEEEECCCcchHHHHHHcCCCc--------cCCCceEeeeEEEEEecCHHHhh-hcCceEeCCCCCC
Confidence 444522368999999999999999999988631 01357899999988876432111 111 122111
Q ss_pred -CceEEEecCCceE-------EecCCCCCC----CC---------CCCCCC-------CCCh---hHHH-------HhHH
Q psy10285 534 -GTYFRREGLGNYY-------ICGKSPTPE----QE---------PPVDNL-------DVDY---EYFN-------ENVW 575 (673)
Q Consensus 534 -~~y~~~~~~~g~~-------i~G~~~~~~----~~---------~~~~~~-------~~~~---~~~~-------~~l~ 575 (673)
..|..|+.+ ..+ .+|-+.... .. -...++ ..+. .... ...+
T Consensus 295 ~P~~~VPhlD-tr~i~G~~~v~~GP~A~~~~~~~r~~~~~d~~~~l~~~~~~~~~~~~~~~~~l~~~~~~e~~~~k~~~~ 373 (497)
T PRK13339 295 TPPMTVPHLD-TRYIDGKRSLLFGPYAGFGPKFLKHGSNLDLFKSVKPYNITTMLAVAVKNMPLIKYSIDQVMQTKEGRM 373 (497)
T ss_pred CCCCcCCCCC-CcEEcCceeEEECCCccchHHHhccCCHHHHHHHhCccCcHHHHHHHHhccHHHHHHHHHHhhCHHHHH
Confidence 134454432 222 222211110 00 000000 0000 0111 2344
Q ss_pred HHHhhhccccccccccceeeeeccCC-CCCCCceeec-------CCCCCc-EEEEEccCCccccchhHHHHHHHHHHHcC
Q psy10285 576 PHLAHRVKAFEELKVSNAWAGYYDFN-YFDENAIIGL-------HPSYHN-IHFATGFSGHGIQQAPAIGRAVSELILDA 646 (673)
Q Consensus 576 ~~~~~~~P~l~~~~i~~~w~G~~~~~-t~d~~Piig~-------~~~~~~-l~~~~G~~g~G~~~ap~~g~~va~~i~~~ 646 (673)
+.+++++|.+....+....+|+|+.. ..|+....+. +...++ +.++.|- +.|.+.+..+|..|++.+...
T Consensus 374 ~~~~~~~P~~~~~D~~~~~aGiR~Q~i~~~~~~~~dfl~~g~~~i~~~~~s~~~lna~-SPgATssl~ia~~v~~~~f~~ 452 (497)
T PRK13339 374 NHLRTFYPEARAEDWRLYTAGKRVQVIKDTPEHGKGFIQFGTEVVNSQDHSVIALLGE-SPGASTSVSVALEVLERNFPE 452 (497)
T ss_pred HHHHHhCCCCCHHHeeEcCCceEEEEEeCCCCccCCEEEecceeeecCCCeEEEecCC-CcHHHhhHHHHHHHHHHHhHH
Confidence 56778899887655556688888652 2333221121 112356 4445555 689999999999999887543
Q ss_pred C
Q psy10285 647 E 647 (673)
Q Consensus 647 ~ 647 (673)
.
T Consensus 453 ~ 453 (497)
T PRK13339 453 Y 453 (497)
T ss_pred H
Confidence 3
No 26
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.86 E-value=1.9e-19 Score=198.76 Aligned_cols=237 Identities=20% Similarity=0.220 Sum_probs=168.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccC--CCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLD--GCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEF 320 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~--g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~ 320 (673)
..+||+|||||++|+++|++|+ +. ..+|+|+||......+.++...++.....|.+...+. +........+.++
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La---~~~~~~~V~VlEk~~~~a~~aS~~~nnsg~iHag~~~~~y~-~~kA~~~~~~~~~ 119 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLS---KFTNLKKIALIERRSDFALVASHGKNNSQTIHCGDIETNYT-LEKARKVKRQADM 119 (497)
T ss_pred CcccEEEECccHHHHHHHHHHH---hhCCCCEEEEEecCcchhhcccCCCCCCccccceeehhcCC-HHHHHHHHHHHHH
Confidence 5689999999999999999999 43 3799999998641111110011111111222332332 2344555566666
Q ss_pred HHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCc-------ccce
Q psy10285 321 LRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNT-------DDIA 392 (673)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~-------~~~~ 392 (673)
++++..++. +...+..+...|.+.++ .+++.+.+++.++.++..+.++++++++++++.+|.+.. +...
T Consensus 120 ~~~~~~~L~---~~~~~~~~~~~G~l~va~~e~e~~~L~~~~~~~~~~~~~~e~ld~~el~e~eP~v~~~~~~~~~~e~~ 196 (497)
T PTZ00383 120 LRNYLTKLP---PSERDSIIFKMQKMVLGVGEKECEFLEKRYPVFKELFPSMQLLDKKEIHRVEPRVVLKNNHTLREEPL 196 (497)
T ss_pred HHHHHHHhc---ccccccceeeCCEEEEEECHHHHHHHHHHHHHHHccCCCeEEECHHHHHHhCcccccCccccccccce
Confidence 766665433 11123346678999888 888888898888888888888999999999999998742 2234
Q ss_pred eEEeccCCc-eeeCHHHHHHHHHHHHHH----cC--CeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCC
Q psy10285 393 LACLGLEKE-GWFDPWLYLNAVKKKAIS----LG--AEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGE 464 (673)
Q Consensus 393 ~g~~~~~~~-g~i~~~~~~~~l~~~~~~----~G--v~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~ 464 (673)
.+.+ .|.+ +.+||..++..|.+.+++ .| ++++. ++|++|+..++ . .+.|.|.+|
T Consensus 197 ~Al~-~p~~g~~Vd~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~--------------~--~~~V~T~~G- 258 (497)
T PTZ00383 197 AALY-VPNELTTVDYQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSND--------------S--LYKIHTNRG- 258 (497)
T ss_pred EEEE-eCCCCEEECHHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCC--------------C--eEEEEECCC-
Confidence 4555 6766 689999999999999999 78 66774 59999998743 1 456888888
Q ss_pred eeEEecCEEEEcCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEE
Q psy10285 465 LKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCF 516 (673)
Q Consensus 465 ~~~i~ad~VVlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~ 516 (673)
+++||+||+|+|+|+..|++++|+. .++++.|++|+.+..
T Consensus 259 --~i~A~~VVvaAG~~S~~La~~~Gi~----------~~~~i~Pv~G~~~~~ 298 (497)
T PTZ00383 259 --EIRARFVVVSACGYSLLFAQKMGYG----------LEYSCLPVAGSFYFS 298 (497)
T ss_pred --EEEeCEEEECcChhHHHHHHHhCCC----------CCCCEEecCceEEEc
Confidence 7999999999999999999999864 356777777755444
No 27
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.86 E-value=1e-18 Score=193.63 Aligned_cols=360 Identities=14% Similarity=0.111 Sum_probs=224.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccc--cccC-----ceecccCcch---hhH--
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTT--LSVG-----GLRQQFSLRE---NIE-- 312 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~--~~~g-----~i~~~~~~~~---~~~-- 312 (673)
+||+|||||++|+++|++|++ ...+.+|+|+||... .+.++|+ .+.| .+...+.... ...
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~-~~~g~~V~VlEk~~~-------~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~~~l~ 72 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRE-LEPNWSITLIERLDA-------VAAESSNPWNNAGTGHSALCELNYTPEMADGSIDIA 72 (483)
T ss_pred CcEEEECchHHHHHHHHHHHH-hCCCCeEEEEEcCCc-------chhhhCCCCCcccccccchhhccCCCccCCCchhHH
Confidence 489999999999999999992 124899999999764 2334444 2433 2222333211 112
Q ss_pred -------HHHHHHHHHHHHHhhccccCCCCCCccee-ecCeEEEe-ccchHHHHHHHHHHHHHcCC--ccee-eCHhhHH
Q psy10285 313 -------MSLFGAEFLRNIKHHCHVIGEDEPDVNFT-PNGYLFCA-SQDGAATLEKNHQLQKELGA--KNVL-LGPEQLK 380 (673)
Q Consensus 313 -------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~~~~~-~~~~~~~l~~~~~~~~~~g~--~~~~-l~~~~~~ 380 (673)
....+.++|..+.+. .++ ..+..|. ++|.+.++ .+++.+.+++.++.+++.++ .+++ ++++++.
T Consensus 73 ~a~~~~~~~~~s~~~~~~l~~~-g~~---~~~~~~~~~~G~L~va~~e~e~~~L~~~~~~~~~~g~~~~~~~~l~~~el~ 148 (483)
T TIGR01320 73 KAVGINEQFQVSRQFWAHLVEE-GIL---TDPKSFINPVPHVSFVHGSDGVAYLKKRYEALKGHPLFEGMEFSEDPATFA 148 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc-CCC---CChhhhccCCCeEEEEEChHHHHHHHHHHHHHhcCCCccCceEeCCHHHHH
Confidence 223466677666543 100 0112333 58999998 88888999999998888887 4665 7999999
Q ss_pred hhCCCCCcc----cceeEEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceee
Q psy10285 381 AKFPWLNTD----DIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNE 455 (673)
Q Consensus 381 ~~~p~~~~~----~~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~g 455 (673)
+.+|.+... ....+.+ .|.++++||..++..|.+.+++.|++++. ++|++|+.+++ + .
T Consensus 149 ~~eP~l~~~r~~~~~~gAl~-~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~-------------~---~ 211 (483)
T TIGR01320 149 EWLPLMAAGRDFSEPVAANW-AAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD-------------G---S 211 (483)
T ss_pred HhCCCcccCCCCCCceEEEE-eCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-------------C---e
Confidence 999988642 2344555 79999999999999999999999999995 59999987653 1 2
Q ss_pred EEEE---cCCCCeeEEecCEEEEcCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCC-eEEc
Q psy10285 456 CVVR---DEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTP-MVID 531 (673)
Q Consensus 456 v~V~---t~~G~~~~i~ad~VVlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~-~~~~ 531 (673)
|.+. +.+|+..+++||+||+|+|+|+..|++++|+.. ....++.|++|+.+.++.++....... ++..
T Consensus 212 v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~La~~~Gi~~--------~~~~~i~P~~Gq~l~l~~~~~~~~~~~~IY~v 283 (483)
T TIGR01320 212 WTVTVKNTRTGGKRTLNTRFVFVGAGGGALPLLQKSGIPE--------VKGFAGFPVSGLFLRCGNPELTEQHRAKVYGQ 283 (483)
T ss_pred EEEEEeeccCCceEEEECCEEEECCCcchHHHHHHcCCCc--------CCCCceeeeeEEEEEeCCHHHHhhcCeEEEec
Confidence 3343 334432469999999999999999999988641 013567899999887764422111111 2221
Q ss_pred C--CC-ceEEEecC-----Cce-EEecCCCC--C--CCCCC----CCCCCC------------C---hhHHH-------H
Q psy10285 532 T--TG-TYFRREGL-----GNY-YICGKSPT--P--EQEPP----VDNLDV------------D---YEYFN-------E 572 (673)
Q Consensus 532 ~--~~-~y~~~~~~-----~g~-~i~G~~~~--~--~~~~~----~~~~~~------------~---~~~~~-------~ 572 (673)
+ .. .|..|+.+ ++. +++|-+.. . ...-. ...+.. + ..... .
T Consensus 284 ~~p~~p~~~Vph~Dtr~i~G~~~~~~GP~A~~~~~~~reg~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~ 363 (483)
T TIGR01320 284 ASVGAPPMSVPHLDTRVVDGKKWLLFGPYAGWSPKFLKHGSILDLPLSIRPDNLLSMLGVGLTEMDLTKYLIGQLRKSEE 363 (483)
T ss_pred CCCCCCCcEEecCCCccccCCEEEEECcCCCcchHhhcCCchhHHhhcCCHhhHHHHHHHHHhhhHHHHHHHHHHHHhHH
Confidence 2 11 45665542 222 23564433 1 00000 000000 0 00000 1
Q ss_pred hHHHHHhhhccccccccccceeeeeccCC-CCC----------CCceeecCCCCCcEEE-EEccCCccccchhHHHHHHH
Q psy10285 573 NVWPHLAHRVKAFEELKVSNAWAGYYDFN-YFD----------ENAIIGLHPSYHNIHF-ATGFSGHGIQQAPAIGRAVS 640 (673)
Q Consensus 573 ~l~~~~~~~~P~l~~~~i~~~w~G~~~~~-t~d----------~~Piig~~~~~~~l~~-~~G~~g~G~~~ap~~g~~va 640 (673)
..++.+++++|.+..-.+.....|+|+.. ..| +..+|. ..++.++ +.+- +.|.+.+..+|+.|+
T Consensus 364 ~~~~~~~~~~p~~~~~d~~~~~~GiR~Q~i~~~~~~~~g~l~~g~~~i~---~~~~~~~~l~~~-SPgaTss~~i~~~v~ 439 (483)
T TIGR01320 364 ERVSALREFYPEAIDSDWELIVAGQRVQVIKKDPEKGGGVLEFGTTLIA---DADGSIAGLLGA-SPGASTAVSIMLDLL 439 (483)
T ss_pred HHHHHHHHhCCCCCHHHcEEccCceEEEEEecCCCCCcCEEecCCeEEE---CCCCeEEEecCC-CchHHhhHHHHHHHH
Confidence 22345677889887655566688888752 223 122332 2355555 4555 679999999999999
Q ss_pred HHHHc
Q psy10285 641 ELILD 645 (673)
Q Consensus 641 ~~i~~ 645 (673)
+....
T Consensus 440 ~~~~~ 444 (483)
T TIGR01320 440 ERCFP 444 (483)
T ss_pred HHHhH
Confidence 87653
No 28
>KOG3923|consensus
Probab=99.85 E-value=1.3e-19 Score=178.14 Aligned_cols=319 Identities=18% Similarity=0.210 Sum_probs=203.6
Q ss_pred cccEEEECCcHHHHHHHHHHHh----hccCCCeEEEEecCCCCCCCcccccccccccccCceecccC----cchhhHHHH
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKE----KVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFS----LRENIEMSL 315 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~----~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~----~~~~~~~~~ 315 (673)
..+|+|||+|++|+++|..|.+ ......+|+++.-+.. ...++...+|.+++... +....++.+
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~--------e~T~s~~~AGl~~p~~~~~~~~~~~~~w~k 74 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFT--------EDTTSDVAAGLFRPDLSDGTPQEINRQWGK 74 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCc--------cccccccccceeecccCCCCcHHHHHHHHH
Confidence 3689999999999999988873 1123478999987665 44556666777776542 223445555
Q ss_pred HHHHHHHHHHhhccccCCCCCCccee-ecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeE
Q psy10285 316 FGAEFLRNIKHHCHVIGEDEPDVNFT-PNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALA 394 (673)
Q Consensus 316 ~~~~~~~~l~~~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g 394 (673)
...+++..+.... ++...... -.|.....+ .. +.+........=..++.++.+++. .+|.... .|
T Consensus 75 ~tf~~l~~l~rs~-----~a~~aGV~l~sg~~ls~~-e~---~~~~~~~w~diV~~fr~l~e~EL~-~f~~~~~----~G 140 (342)
T KOG3923|consen 75 DTFNYLAHLARSE-----EAGEAGVCLVSGHILSDS-ES---LDDQQRSWGDIVYGFRDLTERELL-GFPDYST----YG 140 (342)
T ss_pred HHHHHHHHHhccc-----cccccceEEeeeeeeccC-CC---chhhhhhHHhhhhhhhcCCHHHhc-CCCCccc----cc
Confidence 5555565554311 11111111 122222212 21 222222223333456778887776 5553311 12
Q ss_pred EeccCCceeeCHHHHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEE
Q psy10285 395 CLGLEKEGWFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICV 474 (673)
Q Consensus 395 ~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VV 474 (673)
.. -.....++.+|+..|.+.+.++|+++...+|.+++.-. .-.+|.||
T Consensus 141 ~~--~Tt~~sE~~~ylpyl~k~l~e~Gvef~~r~v~~l~E~~------------------------------~~~~DViv 188 (342)
T KOG3923|consen 141 IH--FTTYLSEGPKYLPYLKKRLTENGVEFVQRRVESLEEVA------------------------------RPEYDVIV 188 (342)
T ss_pred ee--EEEeeccchhhhHHHHHHHHhcCcEEEEeeeccHHHhc------------------------------cCCCcEEE
Confidence 22 12334567899999999999999999999998886432 12589999
Q ss_pred EcCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEcCCCceEEEecCCceEEecCCCCC
Q psy10285 475 IAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDTTGTYFRREGLGNYYICGKSPTP 554 (673)
Q Consensus 475 lAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~i~G~~~~~ 554 (673)
+|||.|++.|+.- +. ++|.|||++.++.| ....-++.|....|++|-. +.+++|++...
T Consensus 189 NCtGL~a~~L~gD---------------d~-~yPiRGqVl~V~Ap---Wvkhf~~~D~~~ty~iP~~--~~V~lGg~~Q~ 247 (342)
T KOG3923|consen 189 NCTGLGAGKLAGD---------------DD-LYPIRGQVLKVDAP---WVKHFIYRDFSRTYIIPGT--ESVTLGGTKQE 247 (342)
T ss_pred ECCccccccccCC---------------cc-eeeccceEEEeeCC---ceeEEEEecCCccEEecCC--ceEEEcccccc
Confidence 9999999998631 22 89999999988865 2223333344446888873 55666655554
Q ss_pred CCCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCceeec--CC---CCCcEEEEEccCCccc
Q psy10285 555 EQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGL--HP---SYHNIHFATGFSGHGI 629 (673)
Q Consensus 555 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~--~~---~~~~l~~~~G~~g~G~ 629 (673)
.... .+...++. ..+++.+.++.|.|.+.++...|+|+||. . .+. -+.. .+ ...-|++..||||.|+
T Consensus 248 g~w~----~ei~~~D~-~dIl~rc~aL~P~l~~a~ii~E~vGlRP~-R-k~v-RlE~e~~~~~~k~~~VVHnYGHgG~G~ 319 (342)
T KOG3923|consen 248 GNWN----LEITDEDR-RDILERCCALEPSLRHAEIIREWVGLRPG-R-KQV-RLEAELRTRGGKRLTVVHNYGHGGNGF 319 (342)
T ss_pred Cccc----CcCChhhH-HHHHHHHHHhCcccccceehhhhhcccCC-C-Cce-eeeeeeecCCCccceeEeeccCCCCce
Confidence 3321 22233444 78889999999999999999999999985 2 222 1111 11 1122589999999999
Q ss_pred cchhHHHHHHHHHHHc
Q psy10285 630 QQAPAIGRAVSELILD 645 (673)
Q Consensus 630 ~~ap~~g~~va~~i~~ 645 (673)
++++++|-..+.++..
T Consensus 320 Tl~wGtAlea~~Lv~~ 335 (342)
T KOG3923|consen 320 TLGWGTALEAAKLVLD 335 (342)
T ss_pred ecccchHHHHHHHHHH
Confidence 9999999999988863
No 29
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.84 E-value=2.7e-18 Score=190.44 Aligned_cols=365 Identities=17% Similarity=0.112 Sum_probs=224.6
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccc--cccCceec-----ccCcc---hhhH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTT--LSVGGLRQ-----QFSLR---ENIE 312 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~--~~~g~i~~-----~~~~~---~~~~ 312 (673)
..+||+|||||++|+++|++|++ ...+.+|+|+||... .+..+|+ .|+|..+. .+... ...+
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~-~~~g~~V~VlEk~~~-------~a~~sS~~~~NaG~ghag~~e~~y~~~~~~g~~~ 75 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKE-LEPEWSITMFERLDG-------VALESSNGWNNAGTGHSALCELNYTPEKADGSID 75 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHH-hCCCCeEEEEEcCCc-------hhhhcCCCcCccccccccchhhcCCCCCCCCchh
Confidence 45899999999999999999982 235889999999865 2333333 34443322 22221 1122
Q ss_pred HH---------HHHHHHHHHHHhhccccCCCCCCcce-eecCeEEEe-ccchHHHHHHHHHHHHHcCC--cceee-CHhh
Q psy10285 313 MS---------LFGAEFLRNIKHHCHVIGEDEPDVNF-TPNGYLFCA-SQDGAATLEKNHQLQKELGA--KNVLL-GPEQ 378 (673)
Q Consensus 313 ~~---------~~~~~~~~~l~~~~~~~~~~~~~~~~-~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~--~~~~l-~~~~ 378 (673)
+. ..+.++|..+.+. +++. ....| .++|.+.++ ++++.+.+++.++.+++.|+ .++++ ++++
T Consensus 76 ~~~a~~~~~~~~~s~~~~~~l~~~-g~~~---~~~~~~~~~G~l~la~~e~e~~~l~~~~~~~~~~g~~~~~~~~~d~~e 151 (494)
T PRK05257 76 ISKAVKINEQFQISRQFWAYLVEK-GVLP---DPRSFINPVPHMSFVWGEDNVAFLKKRYEALKANPLFAGMEFSEDPAQ 151 (494)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCCC---CcccccccCCeEEEEECHHHHHHHHHHHHHHHhCCCCCCCEEeCCHHH
Confidence 21 3455666665432 1110 01223 578999888 88888889989888888886 46664 9999
Q ss_pred HHhhCCCCCc----ccceeEEeccCCceeeCHHHHHHHHHHHHHHcC-CeEEE-eceeEEEecCCccccccCCCCCCccc
Q psy10285 379 LKAKFPWLNT----DDIALACLGLEKEGWFDPWLYLNAVKKKAISLG-AEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHS 452 (673)
Q Consensus 379 ~~~~~p~~~~----~~~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~G-v~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~ 452 (673)
+++.+|.+.. +....+.+ .|.++.+|+..++..|.+.+++.| ++++. ++|++|+.+++ +.
T Consensus 152 l~e~eP~l~~~r~~~~~~~Al~-~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d-------------g~ 217 (494)
T PRK05257 152 IKEWAPLMMEGRDPSQKVAATR-IEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD-------------GS 217 (494)
T ss_pred HHHhCcccccCCCCCcceeEEE-cCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC-------------CC
Confidence 9999998742 23444555 789999999999999999999987 89985 59999988654 21
Q ss_pred eeeEEEE---cCCCCeeEEecCEEEEcCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCC--
Q psy10285 453 VNECVVR---DEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTP-- 527 (673)
Q Consensus 453 v~gv~V~---t~~G~~~~i~ad~VVlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~-- 527 (673)
|.|. +.+|+..+++|++||+|+|+|+..|++++|+.. ...+++.|++|+.+.++.+.... ...
T Consensus 218 ---~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~L~~~~Gi~~--------~~~~~i~PvrGq~l~~~~~~~v~-~~~~k 285 (494)
T PRK05257 218 ---WTVTVKDLKTGEKRTVRAKFVFIGAGGGALPLLQKSGIPE--------AKGYGGFPVSGQFLVCENPEVVA-QHHAK 285 (494)
T ss_pred ---EEEEEEEcCCCceEEEEcCEEEECCCcchHHHHHHcCCCc--------cCCCCeeeeeEEEEEcCCHHHHh-cCCeE
Confidence 3344 334532369999999999999999999988641 12457889999888776432110 111
Q ss_pred eEEcCC---CceEEEecCCce-------EEecCCCCCC----CC---------CCCCCC-------CCCh---hHHH---
Q psy10285 528 MVIDTT---GTYFRREGLGNY-------YICGKSPTPE----QE---------PPVDNL-------DVDY---EYFN--- 571 (673)
Q Consensus 528 ~~~~~~---~~y~~~~~~~g~-------~i~G~~~~~~----~~---------~~~~~~-------~~~~---~~~~--- 571 (673)
++..+. .-|..|+.+ .. +.+|-+.... .. -...++ ..+. ....
T Consensus 286 vY~~~~~~~P~~~vPh~d-tr~i~G~~~~~~GP~A~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 364 (494)
T PRK05257 286 VYGKASVGAPPMSVPHLD-TRVIDGKRSLLFGPFAGFSTKFLKNGSLLDLFSSVRPSNLLPMLAVGLDNFDLTKYLISQV 364 (494)
T ss_pred EecCCCCCCCCCCCCCCC-CcEECCceeEEECCCccccHHhccCCCHHHHHHhcCccccHHHHHHHhhhhHHHHHHHHHH
Confidence 111100 124444431 22 2222211100 00 000000 0000 0111
Q ss_pred ----HhHHHHHhhhccccccccccceeeeeccCC-CCC----CCceeec--CCCCCcEEE-EEccCCccccchhHHHHHH
Q psy10285 572 ----ENVWPHLAHRVKAFEELKVSNAWAGYYDFN-YFD----ENAIIGL--HPSYHNIHF-ATGFSGHGIQQAPAIGRAV 639 (673)
Q Consensus 572 ----~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~-t~d----~~Piig~--~~~~~~l~~-~~G~~g~G~~~ap~~g~~v 639 (673)
...++.+++++|.+....+....+|.|+.. ..| +....|. +...++.++ +.|- +.|.+.+..+++.|
T Consensus 365 ~~~~~~~~~~~~~~~p~~~~~d~~~~~aG~R~Q~i~~~~~~~g~L~~~~~~i~~~~~~~~~l~~~-SPgat~s~~i~~~v 443 (494)
T PRK05257 365 MLSDEDRFEALREFYPNAKPEDWELIVAGQRVQIIKKDPKKGGVLQFGTEVVSSADGSIAALLGA-SPGASTAVPIMLEV 443 (494)
T ss_pred hhCHHHHHHHHHHhCCCCCHHHceEcCCceEeEEEccCCCCCCEEECCcEEEecCCCeEEEEcCC-CchHHHHHHHHHHH
Confidence 234456778889886555555678888652 233 3344452 223456664 4555 68999999999999
Q ss_pred HHHHHcCC
Q psy10285 640 SELILDAE 647 (673)
Q Consensus 640 a~~i~~~~ 647 (673)
++.+....
T Consensus 444 ~~~~~~~~ 451 (494)
T PRK05257 444 LEKCFPDR 451 (494)
T ss_pred HHHhCHhh
Confidence 99876444
No 30
>KOG2665|consensus
Probab=99.72 E-value=2.6e-16 Score=155.51 Aligned_cols=361 Identities=16% Similarity=0.149 Sum_probs=234.6
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccC-cc--hhhHHHHHH
Q psy10285 241 FPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFS-LR--ENIEMSLFG 317 (673)
Q Consensus 241 ~~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~-~~--~~~~~~~~~ 317 (673)
....+|++|||+|+.|+..|..|..+ ..+.+|.++|+... .+...++.|.|.++.... .+ ...+++-.+
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lr-hp~l~V~vleke~~-------la~hqSghNSgViHaGIYY~P~SLKAklCV~G 116 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLR-HPSLKVAVLEKEKS-------LAVHQSGHNSGVIHAGIYYKPGSLKAKLCVEG 116 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhc-CCCceEEeeehhhh-------hceeecccccceeeeeeeeCCcccchhhhhcc
Confidence 45679999999999999999999832 45899999999876 355556666666654322 22 234667777
Q ss_pred HHHHHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCC-cceeeCHhhHHhhCCCCCcccceeEE
Q psy10285 318 AEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGA-KNVLLGPEQLKAKFPWLNTDDIALAC 395 (673)
Q Consensus 318 ~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~-~~~~l~~~~~~~~~p~~~~~~~~~g~ 395 (673)
.++.-+..++. .+.+.++|.+.++ .+.+...++..+..-.++++ .+++++..++.++.|.... ..+.
T Consensus 117 ~~LlY~yc~e~--------~IpyKk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~crg---vkAl 185 (453)
T KOG2665|consen 117 RELLYEYCDEK--------KIPYKKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCRG---VKAL 185 (453)
T ss_pred HHHHHHHhhhc--------CCChhhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhhh---hhhh
Confidence 77665555433 2457789999999 77777788888887777777 4789999999999987653 1233
Q ss_pred eccCCceeeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEE
Q psy10285 396 LGLEKEGWFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICV 474 (673)
Q Consensus 396 ~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VV 474 (673)
+ .|..|.+|...++..+.+.+...|.++.++ ++..+..+.++ + ++|. +.|....| .+++++.||
T Consensus 186 ~-sPhtGIvD~~~v~ls~~edF~~~gg~i~~n~~l~g~~~n~~~------~--~~Yp----ivv~ngk~--ee~r~~~~v 250 (453)
T KOG2665|consen 186 L-SPHTGIVDWGSVTLSFGEDFDFMGGRIYTNFRLQGIAQNKEA------T--FSYP----IVVLNGKG--EEKRTKNVV 250 (453)
T ss_pred c-CCCcceeehHHHHHHHHHHHHHhcccccccceeccchhccCC------C--CCCc----eEEecCcc--ceeEEeEEE
Confidence 4 699999999999999999999999999977 99999876640 0 1111 22333334 589999999
Q ss_pred EcCCCCcHHHHHHcCCC-CCcccccccccccCcceeeeeEEE---EeCCCCCCCCCCeEEcCCCceEEEecCCceEEecC
Q psy10285 475 IAAGAYSGQVARMLKIG-DKNQEQGFLFVPLPVEPRKRYVYC---FESPRGPGVNTPMVIDTTGTYFRREGLGNYYICGK 550 (673)
Q Consensus 475 lAtG~~s~~l~~~~g~~-~~~~~~~~~~~~lp~~~~r~~~~~---~~~~~~~~~~~~~~~~~~~~y~~~~~~~g~~i~G~ 550 (673)
-|+|.++..+....|.. +| ..-.+.+..+-+.|.|.+.+. ++.|+. ..|+ .++.+.|+. ++.+.+|.
T Consensus 251 tc~gl~sdr~aa~sgc~~dP-riVpfrG~ylll~~ek~h~vk~niyPvpd~---RFpf----lGvhftPrm-~g~iwlgp 321 (453)
T KOG2665|consen 251 TCAGLQSDRCAALSGCELDP-RIVPFRGEYLLLKPEKLHLVKGNIYPVPDP---RFPF----LGVHFTPRM-DGSIWLGP 321 (453)
T ss_pred EeccccHhHHHHHhCCCCCC-eeeeccchhhhcChHHhccccCceeeCCCC---CCcc----ccccccCcC-CCceecCC
Confidence 99999999999888754 22 222223333333333333221 112211 1222 134445553 33333331
Q ss_pred C-----------CCCC---------CCCCC-------CCCCCChhH---HHHhHHHHHhhhccccccccccceeeeeccC
Q psy10285 551 S-----------PTPE---------QEPPV-------DNLDVDYEY---FNENVWPHLAHRVKAFEELKVSNAWAGYYDF 600 (673)
Q Consensus 551 ~-----------~~~~---------~~~~~-------~~~~~~~~~---~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~ 600 (673)
. ..+. ..+.. -+..+++.. |.......++++.|.+++..+..-.+|+|..
T Consensus 322 navLa~kregy~~g~i~~~~~~e~i~~sg~~k~~~k~f~ygv~e~~k~~f~~aqvk~lqkyiPdlk~~di~rGpaGvRaq 401 (453)
T KOG2665|consen 322 NAVLAVKREGYLNGDISFGDLVEWIEYSGDTKLASKKFDYGVNEMYKEKFIAAQVKELQKYIPDLKDSDIERGPAGVRAQ 401 (453)
T ss_pred CceEEEEEEeeccccccccchhhheecCchHHHHHhhcCcccchHhhhhhhhhhhHHHHHhCccccccccccCcccccch
Confidence 1 1100 00000 011222222 2222337788899999999999999999843
Q ss_pred -CCCCCC----ceeec--CCCCCcEEEEEccCCccccchhHHHHHHHHHHH
Q psy10285 601 -NYFDEN----AIIGL--HPSYHNIHFATGFSGHGIQQAPAIGRAVSELIL 644 (673)
Q Consensus 601 -~t~d~~----Piig~--~~~~~~l~~~~G~~g~G~~~ap~~g~~va~~i~ 644 (673)
+..|+. +++.. -...+++.++-+.-+.|.+.+.++|+.+|+.+.
T Consensus 402 ald~~gnlv~DFVfd~g~g~~~p~llh~rnapSPgaTSSlAIa~mIa~k~~ 452 (453)
T KOG2665|consen 402 ALDGDGNLVDDFVFDGGEGHLVPRLLHVRNAPSPGATSSLAIAKMIADKFL 452 (453)
T ss_pred hccCCCCCchheEEecCccccccceEEecCCCCccchhhHHHHHHHHHHhc
Confidence 233332 33332 223488999999999999999999999998764
No 31
>KOG0042|consensus
Probab=99.70 E-value=3.6e-16 Score=164.70 Aligned_cols=351 Identities=19% Similarity=0.231 Sum_probs=214.6
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||||.+|.-||...+ -+|.+|.++|++.. .++.++.+|....|+++..- ....++.....++.+
T Consensus 66 ~~fDVLIIGGGAtGaGcALDA~---TRGLktaLVE~~DF----~SGTSSkSTKLiHGGVRYLe--kAi~~lD~~qyrlV~ 136 (680)
T KOG0042|consen 66 HEFDVLIIGGGATGAGCALDAA---TRGLKTALVEAGDF----ASGTSSKSTKLIHGGVRYLE--KAISNLDYEQYRLVK 136 (680)
T ss_pred CcccEEEECCCccCcceeehhh---cccceeEEEecccc----cCCccccchhhhcccHHHHH--HHHHhcCHHHHHHHH
Confidence 4589999999999999999999 89999999999988 22333444555567765321 111111111111111
Q ss_pred -HHHhhccccCCC-----CCCc-----ceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCccc
Q psy10285 323 -NIKHHCHVIGED-----EPDV-----NFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDD 390 (673)
Q Consensus 323 -~l~~~~~~~~~~-----~~~~-----~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~ 390 (673)
.+.+...+++.. .+.+ .|-+..+++.. .-.++ +.--+.+ -...+++.++..+.+|-++.+.
T Consensus 137 eaL~ER~~lle~APhLs~~lPImlPvy~wwQvpYyw~G~K~YD~------vAG~k~L-k~S~~lSk~~alE~fPmL~~~~ 209 (680)
T KOG0042|consen 137 EALNERANLLEIAPHLSQPLPIMLPVYKWWQVPYYWVGLKIYDL------VAGSKNL-KSSYFLSKKEALEIFPMLRKDN 209 (680)
T ss_pred HHHHHHHHHhhcCccccCCcceeeehhhhhhhhheeecceeeee------ecccccc-ccceeecHHHHHHhCccccccC
Confidence 111111100000 0000 00001111111 00000 0000000 1246889999999999999888
Q ss_pred ceeEEeccCCceeeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcC-CCCeeEE
Q psy10285 391 IALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE-KGELKTI 468 (673)
Q Consensus 391 ~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~-~G~~~~i 468 (673)
..+++.+ .+|+.|-.++.-.++-.+.++|+.+.|+ +|.++..+++ ++|.|+.++.. .|++..|
T Consensus 210 L~Ga~VY--yDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~-------------~kv~Ga~~rD~iTG~e~~I 274 (680)
T KOG0042|consen 210 LKGAMVY--YDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD-------------GKVIGARARDHITGKEYEI 274 (680)
T ss_pred ceeEEEE--ecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC-------------CceeeeEEEEeecCcEEEE
Confidence 8877764 4678888888888888889999999987 9999998886 77888777653 6777899
Q ss_pred ecCEEEEcCCCCcHHHHHHcCCCCCcccccccccccCcceeeeeEEEEe---CCCCCCCCCCeEEcCCCceEEEecCCce
Q psy10285 469 TFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFE---SPRGPGVNTPMVIDTTGTYFRREGLGNY 545 (673)
Q Consensus 469 ~ad~VVlAtG~~s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~---~~~~~~~~~~~~~~~~~~y~~~~~~~g~ 545 (673)
+|+.||+|||.++..+.+|-.-..+ + -+.|--|..+.++ +|...+...|--.|..-+|+.|+. |.
T Consensus 275 ~Ak~VVNATGpfsDsIr~Mdd~~~~---------~-i~~pSsGvHIVlP~yY~P~~mGlldP~TsDgRViFflPWq--g~ 342 (680)
T KOG0042|consen 275 RAKVVVNATGPFSDSIRKMDDEDAK---------P-ICVPSSGVHIVLPGYYCPENMGLLDPKTSDGRVIFFLPWQ--GK 342 (680)
T ss_pred EEEEEEeCCCCccHHHHhhcccccC---------c-eeccCCceeEEcccccCCcccccccCCCCCCcEEEEeccC--Cc
Confidence 9999999999999999876542211 1 1223344444444 233222222221222246888984 67
Q ss_pred EEecCCCCCCCCCCCCCCCCChhHHHHhHHHHHhhhcc---ccccccccceeeeeccCCCCCCCc-----------eeec
Q psy10285 546 YICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVK---AFEELKVSNAWAGYYDFNYFDENA-----------IIGL 611 (673)
Q Consensus 546 ~i~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P---~l~~~~i~~~w~G~~~~~t~d~~P-----------iig~ 611 (673)
.|.|+++.+...+. +..+.++++ +.++..++.++. .+....+...|+|+||. ..|-.+ +|..
T Consensus 343 TIaGTTD~pt~v~~--~P~PtE~dI-qfIL~ev~~yl~~~~~VrR~DVlsaWsGiRPL-v~DP~~~~~t~sl~R~H~v~~ 418 (680)
T KOG0042|consen 343 TIAGTTDIPTSVTH--SPTPTEDDI-QFILKEVQHYLSFDVEVRREDVLSAWSGIRPL-VRDPKKVKDTQSLVRNHFVFV 418 (680)
T ss_pred eeeccCCCCCCCCC--CCCCCHHHH-HHHHHHHHHhhCCCcccchhhhHHHhhCCccc-ccCCCccccchhhhhhceEEe
Confidence 78898887633221 122344566 778888888862 25566788999999987 655533 2221
Q ss_pred CCCCCcEEEEEccCCccccchhHHHHHHHHHHHc
Q psy10285 612 HPSYHNIHFATGFSGHGIQQAPAIGRAVSELILD 645 (673)
Q Consensus 612 ~~~~~~l~~~~G~~g~G~~~ap~~g~~va~~i~~ 645 (673)
+..|++.++|.- ++.--.+|+.-.+.+..
T Consensus 419 --~~~gLiTIaGGK---WTTyR~MAEeTVd~aI~ 447 (680)
T KOG0042|consen 419 --SPSGLITIAGGK---WTTYRHMAEETVDAAIK 447 (680)
T ss_pred --cCCCeEEEecCc---chhHHHHHHHHHHHHHH
Confidence 236788888764 77777777777766643
No 32
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=99.49 E-value=4.9e-13 Score=145.53 Aligned_cols=169 Identities=18% Similarity=0.175 Sum_probs=93.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecc-cc-----cccCcCCCCCCC---------------CCCCcc--
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD-FT-----VNYDLDEDGSNP---------------GDQESS-- 155 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~-~~-----~~~~~~~~~~~~---------------~~~~s~-- 155 (673)
..||+||||+|++|..+|+.|++. |++|+|||+. .. +..|.+++.... |.....
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa~~---G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~ 79 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAAQL---GLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPK 79 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC---CCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCC
Confidence 469999999999999999999999 9889999999 45 344445432111 100000
Q ss_pred ccccchhhcCCCcccccccCchHHHHHh-hcccccCCcc-CCCceEEEeeC-chhhHHHH----------Hhhhcccccc
Q psy10285 156 NDKDRISTSGQPTQESKVSDPHKALKET-TNRYSFNDAE-APSGYVDPAKT-DEHYHIKR----------AMRILKLDFQ 222 (673)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~g~l~v~~~-~~~~~~~~----------~~~~~g~~~~ 222 (673)
.++..+...... ....+......+.+. -.+++...+. ...+++.+... ...+.... .+...+++..
T Consensus 80 id~~~~~~~k~~-v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p~~~~~~~~~~~ 158 (454)
T COG1249 80 IDFEKLLARKDK-VVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRPRIPPGPGIDGA 158 (454)
T ss_pred cCHHHHHHHHHH-HHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCCcCCCCCCCCCC
Confidence 011111100000 000011111111111 1233333333 44556655442 01111111 1122234444
Q ss_pred ceeccCCCCcccccCCCCCCCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 223 KLWRNVQDPESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 223 ~~~~~~~~~~~~~~~~~l~~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+|.++.... +....++++|||+|++|++.|..++ +.|.+|+|+|+.+.
T Consensus 159 ~~~~s~~~l~-------~~~lP~~lvIiGgG~IGlE~a~~~~---~LG~~VTiie~~~~ 207 (454)
T COG1249 159 RILDSSDALF-------LLELPKSLVIVGGGYIGLEFASVFA---ALGSKVTVVERGDR 207 (454)
T ss_pred eEEechhhcc-------cccCCCEEEEECCCHHHHHHHHHHH---HcCCcEEEEecCCC
Confidence 4555544331 1234588999999999999999999 99999999999887
No 33
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=99.39 E-value=7.6e-11 Score=124.85 Aligned_cols=229 Identities=16% Similarity=0.196 Sum_probs=153.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcc---------hhhHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLR---------ENIEM 313 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~---------~~~~~ 313 (673)
..+||++||||+.+...++.|+ ++....+|.|+||........+.....+.....|.+...|... ....+
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~-~l~p~~~I~i~Erl~~~A~ESS~~wNNAGTGHaa~cElNYTpe~~dGsidi~KA~~I 80 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLK-ELEPDWSIAIFERLDSVALESSNAWNNAGTGHAALCELNYTPEKADGSIDISKAVKI 80 (488)
T ss_pred CceeEEEECchHHHHHHHHHHH-HhCCCCeEEEEEecCcchhhcCCCccccccchhhhhhccCCCCcCCCcccHHHHHHH
Confidence 4589999999999999999998 6678899999999776321111112222222223333333221 11111
Q ss_pred ---HHHHHHHHHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcC--Ccceee-CHhhHHhhCCCC
Q psy10285 314 ---SLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELG--AKNVLL-GPEQLKAKFPWL 386 (673)
Q Consensus 314 ---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g--~~~~~l-~~~~~~~~~p~~ 386 (673)
...+.+||..+.+.-. +.. .+-..++...+.+. .+++.+.+++.++.+++.. ..+++. +.+++.+..|.+
T Consensus 81 neqFevsrqfWs~lv~~g~-l~~--p~~FI~~~PHmsfv~Ge~~v~fLkkR~~~l~~~~lF~~Me~sed~~~i~~w~PLv 157 (488)
T PF06039_consen 81 NEQFEVSRQFWSYLVENGI-LQN--PESFINPVPHMSFVWGEENVDFLKKRYEALKEHPLFPGMEFSEDPEQIAEWAPLV 157 (488)
T ss_pred HHHHHHHHHHHHHHHHCCC-CCC--hHHhccCCCceEEEEChHhHHHHHHHHHHHhcCCCCCCcEEccCHHHHHhhCCee
Confidence 1334566776654322 110 11123345666665 7888899999999887643 345665 577888877765
Q ss_pred Ccc---cceeEEeccCCceeeCHHHHHHHHHHHHHHc-CCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEc-
Q psy10285 387 NTD---DIALACLGLEKEGWFDPWLYLNAVKKKAISL-GAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD- 460 (673)
Q Consensus 387 ~~~---~~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~-Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t- 460 (673)
-.. ....++.+.+.+.-+|-..+++.|.+.+.+. |++++ +++|++|.+.++| .|.|.+
T Consensus 158 m~gR~~~e~vAat~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg----------------~W~v~~~ 221 (488)
T PF06039_consen 158 MEGRDPSEPVAATRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDG----------------RWEVKVK 221 (488)
T ss_pred cCCCCCCCceeeeecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCC----------------CEEEEEE
Confidence 311 1122334467777899999999999999988 99998 5699999998762 477764
Q ss_pred --CCCCeeEEecCEEEEcCCCCcHHHHHHcCCC
Q psy10285 461 --EKGELKTITFAICVIAAGAYSGQVARMLKIG 491 (673)
Q Consensus 461 --~~G~~~~i~ad~VVlAtG~~s~~l~~~~g~~ 491 (673)
.+|+.++++|+.|++.+|+++-.|+.++|++
T Consensus 222 ~~~~~~~~~v~a~FVfvGAGG~aL~LLqksgi~ 254 (488)
T PF06039_consen 222 DLKTGEKREVRAKFVFVGAGGGALPLLQKSGIP 254 (488)
T ss_pred ecCCCCeEEEECCEEEECCchHhHHHHHHcCCh
Confidence 3455679999999999999999999999874
No 34
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.5e-13 Score=136.15 Aligned_cols=194 Identities=15% Similarity=0.210 Sum_probs=117.1
Q ss_pred hhHHHHHHhhhhhHhhhhhccCCCcccCCCC-CCCccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcC
Q psy10285 65 HIKRAMRILKLDFQKLWRNVQDPESRYQGNT-LFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLD 143 (673)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~ 143 (673)
..++.|.+.+....+++.++-.....+..+. .....|||+|||||+||.++|.++|+. |++.-|+-.+..
T Consensus 175 lnGe~fg~GRmtleeilaki~~gaa~~~ae~~~~k~~yDVLvVGgGPAgaaAAiYaARK---GiRTGl~aerfG------ 245 (520)
T COG3634 175 LNGEEFGQGRMTLEEILAKIDTGAAKRDAEEFNAKDAYDVLVVGGGPAGAAAAIYAARK---GIRTGLVAERFG------ 245 (520)
T ss_pred EcchhhcccceeHHHHHHHhcCCccccchHHhhccCCceEEEEcCCcchhHHHHHHHhh---cchhhhhhhhhC------
Confidence 3444444544444544544433222222121 222359999999999999999999999 888777655431
Q ss_pred CCCCCCCCCCccccccchhhcCCCcccccccCchHHHHHhhccc----c------cCCcc-CCCceEEEeeC-chhhHHH
Q psy10285 144 EDGSNPGDQESSNDKDRISTSGQPTQESKVSDPHKALKETTNRY----S------FNDAE-APSGYVDPAKT-DEHYHIK 211 (673)
Q Consensus 144 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~------~~~~~-~~~g~l~v~~~-~~~~~~~ 211 (673)
|+...... +.++- ......-...+.++.+.+.++ . ..... ...+.+.+... .+.++..
T Consensus 246 ------GQvldT~~--IENfI--sv~~teGpkl~~ale~Hv~~Y~vDimn~qra~~l~~a~~~~~l~ev~l~nGavLkak 315 (520)
T COG3634 246 ------GQVLDTMG--IENFI--SVPETEGPKLAAALEAHVKQYDVDVMNLQRASKLEPAAVEGGLIEVELANGAVLKAR 315 (520)
T ss_pred ------Ceeccccc--hhhee--ccccccchHHHHHHHHHHhhcCchhhhhhhhhcceecCCCCccEEEEecCCceeccc
Confidence 33333222 22211 111122222333333222111 0 00000 11222333222 1222222
Q ss_pred H-------HhhhccccccceeccCCCCcccccCCCCCCCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 212 R-------AMRILKLDFQKLWRNVQDPESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 212 ~-------~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
. +|+..+.+++.-+.+.++.+|++|+.+|+ +++||+|||||.+|.++|..|+ ..-.+|+++|-.+.
T Consensus 316 tvIlstGArWRn~nvPGE~e~rnKGVayCPHCDGPLF-~gK~VAVIGGGNSGvEAAIDLA---Giv~hVtllEF~~e 388 (520)
T COG3634 316 TVILATGARWRNMNVPGEDEYRNKGVAYCPHCDGPLF-KGKRVAVIGGGNSGVEAAIDLA---GIVEHVTLLEFAPE 388 (520)
T ss_pred eEEEecCcchhcCCCCchHHHhhCCeeeCCCCCCccc-CCceEEEECCCcchHHHHHhHH---hhhheeeeeecchh
Confidence 2 67888889998999999999999999998 8999999999999999999999 88899999997665
No 35
>PRK06116 glutathione reductase; Validated
Probab=99.38 E-value=1.1e-11 Score=137.50 Aligned_cols=41 Identities=24% Similarity=0.344 Sum_probs=35.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDL 142 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~ 142 (673)
.+|||+|||||++|+++|+.|+++ |++|+|||++....-|+
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~---G~~V~liE~~~~GG~c~ 43 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMY---GAKVALIEAKRLGGTCV 43 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC---CCeEEEEeccchhhhhh
Confidence 359999999999999999999999 99999999975544444
No 36
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=99.37 E-value=1.7e-11 Score=135.77 Aligned_cols=40 Identities=23% Similarity=0.380 Sum_probs=35.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDL 142 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~ 142 (673)
+|||+|||||++|+++|+.|+++ |++|+|+|++....-|.
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~---G~~V~lie~~~~GG~c~ 41 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH---GAKVAIAEEPRVGGTCV 41 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC---CCcEEEEecCccCceee
Confidence 49999999999999999999999 99999999976544444
No 37
>PRK06370 mercuric reductase; Validated
Probab=99.32 E-value=1.7e-11 Score=136.51 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=37.7
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcC
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLD 143 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~ 143 (673)
..+|||||||||++|+++|+.|++. |++|+|||++.....|++
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~---G~~v~lie~~~~GG~c~~ 45 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGL---GMKVALIERGLLGGTCVN 45 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC---CCeEEEEecCccCCceec
Confidence 3459999999999999999999999 999999999876555654
No 38
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=99.31 E-value=2.3e-11 Score=135.56 Aligned_cols=35 Identities=34% Similarity=0.506 Sum_probs=32.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..|||+|||||++|+++|+.|++. |++|+|||++.
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~---G~~v~liE~~~ 38 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL---GKRVAVIERYR 38 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC---CCEEEEEeccc
Confidence 359999999999999999999999 99999999963
No 39
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=99.31 E-value=5.4e-11 Score=131.75 Aligned_cols=40 Identities=30% Similarity=0.390 Sum_probs=35.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDL 142 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~ 142 (673)
+|||+|||||++|+++|+.|++. |++|+|||++....-|+
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~---G~~V~liE~~~~GG~c~ 41 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAEH---GAKALLVEAKKLGGTCV 41 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHHC---CCcEEEeccccccccee
Confidence 59999999999999999999999 99999999976644444
No 40
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=99.30 E-value=7.5e-11 Score=131.43 Aligned_cols=39 Identities=31% Similarity=0.494 Sum_probs=34.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDL 142 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~ 142 (673)
|||||||||++|+++|+.|++. |++|+|||++.....|.
T Consensus 2 yDvvVIG~G~aGl~aA~~la~~---G~~v~lie~~~~GG~~~ 40 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQL---GLKVALVEKEYLGGTCL 40 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHhC---CCeEEEEecCCCCCcee
Confidence 8999999999999999999999 99999999965544444
No 41
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=99.30 E-value=1.1e-10 Score=130.48 Aligned_cols=41 Identities=29% Similarity=0.357 Sum_probs=36.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDL 142 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~ 142 (673)
..||+||||||++|+++|..|+++ |++|+|||++....-|.
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa~~---G~~v~lie~~~~GG~c~ 43 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAGQL---GLKTALVEKGKLGGTCL 43 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC---CCeEEEEEccCCCcceE
Confidence 359999999999999999999999 99999999976544454
No 42
>PRK14694 putative mercuric reductase; Provisional
Probab=99.30 E-value=1.3e-10 Score=129.62 Aligned_cols=42 Identities=24% Similarity=0.411 Sum_probs=36.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcC
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLD 143 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~ 143 (673)
.+|||+|||||++|+++|..|++. |++|+|||++....-|++
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~---g~~v~lie~~~~GGtc~n 46 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER---GARVTLIERGTIGGTCVN 46 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC---CCcEEEEEccccccceec
Confidence 359999999999999999999999 999999999866444653
No 43
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.29 E-value=3.8e-11 Score=133.62 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=32.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..++|+|||+|.+|++.|..|+ +.|.+|+++|+.+.
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~---~~G~~Vtlie~~~~ 208 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWR---RLGAQVTVVEYLDR 208 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHH---HcCCeEEEEeCCCC
Confidence 4578999999999999999999 88999999998765
No 44
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.28 E-value=1.3e-10 Score=129.58 Aligned_cols=42 Identities=26% Similarity=0.408 Sum_probs=37.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCC
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDE 144 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~ 144 (673)
+|||+|||||++|+++|..|++. |++|+|||++.....|++.
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~~---G~~V~lie~~~~GG~c~~~ 45 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQL---GLKTAVVEKKYWGGVCLNV 45 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHhC---CCeEEEEecCCCCCceecC
Confidence 59999999999999999999999 9999999998665556554
No 45
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.28 E-value=8.6e-11 Score=129.99 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=32.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
+|||||||||++|+++|..|+++ |++|+|||++.
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~~---g~~V~liE~~~ 36 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLASA---GKKVALVEESK 36 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC---CCEEEEEecCC
Confidence 59999999999999999999999 99999999975
No 46
>PLN02507 glutathione reductase
Probab=99.28 E-value=7.9e-11 Score=131.88 Aligned_cols=33 Identities=27% Similarity=0.510 Sum_probs=31.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEec
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~ 134 (673)
.+||+||||||++|+.+|..|+++ |++|+|||+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~~---G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSANF---GAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHHC---CCeEEEEec
Confidence 369999999999999999999999 999999996
No 47
>PTZ00058 glutathione reductase; Provisional
Probab=99.28 E-value=6.5e-11 Score=133.37 Aligned_cols=42 Identities=26% Similarity=0.445 Sum_probs=36.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcC
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLD 143 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~ 143 (673)
.+|||||||||++|+++|+.|++. |++|+|||++....-|++
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~---G~~ValIEk~~~GGtCln 88 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARN---KAKVALVEKDYLGGTCVN 88 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc---CCeEEEEecccccccccc
Confidence 469999999999999999999999 999999999876444443
No 48
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=99.27 E-value=7.4e-11 Score=131.49 Aligned_cols=40 Identities=33% Similarity=0.370 Sum_probs=35.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcC
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLD 143 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~ 143 (673)
|||||||||++|+++|..|+++ |++|+|||++.....|++
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~---g~~v~lie~~~~GG~c~n 40 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL---GASVAMVERGPLGGTCVN 40 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC---CCeEEEEeCCcccCCeee
Confidence 7999999999999999999999 999999999876555553
No 49
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.27 E-value=5.2e-11 Score=132.68 Aligned_cols=41 Identities=27% Similarity=0.392 Sum_probs=36.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcC
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLD 143 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~ 143 (673)
.||+||||||++|+++|..|+++ |++|+|||++.....|++
T Consensus 4 ~yDvvVIGaGpaG~~aA~~aa~~---G~~V~liE~~~~GG~c~~ 44 (462)
T PRK06416 4 EYDVIVIGAGPGGYVAAIRAAQL---GLKVAIVEKEKLGGTCLN 44 (462)
T ss_pred cccEEEECCCHHHHHHHHHHHHC---CCcEEEEeccccccceee
Confidence 59999999999999999999999 999999999875444543
No 50
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=99.27 E-value=1.4e-10 Score=128.39 Aligned_cols=34 Identities=29% Similarity=0.512 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
.|||||||||++|+++|+.|+++ |++|+|||++.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~~---g~~V~lie~~~ 36 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAKA---GWRVALIEQSN 36 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHHC---CCeEEEEcCCC
Confidence 59999999999999999999999 99999999874
No 51
>PRK13748 putative mercuric reductase; Provisional
Probab=99.24 E-value=3.6e-10 Score=129.14 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=35.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDL 142 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~ 142 (673)
+|||||||||++|+++|.+|++. |++|+|||++....-|+
T Consensus 98 ~~DvvVIG~GpaG~~aA~~~~~~---G~~v~lie~~~~GG~c~ 137 (561)
T PRK13748 98 PLHVAVIGSGGAAMAAALKAVEQ---GARVTLIERGTIGGTCV 137 (561)
T ss_pred CCCEEEECcCHHHHHHHHHHHhC---CCeEEEEecCcceeecc
Confidence 59999999999999999999999 99999999986544444
No 52
>PRK14727 putative mercuric reductase; Provisional
Probab=99.23 E-value=6.2e-10 Score=124.43 Aligned_cols=41 Identities=22% Similarity=0.354 Sum_probs=35.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecc-cccccCc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD-FTVNYDL 142 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~-~~~~~~~ 142 (673)
.+||+||||||++|+++|+.|++. |++|+|||++ ....-|+
T Consensus 15 ~~~dvvvIG~G~aG~~~a~~~~~~---g~~v~~ie~~~~~GG~c~ 56 (479)
T PRK14727 15 LQLHVAIIGSGSAAFAAAIKAAEH---GARVTIIEGADVIGGCCV 56 (479)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEEccCcceeEec
Confidence 459999999999999999999999 9999999986 4433344
No 53
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=99.22 E-value=1.5e-09 Score=116.53 Aligned_cols=71 Identities=15% Similarity=0.153 Sum_probs=57.0
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC-
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY- 480 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~- 480 (673)
++-+.++.+.|.+.+++.|++++++ +|+++..++ +++.+ |.+.++....++||+||+|+|+|
T Consensus 259 Sv~G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~--------------~~v~~--V~t~~g~~~~l~AD~vVLAaGaw~ 322 (419)
T TIGR03378 259 SLLGIRLEEALKHRFEQLGGVMLPGDRVLRAEFEG--------------NRVTR--IHTRNHRDIPLRADHFVLASGSFF 322 (419)
T ss_pred CCcHHHHHHHHHHHHHHCCCEEEECcEEEEEEeeC--------------CeEEE--EEecCCccceEECCEEEEccCCCc
Confidence 4556899999999999999999976 999998776 45555 55555422489999999999999
Q ss_pred cHHHHHHcC
Q psy10285 481 SGQVARMLK 489 (673)
Q Consensus 481 s~~l~~~~g 489 (673)
++.|+..++
T Consensus 323 S~gL~a~l~ 331 (419)
T TIGR03378 323 SNGLVAEFD 331 (419)
T ss_pred CHHHHhhcC
Confidence 999987654
No 54
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=99.21 E-value=1.8e-10 Score=128.33 Aligned_cols=40 Identities=23% Similarity=0.348 Sum_probs=34.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc-ccccCc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF-TVNYDL 142 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~-~~~~~~ 142 (673)
+|||||||||++|+.+|..|+++ |++|+|||+.. ....|+
T Consensus 4 ~~DvvVIG~GpaG~~aA~~aa~~---G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 4 KTQVVVLGAGPAGYSAAFRAADL---GLETVCVERYSTLGGVCL 44 (471)
T ss_pred cceEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCccccccc
Confidence 59999999999999999999999 99999999864 333344
No 55
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=99.21 E-value=3.4e-09 Score=110.37 Aligned_cols=194 Identities=19% Similarity=0.156 Sum_probs=106.5
Q ss_pred eeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 402 GWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 402 g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
..++...+.+.|.+.+.+.|++++. ++|+++..+++ ++.+...++. .++++|.||+|+|.+
T Consensus 86 ~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~-----------------~~~~~~~~~~-~~~~a~~vv~a~G~~ 147 (295)
T TIGR02032 86 YVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDD-----------------RVVVIVRGGE-GTVTAKIVIGADGSR 147 (295)
T ss_pred EEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCC-----------------EEEEEEcCcc-EEEEeCEEEECCCcc
Confidence 3466778889999999999999985 58999987663 3333332221 489999999999998
Q ss_pred cHHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCC-C-CCeEEc-----CCCceEEEecCCceEEecCCCC
Q psy10285 481 SGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGV-N-TPMVID-----TTGTYFRREGLGNYYICGKSPT 553 (673)
Q Consensus 481 s~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~-~-~~~~~~-----~~~~y~~~~~~~g~~i~G~~~~ 553 (673)
+. +.+.+++... +.....+....+..+..... + ..++.. ....|+.|.. ++.+.+|....
T Consensus 148 s~-~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~-~~~~~v~~~~~ 214 (295)
T TIGR02032 148 SI-VAKKLGLRKE-----------PRELGVAARAEVEMPDEEVDEDFVEVYIDRGISPGGYGWVFPKG-DGTANVGVGSR 214 (295)
T ss_pred hH-HHHhcCCCCC-----------CcceeeEEEEEEecCCcccCcceEEEEcCCCcCCCceEEEEeCC-CCeEEEeeeec
Confidence 74 6666654310 11111222223332211110 1 112221 1346778874 45554443222
Q ss_pred CCCCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCceeecCCCCCcEEEEEc-------cCC
Q psy10285 554 PEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATG-------FSG 626 (673)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~~~G-------~~g 626 (673)
... .. . .. ++.++...+.+|.+...++...+.+.++. .....+. ..+|++++.= +.|
T Consensus 215 ~~~----~~--~---~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~-----~~~~v~liGDAA~~~~P~~g 278 (295)
T TIGR02032 215 SAE----EG--E---DL-KKYLKDFLARRPELKDAETVEVIGAPIPI-GRPDDKT-----VRGNVLLVGDAAGHVKPLTG 278 (295)
T ss_pred cCC----CC--C---CH-HHHHHHHHHhCcccccCcEEeeeceeecc-CCCCCcc-----ccCCEEEEecccCCCCCccC
Confidence 111 01 1 11 34444455667777666666656655443 2111111 1245555433 678
Q ss_pred ccccchhHHHHHHHHH
Q psy10285 627 HGIQQAPAIGRAVSEL 642 (673)
Q Consensus 627 ~G~~~ap~~g~~va~~ 642 (673)
.|+.+|.--|..+|+.
T Consensus 279 ~G~~~a~~~a~~aa~~ 294 (295)
T TIGR02032 279 EGIYYAMRSGDVAAEV 294 (295)
T ss_pred CcHHHHHHHHHHHHhh
Confidence 8888888888887764
No 56
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=99.20 E-value=5.7e-10 Score=124.52 Aligned_cols=33 Identities=30% Similarity=0.490 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~ 135 (673)
+||+||||||++|+.+|+.|++. |++|+|||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~---G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY---GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC---CCeEEEEecc
Confidence 48999999999999999999999 9999999973
No 57
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=4.7e-11 Score=124.00 Aligned_cols=161 Identities=20% Similarity=0.243 Sum_probs=95.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCce-EEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCcccc--cccC
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCR-VAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPTQES--KVSD 175 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~-v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~--~~~~ 175 (673)
+.|||+|||||||||+||+++++. +++ ++|+|+... +....... ...++.+.+.... .+..
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~---~l~~~li~~~~~~------------gg~~~~~~-~venypg~~~~~~g~~L~~ 65 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA---GLKVVLILEGGEP------------GGQLTKTT-DVENYPGFPGGILGPELME 65 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc---CCCcEEEEecCCc------------CCccccce-eecCCCCCccCCchHHHHH
Confidence 359999999999999999999999 988 777777643 32222111 2333333332111 0111
Q ss_pred chHHHHHhh-cccccCCcc--CCCc-eEEEeeCchhhHHHH-------Hhhhccccc-cceeccCCCCcccccCCCCCCC
Q psy10285 176 PHKALKETT-NRYSFNDAE--APSG-YVDPAKTDEHYHIKR-------AMRILKLDF-QKLWRNVQDPESRYQGNTLFPT 243 (673)
Q Consensus 176 ~~~~~~~~~-~~~~~~~~~--~~~g-~l~v~~~~~~~~~~~-------~~~~~g~~~-~~~~~~~~~~~~~~~~~~l~~~ 243 (673)
......... .++...... ...+ .+.+..+...+.... .....+.+. ..+|- +...+|..|+. + .+
T Consensus 66 ~~~~~a~~~~~~~~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~~~~~~~~e~e~~g-~gv~yc~~cdg-~-~~ 142 (305)
T COG0492 66 QMKEQAEKFGVEIVEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGARKLGVPGEEEFEG-KGVSYCATCDG-F-FK 142 (305)
T ss_pred HHHHHHhhcCeEEEEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcccCCCCCcchhhcC-CceEEeeecCc-c-cc
Confidence 111111111 111111111 2333 444544443333332 112223322 23454 77788888877 4 47
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+++|+|||+|.++...|++|+ ..+.+|+++-|+..
T Consensus 143 ~k~v~ViGgG~sAve~Al~L~---~~a~~Vtlv~r~~~ 177 (305)
T COG0492 143 GKDVVVIGGGDSAVEEALYLS---KIAKKVTLVHRRDE 177 (305)
T ss_pred CCeEEEEcCCHHHHHHHHHHH---HhcCeEEEEecCcc
Confidence 779999999999999999999 88999999999887
No 58
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=99.18 E-value=2.7e-10 Score=127.25 Aligned_cols=33 Identities=27% Similarity=0.468 Sum_probs=31.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEec
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~ 134 (673)
..||++|||||++|+++|+.|++. |++|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~---g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL---GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC---CCeEEEEec
Confidence 359999999999999999999999 999999998
No 59
>PRK06185 hypothetical protein; Provisional
Probab=99.17 E-value=2.1e-09 Score=117.78 Aligned_cols=72 Identities=19% Similarity=0.260 Sum_probs=53.6
Q ss_pred eCHHHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 404 FDPWLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
+....+.+.|.+.+.+. |++++. ++|+++..++ +++.++.+.+.+|+ .+++||.||.|.|.++
T Consensus 105 v~~~~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~--------------~~v~~v~~~~~~g~-~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 105 MPQWDFLDFLAEEASAYPNFTLRMGAEVTGLIEEG--------------GRVTGVRARTPDGP-GEIRADLVVGADGRHS 169 (407)
T ss_pred eehHHHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC--------------CEEEEEEEEcCCCc-EEEEeCEEEECCCCch
Confidence 44456778888887764 899985 5999998776 45666666665663 4799999999999998
Q ss_pred HHHHHHcCCC
Q psy10285 482 GQVARMLKIG 491 (673)
Q Consensus 482 ~~l~~~~g~~ 491 (673)
. +.+.+++.
T Consensus 170 ~-vr~~~gi~ 178 (407)
T PRK06185 170 R-VRALAGLE 178 (407)
T ss_pred H-HHHHcCCC
Confidence 5 66777754
No 60
>PLN02697 lycopene epsilon cyclase
Probab=99.16 E-value=8e-09 Score=115.35 Aligned_cols=201 Identities=15% Similarity=0.161 Sum_probs=111.9
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCCCCccceeeEE-EEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECV-VRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~-V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
.++...+.+.|.+.+.+.|++++.++|+++..+++ ++. +.+.+| .+++|+.||.|+|.++
T Consensus 188 ~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~-----------------~~~vv~~~dG--~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 188 RVSRTLLHEELLRRCVESGVSYLSSKVDRITEASD-----------------GLRLVACEDG--RVIPCRLATVASGAAS 248 (529)
T ss_pred EEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCC-----------------cEEEEEEcCC--cEEECCEEEECCCcCh
Confidence 57788899999999999999998789999987653 222 345566 4899999999999999
Q ss_pred HHHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEc----------------CCCceEEEecCCce
Q psy10285 482 GQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVID----------------TTGTYFRREGLGNY 545 (673)
Q Consensus 482 ~~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~----------------~~~~y~~~~~~~g~ 545 (673)
..++..... ....+.+...|+.+.+..+... .+..+++| +.+.|+.|.++ +.
T Consensus 249 ~rl~~~~~~----------~~~~~~Q~a~Gi~ve~~~~~~d-~~~~vlMD~r~~~~~~~~~~~~~~p~FlYvlP~~~-~~ 316 (529)
T PLN02697 249 GRLLQYEVG----------GPRVCVQTAYGVEVEVENNPYD-PSLMVFMDYRDYFKEKVSHLEAEYPTFLYAMPMSS-TR 316 (529)
T ss_pred hhhhccccC----------CCCcccEEEEEEEEEecCCCCC-cchheeeccccccccccccccCCCceEEEEeecCC-Ce
Confidence 655431100 0123455666766655532211 12334444 13468888863 55
Q ss_pred EEe-cCCCCCCCCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCC------CCCceeecCCCCCcE
Q psy10285 546 YIC-GKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYF------DENAIIGLHPSYHNI 618 (673)
Q Consensus 546 ~i~-G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~------d~~Piig~~~~~~~l 618 (673)
+++ +. ..... +. ...+.+.+.+.+.+.++ ++...++...-.|+.|+ .. ++...||-- .++
T Consensus 317 ~~VE~T-~l~~~-~~-----l~~~~l~~~L~~~l~~~--Gi~~~~i~~~E~g~iPm-~g~~~~~~~~vl~vG~A---AG~ 383 (529)
T PLN02697 317 VFFEET-CLASK-DA-----MPFDLLKKRLMSRLETM--GIRILKTYEEEWSYIPV-GGSLPNTEQKNLAFGAA---ASM 383 (529)
T ss_pred EEEEEe-eeccC-CC-----CCHHHHHHHHHHHHHhC--CCCcceEEEEEeeeecC-CCCCcccCCCeeEeehh---hcC
Confidence 555 33 21111 10 11233334444444433 34445666666666665 22 122222211 222
Q ss_pred EE-EEccC-CccccchhHHHHHHHHHHHcCC
Q psy10285 619 HF-ATGFS-GHGIQQAPAIGRAVSELILDAE 647 (673)
Q Consensus 619 ~~-~~G~~-g~G~~~ap~~g~~va~~i~~~~ 647 (673)
+. ++|++ ..++..|+.+|+.+++.+..+.
T Consensus 384 vhPsTGy~v~~~l~~A~~~A~~ia~~l~~~~ 414 (529)
T PLN02697 384 VHPATGYSVVRSLSEAPKYASVIARILKNVS 414 (529)
T ss_pred CCCchhhhHHHHHHhHHHHHHHHHHHhhCCc
Confidence 22 23331 1223778888888888886543
No 61
>PLN02546 glutathione reductase
Probab=99.15 E-value=1.2e-09 Score=123.19 Aligned_cols=32 Identities=28% Similarity=0.468 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEec
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~ 134 (673)
+|||+|||+|++|+.+|..|+++ |++|+|||+
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~---G~~V~liE~ 110 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNF---GASAAVCEL 110 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC---CCeEEEEec
Confidence 59999999999999999999999 999999996
No 62
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.15 E-value=2.2e-09 Score=118.24 Aligned_cols=69 Identities=20% Similarity=0.208 Sum_probs=51.0
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
.+.-..+-..|.+.+++.|++++. ++|++++.+++ ++.+ +.+ +| .+++||.||.|+|..+
T Consensus 104 ~v~R~~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g--------------~v~~--v~~-~g--~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 104 SVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDG--------------KVVG--VEA-DG--DVIEAKTVILADGVNS 164 (428)
T ss_pred eeEHHHHHHHHHHHHHHCCCEEECCCEEEEEEEeCC--------------EEEE--EEc-CC--cEEECCEEEEEeCCCH
Confidence 345567888899999999999995 48999887652 3322 443 44 2799999999999864
Q ss_pred HHHHHHcCCC
Q psy10285 482 GQVARMLKIG 491 (673)
Q Consensus 482 ~~l~~~~g~~ 491 (673)
.+.+.+++.
T Consensus 165 -~l~~~lgl~ 173 (428)
T PRK10157 165 -ILAEKLGMA 173 (428)
T ss_pred -HHHHHcCCC
Confidence 677777754
No 63
>PTZ00052 thioredoxin reductase; Provisional
Probab=99.14 E-value=1.8e-09 Score=121.06 Aligned_cols=32 Identities=34% Similarity=0.509 Sum_probs=30.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEec
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~ 134 (673)
.|||+|||||++|+++|..|+++ |++|+|||+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~---G~~V~lie~ 36 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH---GKKVALFDY 36 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC---CCeEEEEec
Confidence 48999999999999999999999 999999996
No 64
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=99.13 E-value=6.7e-10 Score=123.74 Aligned_cols=40 Identities=25% Similarity=0.353 Sum_probs=34.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDL 142 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~ 142 (673)
.|||||||||++|+++|..|++. |++|+|||++.....|.
T Consensus 3 ~yDvvIIG~G~aGl~aA~~l~~~---g~~v~lie~~~~GG~~~ 42 (460)
T PRK06292 3 KYDVIVIGAGPAGYVAARRAAKL---GKKVALIEKGPLGGTCL 42 (460)
T ss_pred cccEEEECCCHHHHHHHHHHHHC---CCeEEEEeCCcccccee
Confidence 49999999999999999999999 99999999965433343
No 65
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=99.13 E-value=1.6e-09 Score=120.83 Aligned_cols=35 Identities=29% Similarity=0.417 Sum_probs=31.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~ 135 (673)
++|||||||||++|..+|..++++. |++|+|||++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~--g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLY--KKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhc--CCEEEEEecc
Confidence 3599999999999999999999952 7999999973
No 66
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=99.13 E-value=1.3e-09 Score=121.34 Aligned_cols=40 Identities=28% Similarity=0.409 Sum_probs=34.9
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCC
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDE 144 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~ 144 (673)
+|||||||++|+++|..|++. |++|+|||++....-|++.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~---g~~V~lie~~~~GG~c~n~ 41 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN---GKNVTLIDEADLGGTCLNE 41 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC---CCcEEEEECCcccccCCCC
Confidence 799999999999999999999 9999999998765445533
No 67
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.12 E-value=3.5e-10 Score=124.39 Aligned_cols=200 Identities=19% Similarity=0.207 Sum_probs=106.5
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcch-hhHHHHHHHHHHHHH
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRE-NIEMSLFGAEFLRNI 324 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~-~~~~~~~~~~~~~~l 324 (673)
||+|||+|.+|+.+|+.++ +.|.+|+||||.+. .++++..+.|.+........ ..........++.++
T Consensus 1 DVvVIG~G~AGl~AA~~Aa---e~G~~V~lvek~~~--------~gg~~~~s~g~~~~~~~~~~~~~~~~d~~~~~~~~~ 69 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAA---EAGAKVLLVEKGPR--------LGGSSAFSSGGFDAAGTPPQREAGIEDSPEEFFQDI 69 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHH---HTTT-EEEEESSSG--------GGSGGGGTCSEEEESSSHSSHHTTTTCHHHHHHHHH
T ss_pred CEEEECCCHHHHHHHHHHh---hhcCeEEEEEeecc--------cccccccccCceeeecccccccccccccccccceee
Confidence 7999999999999999999 89999999999987 33455555555543221110 000000111222222
Q ss_pred HhhccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhH-HhhCCCCCcccceeEEeccC---C
Q psy10285 325 KHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQL-KAKFPWLNTDDIALACLGLE---K 400 (673)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~g~~~~~---~ 400 (673)
.+... .. .+..+ -....+...+.++++.+.|+++..-..... ....+..... ........ .
T Consensus 70 ~~~~~---~~-~~~~~---------~~~~~~~~~~~~~~l~~~g~~~~~~~~g~~~~~~~g~~~~~--~~~~~~~~~~~~ 134 (417)
T PF00890_consen 70 MAAGG---GL-NDPDL---------VRAFVENSPEAIDWLEELGVPFRRDEDGPFAPTPFGGHSPR--WRSPPGNPDPPF 134 (417)
T ss_dssp HHHTT---T--S-HHH---------HHHHHHHHHHHHHHHHHTT--B-BGTTSSBCEEEETTESST--EEEEESSTTSSS
T ss_pred ecccc---cc-cccch---------hhhhhhcccceehhhhhhcccccccccccccccccCCcccc--ceeeeccccccc
Confidence 22211 00 00000 111122334455566677765444100000 0000000000 00111011 1
Q ss_pred ceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEEecCEEEEcCC
Q psy10285 401 EGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTITFAICVIAAG 478 (673)
Q Consensus 401 ~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i~ad~VVlAtG 478 (673)
........++..|.+.+++.|++|+. ++|++|..++ ++|.++.+. ..+|+...++|+.||+|||
T Consensus 135 ~~~~~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~--------------g~V~Gv~~~~~~~g~~~~i~A~aVIlAtG 200 (417)
T PF00890_consen 135 GGLGGGKALIEALAKAAEEAGVDIRFNTRVTDLITED--------------GRVTGVVAENPADGEFVRIKAKAVILATG 200 (417)
T ss_dssp HCCCHHHHHHHHHHHHHHHTTEEEEESEEEEEEEEET--------------TEEEEEEEEETTTCEEEEEEESEEEE---
T ss_pred cccccHHHHHHHHHHHHhhcCeeeeccceeeeEEEeC--------------CceeEEEEEECCCCeEEEEeeeEEEeccC
Confidence 12234578899999999999999995 6999999976 799998887 3567667899999999999
Q ss_pred CCcHHHH
Q psy10285 479 AYSGQVA 485 (673)
Q Consensus 479 ~~s~~l~ 485 (673)
++...++
T Consensus 201 G~~~~~~ 207 (417)
T PF00890_consen 201 GFGGELL 207 (417)
T ss_dssp -BGGHHH
T ss_pred ccccccc
Confidence 9997333
No 68
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=99.10 E-value=2.1e-08 Score=108.53 Aligned_cols=190 Identities=14% Similarity=0.156 Sum_probs=113.7
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
.++...+-+.+.+.+...|+.++++.|++|+.+++ ++.|.+.+|. +++|+.||.|.|..+.
T Consensus 83 ~i~~~~f~~~l~~~~~~~~~~~~~~~V~~i~~~~~-----------------~~~v~~~~g~--~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 83 MIDRADFYEFLLERAAAGGVIRLNARVTSIEETGD-----------------GVLVVLADGR--TIRARVVVDARGPSSP 143 (374)
T ss_pred EEEHHHHHHHHHHHhhhCCeEEEccEEEEEEecCc-----------------eEEEEECCCC--EEEeeEEEECCCcccc
Confidence 57778888999999886666666789999998874 5668888884 8999999999995443
Q ss_pred HHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEc---------CCCceEEEecCCceEEecCCCC
Q psy10285 483 QVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVID---------TTGTYFRREGLGNYYICGKSPT 553 (673)
Q Consensus 483 ~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~---------~~~~y~~~~~~~g~~i~G~~~~ 553 (673)
... ....+...|..+.++.|. -..+.+.++| +.+.|+.|.+ .+..++..|..
T Consensus 144 -~~~----------------~~~~Q~f~G~~v~~~~~~-f~~~~~~lMD~r~~~~~~~~~F~Y~lP~~-~~~alvE~T~f 204 (374)
T PF05834_consen 144 -KAR----------------PLGLQHFYGWEVETDEPV-FDPDTATLMDFRVPQSADGPSFLYVLPFS-EDRALVEETSF 204 (374)
T ss_pred -ccc----------------ccccceeEEEEEeccCCC-CCCCceEEEEecccCCCCCceEEEEEEcC-CCeEEEEEEEE
Confidence 111 111233344444333321 1112333332 1357889996 45666665544
Q ss_pred CCCCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCC-CceeecCCCCCcEEEEEc--------c
Q psy10285 554 PEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDE-NAIIGLHPSYHNIHFATG--------F 624 (673)
Q Consensus 554 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~-~Piig~~~~~~~l~~~~G--------~ 624 (673)
....+ ...+.+.+.+.+.+.+ -++...++...-.|+.|+ +... .+... +++ +..| .
T Consensus 205 s~~~~------~~~~~~~~~l~~~l~~--~g~~~~~i~~~E~G~IPm-~~~~~~~~~~-----~~v-~~iG~agG~v~Ps 269 (374)
T PF05834_consen 205 SPRPA------LPEEELKARLRRYLER--LGIDDYEILEEERGVIPM-TTGGFPPRFG-----QRV-IRIGTAGGMVKPS 269 (374)
T ss_pred cCCCC------CCHHHHHHHHHHHHHH--cCCCceeEEEeecceeec-ccCCCccccC-----CCe-eeEEccccCCCCc
Confidence 33221 1124444555555555 356677888888998886 3222 22222 122 2222 1
Q ss_pred CCccccchhHHHHHHHHHHHc
Q psy10285 625 SGHGIQQAPAIGRAVSELILD 645 (673)
Q Consensus 625 ~g~G~~~ap~~g~~va~~i~~ 645 (673)
+|.+|..+.-.++.+|+.+..
T Consensus 270 TGYs~~~~~~~a~~ia~~l~~ 290 (374)
T PF05834_consen 270 TGYSFARIQRQADAIADALAK 290 (374)
T ss_pred ccHHHHHHHHHHHHHHHHHhh
Confidence 234566777778888888875
No 69
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.10 E-value=1.1e-09 Score=122.94 Aligned_cols=188 Identities=15% Similarity=0.105 Sum_probs=109.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcch-hhHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRE-NIEMSLFGAEFL 321 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~-~~~~~~~~~~~~ 321 (673)
..+||+|||+|.+|+.+|+.++ +.|.+|+||||.+. .++++..+.|++........ .........+++
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa---~~Ga~VivlEK~~~--------~GG~s~~s~Gg~~~~~~~~~~~~g~~d~~~~~~ 128 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAK---DAGMNPVILEKMPV--------AGGNTMKASSGMNASETKFQKAQGIADSNDKFY 128 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHH---HCCCCEEEEECCCC--------CCCcccccCCccccCChHHHHhcCCCCCHHHHH
Confidence 5689999999999999999999 88999999999887 23444444444432111000 000000011223
Q ss_pred HHHHhhccccCCCCCCcceeecCeEEEeccchHH----HHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEec
Q psy10285 322 RNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAA----TLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLG 397 (673)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~ 397 (673)
+++.+... . ..+++-.. .....++++.++|+++..+.. ...... ...+
T Consensus 129 ~~~~~~~~----------~-------~~d~~l~~~~~~~s~~~i~wl~~~Gv~~~~~~~------~~g~~~----~r~~- 180 (506)
T PRK06481 129 EETLKGGG----------G-------TNDKALLRYFVDNSASAIDWLDSMGIKLDNLTI------TGGMSE----KRTH- 180 (506)
T ss_pred HHHHHhcC----------C-------CCCHHHHHHHHhccHHHHHHHHHcCceEeeccc------CCCCCC----Ccee-
Confidence 33221110 0 00111011 112334566667766443210 000000 0111
Q ss_pred cCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEc
Q psy10285 398 LEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIA 476 (673)
Q Consensus 398 ~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlA 476 (673)
.+..+......++..|.+.+++.|++++. ++|++|..++ ++|.++.+...+|+..++.||.||+|
T Consensus 181 ~p~~g~~~g~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~--------------g~V~Gv~~~~~~g~~~~i~a~~VVlA 246 (506)
T PRK06481 181 RPHDGSAVGGYLVDGLLKNVQERKIPLFVNADVTKITEKD--------------GKVTGVKVKINGKETKTISSKAVVVT 246 (506)
T ss_pred ccCCCCCChHHHHHHHHHHHHHcCCeEEeCCeeEEEEecC--------------CEEEEEEEEeCCCeEEEEecCeEEEe
Confidence 13333444567888999999999999985 5999998654 67888877766655567999999999
Q ss_pred CCCCcHH
Q psy10285 477 AGAYSGQ 483 (673)
Q Consensus 477 tG~~s~~ 483 (673)
+|+|...
T Consensus 247 tGG~~~n 253 (506)
T PRK06481 247 TGGFGAN 253 (506)
T ss_pred CCCcccC
Confidence 9988753
No 70
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.09 E-value=3.5e-09 Score=110.26 Aligned_cols=173 Identities=25% Similarity=0.281 Sum_probs=104.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
+.+||+|||||.+|++||..++ +.|++|+|+|+.+.. +.-- ..++|+ +.++..... ..+++.
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa---~~G~~V~lid~~~k~-------GrKi-l~sGgG-rCN~Tn~~~------~~~~ls 63 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAA---KAGRRVLLIDKGPKL-------GRKI-LMSGGG-RCNFTNSEA------PDEFLS 63 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHh---hcCCEEEEEecCccc-------ccee-EecCCC-Ccccccccc------HHHHHH
Confidence 3579999999999999999999 899999999998872 1110 011111 111111100 011111
Q ss_pred HHHhhccccCCCCCCcceeecCeE-EEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCC
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYL-FCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEK 400 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~-~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~ 400 (673)
+.. ..+.. .-+ .... -+..+.+...+|+.+..-+ .|-+ +|.
T Consensus 64 ~~p----------------~~~~fl~sal~~ft---~~d~i~~~e~~Gi~~~e~~-----------------~Gr~-Fp~ 106 (408)
T COG2081 64 RNP----------------GNGHFLKSALARFT---PEDFIDWVEGLGIALKEED-----------------LGRM-FPD 106 (408)
T ss_pred hCC----------------CcchHHHHHHHhCC---HHHHHHHHHhcCCeeEEcc-----------------Ccee-cCC
Confidence 111 00000 000 0111 1223344445665433321 1222 122
Q ss_pred ceeeCHHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCC
Q psy10285 401 EGWFDPWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479 (673)
Q Consensus 401 ~g~i~~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~ 479 (673)
. -....++..|++.+++.||+++ +++|.+|..++. +..+.+++|+ +++||.+|+|+|+
T Consensus 107 s--dkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-----------------~f~l~t~~g~--~i~~d~lilAtGG 165 (408)
T COG2081 107 S--DKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-----------------GFRLDTSSGE--TVKCDSLILATGG 165 (408)
T ss_pred c--cchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-----------------eEEEEcCCCC--EEEccEEEEecCC
Confidence 1 1236789999999999999999 569999998874 6789999994 8999999999995
Q ss_pred CcH----------HHHHHcCCC
Q psy10285 480 YSG----------QVARMLKIG 491 (673)
Q Consensus 480 ~s~----------~l~~~~g~~ 491 (673)
.|- .+++.+|+.
T Consensus 166 ~S~P~lGstg~gy~iA~~~G~~ 187 (408)
T COG2081 166 KSWPKLGSTGFGYPIARQFGHT 187 (408)
T ss_pred cCCCCCCCCchhhHHHHHcCCc
Confidence 443 467777754
No 71
>PRK07121 hypothetical protein; Validated
Probab=99.08 E-value=2.8e-09 Score=119.68 Aligned_cols=64 Identities=20% Similarity=0.264 Sum_probs=51.6
Q ss_pred CHHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEec-CEEEEcCCCCcH
Q psy10285 405 DPWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITF-AICVIAAGAYSG 482 (673)
Q Consensus 405 ~~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~a-d~VVlAtG~~s~ 482 (673)
....++..|.+.+++.|++|+ +++|++|..+++ ++|.++.+.. +++...++| +.||+|||+++.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~-------------g~v~Gv~~~~-~~~~~~i~a~k~VVlAtGg~~~ 240 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDD-------------GRVVGVEARR-YGETVAIRARKGVVLAAGGFAM 240 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC-------------CCEEEEEEEe-CCcEEEEEeCCEEEECCCCcCc
Confidence 457789999999999999998 469999988754 6888976654 444467899 999999998874
No 72
>PLN02463 lycopene beta cyclase
Probab=99.08 E-value=1.9e-08 Score=110.68 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=51.4
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
.++...+.+.|.+.+.+.|++++.++|++|+..++ ++.|.+.+| .+++||.||.|+|..+.
T Consensus 110 ~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~-----------------~~~V~~~dG--~~i~A~lVI~AdG~~s~ 170 (447)
T PLN02463 110 RVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEES-----------------KSLVVCDDG--VKIQASLVLDATGFSRC 170 (447)
T ss_pred eEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCC-----------------eEEEEECCC--CEEEcCEEEECcCCCcC
Confidence 46778888999999988999998789999988764 466888888 48999999999998764
No 73
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=99.07 E-value=4.7e-08 Score=106.48 Aligned_cols=195 Identities=9% Similarity=0.082 Sum_probs=107.8
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
.++...+.+.|.+.+.+.|++++.++|+.+..+++ ..+.|.+.+| .+++|+.||.|+|.++
T Consensus 81 ~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~----------------~~~~v~~~~g--~~~~a~~VI~A~G~~s- 141 (388)
T TIGR01790 81 SVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGV----------------ALSTVYCAGG--QRIQARLVIDARGFGP- 141 (388)
T ss_pred EEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCC----------------ceeEEEeCCC--CEEEeCEEEECCCCch-
Confidence 47788999999999998899998778888877632 1455777777 4899999999999987
Q ss_pred HHHHHcCCCCCcccccccccccCcceeeeeEEEEeCCCCCCCCCCeEEcC-------------C--CceEEEecCCceEE
Q psy10285 483 QVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDT-------------T--GTYFRREGLGNYYI 547 (673)
Q Consensus 483 ~l~~~~g~~~~~~~~~~~~~~lp~~~~r~~~~~~~~~~~~~~~~~~~~~~-------------~--~~y~~~~~~~g~~i 547 (673)
++...... .........|+.+.+..+... .+.+++++. . ..|+.|.+ ++.+.
T Consensus 142 -~~~~~~~~----------~~~~~q~~~G~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~f~~~lP~~-~~~~~ 208 (388)
T TIGR01790 142 -LVQYVRFP----------LNVGFQVAYGVEARLSRPPHG-PSSMVIMDARVDQLAAPELKGYRPTFLYAMPLG-STRVF 208 (388)
T ss_pred -hcccccCC----------CCceEEEEEEEEEEEcCCCCC-CCceEEEeccccccccccccCCCCceEEEeecC-CCeEE
Confidence 22211100 122333455655544422111 122232221 1 46788885 34555
Q ss_pred ecCCCCCCCCCCCCCCCCChhHHHHhHHHHHhhhccccccccccceeeeeccCCCCCCCceeecCCCCCcEEEEEc----
Q psy10285 548 CGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATG---- 623 (673)
Q Consensus 548 ~G~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~P~l~~~~i~~~w~G~~~~~t~d~~Piig~~~~~~~l~~~~G---- 623 (673)
++.+..... + ....+.+.+.+.+.+.+. .+...++...-.|++|+ .. ..+. ..++++++.-
T Consensus 209 v~~~~~~~~-~-----~~~~~~~~~~l~~~~~~~--g~~~~~i~~~~~~~iP~-~~-~~~~-----~~~rv~liGdAAg~ 273 (388)
T TIGR01790 209 IEETSLADR-P-----ALPRDRLRQRILARLNAQ--GWQIKTIEEEEWGALPV-GL-PGPF-----LPQRVAAFGAAAGM 273 (388)
T ss_pred EEeccccCC-C-----CCCHHHHHHHHHHHHHHc--CCeeeEEEeeeeEEEec-cc-CCCc-----cCCCeeeeechhcC
Confidence 554332211 1 111233323333333222 23223333434455554 21 1121 1234544433
Q ss_pred ---cCCccccchhHHHHHHHHHHH
Q psy10285 624 ---FSGHGIQQAPAIGRAVSELIL 644 (673)
Q Consensus 624 ---~~g~G~~~ap~~g~~va~~i~ 644 (673)
.+|.|+.++.-.|..+|+.+.
T Consensus 274 ~~P~tG~Gi~~al~~a~~la~~l~ 297 (388)
T TIGR01790 274 VHPTTGYSVARALSDAPGLAAAIA 297 (388)
T ss_pred cCCcccccHHHHHHHHHHHHHHHH
Confidence 677789999999999998884
No 74
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.07 E-value=2e-09 Score=120.19 Aligned_cols=189 Identities=16% Similarity=0.148 Sum_probs=106.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhH-HHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIE-MSLFGAEFL 321 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~-~~~~~~~~~ 321 (673)
..+||+|||+|.+|+++|+.++ +.|.+|+||||.+.. ..++++..+.| +........... ......+++
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa---~~G~~V~vlEk~~~~------~~GG~s~~s~G-~~~~~~~~~~~~~~~~~~~~~~ 72 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAAR---EAGASVLLLEAAPRE------WRGGNSRHTRN-LRCMHDAPQDVLVGAYPEEEFW 72 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHH---HCCCeEEEEeCCCCc------CCCcccccCCc-eeeeCCCchhhccccccHHHHH
Confidence 4589999999999999999999 889999999998740 12344444444 332221111000 000112234
Q ss_pred HHHHhhccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCc
Q psy10285 322 RNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKE 401 (673)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~ 401 (673)
+.+.+..... .+..+ + ....+.....++++.+.|+++........ .+ ... ..+ ...
T Consensus 73 ~~~~~~~~~~----~~~~~-----~----~~~~~~s~~~~~wl~~~Gv~~~~~~~~~~---~~-~~~-----~~~-~~g- 128 (466)
T PRK08274 73 QDLLRVTGGR----TDEAL-----A----RLLIRESSDCRDWMRKHGVRFQPPLSGAL---HV-ART-----NAF-FWG- 128 (466)
T ss_pred HHHHHhhCCC----CCHHH-----H----HHHHHcCHHHHHHHHhCCceEeecCCCcc---cc-CCC-----Cee-ecC-
Confidence 4433221100 00000 0 00001112334556677766543221110 00 000 011 111
Q ss_pred eeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 402 GWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 402 g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
....++..|.+.+++.|++++. ++|++|..++ ++|.++.+...+|+...++|+.||+|||++
T Consensus 129 ---~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~--------------g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 129 ---GGKALVNALYRSAERLGVEIRYDAPVTALELDD--------------GRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred ---CHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecC--------------CeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 1467888999999999999995 5999998754 678886665455555678999999999987
Q ss_pred cH
Q psy10285 481 SG 482 (673)
Q Consensus 481 s~ 482 (673)
..
T Consensus 192 ~~ 193 (466)
T PRK08274 192 ES 193 (466)
T ss_pred CC
Confidence 54
No 75
>PRK07846 mycothione reductase; Reviewed
Probab=99.06 E-value=1.5e-09 Score=120.19 Aligned_cols=35 Identities=34% Similarity=0.513 Sum_probs=32.3
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.++++|||+|.+|+++|..|+ ..|.+|+++++.+.
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~---~~G~~Vtli~~~~~ 200 (451)
T PRK07846 166 PESLVIVGGGFIAAEFAHVFS---ALGVRVTVVNRSGR 200 (451)
T ss_pred CCeEEEECCCHHHHHHHHHHH---HcCCeEEEEEcCCc
Confidence 478999999999999999999 88999999998766
No 76
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=99.06 E-value=1.7e-09 Score=119.81 Aligned_cols=186 Identities=16% Similarity=0.185 Sum_probs=106.2
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCC-CeEEEEecCCCCCCCcccccccccccccCceecccCcch-hhHHHHHHHHHHHH
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDG-CRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRE-NIEMSLFGAEFLRN 323 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g-~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~-~~~~~~~~~~~~~~ 323 (673)
||+|||+|.+|+.+|+.++ +.| .+|+||||.+. .++++..+.|++........ ..........+++.
T Consensus 1 DVvVVG~G~AGl~AA~~aa---~~G~~~V~vlEk~~~--------~gg~s~~s~g~~~~~~~~~~~~~g~~~~~~~~~~~ 69 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAK---KAGAANVVLLEKMPV--------IGGNSAIAAGGMNAAGTDQQKALGIEDSPELFIKD 69 (439)
T ss_pred CEEEECCCHHHHHHHHHHH---HcCCccEEEEecCCC--------CCCcccccCceeecCCCHHHHhcCCCCCHHHHHHH
Confidence 7999999999999999999 789 99999999887 34555555565543221100 00000001112222
Q ss_pred HHhhccccCCCCCCcceeecCeEEEeccchHHHH----HHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccC
Q psy10285 324 IKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATL----EKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLE 399 (673)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l----~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~ 399 (673)
+..... + ..+++-.+.+ ...++++. .++.++.... .. ....... ... .+
T Consensus 70 ~~~~~~--------------~---~~~~~l~~~~~~~~~~~i~wl~-~~~~~~~~~~-----~~--~~~~~~~-~~~-~~ 122 (439)
T TIGR01813 70 TLKGGR--------------G---INDPELVRILAEESADAVDWLQ-DGVGARLDDL-----IQ--LGGHSVP-RAH-RP 122 (439)
T ss_pred HHHhcC--------------C---CCCHHHHHHHHhccHHHHHHHH-hCCCeeeccc-----cc--cCCcCCC-ccc-cC
Confidence 211100 0 0011101111 11223333 2332221100 00 0000000 011 23
Q ss_pred CceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCC
Q psy10285 400 KEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAG 478 (673)
Q Consensus 400 ~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG 478 (673)
..+......++..|.+.+++.|++++. ++|++|..+++ ++|.++.+.+.+++...+.+|.||+|+|
T Consensus 123 ~~g~~~g~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~-------------g~v~Gv~~~~~~g~~~~~~a~~VVlAtG 189 (439)
T TIGR01813 123 TGGAGSGAEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ-------------GTVVGVVVKGKGKGIYIKAAKAVVLATG 189 (439)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCEEEeCCEeeEeEECCC-------------CcEEEEEEEeCCCeEEEEecceEEEecC
Confidence 344456678999999999999999995 59999998654 6788887777666445689999999999
Q ss_pred CCcH
Q psy10285 479 AYSG 482 (673)
Q Consensus 479 ~~s~ 482 (673)
+++.
T Consensus 190 g~~~ 193 (439)
T TIGR01813 190 GFGS 193 (439)
T ss_pred CCCC
Confidence 9886
No 77
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=99.05 E-value=1.8e-08 Score=109.47 Aligned_cols=60 Identities=18% Similarity=0.159 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
.++.+.|.+.+++.|++++. ++|++++..+ +++.. +.+.+|+...++||.||+|+|.+..
T Consensus 259 ~rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~--------------~~V~~--v~~~~g~~~~i~AD~VVLAtGrf~s 319 (422)
T PRK05329 259 LRLQNALRRAFERLGGRIMPGDEVLGAEFEG--------------GRVTA--VWTRNHGDIPLRARHFVLATGSFFS 319 (422)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--------------CEEEE--EEeeCCceEEEECCEEEEeCCCccc
Confidence 46788899999999999995 4999998765 33434 3355565467999999999998643
No 78
>KOG1335|consensus
Probab=99.05 E-value=9e-10 Score=112.52 Aligned_cols=36 Identities=31% Similarity=0.444 Sum_probs=33.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||++|||+|+.|..+|++++|. |++.++||++..
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl---GlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL---GLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh---cceeEEEeccCc
Confidence 469999999999999999999999 999999998654
No 79
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=99.05 E-value=2.2e-09 Score=117.12 Aligned_cols=36 Identities=28% Similarity=0.517 Sum_probs=32.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..++|+|||+|.+|+++|..|+ +.|.+|+++++.+.
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~---~~g~~Vtlv~~~~~ 178 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASAT---QRRCKVTVIELAAT 178 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHH---HcCCeEEEEecCCc
Confidence 3578999999999999999999 88999999998765
No 80
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=99.02 E-value=3.5e-08 Score=107.43 Aligned_cols=69 Identities=14% Similarity=0.035 Sum_probs=55.1
Q ss_pred eeCHHHHHHHHHHHHHHcC-CeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 403 WFDPWLYLNAVKKKAISLG-AEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~G-v~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
.++...+...|.+.+++.| ++++.++|+++..+++ ++.|.+.+| .+++||.||.|+|.++
T Consensus 107 ~i~~~~l~~~L~~~~~~~~~v~~~~~~v~~i~~~~~-----------------~~~v~~~~g--~~~~a~~vI~adG~~S 167 (388)
T PRK07608 107 IVESSLIERALWAALRFQPNLTWFPARAQGLEVDPD-----------------AATLTLADG--QVLRADLVVGADGAHS 167 (388)
T ss_pred EEEhHHHHHHHHHHHHhCCCcEEEcceeEEEEecCC-----------------eEEEEECCC--CEEEeeEEEEeCCCCc
Confidence 4677889999999998887 8888658999887664 566777777 3799999999999998
Q ss_pred HHHHHHcCCC
Q psy10285 482 GQVARMLKIG 491 (673)
Q Consensus 482 ~~l~~~~g~~ 491 (673)
. +.+.+++.
T Consensus 168 ~-vr~~~~~~ 176 (388)
T PRK07608 168 W-VRSQAGIK 176 (388)
T ss_pred h-HHHhcCCC
Confidence 6 66666653
No 81
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.02 E-value=2.7e-08 Score=108.48 Aligned_cols=69 Identities=16% Similarity=0.213 Sum_probs=55.3
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
.++...+.+.|.+.+++.|++++. ++|++++.+++ ++.|++.+|+ +++||.||.|+|.++
T Consensus 109 ~v~~~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~-----------------~v~v~~~~g~--~~~a~~vV~AdG~~S 169 (392)
T PRK08773 109 IVENDLLVDRLWAALHAAGVQLHCPARVVALEQDAD-----------------RVRLRLDDGR--RLEAALAIAADGAAS 169 (392)
T ss_pred EEEhHHHHHHHHHHHHhCCCEEEcCCeEEEEEecCC-----------------eEEEEECCCC--EEEeCEEEEecCCCc
Confidence 355678889999999999999985 59999987664 5667777773 799999999999998
Q ss_pred HHHHHHcCCC
Q psy10285 482 GQVARMLKIG 491 (673)
Q Consensus 482 ~~l~~~~g~~ 491 (673)
.+.+.+++.
T Consensus 170 -~vr~~~g~~ 178 (392)
T PRK08773 170 -TLRELAGLP 178 (392)
T ss_pred -hHHHhhcCC
Confidence 577766653
No 82
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=99.01 E-value=7.3e-09 Score=118.76 Aligned_cols=194 Identities=13% Similarity=0.117 Sum_probs=111.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCc--chhhHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSL--RENIEMSLFGAEF 320 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~--~~~~~~~~~~~~~ 320 (673)
..+||+|||+|.+|+.+|+.++ +.|.+|+||||... .++++....|++...... ....+ .+
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa---~~G~~V~lveK~~~--------~~g~t~~a~Ggi~a~~~~~~~Ds~e------~~ 90 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLV---ELGYKTACISKLFP--------TRSHTVAAQGGINAALGNMTEDDWR------WH 90 (617)
T ss_pred cccCEEEECccHHHHHHHHHHH---HcCCcEEEEeccCC--------CCCCchhhcCCeeEEecCCCCCCHH------HH
Confidence 4689999999999999999999 78999999999887 334555556665432221 11111 01
Q ss_pred HHHHHhhccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHh-hCCCCCc----c-cceeE
Q psy10285 321 LRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKA-KFPWLNT----D-DIALA 394 (673)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~----~-~~~~g 394 (673)
+.++.+.-. .-.+... -..-.+...+.++++.++|+++.......+.. .+..... . .....
T Consensus 91 ~~D~~~~g~----~~~d~~l---------v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~~r~ 157 (617)
T PTZ00139 91 AYDTVKGSD----WLGDQDA---------IQYMCREAPQAVLELESYGLPFSRTKDGKIYQRAFGGQSLKFGKGGQAYRC 157 (617)
T ss_pred HHHHHHHhC----CCCCHHH---------HHHHHHHHHHHHHHHHhcCCceEeCCCCcEeecccCcccccccCCCcccee
Confidence 111111000 0000000 01112223344556677887765421110000 0000000 0 00000
Q ss_pred EeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEEecCE
Q psy10285 395 CLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTITFAI 472 (673)
Q Consensus 395 ~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i~ad~ 472 (673)
.+ . +--....++..|.+.+++.|++++. +.|++|..+++ ++|.|+.+. ..+|+...+.|+.
T Consensus 158 ~~-~---~d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-------------g~v~Gv~~~~~~~g~~~~i~Aka 220 (617)
T PTZ00139 158 AA-A---ADRTGHAMLHTLYGQSLKYDCNFFIEYFALDLIMDED-------------GECRGVIAMSMEDGSIHRFRAHY 220 (617)
T ss_pred ee-c---CCCcHHHHHHHHHHHHHhCCCEEEeceEEEEEEECCC-------------CEEEEEEEEECCCCeEEEEECCc
Confidence 00 0 0112468889999999999999995 59999987444 789997664 4577667899999
Q ss_pred EEEcCCCCcHH
Q psy10285 473 CVIAAGAYSGQ 483 (673)
Q Consensus 473 VVlAtG~~s~~ 483 (673)
||+|||++...
T Consensus 221 VVLATGG~~~~ 231 (617)
T PTZ00139 221 TVIATGGYGRA 231 (617)
T ss_pred EEEeCCCCccc
Confidence 99999998754
No 83
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=99.00 E-value=6.6e-09 Score=118.56 Aligned_cols=191 Identities=17% Similarity=0.182 Sum_probs=110.3
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCc--chhhHHHHHHHH
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSL--RENIEMSLFGAE 319 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~--~~~~~~~~~~~~ 319 (673)
...+||+|||+|.+|+.+|..++ ..|.+|+|+||... ..+++....|++...... ....+ .
T Consensus 5 ~~~~DVlVVG~G~AGl~AAi~Aa---~~G~~V~lleK~~~--------~~g~t~~a~Ggi~a~~~~~~~Ds~e------~ 67 (588)
T PRK08958 5 VREFDAVVIGAGGAGMRAALQIS---QSGQSCALLSKVFP--------TRSHTVSAQGGITVALGNTHEDNWE------W 67 (588)
T ss_pred ccccCEEEECccHHHHHHHHHHH---HcCCcEEEEEccCC--------CCCccHHhhhhHhhhcCCCCCCCHH------H
Confidence 35689999999999999999999 78999999999876 233444445555432211 11111 1
Q ss_pred HHHHHHhhccccCCCCCCcceeecCeEEEeccc----hHHHHHHHHHHHHHcCCcceeeCHhhHH-hhCCCCCcc----c
Q psy10285 320 FLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQD----GAATLEKNHQLQKELGAKNVLLGPEQLK-AKFPWLNTD----D 390 (673)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~----~ 390 (673)
++.++.+.-. + +.+++ ..+...+.++++.++|+++......... ..+...... .
T Consensus 68 ~~~D~~~~g~--------------~---~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~~~~~~~~ 130 (588)
T PRK08958 68 HMYDTVKGSD--------------Y---IGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQ 130 (588)
T ss_pred HHHHHHHHhC--------------C---CCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCceeecccccccccccccc
Confidence 1111111000 0 11111 1122334455667778776432111000 000000000 0
Q ss_pred ceeEEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEE
Q psy10285 391 IALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTI 468 (673)
Q Consensus 391 ~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i 468 (673)
.....+ .. --....++..|.+.+++.|+++++ +.|++|..+++ |+|.|+.+. ..+|+...+
T Consensus 131 ~~r~~~-~~---~~~G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-------------g~v~Gv~~~~~~~g~~~~i 193 (588)
T PRK08958 131 AARTAA-AA---DRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD-------------GAVVGCTAICIETGEVVYF 193 (588)
T ss_pred cceeEe-cC---CCCHHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC-------------CEEEEEEEEEcCCCcEEEE
Confidence 000111 00 112467888999988888999985 59999987644 789997664 456766689
Q ss_pred ecCEEEEcCCCCcHH
Q psy10285 469 TFAICVIAAGAYSGQ 483 (673)
Q Consensus 469 ~ad~VVlAtG~~s~~ 483 (673)
.|+.||+|||+++..
T Consensus 194 ~AkaVILATGG~~~~ 208 (588)
T PRK08958 194 KARATVLATGGAGRI 208 (588)
T ss_pred EcCeEEECCCCcccc
Confidence 999999999998864
No 84
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.99 E-value=1e-08 Score=117.33 Aligned_cols=191 Identities=15% Similarity=0.192 Sum_probs=109.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCc--chhhHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSL--RENIEMSLFGAEF 320 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~--~~~~~~~~~~~~~ 320 (673)
..+||+|||+|.+|+.+|+.++ +.|.+|+||||... ..+++....|++...... ....+ .+
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa---~~G~~V~lveK~~~--------~~g~s~~a~Ggi~a~~~~~~~Ds~e------~~ 73 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMA---EAGLKTACITKVFP--------TRSHTVAAQGGISASLGNMGEDDWR------WH 73 (598)
T ss_pred cccCEEEECccHHHHHHHHHHH---HcCCcEEEEEccCC--------CCcchhhhcCCcccccCCCCCCCHH------HH
Confidence 4689999999999999999999 78999999999876 333444455555432211 11111 01
Q ss_pred HHHHHhhccccCCCCCCcceeecCeEEEeccc----hHHHHHHHHHHHHHcCCcceeeCHhhHH-hhCCCCCc-----cc
Q psy10285 321 LRNIKHHCHVIGEDEPDVNFTPNGYLFCASQD----GAATLEKNHQLQKELGAKNVLLGPEQLK-AKFPWLNT-----DD 390 (673)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~-----~~ 390 (673)
+.+..+... + +.+++ -.+.....++++.++|+++......... ..+..... +.
T Consensus 74 ~~d~~~~g~--------------~---~~d~~lv~~l~~~s~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~~~~~~~~~~ 136 (598)
T PRK09078 74 MYDTVKGSD--------------W---LGDQDAIEYMCREAPAAVYELEHYGVPFSRTEEGKIYQRPFGGMTTNYGKGPP 136 (598)
T ss_pred HHHHHHhcc--------------C---CCCHHHHHHHHHHHHHHHHHHHHcCCcceecCCCceeecccCceecccCCCCc
Confidence 111111000 0 00111 1112233344566777765432111000 00000000 00
Q ss_pred ceeEEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEE
Q psy10285 391 IALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTI 468 (673)
Q Consensus 391 ~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i 468 (673)
.....+ . . ......++..|.+.+++.|++++. +.|++|..+++ ++|.|+.+. ..+|+...+
T Consensus 137 ~~R~~~-~-~--d~tG~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~-------------g~v~Gv~~~~~~~g~~~~i 199 (598)
T PRK09078 137 AQRTCA-A-A--DRTGHAILHTLYQQSLKHNAEFFIEYFALDLIMDDG-------------GVCRGVVAWNLDDGTLHRF 199 (598)
T ss_pred cceeEe-c-C--CCCHHHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC-------------CEEEEEEEEECCCCcEEEE
Confidence 000111 0 0 112357888999999999999995 59999987654 689997764 457766789
Q ss_pred ecCEEEEcCCCCcHHH
Q psy10285 469 TFAICVIAAGAYSGQV 484 (673)
Q Consensus 469 ~ad~VVlAtG~~s~~l 484 (673)
.|+.||+|||++....
T Consensus 200 ~AkaVVLATGG~~~~~ 215 (598)
T PRK09078 200 RAHMVVLATGGYGRAY 215 (598)
T ss_pred EcCEEEECCCCCcccc
Confidence 9999999999998643
No 85
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.99 E-value=9.9e-10 Score=124.76 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=33.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
...+|+|||+|.+|+.+|..|+ +.|.+|+++++.+.
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~---~~g~~Vtli~~~~~ 177 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLT---RYASKVTVIVREPD 177 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHH---ccCCEEEEEEeCCc
Confidence 5679999999999999999999 88999999998775
No 86
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=98.99 E-value=5.5e-08 Score=105.52 Aligned_cols=36 Identities=31% Similarity=0.518 Sum_probs=32.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..++|+|||+|.+|+++|..|+ ..+.+|+++++.+.
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~---~~g~~Vtlv~~~~~ 175 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLC---RAGKAVTLVDNAAS 175 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHH---hcCCeEEEEecCCc
Confidence 3578999999999999999999 88999999998766
No 87
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.97 E-value=9.6e-08 Score=104.25 Aligned_cols=72 Identities=21% Similarity=0.239 Sum_probs=53.7
Q ss_pred ceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCC
Q psy10285 401 EGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479 (673)
Q Consensus 401 ~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~ 479 (673)
...++-..+.+.|.+.+++.|++++. +.|+.+..+++ ++.+.+..+. .+++|+.||.|.|.
T Consensus 89 ~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~-----------------~~~~~~~~~~-~e~~a~~vI~AdG~ 150 (396)
T COG0644 89 GYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDD-----------------GVVVGVRAGD-DEVRAKVVIDADGV 150 (396)
T ss_pred eEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCC-----------------cEEEEEEcCC-EEEEcCEEEECCCc
Confidence 45677788999999999999999996 59999998875 2222222221 58999999999996
Q ss_pred CcHHHHHHcCCC
Q psy10285 480 YSGQVARMLKIG 491 (673)
Q Consensus 480 ~s~~l~~~~g~~ 491 (673)
. +.+.+.+++.
T Consensus 151 ~-s~l~~~lg~~ 161 (396)
T COG0644 151 N-SALARKLGLK 161 (396)
T ss_pred c-hHHHHHhCCC
Confidence 4 4566766653
No 88
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.97 E-value=1.1e-08 Score=117.33 Aligned_cols=195 Identities=14% Similarity=0.147 Sum_probs=110.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCc--chhhHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSL--RENIEMSLFGAEF 320 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~--~~~~~~~~~~~~~ 320 (673)
..+||+|||+|.+|+.+|+.++ +.|.+|+||||... ..+++....|++...... ....+ .+
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aa---e~G~~VilveK~~~--------~~g~s~~a~Ggi~a~~~~~~~Ds~e------~~ 111 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLS---EHGFNTACITKLFP--------TRSHTVAAQGGINAALGNMTEDDWR------WH 111 (635)
T ss_pred eecCEEEECccHHHHHHHHHHH---hcCCcEEEEEcCCC--------CCCchHHhhcCceeecCCCCCCCHH------HH
Confidence 4589999999999999999999 78999999999887 344555555665432221 11111 11
Q ss_pred HHHHHhhccccCCCCCCcceeecCeEEEeccc----hHHHHHHHHHHHHHcCCcceeeCHhhHH-hhCCCCCcccceeE-
Q psy10285 321 LRNIKHHCHVIGEDEPDVNFTPNGYLFCASQD----GAATLEKNHQLQKELGAKNVLLGPEQLK-AKFPWLNTDDIALA- 394 (673)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~g- 394 (673)
+.++.+.-. + ..+++ -.+...+.++++.++|+++.......+. ..+..........+
T Consensus 112 ~~Dt~~~g~--------------~---~~d~~lv~~l~~~s~~~i~~L~~~Gv~F~~~~~g~~~~~~~gg~s~~~~~~g~ 174 (635)
T PLN00128 112 MYDTVKGSD--------------W---LGDQDAIQYMCREAPKAVIELENYGLPFSRTEDGKIYQRAFGGQSLDFGKGGQ 174 (635)
T ss_pred HHHHHHhhC--------------C---CCCHHHHHHHHHhHHHHHHHHHhCCCccccCCCCceeeccccccccccCCCcc
Confidence 111111000 0 01111 1122233445666777765421110000 00000000000000
Q ss_pred EeccCCceeeCHHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEc-CCCCeeEEecCE
Q psy10285 395 CLGLEKEGWFDPWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD-EKGELKTITFAI 472 (673)
Q Consensus 395 ~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t-~~G~~~~i~ad~ 472 (673)
.......+-.....++..|.+.+++.|++++ ++.+++|..+++ ++|.|+.+.. .+|+...+.|+.
T Consensus 175 ~~r~~~~~d~tG~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~-------------g~v~Gv~~~~~~~g~~~~i~Aka 241 (635)
T PLN00128 175 AYRCACAADRTGHAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD-------------GACQGVIALNMEDGTLHRFRAHS 241 (635)
T ss_pred eeeeeccCCCCHHHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC-------------CEEEEEEEEEcCCCeEEEEEcCe
Confidence 0000000111246788999998988999998 469999887644 6899977654 467667899999
Q ss_pred EEEcCCCCcHHH
Q psy10285 473 CVIAAGAYSGQV 484 (673)
Q Consensus 473 VVlAtG~~s~~l 484 (673)
||+|||++....
T Consensus 242 VILATGG~g~~~ 253 (635)
T PLN00128 242 TILATGGYGRAY 253 (635)
T ss_pred EEECCCCCcccc
Confidence 999999997643
No 89
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=98.97 E-value=7.6e-09 Score=114.77 Aligned_cols=35 Identities=31% Similarity=0.538 Sum_probs=32.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.++++|||+|.+|++.|..|+ ..|.+|+++++.+.
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~---~~G~~Vtli~~~~~ 203 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFS---ALGTRVTIVNRSTK 203 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHH---hCCCcEEEEEccCc
Confidence 478999999999999999999 88999999998765
No 90
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.96 E-value=1.7e-08 Score=115.39 Aligned_cols=193 Identities=15% Similarity=0.169 Sum_probs=108.6
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHH
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFL 321 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~ 321 (673)
...+||+|||+|.+|+.+|..++ ..|.+|+||||... ..+++....|++............ ..++
T Consensus 10 ~~~~DVlVIG~G~AGl~AAi~Aa---~~G~~V~vleK~~~--------~~g~t~~a~Ggi~~~~~~~~~ds~----~~~~ 74 (591)
T PRK07057 10 RRKFDVVIVGAGGSGMRASLQLA---RAGLSVAVLSKVFP--------TRSHTVAAQGGIGASLGNMSEDNW----HYHF 74 (591)
T ss_pred cccCCEEEECccHHHHHHHHHHH---HCCCcEEEEeccCC--------CCCCchhccCCcccccccccccCh----hHhH
Confidence 35689999999999999999999 78999999999876 334445555555432221000000 0011
Q ss_pred HHHHhhccccCCCCCCcceeecCeEEEeccch----HHHHHHHHHHHHHcCCcceeeCHhhHHh-hCCCCCc----ccce
Q psy10285 322 RNIKHHCHVIGEDEPDVNFTPNGYLFCASQDG----AATLEKNHQLQKELGAKNVLLGPEQLKA-KFPWLNT----DDIA 392 (673)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~l~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~----~~~~ 392 (673)
.+...... + ..+++- .+...+.++++.++|+++.......+.. .+..-.. ....
T Consensus 75 ~dt~~~g~--------------~---~~d~~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~~~~gg~s~~~~~~~~~ 137 (591)
T PRK07057 75 YDTIKGSD--------------W---LGDQDAIEFMCREAPNVVYELEHFGMPFDRNADGTIYQRPFGGHTANYGEKPVQ 137 (591)
T ss_pred HHHHHhcC--------------C---CCCHHHHHHHHHHHHHHHHHHHhcCCcceeCCCCcEeeeccCCccccccCCccc
Confidence 11111000 0 011111 1122334455667777654321110000 0000000 0000
Q ss_pred eEEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEEec
Q psy10285 393 LACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTITF 470 (673)
Q Consensus 393 ~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i~a 470 (673)
..++ . +-.....++..|.+.+.+.|++++. +.++++..+++ ++|.|+.+. ..+|+...+.|
T Consensus 138 r~~~-~---~~~tG~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-------------g~v~Gv~~~~~~~g~~~~i~A 200 (591)
T PRK07057 138 RACA-A---ADRTGHALLHTLYQQNVAAKTQFFVEWMALDLIRDAD-------------GDVLGVTALEMETGDVYILEA 200 (591)
T ss_pred eeee-c---CCCChHHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC-------------CeEEEEEEEEcCCCeEEEEEC
Confidence 0111 0 1112357888899988889999985 58999987654 688897764 34665567899
Q ss_pred CEEEEcCCCCcHH
Q psy10285 471 AICVIAAGAYSGQ 483 (673)
Q Consensus 471 d~VVlAtG~~s~~ 483 (673)
+.||+|||+++..
T Consensus 201 kaVILATGG~~~~ 213 (591)
T PRK07057 201 KTTLFATGGAGRI 213 (591)
T ss_pred CeEEECCCCcccc
Confidence 9999999998753
No 91
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.96 E-value=1.4e-08 Score=113.07 Aligned_cols=40 Identities=33% Similarity=0.412 Sum_probs=35.2
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCC
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDE 144 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~ 144 (673)
|+||||||++|+.+|..|+++ |++|+|||++.....|++.
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~---g~~v~~~e~~~~gG~c~~~ 42 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL---GADVTVIERDGLGGAAVLT 42 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC---CCeEEEEEccCCCCccccc
Confidence 899999999999999999999 9999999998765555543
No 92
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.95 E-value=3.4e-09 Score=114.79 Aligned_cols=69 Identities=17% Similarity=0.208 Sum_probs=46.9
Q ss_pred CHHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc--
Q psy10285 405 DPWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS-- 481 (673)
Q Consensus 405 ~~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s-- 481 (673)
....+++.|.+.+++.||+++ +++|.+|+..++ . .+.|.++++ .++.||.||+|+|+.+
T Consensus 107 ~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~--------------~--~f~v~~~~~--~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 107 KASSVVDALLEELKRLGVEIHFNTRVKSIEKKED--------------G--VFGVKTKNG--GEYEADAVILATGGKSYP 168 (409)
T ss_dssp -HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETT--------------E--EEEEEETTT--EEEEESEEEE----SSSG
T ss_pred cHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCC--------------c--eeEeeccCc--ccccCCEEEEecCCCCcc
Confidence 457889999999999999999 569999998764 1 256888544 4999999999999765
Q ss_pred --------HHHHHHcCCC
Q psy10285 482 --------GQVARMLKIG 491 (673)
Q Consensus 482 --------~~l~~~~g~~ 491 (673)
-.+++.+|+.
T Consensus 169 ~~GS~G~gy~~a~~lGh~ 186 (409)
T PF03486_consen 169 KTGSDGSGYRIAKKLGHT 186 (409)
T ss_dssp GGT-SSHHHHHHHHTT--
T ss_pred ccCCCcHHHHHHHHCCCc
Confidence 3567777754
No 93
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.94 E-value=1.9e-08 Score=113.96 Aligned_cols=187 Identities=16% Similarity=0.133 Sum_probs=108.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||+|.+|+.+|..++ +.|.+|+||||... ..+++....|++..........+ .++.
T Consensus 15 ~~~DVlVIG~G~AGl~AAi~aa---e~G~~VilleK~~~--------~~g~s~~a~Ggi~a~~~~~ds~e------~~~~ 77 (541)
T PRK07804 15 DAADVVVVGSGVAGLTAALAAR---RAGRRVLVVTKAAL--------DDGSTRWAQGGIAAVLDPGDSPE------AHVA 77 (541)
T ss_pred cccCEEEECccHHHHHHHHHHH---HcCCeEEEEEccCC--------CCCchhhhccceeeccCCCCCHH------HHHH
Confidence 5689999999999999999999 78999999999987 34556656666554332211111 1222
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccc----hHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEecc
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQD----GAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 398 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~ 398 (673)
++..... + ..+++ ..+...+.++++.++|+++..-....+ .+.........-.+.
T Consensus 78 d~~~~g~--------------g---~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~---~~~~~~g~~~~r~~~- 136 (541)
T PRK07804 78 DTLVAGA--------------G---LCDPDAVRSLVAEGPRAVRELVALGARFDESPDGRW---ALTREGGHSRRRIVH- 136 (541)
T ss_pred HHHHhcC--------------C---CCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCCcE---eeeccCCeecCeeEe-
Confidence 2211110 0 00111 111223334566667765432111000 000000000000110
Q ss_pred CCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-----cCCCCeeEEecCE
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-----DEKGELKTITFAI 472 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-----t~~G~~~~i~ad~ 472 (673)
. .+......++..|.+.+++.|++++. +.|++|..+++ ++|.++.+. +.++ ...+.|+.
T Consensus 137 ~-~~d~~G~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~-------------g~v~Gv~~~~~~~~~~~g-~~~i~Ak~ 201 (541)
T PRK07804 137 A-GGDATGAEVQRALDAAVRADPLDIREHALALDLLTDGT-------------GAVAGVTLHVLGEGSPDG-VGAVHAPA 201 (541)
T ss_pred c-CCCCCHHHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC-------------CeEEEEEEEeccCCCCCc-EEEEEcCe
Confidence 0 11123567889999999999999985 59999987654 688887765 2333 35789999
Q ss_pred EEEcCCCCcH
Q psy10285 473 CVIAAGAYSG 482 (673)
Q Consensus 473 VVlAtG~~s~ 482 (673)
||+|||+++.
T Consensus 202 VIlATGG~~~ 211 (541)
T PRK07804 202 VVLATGGLGQ 211 (541)
T ss_pred EEECCCCCCC
Confidence 9999999875
No 94
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=1.2e-08 Score=117.27 Aligned_cols=193 Identities=17% Similarity=0.130 Sum_probs=104.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcc-hhhHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLR-ENIEMSLFGAEFL 321 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~-~~~~~~~~~~~~~ 321 (673)
..+||+|||+|.+|+.+|..++ ..|.+|+|||+... .+.+++....|++....... .... ...++
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aa---e~G~~VilieK~~~-------~~~g~s~~a~GGi~a~~~~~~~~Ds----~~~~~ 99 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLG---ELGYNVKVFCYQDS-------PRRAHSIAAQGGINAAKNYQNDGDS----VYRLF 99 (640)
T ss_pred cccCEEEECccHHHHHHHHHHH---HcCCcEEEEecCCC-------CCcchhHHhhhchHhHhhccccCCC----HHHHH
Confidence 4689999999999999999999 78999999998655 23344444445543211100 0000 01122
Q ss_pred HHHHhhccccCCCCCCcceeecCeEEEeccc----hHHHHHHHHHHHHHcCCcceeeCHhhHH-hhCCCCCcccceeEEe
Q psy10285 322 RNIKHHCHVIGEDEPDVNFTPNGYLFCASQD----GAATLEKNHQLQKELGAKNVLLGPEQLK-AKFPWLNTDDIALACL 396 (673)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~g~~ 396 (673)
.++.+.-. + ..+++ -.+.....++++.++|+++..-....+. ..+.. .......+
T Consensus 100 ~d~~~~g~----------~-------~~d~~lv~~l~~~s~~~i~wL~~~GV~f~~~~~g~~~~~~~gg---hs~~R~~~ 159 (640)
T PRK07573 100 YDTVKGGD----------F-------RAREANVYRLAEVSVNIIDQCVAQGVPFAREYGGLLANRSFGG---AQVSRTFY 159 (640)
T ss_pred HHHHHhcC----------C-------CCCHHHHHHHHHHHHHHHHHHHhcCCccccCCCCceeccccCC---cccceeEe
Confidence 22211100 0 00111 1122234455666778765421100000 00000 00000111
Q ss_pred ccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcC-CCCeeEEecCEEE
Q psy10285 397 GLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE-KGELKTITFAICV 474 (673)
Q Consensus 397 ~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~-~G~~~~i~ad~VV 474 (673)
.....|..--..+...|.+.+++.||+|+. +.|++|..++ ++|.|+.+... +|+...+.|+.||
T Consensus 160 ~~~~tG~~i~~~l~~~L~~~~~~~gV~i~~~t~v~~Li~d~--------------g~V~GV~~~~~~~g~~~~i~AkaVV 225 (640)
T PRK07573 160 ARGQTGQQLLLGAYQALSRQIAAGTVKMYTRTEMLDLVVVD--------------GRARGIVARNLVTGEIERHTADAVV 225 (640)
T ss_pred CCCCCchhHHHHHHHHHHHHHHhcCCEEEeceEEEEEEEeC--------------CEEEEEEEEECCCCcEEEEECCEEE
Confidence 000111100112235666778888999985 5999998765 68999777653 5655679999999
Q ss_pred EcCCCCcHH
Q psy10285 475 IAAGAYSGQ 483 (673)
Q Consensus 475 lAtG~~s~~ 483 (673)
+|||+++..
T Consensus 226 LATGG~g~~ 234 (640)
T PRK07573 226 LATGGYGNV 234 (640)
T ss_pred ECCCCcccC
Confidence 999998863
No 95
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.93 E-value=8.5e-08 Score=104.95 Aligned_cols=70 Identities=26% Similarity=0.346 Sum_probs=56.2
Q ss_pred eeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 402 GWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 402 g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
..++...+...|.+.+.+.|++++. ++|++++.+++ ++.|.+.+|+ +++||.||.|.|.+
T Consensus 106 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-----------------~v~v~~~~g~--~~~ad~vI~AdG~~ 166 (403)
T PRK07333 106 HMVENRVLINALRKRAEALGIDLREATSVTDFETRDE-----------------GVTVTLSDGS--VLEARLLVAADGAR 166 (403)
T ss_pred EEeEhHHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-----------------EEEEEECCCC--EEEeCEEEEcCCCC
Confidence 3567788999999999999999995 59999987764 5667777773 79999999999998
Q ss_pred cHHHHHHcCCC
Q psy10285 481 SGQVARMLKIG 491 (673)
Q Consensus 481 s~~l~~~~g~~ 491 (673)
+. +.+.+++.
T Consensus 167 S~-vr~~~g~~ 176 (403)
T PRK07333 167 SK-LRELAGIK 176 (403)
T ss_pred hH-HHHHcCCC
Confidence 75 66666653
No 96
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.93 E-value=3.1e-08 Score=99.73 Aligned_cols=61 Identities=18% Similarity=0.230 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 406 PWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 406 ~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
..++-+.|...+++.|+.+.++ +|.+.+..+ ++|+. |.|.++....++||.+|+|+|.+.+
T Consensus 257 GiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~--------------~~v~~--i~trn~~diP~~a~~~VLAsGsffs 318 (421)
T COG3075 257 GIRLHNQLQRQFEQLGGLWMPGDEVKKATCKG--------------GRVTE--IYTRNHADIPLRADFYVLASGSFFS 318 (421)
T ss_pred hhhHHHHHHHHHHHcCceEecCCceeeeeeeC--------------CeEEE--EEecccccCCCChhHeeeecccccc
Confidence 3677888999999999999986 999998887 67888 6666665468999999999998743
No 97
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=2.1e-08 Score=114.08 Aligned_cols=184 Identities=17% Similarity=0.161 Sum_probs=106.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccC----cchhhHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFS----LRENIEMSLFGA 318 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~----~~~~~~~~~~~~ 318 (673)
..+||+|||+|.+|+.+|..++ ..|.+|+||||... ..+++....|++..... .....+
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aa---e~G~~V~lveK~~~--------~~g~s~~a~Ggi~~~~~~~~~~~Ds~e------ 66 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIA---SAGFKVAVISKVFP--------TRSHSAAAEGGIAAYIPGNSDPNDNPD------ 66 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHH---HCCCcEEEEEccCC--------CCCcchhhccchhhhccccCCCcccHH------
Confidence 4589999999999999999999 78999999999876 33444444555442211 111110
Q ss_pred HHHHHHHhhccccCCCCCCcceeecCeEEEeccc----hHHHHHHHHHHHHHcCCcceeeCHhhH-HhhCCCCCccccee
Q psy10285 319 EFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQD----GAATLEKNHQLQKELGAKNVLLGPEQL-KAKFPWLNTDDIAL 393 (673)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~ 393 (673)
.++...... +.. ..+++ -.+...+.++++..+|+++.......+ ...+. ......
T Consensus 67 ~~~~d~~~~----------------g~~-~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~g---g~~~~r 126 (566)
T PRK06452 67 YMTYDTVKG----------------GDY-LVDQDAAELLSNKSGEIVMLLERWGALFNRQPDGRVAVRYFG---GQTYPR 126 (566)
T ss_pred HHHHHHHHh----------------hcc-CCCHHHHHHHHHHHHHHHHHHHHCCCccccCCCCcEeccCCc---CccCCe
Confidence 011111110 000 01111 112223344566677776543211100 00010 000111
Q ss_pred EEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcC-CCCeeEEecC
Q psy10285 394 ACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE-KGELKTITFA 471 (673)
Q Consensus 394 g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~-~G~~~~i~ad 471 (673)
..+ .. .-....++..|.+.+++.|+++++ +.+++|..++ |+|.|+.+... +|+...+.|+
T Consensus 127 ~~~-~~---~~~G~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~--------------g~v~Gv~~~~~~~g~~~~i~Ak 188 (566)
T PRK06452 127 TRF-VG---DKTGMALLHTLFERTSGLNVDFYNEWFSLDLVTDN--------------KKVVGIVAMQMKTLTPFFFKTK 188 (566)
T ss_pred eEe-cC---CCCHHHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC--------------CEEEEEEEEECCCCeEEEEEeC
Confidence 111 10 112457888899888888999995 5999999865 78999777654 5555688999
Q ss_pred EEEEcCCCCc
Q psy10285 472 ICVIAAGAYS 481 (673)
Q Consensus 472 ~VVlAtG~~s 481 (673)
.||+|||++.
T Consensus 189 aVVLATGG~~ 198 (566)
T PRK06452 189 AVVLATGGMG 198 (566)
T ss_pred eEEECCCccc
Confidence 9999999987
No 98
>PRK07233 hypothetical protein; Provisional
Probab=98.91 E-value=4.4e-07 Score=100.22 Aligned_cols=54 Identities=13% Similarity=0.100 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCC
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~ 479 (673)
..+.+.|.+.+++.|++|+. ++|++|+.+++ ++.+.+.+| .+++||.||+|+..
T Consensus 198 ~~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~~-----------------~~~~~~~~~--~~~~ad~vI~a~p~ 252 (434)
T PRK07233 198 ATLIDALAEAIEARGGEIRLGTPVTSVVIDGG-----------------GVTGVEVDG--EEEDFDAVISTAPP 252 (434)
T ss_pred HHHHHHHHHHHHhcCceEEeCCCeeEEEEcCC-----------------ceEEEEeCC--ceEECCEEEECCCH
Confidence 67889999999999999984 59999987663 333333445 37999999999986
No 99
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.91 E-value=2.1e-08 Score=114.55 Aligned_cols=194 Identities=18% Similarity=0.199 Sum_probs=107.6
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||+|.+|+.+|+.++ .. .+|+|+||... .++++..+.|++............. .+..
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa---~~-~~VilleK~~~--------~~g~s~~a~Ggi~a~~~~~~~D~~e----~~~~ 67 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAG---PR-ARTAVLTKLYP--------TRSHTGAAQGGMCAALANVEEDNWE----WHTF 67 (583)
T ss_pred eeccEEEECccHHHHHHHHHHH---hC-CCEEEEeCCCC--------CCCCchhhhcchhhcccCCCCCCHH----HHHH
Confidence 3579999999999999999998 55 89999999877 3445555555554322210000000 0111
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccch----HHHHHHHHHHHHHcCCcceeeCHhhH-HhhCCCCCcc----ccee
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDG----AATLEKNHQLQKELGAKNVLLGPEQL-KAKFPWLNTD----DIAL 393 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~l~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~----~~~~ 393 (673)
..... +. .+.+++- .+...+.++++.++|+++........ ...++..... ....
T Consensus 68 d~~~~----------------g~-~~~d~~~v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~s~~~~~~~~~r 130 (583)
T PRK08205 68 DTVKG----------------GD-YLVDQDAAEIMAKEAIDAVLDLEKMGLPFNRTPEGKIDQRRFGGHTRDHGKAPVRR 130 (583)
T ss_pred HHHHh----------------hc-CCCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCCceeecccccccccccCCCccc
Confidence 11110 00 0111111 12233445667778877643211110 0111111000 0000
Q ss_pred EEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEEecC
Q psy10285 394 ACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTITFA 471 (673)
Q Consensus 394 g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i~ad 471 (673)
..+ . .-.....++..|.+.+++.|+++++ +.|++|..++++ + -++|.|+.+. ..+|+...+.|+
T Consensus 131 ~~~-~---~~~tG~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~--------~--~g~v~Gv~~~~~~~g~~~~i~Ak 196 (583)
T PRK08205 131 ACY-A---ADRTGHMILQTLYQNCVKHGVEFFNEFYVLDLLLTETP--------S--GPVAAGVVAYELATGEIHVFHAK 196 (583)
T ss_pred eec-c---CCCCHHHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCc--------c--CCcEEEEEEEEcCCCeEEEEEeC
Confidence 111 0 0113467889999999999999995 599999865410 0 0478886653 356655578999
Q ss_pred EEEEcCCCCcHH
Q psy10285 472 ICVIAAGAYSGQ 483 (673)
Q Consensus 472 ~VVlAtG~~s~~ 483 (673)
.||+|||+++..
T Consensus 197 aVVLATGG~~~~ 208 (583)
T PRK08205 197 AVVFATGGSGRV 208 (583)
T ss_pred eEEECCCCCccc
Confidence 999999998754
No 100
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.91 E-value=2.9e-08 Score=113.40 Aligned_cols=183 Identities=19% Similarity=0.248 Sum_probs=104.5
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCc---chhhHHHHHHHHHHH
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSL---RENIEMSLFGAEFLR 322 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~---~~~~~~~~~~~~~~~ 322 (673)
||+|||+|.+|+.+|+.++ +.|.+|+||||... ..+++....|++...... ....+ .+..
T Consensus 1 DVlVVG~G~AGl~AA~~aa---e~G~~V~lleK~~~--------~~g~s~~a~Gg~~~~~~~~~~~d~~e------~~~~ 63 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAA---KAGLNTAVISKVYP--------TRSHTVAAQGGMAAALGNVDPDDSWE------WHAY 63 (566)
T ss_pred CEEEECccHHHHHHHHHHH---HCCCcEEEEeccCC--------CCCcchhhccCeEeecCCCCCCccHH------HHHH
Confidence 7999999999999999999 78999999999887 233444445555432221 01110 0111
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccchH----HHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEecc
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDGA----ATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 398 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~ 398 (673)
+...... + ..+++-. +.....++++.+.|+++.......+.. .+ ..........+.
T Consensus 64 d~~~~~~--------------~---~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~-~~-~gg~~~~r~~~~- 123 (566)
T TIGR01812 64 DTVKGSD--------------Y---LADQDAVEYMCQEAPKAILELEHWGVPFSRTPDGRIAQ-RP-FGGHSKDRTCYA- 123 (566)
T ss_pred HHHHHhC--------------C---CCCHHHHHHHHHHHHHHHHHHHHcCCcceecCCCcEee-cc-ccccccCeeEEC-
Confidence 1111000 0 0011111 112234456667777654322111100 00 000000111111
Q ss_pred CCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEc-CCCCeeEEecCEEEEc
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD-EKGELKTITFAICVIA 476 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t-~~G~~~~i~ad~VVlA 476 (673)
. ......+...|.+.+++.|++++. +.|++|..++ ++|.++.+.. .+|+...+.|+.||+|
T Consensus 124 ~---~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~--------------g~v~Gv~~~~~~~g~~~~i~Ak~VVlA 186 (566)
T TIGR01812 124 A---DKTGHALLHTLYEQCLKLGVSFFNEYFALDLIHDD--------------GRVRGVVAYDLKTGEIVFFRAKAVVLA 186 (566)
T ss_pred C---CCCHHHHHHHHHHHHHHcCCEEEeccEEEEEEEeC--------------CEEEEEEEEECCCCcEEEEECCeEEEC
Confidence 1 112456788888888888999995 5999998765 6888876654 4665557999999999
Q ss_pred CCCCcH
Q psy10285 477 AGAYSG 482 (673)
Q Consensus 477 tG~~s~ 482 (673)
||+++.
T Consensus 187 tGG~~~ 192 (566)
T TIGR01812 187 TGGYGR 192 (566)
T ss_pred CCcccC
Confidence 999875
No 101
>KOG2853|consensus
Probab=98.91 E-value=5.7e-09 Score=105.09 Aligned_cols=140 Identities=31% Similarity=0.459 Sum_probs=91.1
Q ss_pred CccchhhHHHHHHhhhhhHhhhhhcc--CCCcccC----------CCCCCCccccEEEECCChHHHHHHHHHHHhcCC-C
Q psy10285 60 TDEHYHIKRAMRILKLDFQKLWRNVQ--DPESRYQ----------GNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLD-G 126 (673)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~----------~~~~~~~~~dvviiG~G~~G~~~A~~l~~~~~~-g 126 (673)
++.+ ++++.++.+..++++|.+... ++.+... ..+..+.++||||||||..|+|+||||+++..+ |
T Consensus 35 ~~~~-~ikr~lr~l~~d~R~~k~~f~~~~p~t~~~Pi~~~~~~~~~~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~g 113 (509)
T KOG2853|consen 35 PGED-VIKRVLRLLSYDFRRWKRLFQEADPFTRRLPIAHMKHGTLDNEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEG 113 (509)
T ss_pred CchH-HHHHHHHhccchHHHHHHhhcccccccccCCCcccccccccccccccccCEEEECCCccchhhHHHHHHHhhcCC
Confidence 3567 999999999999987666554 3333321 223456789999999999999999999998743 6
Q ss_pred ceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCcccccccCchHHHHHhhcccccC----Ccc---CCCceE
Q psy10285 127 CRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPTQESKVSDPHKALKETTNRYSFN----DAE---APSGYV 199 (673)
Q Consensus 127 ~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~g~l 199 (673)
++|+|+|++..|+ ..++.-+-+.+...-.-.+..+++..+..+.+...+..+. +.+ .++|.|
T Consensus 114 l~VvVVErddtyt-----------qssT~lSvGGi~QQFSlpEnIqmSLF~a~Flr~a~ehl~~~d~~~vdl~f~P~GyL 182 (509)
T KOG2853|consen 114 LNVVVVERDDTYT-----------QSSTMLSVGGICQQFSLPENIQMSLFTAEFLRNAREHLGILDSEQVDLNFFPTGYL 182 (509)
T ss_pred ceEEEEeccCccc-----------ccceeeeecceeeecccchhhhhhhHHHHHHHHHHHhhccccCCCCCcccCCCceE
Confidence 9999999998744 1111112222222222223445666777777666554442 222 689999
Q ss_pred EEeeCchhhHHHH
Q psy10285 200 DPAKTDEHYHIKR 212 (673)
Q Consensus 200 ~v~~~~~~~~~~~ 212 (673)
.++..+ ..+.++
T Consensus 183 ~LA~ee-~ae~m~ 194 (509)
T KOG2853|consen 183 RLASEE-EAEMMR 194 (509)
T ss_pred EEcchh-hHHHHH
Confidence 999743 334443
No 102
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.88 E-value=9.6e-08 Score=103.73 Aligned_cols=67 Identities=18% Similarity=0.228 Sum_probs=52.8
Q ss_pred eCHHHHHHHHHHHHHHcC-CeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 404 FDPWLYLNAVKKKAISLG-AEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~G-v~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
++...+.+.|.+.+.+.| ++++. ++|++++.+++ ++.|.+.+|+ ++.+|.||.|.|.++
T Consensus 103 i~r~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~-----------------~~~v~~~~g~--~~~~~~vi~adG~~S 163 (385)
T TIGR01988 103 VENRVLQQALWERLQEYPNVTLLCPARVVELPRHSD-----------------HVELTLDDGQ--QLRARLLVGADGANS 163 (385)
T ss_pred EEcHHHHHHHHHHHHhCCCcEEecCCeEEEEEecCC-----------------eeEEEECCCC--EEEeeEEEEeCCCCC
Confidence 455678899999998887 99985 59999987664 5667777884 799999999999987
Q ss_pred HHHHHHcCC
Q psy10285 482 GQVARMLKI 490 (673)
Q Consensus 482 ~~l~~~~g~ 490 (673)
. +.+.+++
T Consensus 164 ~-vr~~l~~ 171 (385)
T TIGR01988 164 K-VRQLAGI 171 (385)
T ss_pred H-HHHHcCC
Confidence 4 5565554
No 103
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.88 E-value=3e-08 Score=111.53 Aligned_cols=183 Identities=16% Similarity=0.155 Sum_probs=105.2
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHHH
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRN 323 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 323 (673)
.+||+|||+|.+|+.+|..++ . |.+|+||||.+. ..+++....|++.......... ..++.+
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~---~-g~~V~lveK~~~--------~~g~s~~a~Ggi~~~~~~~ds~------e~~~~d 64 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELC---H-EYNVIIITKKTK--------RNSNSHLAQGGIAAAVATYDSP------NDHFED 64 (510)
T ss_pred ccCEEEECccHHHHHHHHHhh---c-CCCEEEEeccCC--------CCCCchhcCccceecccCCCCH------HHHHHH
Confidence 479999999999999999987 5 789999999987 3344555556554332211111 112222
Q ss_pred HHhhccccCCCCCCcceeecCeEEEeccch----HHHHHHHHHHHHHcCCcceeeCHhhH-HhhCCCCCcccceeEEecc
Q psy10285 324 IKHHCHVIGEDEPDVNFTPNGYLFCASQDG----AATLEKNHQLQKELGAKNVLLGPEQL-KAKFPWLNTDDIALACLGL 398 (673)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~l~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~g~~~~ 398 (673)
+..... + ..+++- .+.....++++.++|+++..-....+ ...+. ..... -.+.
T Consensus 65 ~~~~g~--------------~---~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~g---g~~~~-r~~~- 122 (510)
T PRK08071 65 TLVAGC--------------H---HNNERAVRYLVEEGPKEIQELIENGMPFDGDETGPLHLGKEG---AHRKR-RILH- 122 (510)
T ss_pred HHHhcc--------------C---cCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCCceeeccCc---CccCC-eEEe-
Confidence 211100 0 011111 11223344556667776532110000 00000 00000 1111
Q ss_pred CCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcC
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAA 477 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAt 477 (673)
..+...+..++..|.+.++ .|+++++ +.|++|..++ ++|.++.+...+|+...+.|+.||+||
T Consensus 123 -~~gd~~g~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~--------------g~v~Gv~~~~~~g~~~~i~Ak~VVlAT 186 (510)
T PRK08071 123 -AGGDATGKNLLEHLLQELV-PHVTVVEQEMVIDLIIEN--------------GRCIGVLTKDSEGKLKRYYADYVVLAS 186 (510)
T ss_pred -cCCCCcHHHHHHHHHHHHh-cCCEEEECeEhhheeecC--------------CEEEEEEEEECCCcEEEEEcCeEEEec
Confidence 1122345678888888776 6999995 5899998654 678887666556665678999999999
Q ss_pred CCCcH
Q psy10285 478 GAYSG 482 (673)
Q Consensus 478 G~~s~ 482 (673)
|+++.
T Consensus 187 GG~~~ 191 (510)
T PRK08071 187 GGCGG 191 (510)
T ss_pred CCCcc
Confidence 99875
No 104
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=2.9e-08 Score=113.30 Aligned_cols=186 Identities=18% Similarity=0.220 Sum_probs=104.6
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccC--CCeEEEEecCCCCCCCcccccccccccccCceecccCc---chhhHHHHHHH
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLD--GCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSL---RENIEMSLFGA 318 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~--g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~---~~~~~~~~~~~ 318 (673)
.+||+|||+|.+|+.+|+.++ +. +.+|+||||... .++++....|++...... ....+ .
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa---~~g~g~~V~vleK~~~--------~gg~s~~a~GGi~a~~~~~~~~ds~e--~--- 66 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIK---RLDPSLDVAVVAKTHP--------IRSHSVAAQGGIAASLKNVDPEDSWE--A--- 66 (575)
T ss_pred cccEEEECccHHHHHHHHHHH---HhcCCCcEEEEeccCC--------CchhhHHhccchhhhccCCCCCCCHH--H---
Confidence 479999999999999999998 44 589999999877 233344444444332211 11110 0
Q ss_pred HHHHHHHhhccccCCCCCCcceeecCeEEEeccchH----HHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeE
Q psy10285 319 EFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGA----ATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALA 394 (673)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g 394 (673)
+...+..... .+.+++.. +.....+.++.++|+++.......+... . .........
T Consensus 67 -~~~d~~~~~~-----------------~l~d~~~v~~l~~~a~~~i~~L~~~Gv~f~~~~~g~~~~~-~-~gg~~~~r~ 126 (575)
T PRK05945 67 -HAFDTVKGSD-----------------YLADQDAVAILTQEAPDVIIDLEHLGVLFSRLPDGRIAQR-A-FGGHSHNRT 126 (575)
T ss_pred -HHHHHHHHhC-----------------CCCCHHHHHHHHHHHHHHHHHHHHcCCceEECCCCcEeec-c-ccccccCee
Confidence 1111111000 01111111 1222344456677776554322111000 0 000000111
Q ss_pred EeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEE-EcCCCCeeEEecCE
Q psy10285 395 CLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVV-RDEKGELKTITFAI 472 (673)
Q Consensus 395 ~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V-~t~~G~~~~i~ad~ 472 (673)
.+ +. ......++..|.+.+++.|+++++ +.|++|..++ ++|.|+.+ .+.+|+...+.|+.
T Consensus 127 ~~--~~--~~tG~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~--------------g~v~Gv~~~~~~~g~~~~i~Aka 188 (575)
T PRK05945 127 CY--AA--DKTGHAILHELVNNLRRYGVTIYDEWYVMRLILED--------------NQAKGVVMYHIADGRLEVVRAKA 188 (575)
T ss_pred Ee--cC--CCChHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC--------------CEEEEEEEEEcCCCeEEEEECCE
Confidence 11 11 112367889999999989999985 5999998765 67888654 34566545799999
Q ss_pred EEEcCCCCcHH
Q psy10285 473 CVIAAGAYSGQ 483 (673)
Q Consensus 473 VVlAtG~~s~~ 483 (673)
||+|||+++..
T Consensus 189 VVlATGG~~~~ 199 (575)
T PRK05945 189 VMFATGGYGRV 199 (575)
T ss_pred EEECCCCCcCC
Confidence 99999998753
No 105
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=98.88 E-value=1.9e-09 Score=123.19 Aligned_cols=33 Identities=33% Similarity=0.447 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~ 135 (673)
+|||||||+|++|..+|..++++ |++|+|||++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~---G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMER---GLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC---CCcEEEEeCC
Confidence 69999999999999999999999 9999999975
No 106
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.88 E-value=4e-08 Score=110.15 Aligned_cols=183 Identities=16% Similarity=0.165 Sum_probs=106.6
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHHH
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRN 323 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 323 (673)
.+||+|||+|.+|+.+|+.++ +.|. |+||||.+. ..+++....|++..........+ .++.+
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa---~~G~-V~lleK~~~--------~~g~s~~a~Ggi~~~~~~~ds~e------~~~~d 63 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALA---DQGR-VIVLSKAPV--------TEGNSFYAQGGIAAVLAETDSID------SHVED 63 (488)
T ss_pred CccEEEECccHHHHHHHHHHH---hCCC-EEEEEccCC--------CCCcchhcCcCeeeeecCCCCHH------HHHHH
Confidence 379999999999999999999 7787 999999976 34455556666554332211111 11222
Q ss_pred HHhhccccCCCCCCcceeecCeEEEeccch----HHHHHHHHHHHHHcCCcceeeCHhhHHh-hCCCCCcccceeEEecc
Q psy10285 324 IKHHCHVIGEDEPDVNFTPNGYLFCASQDG----AATLEKNHQLQKELGAKNVLLGPEQLKA-KFPWLNTDDIALACLGL 398 (673)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~l~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~~~~g~~~~ 398 (673)
+.+... + ..+++- .+...+.++++.+.|+++.......+.. .... .... -.+..
T Consensus 64 ~~~~~~--------------~---~~d~~~v~~~~~~~~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg---~~~~-r~~~~ 122 (488)
T TIGR00551 64 TLAAGA--------------G---ICDREAVEFVVSDARSAVQWLVDQGVLFDRHEQGSYALTREGG---HSYR-RILHA 122 (488)
T ss_pred HHHhcC--------------C---cCCHHHHHHHHHhHHHHHHHHHHcCCcceeCCCCCccccCCCC---cCCC-eEEEe
Confidence 211100 0 001111 1122334556667777654322111100 0000 0000 11111
Q ss_pred CCceeeCHHHHHHHHHHHHHH-cCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEc
Q psy10285 399 EKEGWFDPWLYLNAVKKKAIS-LGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIA 476 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~-~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlA 476 (673)
+...+..++..|.+.+++ .|++++. +.|++|..++ ++|.++.+... ++...+.|+.||+|
T Consensus 123 ---~~~~G~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~--------------g~v~Gv~~~~~-~~~~~i~A~~VVlA 184 (488)
T TIGR00551 123 ---ADATGREVITTLVKKALNHPNIRIIEGENALDLLIET--------------GRVVGVWVWNR-ETVETCHADAVVLA 184 (488)
T ss_pred ---CCCCHHHHHHHHHHHHHhcCCcEEEECeEeeeeeccC--------------CEEEEEEEEEC-CcEEEEEcCEEEEC
Confidence 122456888999999987 6999995 5999998764 57778666544 33357899999999
Q ss_pred CCCCcHH
Q psy10285 477 AGAYSGQ 483 (673)
Q Consensus 477 tG~~s~~ 483 (673)
||+++..
T Consensus 185 tGG~~~~ 191 (488)
T TIGR00551 185 TGGAGKL 191 (488)
T ss_pred CCcccCC
Confidence 9999864
No 107
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.87 E-value=5.3e-08 Score=111.30 Aligned_cols=70 Identities=24% Similarity=0.263 Sum_probs=56.3
Q ss_pred ceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEec-CEEEEcCC
Q psy10285 401 EGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITF-AICVIAAG 478 (673)
Q Consensus 401 ~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~a-d~VVlAtG 478 (673)
...+++..++..|.+.+++.|++|+. ++|++|..++ ++|.++.+.+.++ ...++| +.||+|||
T Consensus 211 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~--------------g~v~GV~~~~~~~-~~~i~a~k~VVlAtG 275 (581)
T PRK06134 211 MHLVNGNALVARLLKSAEDLGVRIWESAPARELLRED--------------GRVAGAVVETPGG-LQEIRARKGVVLAAG 275 (581)
T ss_pred CcccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeC--------------CEEEEEEEEECCc-EEEEEeCCEEEEcCC
Confidence 34567888999999999999999995 5999998764 6888877766554 346889 99999999
Q ss_pred CCcHHHH
Q psy10285 479 AYSGQVA 485 (673)
Q Consensus 479 ~~s~~l~ 485 (673)
+|+..+.
T Consensus 276 g~~~n~~ 282 (581)
T PRK06134 276 GFPHDPA 282 (581)
T ss_pred CcccCHH
Confidence 9987554
No 108
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.86 E-value=4e-08 Score=108.23 Aligned_cols=186 Identities=15% Similarity=0.133 Sum_probs=101.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||+|.+|+.+|..++ .|.+|+||||... ..+++....|++........ ...++.
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~----~G~~V~lleK~~~--------~gg~s~~a~ggi~~~~~~d~-------~~~~~~ 63 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR----KDLKILMVSKGKL--------NECNTYLAQGGISVARNKDD-------ITSFVE 63 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc----cCCCEEEEecCCC--------CCCchHHHhHhheeCCCCCC-------HHHHHH
Confidence 3579999999999999999865 5899999999887 33444445555542211111 112222
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCce
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEG 402 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g 402 (673)
.+.+... +.....+ -....+...+.++++.++|+++..-.. .. .+......... -.+ .+.
T Consensus 64 d~~~~g~----------~~~d~~l---v~~~~~~s~e~i~wL~~~Gv~f~~~~~-~~--~~~~~g~~~~~-r~~-~~~-- 123 (433)
T PRK06175 64 DTLKAGQ----------YENNLEA---VKILANESIENINKLIDMGLNFDKDEK-EL--SYTKEGAHSVN-RIV-HFK-- 123 (433)
T ss_pred HHHHHhC----------CCCCHHH---HHHHHHHHHHHHHHHHHcCCccccCCC-ce--eeeccCccccC-eEE-ecC--
Confidence 2211100 0000000 001111223344566667765432211 00 00000000000 111 111
Q ss_pred eeCHHHHHHHHHHHHHH-cCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 403 WFDPWLYLNAVKKKAIS-LGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~-~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
......++..|.+.+++ .|++|+. ++|++|..++ ++|.++.+.. +++...+.|+.||+|||++
T Consensus 124 ~~~g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~--------------~~v~Gv~~~~-~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 124 DNTGKKVEKILLKKVKKRKNITIIENCYLVDIIEND--------------NTCIGAICLK-DNKQINIYSKVTILATGGI 188 (433)
T ss_pred CCChHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC--------------CEEEEEEEEE-CCcEEEEEcCeEEEccCcc
Confidence 12346788889888876 4999995 5999998765 5777865544 4433578999999999997
Q ss_pred cH
Q psy10285 481 SG 482 (673)
Q Consensus 481 s~ 482 (673)
..
T Consensus 189 ~~ 190 (433)
T PRK06175 189 GG 190 (433)
T ss_pred cc
Confidence 65
No 109
>PRK06847 hypothetical protein; Provisional
Probab=98.86 E-value=2.1e-07 Score=100.81 Aligned_cols=64 Identities=22% Similarity=0.173 Sum_probs=51.7
Q ss_pred eeeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 402 GWFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 402 g~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
..++...+.+.|.+.+++.|++++.+ +|++++.+++ ++.|.+.+|+ ++.+|.||.|+|.+
T Consensus 102 ~~i~r~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-----------------~~~v~~~~g~--~~~ad~vI~AdG~~ 162 (375)
T PRK06847 102 GGIMRPALARILADAARAAGADVRLGTTVTAIEQDDD-----------------GVTVTFSDGT--TGRYDLVVGADGLY 162 (375)
T ss_pred ccCcHHHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCC-----------------EEEEEEcCCC--EEEcCEEEECcCCC
Confidence 34667788899999998889999864 8999987664 5667777884 79999999999998
Q ss_pred cHHH
Q psy10285 481 SGQV 484 (673)
Q Consensus 481 s~~l 484 (673)
+..-
T Consensus 163 s~~r 166 (375)
T PRK06847 163 SKVR 166 (375)
T ss_pred cchh
Confidence 7654
No 110
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.86 E-value=4.4e-08 Score=113.02 Aligned_cols=63 Identities=29% Similarity=0.371 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEc-CCCCeeEEecCEEEEcCCCCcHH
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD-EKGELKTITFAICVIAAGAYSGQ 483 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t-~~G~~~~i~ad~VVlAtG~~s~~ 483 (673)
..++..|.+.+++.|+++++ +.|++|..++ ++|.|+.+.+ .+|+...+.|+.||+|||++...
T Consensus 158 ~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~--------------g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG~g~~ 222 (657)
T PRK08626 158 HTMLYAVDNEAIKLGVPVHDRKEAIALIHDG--------------KRCYGAVVRCLITGELRAYVAKATLIATGGYGRI 222 (657)
T ss_pred HHHHHHHHHHHHhCCCEEEeeEEEEEEEEEC--------------CEEEEEEEEEcCCCcEEEEEcCeEEECCCcccCC
Confidence 45677888888899999995 5999999765 6889987775 57766678999999999998764
No 111
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=98.86 E-value=5.9e-08 Score=107.67 Aligned_cols=35 Identities=29% Similarity=0.314 Sum_probs=31.1
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+|+|||+|.+|+++|..|. ..|.+|+++++.+.
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~---~~g~~Vtli~~~~~ 183 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAK---HLGKNVRIIQLEDR 183 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHH---hcCCcEEEEeCCcc
Confidence 478999999999999999998 78999999987654
No 112
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.85 E-value=1.6e-08 Score=111.37 Aligned_cols=37 Identities=27% Similarity=0.297 Sum_probs=34.8
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
-.+++|+|||+|.+|...|..|+ ..|.+|+++.|++.
T Consensus 173 ~~GKrV~VIG~GaSA~di~~~l~---~~ga~vt~~qRs~~ 209 (443)
T COG2072 173 LRGKRVLVIGAGASAVDIAPELA---EVGASVTLSQRSPP 209 (443)
T ss_pred cCCCeEEEECCCccHHHHHHHHH---hcCCeeEEEecCCC
Confidence 47899999999999999999999 88899999999988
No 113
>PLN02815 L-aspartate oxidase
Probab=98.85 E-value=5.5e-08 Score=110.66 Aligned_cols=187 Identities=14% Similarity=0.126 Sum_probs=107.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||+|.+|+.+|+.++ +.| +|+||||... .++++..+.|++.......... ..++.
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aa---e~G-~VvlleK~~~--------~gg~s~~a~Ggi~a~~~~~Ds~------e~~~~ 89 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVA---EYG-TVAIITKDEP--------HESNTNYAQGGVSAVLDPSDSV------ESHMR 89 (594)
T ss_pred cccCEEEECccHHHHHHHHHHh---hCC-CEEEEECCCC--------CCCcHHHhhcccccCCCCCCCH------HHHHH
Confidence 4589999999999999999999 778 8999999887 3445555566554322211111 11222
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccc----hHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEecc
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQD----GAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 398 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~ 398 (673)
++..... + ..+++ ..+.-.+.++++.++|+++..-....+.. .+ .........++
T Consensus 90 d~~~~g~--------------~---~~d~~lv~~~~~~s~e~i~~L~~~Gv~F~~~~~g~~~~-~~-~gg~s~~R~~~-- 148 (594)
T PLN02815 90 DTIVAGA--------------F---LCDEETVRVVCTEGPERVKELIAMGASFDHGEDGNLHL-AR-EGGHSHHRIVH-- 148 (594)
T ss_pred HHHHhcc--------------C---CCcHHHHHHHHHHHHHHHHHHHHhCCeeeecCCCCccc-cC-CCCCccCceee--
Confidence 2211100 0 01111 11222334556667787654221100000 00 00000000011
Q ss_pred CCceeeCHHHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCcc--ceeeEEEE-cCCCCeeEEecCEE
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYH--SVNECVVR-DEKGELKTITFAIC 473 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~--~v~gv~V~-t~~G~~~~i~ad~V 473 (673)
. +......++..|.+.+++. |+++++ +.+++|..+++| + +|.|+.+. ..+|+...+.|+.|
T Consensus 149 ~--~d~tG~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~g------------~~~~v~Gv~~~~~~~g~~~~i~AkaV 214 (594)
T PLN02815 149 A--ADMTGREIERALLEAVKNDPNITFFEHHFAIDLLTSQDG------------GSIVCHGADVLDTRTGEVVRFISKVT 214 (594)
T ss_pred c--CCCCHHHHHHHHHHHHHhcCCCEEEeceEhheeeeecCC------------CccEEEEEEEEEcCCCeEEEEEeceE
Confidence 0 1123467888898888765 899985 699999875431 3 38887664 45676668899999
Q ss_pred EEcCCCCcH
Q psy10285 474 VIAAGAYSG 482 (673)
Q Consensus 474 VlAtG~~s~ 482 (673)
|+|||++..
T Consensus 215 ILATGG~g~ 223 (594)
T PLN02815 215 LLASGGAGH 223 (594)
T ss_pred EEcCCccee
Confidence 999999875
No 114
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.85 E-value=8.4e-08 Score=109.66 Aligned_cols=188 Identities=13% Similarity=0.090 Sum_probs=105.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcc-hhhHHHHHHHHHHH
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLR-ENIEMSLFGAEFLR 322 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~-~~~~~~~~~~~~~~ 322 (673)
.+||+|||+|.+|+.+|+.++ +.|.+|+||||... .++++....|++....... ..... ..++.
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa---~~G~~V~lieK~~~--------~~g~s~~a~Ggi~a~~~~~~~~Ds~----e~~~~ 67 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAA---EAGVHVDLFSLVPV--------KRSHSVCAQGGINGAVNTKGEGDSP----WIHFD 67 (589)
T ss_pred CccEEEECchHHHHHHHHHHH---HcCCcEEEEEccCC--------CCCcccccCCCeEEecCcCCCCCCH----HHHHH
Confidence 469999999999999999999 88999999999987 3445555666665332210 00000 11112
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccchHH----HHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEecc
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAA----TLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 398 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~ 398 (673)
++.+.-. . +.+++-.. ...+.++++.++|+++.......+. .............+
T Consensus 68 d~~~~g~----------------~-~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~--~~~~gg~~~~R~~~-- 126 (589)
T PRK08641 68 DTVYGGD----------------F-LANQPPVKAMCEAAPGIIHLLDRMGVMFNRTPEGLLD--FRRFGGTLHHRTAF-- 126 (589)
T ss_pred HHHHhcC----------------C-cCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcEe--eeccCCeecccccc--
Confidence 2111100 0 01111111 1223455666777765321110000 00000000000000
Q ss_pred CCceeeCHHHHHHHHHHHHHHcC----CeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcC-CCCeeEEecCE
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISLG----AEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE-KGELKTITFAI 472 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~G----v~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~-~G~~~~i~ad~ 472 (673)
.+......++..|.+.+++.+ +++++ +.++++..+++ ++|.|+.+... +|+...+.|+.
T Consensus 127 --~~~~tG~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~-------------g~v~Gv~~~~~~~g~~~~i~Aka 191 (589)
T PRK08641 127 --AGATTGQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE-------------GVCRGIVAQDLFTMEIESFPADA 191 (589)
T ss_pred --cCCCcHHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC-------------CEEEEEEEEECCCCcEEEEECCE
Confidence 111235678888888777654 67774 58999887654 78999777653 45445789999
Q ss_pred EEEcCCCCcH
Q psy10285 473 CVIAAGAYSG 482 (673)
Q Consensus 473 VVlAtG~~s~ 482 (673)
||+|||+++.
T Consensus 192 VILATGG~~~ 201 (589)
T PRK08641 192 VIMATGGPGI 201 (589)
T ss_pred EEECCCCCcC
Confidence 9999999886
No 115
>PRK08244 hypothetical protein; Provisional
Probab=98.84 E-value=1.1e-06 Score=99.02 Aligned_cols=70 Identities=34% Similarity=0.343 Sum_probs=48.8
Q ss_pred CHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHH
Q psy10285 405 DPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQ 483 (673)
Q Consensus 405 ~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~ 483 (673)
.-..+-+.|.+.+++.|++++. ++|++++.+++ .+ .+.+.+.+| ..+++||.||.|.|.+|.
T Consensus 98 ~q~~le~~L~~~~~~~gv~v~~~~~v~~i~~~~~--------------~v-~v~~~~~~g-~~~i~a~~vVgADG~~S~- 160 (493)
T PRK08244 98 PQAETEKVLEEHARSLGVEIFRGAEVLAVRQDGD--------------GV-EVVVRGPDG-LRTLTSSYVVGADGAGSI- 160 (493)
T ss_pred cHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEcCC--------------eE-EEEEEeCCc-cEEEEeCEEEECCCCChH-
Confidence 3345667777888888999985 49999987764 11 123333445 247999999999999874
Q ss_pred HHHHcCCC
Q psy10285 484 VARMLKIG 491 (673)
Q Consensus 484 l~~~~g~~ 491 (673)
+-+.+++.
T Consensus 161 vR~~lgi~ 168 (493)
T PRK08244 161 VRKQAGIA 168 (493)
T ss_pred HHHhcCCC
Confidence 65666653
No 116
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.84 E-value=7.2e-08 Score=109.47 Aligned_cols=191 Identities=15% Similarity=0.196 Sum_probs=106.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||+|.+|+.+|+.+. .|.+|+|+||... ..++++....|++.......... ..++.
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A~----~G~~VilleK~~~-------~~gG~s~~a~gg~~~~~~~~d~~------~~~~~ 68 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEAE----RGKNVVIVSKGLF-------GKSGCTVMAEGGYNAVLNPEDSF------EKHFE 68 (543)
T ss_pred eccCEEEECccHHHHHHHHHHh----cCCCEEEEEccCC-------CCCccccccCceEEEeCCCCCCH------HHHHH
Confidence 4589999999999999999873 4789999999865 23445555556554332221111 11122
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCce
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEG 402 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g 402 (673)
++..... +.....+ -..-.+.....++++..+|+++.......+... + .....+...++ ..
T Consensus 69 d~~~~~~----------~~~d~~l---v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~-~-~~g~~~~r~~~--~~-- 129 (543)
T PRK06263 69 DTMKGGA----------YLNDPKL---VEILVKEAPKRLKDLEKFGALFDRTEDGEIAQR-P-FGGQSFNRTCY--AG-- 129 (543)
T ss_pred HHHHHhc----------CCCCHHH---HHHHHHHHHHHHHHHHHcCCcceeCCCCceeec-c-cCCeEcCeEEE--CC--
Confidence 2211000 0000000 001111223344556677766542211100000 0 00000001111 11
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEc-CCCCeeEEecCEEEEcCCCC
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD-EKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t-~~G~~~~i~ad~VVlAtG~~ 480 (673)
......++..|.+.+++.|++++. +.|++|..+++ ++|.|+.+.. .+|+...+.|+.||+|||++
T Consensus 130 ~~~G~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~-------------~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 130 DRTGHEMMMGLMEYLIKERIKILEEVMAIKLIVDEN-------------REVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred CCCHHHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC-------------cEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 112457888898888889999995 59999987663 4588876654 67765689999999999998
Q ss_pred cH
Q psy10285 481 SG 482 (673)
Q Consensus 481 s~ 482 (673)
..
T Consensus 197 ~~ 198 (543)
T PRK06263 197 GQ 198 (543)
T ss_pred CC
Confidence 74
No 117
>PRK10262 thioredoxin reductase; Provisional
Probab=98.83 E-value=8.1e-09 Score=109.45 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=33.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+++|+|||+|.+|+++|..|+ ..+.+|+++++.+.
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~---~~~~~Vtlv~~~~~ 180 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLS---NIASEVHLIHRRDG 180 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hhCCEEEEEEECCc
Confidence 5678999999999999999999 88999999998765
No 118
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.83 E-value=7.8e-08 Score=109.89 Aligned_cols=63 Identities=25% Similarity=0.283 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecC-EEEEcCCCCcHH
Q psy10285 406 PWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFA-ICVIAAGAYSGQ 483 (673)
Q Consensus 406 ~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad-~VVlAtG~~s~~ 483 (673)
...++..|.+.+++.|++|+. ++|++|..++ ++|.++.+...++. ..+.++ .||+|||+++..
T Consensus 213 G~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~--------------g~V~GV~~~~~~~~-~~i~a~k~VVlAtGg~~~n 277 (574)
T PRK12842 213 GNALAARLAKSALDLGIPILTGTPARELLTEG--------------GRVVGARVIDAGGE-RRITARRGVVLACGGFSHD 277 (574)
T ss_pred HHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--------------CEEEEEEEEcCCce-EEEEeCCEEEEcCCCccch
Confidence 356788888999999999995 5999998765 68888777655552 457885 799999999843
No 119
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.83 E-value=1e-08 Score=115.79 Aligned_cols=36 Identities=22% Similarity=0.176 Sum_probs=33.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+++|+|||+|.+|+++|..|+ ..+.+|+++++++.
T Consensus 350 ~gk~VvVVGgG~~g~e~A~~L~---~~~~~Vtlv~~~~~ 385 (517)
T PRK15317 350 KGKRVAVIGGGNSGVEAAIDLA---GIVKHVTVLEFAPE 385 (517)
T ss_pred CCCEEEEECCCHHHHHHHHHHH---hcCCEEEEEEECcc
Confidence 5689999999999999999999 88999999998776
No 120
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.83 E-value=5.9e-08 Score=109.91 Aligned_cols=184 Identities=12% Similarity=0.141 Sum_probs=104.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||+|.+|+.+|+.++ . |.+|+||||... .++++..+.|++.......... ..++.
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~---~-G~~V~lieK~~~--------~gg~s~~a~Ggi~a~~~~~ds~------e~~~~ 69 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP---S-HLRVGLITKDTL--------KTSASDWAQGGIAAAIAPDDSP------KLHYE 69 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh---c-CCCEEEEEccCC--------CCCchhhhcccceecccCCCCH------HHHHH
Confidence 5689999999999999999986 5 889999999887 3445555555554332211111 11222
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccch----HHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEecc
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDG----AATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 398 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~ 398 (673)
++.+... + ..+++- .+.....++++.++|+++...+.. . ...+. .......... .
T Consensus 70 d~~~~g~--------------~---~~d~~lv~~~~~~s~~~i~wL~~~Gv~f~~~~~~-~-~~~~~-~g~s~~r~~~-~ 128 (553)
T PRK07395 70 DTLKAGA--------------G---LCDPEAVRFLVEQAPEAIASLVEMGVAFDRHGQH-L-ALTLE-AAHSRPRVLH-A 128 (553)
T ss_pred HHHHhcC--------------C---CCCHHHHHHHHHHHHHHHHHHHhcCCeeecCCCc-e-eeecc-cccccCeEEE-e
Confidence 2221111 0 001111 122233455666777765422110 0 00000 0000000111 1
Q ss_pred CCceeeCHHHHHHHHHHHHHHc-CCeEEE-eceeEEEecC-CccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEE
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISL-GAEYVR-GEVVDFLRRR-NNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVI 475 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~-~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVl 475 (673)
. .-....++..|.+.+++. |++++. +.|++|..++ + ++|.|+.+.. +|....+.|+.||+
T Consensus 129 -~--d~~G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~-------------g~v~Gv~~~~-~g~~~~i~AkaVIL 191 (553)
T PRK07395 129 -A--DTTGRAIVTTLTEQVLQRPNIEIISQALALSLWLEPET-------------GRCQGISLLY-QGQITWLRAGAVIL 191 (553)
T ss_pred -C--CCChHHHHHHHHHHHhhcCCcEEEECcChhhheecCCC-------------CEEEEEEEEE-CCeEEEEEcCEEEE
Confidence 0 012357888888888765 999995 5999998763 3 6788876553 56445689999999
Q ss_pred cCCCCcH
Q psy10285 476 AAGAYSG 482 (673)
Q Consensus 476 AtG~~s~ 482 (673)
|||++..
T Consensus 192 ATGG~~~ 198 (553)
T PRK07395 192 ATGGGGQ 198 (553)
T ss_pred cCCCCcc
Confidence 9999754
No 121
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.83 E-value=6.8e-08 Score=110.41 Aligned_cols=188 Identities=15% Similarity=0.151 Sum_probs=104.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCC---CeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDG---CRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAE 319 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g---~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~ 319 (673)
..+||+|||+|.+|+.+|+.++ +.| .+|+||||... .++++....|++..............
T Consensus 4 ~~~DVlVVG~G~AGl~AA~~Aa---~~G~~~~~V~lleK~~~--------~~~~s~~a~Gg~~a~~~~~~~ds~e~---- 68 (577)
T PRK06069 4 LKYDVVIVGSGLAGLRAAVAAA---ERSGGKLSVAVVSKTQP--------MRSHSVSAEGGTAAVLYPEKGDSFDL---- 68 (577)
T ss_pred eecCEEEECccHHHHHHHHHHH---HhCCCCCcEEEEEcccC--------CCCCceecccccceeeccccCCCHHH----
Confidence 4579999999999999999999 676 89999999887 33445555555543222100000000
Q ss_pred HHHHHHhhccccCCCCCCcceeecCeEEEeccc----hHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEE
Q psy10285 320 FLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQD----GAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALAC 395 (673)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~ 395 (673)
++..+..... + ..+++ -.+...+.++++.++|+++.......+.. .+ ..........
T Consensus 69 ~~~d~~~~g~--------------~---~~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~~~~-~~-~~g~~~~r~~ 129 (577)
T PRK06069 69 HAYDTVKGSD--------------F---LADQDAVEVFVREAPEEIRFLDHWGVPWSRRPDGRISQ-RP-FGGMSFPRTT 129 (577)
T ss_pred HHHHHHHhhc--------------c---cCCHHHHHHHHHHHHHHHHHHHHcCCeeEecCCCcEee-ee-cCCcccceee
Confidence 1111111000 0 01111 11122334556667787654321110000 00 0000000011
Q ss_pred eccCCceeeCHHHHHHHHHHHHHH-cCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEc-CCCCeeEEecCE
Q psy10285 396 LGLEKEGWFDPWLYLNAVKKKAIS-LGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD-EKGELKTITFAI 472 (673)
Q Consensus 396 ~~~~~~g~i~~~~~~~~l~~~~~~-~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t-~~G~~~~i~ad~ 472 (673)
+ .. .-....++..|.+.+++ .|++++. +.|+++..++ ++|.|+.+.+ .+|+...+.|+.
T Consensus 130 ~-~~---d~tG~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~--------------g~v~Gv~~~~~~~g~~~~i~Ak~ 191 (577)
T PRK06069 130 F-AA---DKTGFYIMHTLYSRALRFDNIHFYDEHFVTSLIVEN--------------GVFKGVTAIDLKRGEFKVFQAKA 191 (577)
T ss_pred E-cC---CCchHHHHHHHHHHHHhcCCCEEEECCEEEEEEEEC--------------CEEEEEEEEEcCCCeEEEEECCc
Confidence 1 00 01235688888888876 5899985 5899998765 6788876543 466545789999
Q ss_pred EEEcCCCCcH
Q psy10285 473 CVIAAGAYSG 482 (673)
Q Consensus 473 VVlAtG~~s~ 482 (673)
||+|||+++.
T Consensus 192 VIlATGG~~~ 201 (577)
T PRK06069 192 GIIATGGAGR 201 (577)
T ss_pred EEEcCchhcc
Confidence 9999999864
No 122
>PRK06834 hypothetical protein; Provisional
Probab=98.83 E-value=4.5e-07 Score=101.48 Aligned_cols=65 Identities=22% Similarity=0.144 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHHHH
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQVA 485 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~l~ 485 (673)
..+...|.+.+++.|++++. ++|++++.+++ ++.|++.+|+ +++||.||.|.|.+| .+-
T Consensus 100 ~~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~-----------------~v~v~~~~g~--~i~a~~vVgADG~~S-~vR 159 (488)
T PRK06834 100 NHIERILAEWVGELGVPIYRGREVTGFAQDDT-----------------GVDVELSDGR--TLRAQYLVGCDGGRS-LVR 159 (488)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC-----------------eEEEEECCCC--EEEeCEEEEecCCCC-CcH
Confidence 45667788888888999995 59999988764 5667777773 899999999999998 466
Q ss_pred HHcCCC
Q psy10285 486 RMLKIG 491 (673)
Q Consensus 486 ~~~g~~ 491 (673)
+.+|+.
T Consensus 160 ~~lgi~ 165 (488)
T PRK06834 160 KAAGID 165 (488)
T ss_pred hhcCCC
Confidence 677754
No 123
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.82 E-value=6.9e-07 Score=97.33 Aligned_cols=70 Identities=23% Similarity=0.318 Sum_probs=52.0
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcC------CCCeeEEecCEEEEc
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE------KGELKTITFAICVIA 476 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~------~G~~~~i~ad~VVlA 476 (673)
.++...+-+.|.+.+.+.|++++.+.|+++..+++ ++.|... +|+..+++||.||.|
T Consensus 88 ~~~r~~fd~~L~~~a~~~G~~v~~~~v~~v~~~~~-----------------~~~v~~~~~~~~~~~~~~~i~a~~VI~A 150 (388)
T TIGR02023 88 MVRREVFDSYLRERAQKAGAELIHGLFLKLERDRD-----------------GVTLTYRTPKKGAGGEKGSVEADVVIGA 150 (388)
T ss_pred eeeHHHHHHHHHHHHHhCCCEEEeeEEEEEEEcCC-----------------eEEEEEEeccccCCCcceEEEeCEEEEC
Confidence 46777888899999999999998778999887663 3334332 233357999999999
Q ss_pred CCCCcHHHHHHcCC
Q psy10285 477 AGAYSGQVARMLKI 490 (673)
Q Consensus 477 tG~~s~~l~~~~g~ 490 (673)
+|.++. +.+.+++
T Consensus 151 dG~~S~-v~r~lg~ 163 (388)
T TIGR02023 151 DGANSP-VAKELGL 163 (388)
T ss_pred CCCCcH-HHHHcCC
Confidence 998874 5566664
No 124
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.82 E-value=1.1e-08 Score=112.17 Aligned_cols=110 Identities=18% Similarity=0.317 Sum_probs=80.5
Q ss_pred CCccccEEEECCChHHHHHHHHHHHhcCCC-ceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCcccccccC
Q psy10285 97 FPTHVDILIIGGGAIGSSIAYFIKEKVLDG-CRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPTQESKVSD 175 (673)
Q Consensus 97 ~~~~~dvviiG~G~~G~~~A~~l~~~~~~g-~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~ 175 (673)
.+.++||+|||||++|+++||+|++.. | .+|+|||++.. +.++++++.+.+...........+..
T Consensus 27 ~~~~~dvvIIGgGi~G~s~A~~L~~~~--g~~~V~vle~~~~------------~~gas~~~~g~~~~~~~~~~~~~~~~ 92 (407)
T TIGR01373 27 PKPTYDVIIVGGGGHGLATAYYLAKEH--GITNVAVLEKGWL------------GGGNTGRNTTIVRSNYLYPESAELYE 92 (407)
T ss_pred CCccCCEEEECCcHHHHHHHHHHHHhc--CCCeEEEEEcccc------------cCcccccccceeeecccCccccHHHH
Confidence 345799999999999999999999842 7 58999999864 66677777777754333223345566
Q ss_pred chHHHHHhhcccccCCcc-CCCceEEEeeCchhhHHHH----Hhhhcccc
Q psy10285 176 PHKALKETTNRYSFNDAE-APSGYVDPAKTDEHYHIKR----AMRILKLD 220 (673)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~-~~~g~l~v~~~~~~~~~~~----~~~~~g~~ 220 (673)
.+.++|+++.+..+.++. .++|.|.++.++++.+... .+...+.+
T Consensus 93 ~s~~l~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~g~~ 142 (407)
T TIGR01373 93 HAMKLWEGLSQDLNYNVMFSQRGVLNLCHSTADMDDGARRVNAMRLNGVD 142 (407)
T ss_pred HHHHHHHHHHHHhCCCcCEEeccEEEEeCCHHHHHHHHHHHHHHHHcCCC
Confidence 788889888776666666 7899999998877655554 23444554
No 125
>PRK06184 hypothetical protein; Provisional
Probab=98.82 E-value=3.5e-07 Score=103.11 Aligned_cols=65 Identities=25% Similarity=0.276 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEc---CCCCeeEEecCEEEEcCCCCcH
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD---EKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t---~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
..+...|.+.+.+.|++++. ++|++++.+++ ++.+.. .++ .+++||.||.|.|.+|.
T Consensus 109 ~~le~~L~~~l~~~gv~i~~~~~v~~i~~~~~-----------------~v~v~~~~~~~~--~~i~a~~vVgADG~~S~ 169 (502)
T PRK06184 109 WRTERILRERLAELGHRVEFGCELVGFEQDAD-----------------GVTARVAGPAGE--ETVRARYLVGADGGRSF 169 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEEEEEcCC-----------------cEEEEEEeCCCe--EEEEeCEEEECCCCchH
Confidence 45667788888888999985 49999987764 333333 333 58999999999999984
Q ss_pred HHHHHcCCC
Q psy10285 483 QVARMLKIG 491 (673)
Q Consensus 483 ~l~~~~g~~ 491 (673)
+-+.+++.
T Consensus 170 -vR~~lgi~ 177 (502)
T PRK06184 170 -VRKALGIG 177 (502)
T ss_pred -HHHhCCCC
Confidence 66667654
No 126
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.82 E-value=3.6e-08 Score=112.49 Aligned_cols=61 Identities=13% Similarity=0.208 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecC-EEEEcCCCCcH
Q psy10285 408 LYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFA-ICVIAAGAYSG 482 (673)
Q Consensus 408 ~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad-~VVlAtG~~s~ 482 (673)
.++..|.+.+++.|++|+ +++|++|..+++ |+|.|+.+.. +|+...++|+ .||+|||++..
T Consensus 214 ~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~-------------g~V~Gv~~~~-~~~~~~i~a~~aVilAtGGf~~ 276 (584)
T PRK12835 214 SLVARLRLALKDAGVPLWLDSPMTELITDPD-------------GAVVGAVVER-EGRTLRIGARRGVILATGGFDH 276 (584)
T ss_pred HHHHHHHHHHHhCCceEEeCCEEEEEEECCC-------------CcEEEEEEEe-CCcEEEEEeceeEEEecCcccC
Confidence 455667788888899999 569999998765 7899987754 5555678997 59999999874
No 127
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.81 E-value=3.4e-07 Score=100.33 Aligned_cols=69 Identities=14% Similarity=0.211 Sum_probs=54.2
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
.++...+...|.+.+++.|++++. ++|++++.+++ ++.|.+.+| .+++||.||.|.|.++
T Consensus 108 ~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~-----------------~v~v~~~~g--~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 108 IVENRVVQDALLERLHDSDIGLLANARLEQMRRSGD-----------------DWLLTLADG--RQLRAPLVVAADGANS 168 (405)
T ss_pred EEEhHHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCC-----------------eEEEEECCC--CEEEeCEEEEecCCCc
Confidence 355567778888888888999985 49999987764 566777777 4799999999999998
Q ss_pred HHHHHHcCCC
Q psy10285 482 GQVARMLKIG 491 (673)
Q Consensus 482 ~~l~~~~g~~ 491 (673)
.+-+.+++.
T Consensus 169 -~vR~~lg~~ 177 (405)
T PRK05714 169 -AVRRLAGCA 177 (405)
T ss_pred -hhHHhcCCC
Confidence 466666653
No 128
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.81 E-value=1.4e-07 Score=96.37 Aligned_cols=69 Identities=26% Similarity=0.213 Sum_probs=52.3
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEc----CCC---CeeEEecCEEE
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD----EKG---ELKTITFAICV 474 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t----~~G---~~~~i~ad~VV 474 (673)
.+++..+...|.+.+++.|+++++. .|+++..+++ ++|.++.+.. .+| ...+++|+.||
T Consensus 100 ~vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~-------------g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI 166 (257)
T PRK04176 100 VADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILRED-------------PRVAGVVINWTPVEMAGLHVDPLTIEAKAVV 166 (257)
T ss_pred eccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCC-------------CcEEEEEEccccccccCCCCCcEEEEcCEEE
Confidence 4577899999999999999999964 8999987653 4777765432 111 22589999999
Q ss_pred EcCCCCcHHH
Q psy10285 475 IAAGAYSGQV 484 (673)
Q Consensus 475 lAtG~~s~~l 484 (673)
+|||.++...
T Consensus 167 ~ATG~~a~v~ 176 (257)
T PRK04176 167 DATGHDAEVV 176 (257)
T ss_pred EEeCCCcHHH
Confidence 9999987633
No 129
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.81 E-value=8.1e-07 Score=100.22 Aligned_cols=56 Identities=23% Similarity=0.173 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
..+++.|.+.+++.|++|+. ++|++|..++ +++.+ |++.+|+ +++||.||+|++..
T Consensus 219 ~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~--------------~~~~~--V~~~~g~--~~~ad~VI~a~~~~ 275 (502)
T TIGR02734 219 GALVAAMAKLAEDLGGELRLNAEVIRIETEG--------------GRATA--VHLADGE--RLDADAVVSNADLH 275 (502)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEEEEeeC--------------CEEEE--EEECCCC--EEECCEEEECCcHH
Confidence 68899999999999999995 5999998765 34444 7777773 78999999999864
No 130
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.81 E-value=5e-07 Score=98.48 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=52.5
Q ss_pred eCHHHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 404 FDPWLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
++...+.+.|.+.+.+. |++++. ++|+++..+++ ++.|.+.+|+ +++||.||.|.|.++
T Consensus 109 i~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~-----------------~~~v~~~~g~--~~~a~~vI~AdG~~S 169 (391)
T PRK08020 109 VENRVLQLALWQALEAHPNVTLRCPASLQALQRDDD-----------------GWELTLADGE--EIQAKLVIGADGANS 169 (391)
T ss_pred EEcHHHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCC-----------------eEEEEECCCC--EEEeCEEEEeCCCCc
Confidence 45567778888888776 999985 58999987664 5667777773 899999999999998
Q ss_pred HHHHHHcCCC
Q psy10285 482 GQVARMLKIG 491 (673)
Q Consensus 482 ~~l~~~~g~~ 491 (673)
. +.+.+++.
T Consensus 170 ~-vR~~~~~~ 178 (391)
T PRK08020 170 Q-VRQMAGIG 178 (391)
T ss_pred h-hHHHcCCC
Confidence 5 66666643
No 131
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.80 E-value=2.9e-07 Score=100.02 Aligned_cols=69 Identities=16% Similarity=0.156 Sum_probs=54.8
Q ss_pred eeCHHHHHHHHHHHHHH-cCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 403 WFDPWLYLNAVKKKAIS-LGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~-~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
.++...+.+.|.+.+.+ .|++++ .++|++++.+++ ++.|.+.+|+ +++||.||.|.|.+
T Consensus 101 ~i~r~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~-----------------~~~v~~~~g~--~~~ad~vV~AdG~~ 161 (382)
T TIGR01984 101 VVELADLGQALLSRLALLTNIQLYCPARYKEIIRNQD-----------------YVRVTLDNGQ--QLRAKLLIAADGAN 161 (382)
T ss_pred EEEcHHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCC-----------------eEEEEECCCC--EEEeeEEEEecCCC
Confidence 35667899999999988 499999 569999987764 5667777773 79999999999998
Q ss_pred cHHHHHHcCCC
Q psy10285 481 SGQVARMLKIG 491 (673)
Q Consensus 481 s~~l~~~~g~~ 491 (673)
+. +.+.+++.
T Consensus 162 S~-vr~~l~~~ 171 (382)
T TIGR01984 162 SK-VRELLSIP 171 (382)
T ss_pred hH-HHHHcCCC
Confidence 75 66666653
No 132
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=98.80 E-value=1.3e-08 Score=114.72 Aligned_cols=36 Identities=25% Similarity=0.214 Sum_probs=32.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+++|+|||+|.+|+++|..|+ ..+.+|+++++.+.
T Consensus 351 ~~k~VvViGgG~~g~E~A~~L~---~~g~~Vtli~~~~~ 386 (515)
T TIGR03140 351 KGKDVAVIGGGNSGIEAAIDLA---GIVRHVTVLEFADE 386 (515)
T ss_pred CCCEEEEECCcHHHHHHHHHHH---hcCcEEEEEEeCCc
Confidence 4679999999999999999999 88999999997666
No 133
>PRK12839 hypothetical protein; Provisional
Probab=98.80 E-value=7e-08 Score=109.75 Aligned_cols=67 Identities=15% Similarity=0.203 Sum_probs=54.2
Q ss_pred eCHHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 404 FDPWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
+++..++..|.+.+++.|++|+ ++.|++|..+++ ++|.++.+...+|+...+.++.||+|||+|+.
T Consensus 211 ~~g~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~-------------g~V~GV~~~~~~g~~~i~aak~VVLAtGGf~~ 277 (572)
T PRK12839 211 VNGTALTGRLLRSADDLGVDLRVSTSATSLTTDKN-------------GRVTGVRVQGPDGAVTVEATRGVVLATGGFPN 277 (572)
T ss_pred ccHHHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC-------------CcEEEEEEEeCCCcEEEEeCCEEEEcCCCccc
Confidence 4678889999999999999999 569999987654 78999887777775334455899999999987
Q ss_pred H
Q psy10285 483 Q 483 (673)
Q Consensus 483 ~ 483 (673)
.
T Consensus 278 n 278 (572)
T PRK12839 278 D 278 (572)
T ss_pred C
Confidence 3
No 134
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.79 E-value=1.1e-07 Score=108.89 Aligned_cols=178 Identities=17% Similarity=0.189 Sum_probs=101.9
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccC--CCeEEEEecCCCCCCCcccccccccccccC--ceecccCcchhhHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLD--GCRVAVVDRDFTVNYDLDEYARASTTLSVG--GLRQQFSLRENIEMSLFGA 318 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~--g~~v~~ie~~~~~~~~~~~~~~~st~~~~g--~i~~~~~~~~~~~~~~~~~ 318 (673)
..+||+|||+|.+|+.+|+.++ .. |.+|+||||... ..+++ ...| .+.......... .
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aa---e~~~G~~V~lieK~~~-------~~s~~--~a~G~~~~~~~~~~~ds~------e 71 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAK---EWAPDLKVLIVEKANI-------KRSGA--VAQGLSAINAYIGEGETP------E 71 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHH---HhCCCCeEEEEECCCc-------CCCcc--cccCccccccccccCCCH------H
Confidence 4589999999999999999998 66 899999999886 11111 1112 122111111100 0
Q ss_pred HHHHHHHhhccccCCCCCCcceeecCeEEEecc----chHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeE
Q psy10285 319 EFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQ----DGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALA 394 (673)
Q Consensus 319 ~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g 394 (673)
.+++.+..... + ..++ ...+...+.++++...|+++....... ..+ .+
T Consensus 72 ~~~~d~~~~~~--------------~---~~d~~lv~~~~~~s~~~i~~L~~~Gv~f~~~~~G~---~~~--------~g 123 (608)
T PRK06854 72 DYVRYVRKDLM--------------G---IVREDLVYDIARHVDSVVHLFEEWGLPIWKDENGK---YVR--------RG 123 (608)
T ss_pred HHHHHHHHhcc--------------C---CCCHHHHHHHHHhHHHHHHHHHHcCCeeeecCCCC---ccc--------cC
Confidence 11222211100 0 0011 111223344556667777654211100 000 00
Q ss_pred EeccCCceeeCHHHHHHHHHHHHHHcC-CeEEE-eceeEEEecCCccccccCCCCCCccceeeEEE-EcCCCCeeEEecC
Q psy10285 395 CLGLEKEGWFDPWLYLNAVKKKAISLG-AEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVV-RDEKGELKTITFA 471 (673)
Q Consensus 395 ~~~~~~~g~i~~~~~~~~l~~~~~~~G-v~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V-~t~~G~~~~i~ad 471 (673)
.. ...+++..+...|.+.+++.| ++++. +.|++|..++ ++|.|+.+ .+.+|+...+.|+
T Consensus 124 ~~----~~~~~G~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~--------------g~v~Gv~~~~~~~g~~~~i~Ak 185 (608)
T PRK06854 124 RW----QIMINGESYKPIVAEAAKKALGDNVLNRVFITDLLVDD--------------NRIAGAVGFSVRENKFYVFKAK 185 (608)
T ss_pred Cc----cCCCChHHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC--------------CEEEEEEEEEccCCcEEEEECC
Confidence 00 002356678888888888875 99995 5999998765 57878654 3456655689999
Q ss_pred EEEEcCCCCcHHH
Q psy10285 472 ICVIAAGAYSGQV 484 (673)
Q Consensus 472 ~VVlAtG~~s~~l 484 (673)
.||+|||+++...
T Consensus 186 aVILATGG~~~~~ 198 (608)
T PRK06854 186 AVIVATGGAAGIY 198 (608)
T ss_pred EEEECCCchhhcc
Confidence 9999999987643
No 135
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.79 E-value=1.2e-07 Score=116.24 Aligned_cols=197 Identities=14% Similarity=0.209 Sum_probs=107.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcc-hhhHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLR-ENIEMSLFGAEFL 321 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~-~~~~~~~~~~~~~ 321 (673)
..+||+|||+|.+|+.+|...+ ..|.+|+|+||... .+|++..+.|++....... ..... ....+.+
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aa---e~Ga~VivlEK~~~--------~GG~s~~s~ggi~~~~t~~q~~~gi-~D~~~~~ 475 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAA---SCGAQVILLEKEAK--------LGGNSAKATSGINGWGTRAQAKQDV-LDGGKFF 475 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHH---HCCCcEEEEEccCC--------CCCchhhcccccccCCchhhhhhcc-cccHHHH
Confidence 4689999999999999999999 78999999999877 3344444445443211100 00000 0011111
Q ss_pred -HHHHhhccccCCCCCCcceeecCeEEEeccc----hHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEe
Q psy10285 322 -RNIKHHCHVIGEDEPDVNFTPNGYLFCASQD----GAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACL 396 (673)
Q Consensus 322 -~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~ 396 (673)
..+.... .+. ..+++ ..+.....++++.++|+++..... +....... ...
T Consensus 476 ~~d~~~~~--------------~~~--~~d~~lv~~~~~~s~e~idwL~~~Gv~f~~~~~------~gg~~~~r---~~~ 530 (1167)
T PTZ00306 476 ERDTHLSG--------------KGG--HCDPGLVKTLSVKSADAISWLSSLGVPLTVLSQ------LGGASRKR---CHR 530 (1167)
T ss_pred HHHHHHhc--------------cCC--CCCHHHHHHHHHhhHHHHHHHHHcCCCceeeec------cCCCCCCc---eee
Confidence 1111000 000 01111 112223345566777877654321 00000000 000
Q ss_pred ccCC--cee-e-CHHHHHHHHHHHHHH---cCCeEEE-eceeEEEecCCccccccCCCCC-CccceeeEEEEcC---CCC
Q psy10285 397 GLEK--EGW-F-DPWLYLNAVKKKAIS---LGAEYVR-GEVVDFLRRRNNQVHYEGYDDG-EYHSVNECVVRDE---KGE 464 (673)
Q Consensus 397 ~~~~--~g~-i-~~~~~~~~l~~~~~~---~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~-~~~~v~gv~V~t~---~G~ 464 (673)
.+. .+. . ....++..|.+.+++ .|++|+. ++|++|..+++ |..++ .-++|.|+.++.. +|+
T Consensus 531 -~~~~~~g~~~~~G~~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~------~~~~G~~~~~V~Gv~~~~~~~~~g~ 603 (1167)
T PTZ00306 531 -APDKKDGTPVPIGFTIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESS------ARPDGVREIRVTGVRYKQASDASGQ 603 (1167)
T ss_pred -cCcccCCCcCCcHHHHHHHHHHHHHhhccCCcEEEECCEEEEEEecCC------cccCCCccceEEEEEEEecccCCCc
Confidence 010 111 1 135567777777765 4999995 69999997642 00000 0137999888765 777
Q ss_pred eeEEecCEEEEcCCCCcHH
Q psy10285 465 LKTITFAICVIAAGAYSGQ 483 (673)
Q Consensus 465 ~~~i~ad~VVlAtG~~s~~ 483 (673)
...++|+.||+|||++...
T Consensus 604 ~~~i~AkaVILATGGf~~N 622 (1167)
T PTZ00306 604 VMDLLADAVILATGGFSND 622 (1167)
T ss_pred EEEEEeceEEEecCCcccC
Confidence 6789999999999999873
No 136
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=1.2e-07 Score=109.02 Aligned_cols=188 Identities=18% Similarity=0.196 Sum_probs=106.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcch-hhHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRE-NIEMSLFGAEFL 321 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~-~~~~~~~~~~~~ 321 (673)
..+||+|||+|.+|+.+|..++ ..|.+|+||||... ..++|....|++........ ...... ++
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aa---e~G~~V~lieK~~~--------~~g~s~~a~Ggi~a~~~~~~~~ds~~~----~~ 71 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEAR---ERGLRVAVVCKSLF--------GKAHTVMAEGGCAAAMGNVNPKDNWQV----HF 71 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHH---HCCCCEEEEeccCC--------CCCcceecCccceeeccCCCCCCCHHH----HH
Confidence 4589999999999999999999 88999999999877 34455556666554332110 000001 11
Q ss_pred HHHHhhccccCCCCCCcceeecCeEEEeccch----HHHHHHHHHHHHHcCCcceeeCHhhHHh-hCCCCCcccceeEEe
Q psy10285 322 RNIKHHCHVIGEDEPDVNFTPNGYLFCASQDG----AATLEKNHQLQKELGAKNVLLGPEQLKA-KFPWLNTDDIALACL 396 (673)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~l~~~~~~~~~~g~~~~~l~~~~~~~-~~p~~~~~~~~~g~~ 396 (673)
.+..+.-. + +.+++- .+.-...+.++.++|+++.......+.. .+... .+....+
T Consensus 72 ~D~~~~g~----------~-------l~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~---~~~r~~~ 131 (626)
T PRK07803 72 RDTMRGGK----------F-------LNNWRMAELHAKEAPDRVWELETYGALFDRTKDGRISQRNFGGH---TYPRLAH 131 (626)
T ss_pred HHHHHHhc----------c-------CCcHHHHHHHHHHhHHHHHHHHHCCCceEecCCCceeeeecCCc---ccCeEEe
Confidence 11111000 0 001110 1112223345667787665322111100 00000 0000011
Q ss_pred ccCCceeeCHHHHHHHHHHHHHHc--------C-----CeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cC
Q psy10285 397 GLEKEGWFDPWLYLNAVKKKAISL--------G-----AEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DE 461 (673)
Q Consensus 397 ~~~~~g~i~~~~~~~~l~~~~~~~--------G-----v~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~ 461 (673)
. +......++..|.+.+++. | ++++. +.|++|..++ ++|.|+.+. ..
T Consensus 132 -~---~~~tG~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~--------------g~v~Gv~~~~~~ 193 (626)
T PRK07803 132 -V---GDRTGLELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG--------------GRIAGAFGYWRE 193 (626)
T ss_pred -c---CCCcHHHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC--------------CEEEEEEEEECC
Confidence 0 1112467888888888776 6 99985 5999998764 678886554 34
Q ss_pred CCCeeEEecCEEEEcCCCCcHH
Q psy10285 462 KGELKTITFAICVIAAGAYSGQ 483 (673)
Q Consensus 462 ~G~~~~i~ad~VVlAtG~~s~~ 483 (673)
+|+...+.|+.||+|||++...
T Consensus 194 ~g~~~~i~Ak~VVlATGG~~~~ 215 (626)
T PRK07803 194 SGRFVLFEAPAVVLATGGIGKS 215 (626)
T ss_pred CCeEEEEEcCeEEECCCcccCC
Confidence 6655679999999999997643
No 137
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.79 E-value=1.6e-07 Score=113.41 Aligned_cols=36 Identities=33% Similarity=0.586 Sum_probs=33.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.++||+|||||+|||++|+.|++. |++|+|+|++..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~---G~~V~liD~~~~ 197 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA---GARVILVDEQPE 197 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC---CCcEEEEecCCC
Confidence 358999999999999999999999 999999999764
No 138
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.79 E-value=6.7e-08 Score=108.77 Aligned_cols=191 Identities=16% Similarity=0.055 Sum_probs=105.4
Q ss_pred CCCCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHH
Q psy10285 240 LFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAE 319 (673)
Q Consensus 240 l~~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~ 319 (673)
+....+||+|||+|.+|+.+|..++ . .+|+||||... ..++++....|++.......... ..
T Consensus 5 ~~~~~~DVlVIG~G~AGl~AAl~Aa---~--~~V~lleK~~~-------~~gg~s~~a~Ggi~~~~~~~ds~------e~ 66 (513)
T PRK07512 5 LRILTGRPVIVGGGLAGLMAALKLA---P--RPVVVLSPAPL-------GEGASSAWAQGGIAAALGPDDSP------AL 66 (513)
T ss_pred ccCCcCCEEEECchHHHHHHHHHhC---c--CCEEEEECCCC-------CCCcchHHhhhccccccCCCCCH------HH
Confidence 3345689999999999999999886 4 59999999887 33445555556654333221111 11
Q ss_pred HHHHHHhhccccCCCCCCcceeecCeEEEe-ccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEecc
Q psy10285 320 FLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 398 (673)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~ 398 (673)
++.++.+... +..... -....+...+.++++.++|+++.......... .+ ....... -.+..
T Consensus 67 ~~~d~~~~~~--------------g~~d~~~v~~~~~~s~~~i~wL~~~Gv~f~~~~~G~~~~-~~-~~~~~~~-r~~~~ 129 (513)
T PRK07512 67 HAADTLAAGA--------------GLCDPAVAALITAEAPAAIEDLLRLGVPFDRDADGRLAL-GL-EAAHSRR-RIVHV 129 (513)
T ss_pred HHHHHHHhhC--------------CCCCHHHHHHHHHHHHHHHHHHHHhCCccccCCCCcccc-cc-ccCccCC-cEEEc
Confidence 1222211110 000000 01111222334556667777653211100000 00 0000000 01101
Q ss_pred CCceeeCHHHHHHHHHHHHHHc-CCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEc
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISL-GAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIA 476 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~-Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlA 476 (673)
.+...+..++..|.+.+++. |+++++. .|++|..++ ++|.++.+...++ ...+.|+.||+|
T Consensus 130 --~g~~~G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~--------------g~v~Gv~~~~~~~-~~~i~Ak~VVLA 192 (513)
T PRK07512 130 --GGDGAGAAIMRALIAAVRATPSITVLEGAEARRLLVDD--------------GAVAGVLAATAGG-PVVLPARAVVLA 192 (513)
T ss_pred --CCCCCHHHHHHHHHHHHHhCCCCEEEECcChhheeecC--------------CEEEEEEEEeCCe-EEEEECCEEEEc
Confidence 01123567889999988875 8999964 899987654 6788876654333 347899999999
Q ss_pred CCCCcH
Q psy10285 477 AGAYSG 482 (673)
Q Consensus 477 tG~~s~ 482 (673)
||+++.
T Consensus 193 TGG~~~ 198 (513)
T PRK07512 193 TGGIGG 198 (513)
T ss_pred CCCCcC
Confidence 999864
No 139
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.79 E-value=1.6e-07 Score=106.65 Aligned_cols=62 Identities=19% Similarity=0.198 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEec-CEEEEcCCCCcHH
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITF-AICVIAAGAYSGQ 483 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~a-d~VVlAtG~~s~~ 483 (673)
..++..|.+.+++.|++|+. ++|++|..++ ++|.|+.+.. +|+...+.+ +.||+|||+|...
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~--------------g~V~GV~~~~-~g~~~~i~a~kaVILAtGGf~~n 280 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG--------------GRVTGAVVDH-RGREVTVTARRGVVLAAGGFDHD 280 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecC--------------CEEEEEEEEE-CCcEEEEEcCCEEEEecCCcccc
Confidence 56778888989999999994 6999998653 7899976654 444456777 5799999999764
No 140
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.78 E-value=5.5e-07 Score=98.03 Aligned_cols=68 Identities=25% Similarity=0.302 Sum_probs=51.0
Q ss_pred eCHHHHHHHHHHHHHHcC-CeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 404 FDPWLYLNAVKKKAISLG-AEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~G-v~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
+....+.+.|.+.+.+.+ +....++|++++.+++ ++.|.+.+| .+++||.||.|.|.++.
T Consensus 108 i~~~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~-----------------~~~v~~~~g--~~~~a~~vI~AdG~~S~ 168 (388)
T PRK07494 108 IPNWLLNRALEARVAELPNITRFGDEAESVRPRED-----------------EVTVTLADG--TTLSARLVVGADGRNSP 168 (388)
T ss_pred eEhHHHHHHHHHHHhcCCCcEEECCeeEEEEEcCC-----------------eEEEEECCC--CEEEEeEEEEecCCCch
Confidence 555678888888887764 5533568999987764 566777777 48999999999999874
Q ss_pred HHHHHcCCC
Q psy10285 483 QVARMLKIG 491 (673)
Q Consensus 483 ~l~~~~g~~ 491 (673)
+.+.+++.
T Consensus 169 -vr~~~g~~ 176 (388)
T PRK07494 169 -VREAAGIG 176 (388)
T ss_pred -hHHhcCCC
Confidence 55666643
No 141
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.78 E-value=1.8e-07 Score=105.96 Aligned_cols=194 Identities=19% Similarity=0.169 Sum_probs=105.9
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||+|.+|+.+|+.++ .. .+|+||||... .++++..+.|++.......... ..+++
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa---~~-~~VilveK~~~--------~~g~t~~a~Ggi~~~~~~~ds~------e~~~~ 68 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLA---EH-RRVAVLSKGPL--------SEGSTFYAQGGIAAVLDETDSI------ESHVE 68 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHH---HC-CCEEEEeccCC--------CCCChhhccCCeeeccCCCccH------HHHHH
Confidence 4589999999999999999998 55 79999999887 3455666666664333221111 11222
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccch----HHHHHHHHHHHHHcCCcceeeCHhhH-HhhCCCCCcccceeEEec
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDG----AATLEKNHQLQKELGAKNVLLGPEQL-KAKFPWLNTDDIALACLG 397 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~l~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~g~~~ 397 (673)
++..... + ..+++- .+...+.++++.++|+++........ ....+.........-.+.
T Consensus 69 d~~~~g~--------------~---~~d~~~v~~~~~~~~~~i~~L~~~Gv~f~~~~~~~g~~~~~~~~~gg~~~~r~~~ 131 (536)
T PRK09077 69 DTLIAGA--------------G---LCDEDAVRFIAENAREAVQWLIDQGVPFTTDEQANGEEGYHLTREGGHSHRRILH 131 (536)
T ss_pred HHHHHcc--------------C---CCCHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCccccccccCCCCccCCceEe
Confidence 2211100 0 011111 12223345566677776543211000 000000000000000110
Q ss_pred cCCceeeCHHHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEc-CCCCeeEEecCEEE
Q psy10285 398 LEKEGWFDPWLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD-EKGELKTITFAICV 474 (673)
Q Consensus 398 ~~~~g~i~~~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t-~~G~~~~i~ad~VV 474 (673)
.. ......+...|.+.+++. |+++++ +.|+++..+++ .+ . ..++|.|+.+.. .+|+...+.|+.||
T Consensus 132 -~~--~~~G~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~-----~~-~--~~g~v~Gv~~~~~~~g~~~~i~Ak~VV 200 (536)
T PRK09077 132 -AA--DATGKAVQTTLVERARNHPNITVLERHNAIDLITSDK-----LG-L--PGRRVVGAYVLNRNKERVETIRAKFVV 200 (536)
T ss_pred -cC--CCCHHHHHHHHHHHHHhCCCcEEEeeEEeeeeeeccc-----cc-C--CCCEEEEEEEEECCCCcEEEEecCeEE
Confidence 10 112356778888888765 899995 58899876430 00 0 005788977654 45655679999999
Q ss_pred EcCCCCcH
Q psy10285 475 IAAGAYSG 482 (673)
Q Consensus 475 lAtG~~s~ 482 (673)
+|||+++.
T Consensus 201 lATGG~~~ 208 (536)
T PRK09077 201 LATGGASK 208 (536)
T ss_pred ECCCCCCC
Confidence 99999875
No 142
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.77 E-value=1.2e-07 Score=107.98 Aligned_cols=187 Identities=19% Similarity=0.158 Sum_probs=106.6
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHHH
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRN 323 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~~ 323 (673)
.+||+|||+|.+|+.+|+.++++ ..+.+|+|+||... ..+++..+.|++..........+ .++.+
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~-g~g~~V~lveK~~~--------~~~~s~~a~Gg~~~~~~~~ds~e------~~~~d 67 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEA-NPHLDVALISKVYP--------MRSHTVAAEGGSAAVTGDDDSLD------EHFHD 67 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHh-CCCCcEEEEEccCC--------CCCCchhcCCchhhhcCCCCCHH------HHHHH
Confidence 47999999999999999999821 23689999999887 33444455555543222111111 12222
Q ss_pred HHhhccccCCCCCCcceeecCeEEEeccc----hHHHHHHHHHHHHHcCCcceeeCHhhH-HhhCCCCCcccceeEEecc
Q psy10285 324 IKHHCHVIGEDEPDVNFTPNGYLFCASQD----GAATLEKNHQLQKELGAKNVLLGPEQL-KAKFPWLNTDDIALACLGL 398 (673)
Q Consensus 324 l~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~g~~~~ 398 (673)
+.+. |.. +.+++ -.+.-.+.++++.++|+++.......+ ...+.... .. -.+..
T Consensus 68 t~~~----------------g~~-~~d~~lv~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~---~~-R~~~~ 126 (580)
T TIGR01176 68 TVSG----------------GDW-LCEQDVVEYFVAEAPKEMVQLEHWGCPWSRKPDGRVNVRRFGGMK---KE-RTWFA 126 (580)
T ss_pred HHHh----------------cCC-cCcHHHHHHHHHHhHHHHHHHHHcCCccEecCCCceeeeccCCcc---CC-eeeec
Confidence 2110 000 01111 112223344556677876654221111 00011000 00 11111
Q ss_pred CCceeeCHHHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEEecCEEEE
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTITFAICVI 475 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i~ad~VVl 475 (673)
. . -....++..|.+.+.+. |+++++ +.|++|..++ ++|.|+.+. ..+|+...+.|+.||+
T Consensus 127 ~-~--~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--------------g~v~Gv~~~~~~~g~~~~i~AkaVIL 189 (580)
T TIGR01176 127 A-D--KTGFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD--------------GRVCGLVAIEMAEGRLVTILADAVVL 189 (580)
T ss_pred C-C--CCHHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC--------------CEEEEEEEEEcCCCcEEEEecCEEEE
Confidence 1 1 12467888898888764 899885 5999998765 688887654 3577666899999999
Q ss_pred cCCCCcHH
Q psy10285 476 AAGAYSGQ 483 (673)
Q Consensus 476 AtG~~s~~ 483 (673)
|||+++..
T Consensus 190 ATGG~~~~ 197 (580)
T TIGR01176 190 ATGGAGRV 197 (580)
T ss_pred cCCCCccc
Confidence 99998863
No 143
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=98.76 E-value=9.2e-07 Score=97.84 Aligned_cols=35 Identities=17% Similarity=0.224 Sum_probs=32.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+++|||+|.+|+++|..|+ +.|.+|+++++.+.
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~---~~g~~Vtli~~~~~ 182 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLY---ERGLHPTLIHRSDK 182 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHH---hCCCcEEEEecccc
Confidence 468999999999999999999 88999999998765
No 144
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.76 E-value=1.6e-07 Score=106.82 Aligned_cols=61 Identities=15% Similarity=0.183 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecC-EEEEcCCCCcH
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFA-ICVIAAGAYSG 482 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad-~VVlAtG~~s~ 482 (673)
..++..|.+.+++.|++++. ++|++|..++ ++|.++.+.. +|+...+.|+ .||+|||++..
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~--------------g~v~Gv~~~~-~g~~~~i~A~~aVIlAtGG~~~ 270 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVED--------------GRVVGVVVVR-DGREVLIRARRGVLLASGGFGH 270 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC--------------CEEEEEEEEE-CCeEEEEEecceEEEecCCccC
Confidence 56778888999999999995 5999998765 7899977754 5555678895 79999999876
No 145
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.75 E-value=2.2e-07 Score=104.69 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecC-EEEEcCCCCcH
Q psy10285 407 WLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFA-ICVIAAGAYSG 482 (673)
Q Consensus 407 ~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad-~VVlAtG~~s~ 482 (673)
..++..|.+.+.+. |++|+. ++|++|..++ ++|.++.+.. +|+...++|+ .||+|||++..
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~--------------g~v~Gv~~~~-~g~~~~i~A~k~VIlAtGG~~~ 236 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVED--------------GRVVGAVVER-GGERRRVRARRGVLLAAGGFEQ 236 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecC--------------CEEEEEEEEE-CCcEEEEEeCceEEEeCCCccC
Confidence 45777777777664 999984 6999998764 7899977654 4655689996 79999999843
No 146
>PRK10015 oxidoreductase; Provisional
Probab=98.75 E-value=1e-06 Score=97.06 Aligned_cols=67 Identities=18% Similarity=0.217 Sum_probs=48.6
Q ss_pred eCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 404 FDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
+.-..+-..|.+.+++.|++++. ++|+++..++ +++.+ +.+.+ .+++||.||+|+|..+
T Consensus 105 v~R~~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~--------------~~v~~--v~~~~---~~i~A~~VI~AdG~~s- 164 (429)
T PRK10015 105 VLRNRLDPWLMEQAEQAGAQFIPGVRVDALVREG--------------NKVTG--VQAGD---DILEANVVILADGVNS- 164 (429)
T ss_pred eehhHHHHHHHHHHHHcCCEEECCcEEEEEEEeC--------------CEEEE--EEeCC---eEEECCEEEEccCcch-
Confidence 44567777888999999999995 5899988765 33433 44433 3799999999999864
Q ss_pred HHHHHcCC
Q psy10285 483 QVARMLKI 490 (673)
Q Consensus 483 ~l~~~~g~ 490 (673)
.+.+.+++
T Consensus 165 ~v~~~lg~ 172 (429)
T PRK10015 165 MLGRSLGM 172 (429)
T ss_pred hhhcccCC
Confidence 45565654
No 147
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.75 E-value=1.3e-07 Score=108.27 Aligned_cols=191 Identities=15% Similarity=0.130 Sum_probs=100.4
Q ss_pred EEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHHHHHh
Q psy10285 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKH 326 (673)
Q Consensus 247 v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~~ 326 (673)
|+|||+|.+|+.+|..++ +.|.+|+|+||... ...+++....|++........... ....++.++.+
T Consensus 1 VlVVG~G~AGl~AAl~Aa---e~G~~VilleK~~~-------~~~g~s~~a~Ggi~a~~~~~~~~d---s~e~~~~d~~~ 67 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLA---ELGYHVKLFSYVDA-------PRRAHSIAAQGGINGAVNTKGDGD---SPWRHFDDTVK 67 (603)
T ss_pred CEEECccHHHHHHHHHHH---HcCCCEEEEEecCC-------CCCccchhhhhhhhhhcccCCCCC---CHHHHHHHHHH
Confidence 689999999999999999 78999999999883 133344444444432211100000 00112222211
Q ss_pred hccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhH-HhhCCCCCcccceeEEeccCCceeeC
Q psy10285 327 HCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQL-KAKFPWLNTDDIALACLGLEKEGWFD 405 (673)
Q Consensus 327 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~-~~~~p~~~~~~~~~g~~~~~~~g~i~ 405 (673)
... +.....+ -..-.+.....++++.+.|+++.......+ ...++... .....+ . .. -.
T Consensus 68 ~g~----------~~~d~~l---v~~l~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~---~~R~~~-~-~~--~t 127 (603)
T TIGR01811 68 GGD----------FRARESP---VKRLAVASPEIIDLMDAMGVPFAREYGGLLDTRSFGGVQ---VSRTAY-A-RG--QT 127 (603)
T ss_pred hcC----------CCCCHHH---HHHHHHHHHHHHHHHHHcCCEEEecCCCccccccccCcc---cCccee-c-CC--CC
Confidence 110 0000000 001111223345566677876543211000 00011000 000111 1 00 12
Q ss_pred HHHHHHHHHHHHHH----cCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcC-CCCeeEEecCEEEEcCCC
Q psy10285 406 PWLYLNAVKKKAIS----LGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE-KGELKTITFAICVIAAGA 479 (673)
Q Consensus 406 ~~~~~~~l~~~~~~----~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~-~G~~~~i~ad~VVlAtG~ 479 (673)
...++..|.+.+++ .|++++. +.|++|..+++ ++|.|+.+... +|+...+.|+.||+|||+
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~-------------grV~GV~~~~~~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG-------------NRARGIIARNLVTGEIETHSADAVILATGG 194 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC-------------CEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 34566666665544 3899985 59999987654 68999777653 565567999999999999
Q ss_pred CcHH
Q psy10285 480 YSGQ 483 (673)
Q Consensus 480 ~s~~ 483 (673)
++..
T Consensus 195 ~g~~ 198 (603)
T TIGR01811 195 YGNV 198 (603)
T ss_pred CcCc
Confidence 8643
No 148
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.75 E-value=1.6e-07 Score=107.25 Aligned_cols=188 Identities=16% Similarity=0.166 Sum_probs=105.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||+|.+|+.+|+.+++ ...+.+|+|+||... ..+++....|++..........+ .++.
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~-~g~g~~V~lleK~~~--------~~g~s~~a~Gg~~~~~~~~ds~e------~~~~ 67 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAE-ANPNLKIALISKVYP--------MRSHTVAAEGGSAAVAQDHDSFD------YHFH 67 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHH-hCCCCcEEEEEccCC--------CCCChhhccchhhhhcCCCCCHH------HHHH
Confidence 35799999999999999999982 122579999999877 33455555555443221111111 1122
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccch----HHHHHHHHHHHHHcCCcceeeCHhhHH-hhCCCCCcccceeEEec
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDG----AATLEKNHQLQKELGAKNVLLGPEQLK-AKFPWLNTDDIALACLG 397 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~l~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~g~~~ 397 (673)
+.... |.. +.+++- .+.-...++++.++|+++.......+. ..+.... .. -.+.
T Consensus 68 d~~~~----------------g~~-~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~~~~~gg~~---~~-r~~~ 126 (582)
T PRK09231 68 DTVAG----------------GDW-LCEQDVVEYFVHHCPTEMTQLEQWGCPWSRKPDGSVNVRRFGGMK---IE-RTWF 126 (582)
T ss_pred HHHHh----------------ccc-CCCHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCceeeecccccc---CC-eeEe
Confidence 22110 000 011111 122234455667778765432111110 0011000 00 0111
Q ss_pred cCCceeeCHHHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEEecCEEE
Q psy10285 398 LEKEGWFDPWLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTITFAICV 474 (673)
Q Consensus 398 ~~~~g~i~~~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i~ad~VV 474 (673)
... -....++..|.+.+.+. |++++. +.|++|..++ ++|.|+.+. ..+|+...+.|+.||
T Consensus 127 ~~~---~~G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~--------------g~v~Gv~~~~~~~g~~~~i~AkaVI 189 (582)
T PRK09231 127 AAD---KTGFHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD--------------GHVRGLVAMNMMEGTLVQIRANAVV 189 (582)
T ss_pred cCC---CcHHHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC--------------CEEEEEEEEEcCCCcEEEEECCEEE
Confidence 111 12356778888877765 799884 5999998765 678887654 456766689999999
Q ss_pred EcCCCCcHH
Q psy10285 475 IAAGAYSGQ 483 (673)
Q Consensus 475 lAtG~~s~~ 483 (673)
+|||+++..
T Consensus 190 lATGG~~~l 198 (582)
T PRK09231 190 MATGGAGRV 198 (582)
T ss_pred ECCCCCcCC
Confidence 999998753
No 149
>PRK08275 putative oxidoreductase; Provisional
Probab=98.74 E-value=1.7e-07 Score=106.63 Aligned_cols=186 Identities=15% Similarity=0.138 Sum_probs=102.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccC--CCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLD--GCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEF 320 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~--g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~ 320 (673)
..+||+|||+|.+|+.+|+.++ .. |.+|+||||... ..++++....+++....... ... ...+
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa---~~g~g~~VilveK~~~-------~~~g~~~~~~~g~~~~~~~~-~d~----~~~~ 72 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAK---ERNPALRVLLLEKANV-------KRSGAISMGMDGLNNAVIPG-HAT----PEQY 72 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHH---HhCCCCeEEEEeCCCC-------CCCCchhhhhhhHhhhhccC-CCC----HHHH
Confidence 4589999999999999999998 44 789999999887 22222211222222111000 000 0112
Q ss_pred HHHHHhhccccCCCCCCcceeecCeEEEeccchH----HHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEe
Q psy10285 321 LRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGA----ATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACL 396 (673)
Q Consensus 321 ~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~ 396 (673)
+..+..... + ..+++-. +.....++++.+.|+++......... .. .. ...+.+
T Consensus 73 ~~d~~~~~~--------------~---~~d~~~v~~~~~~s~~~i~~L~~~Gv~f~~~~~g~~~--~~--~~--~~~~~~ 129 (554)
T PRK08275 73 TKEITIAND--------------G---IVDQKAVYAYAEHSFETIQQLDRWGVKFEKDETGDYA--VK--KV--HHMGSY 129 (554)
T ss_pred HHHHHHhcC--------------C---CccHHHHHHHHHhhHHHHHHHHHCCCeeEeCCCCCEe--ee--cc--cccCcc
Confidence 222211100 0 0111111 11233455666777765432110000 00 00 000000
Q ss_pred ccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEEecCEEE
Q psy10285 397 GLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTITFAICV 474 (673)
Q Consensus 397 ~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i~ad~VV 474 (673)
..+ .-....++..|.+.+++.|+++++ +.|++|..+++ ++|.|+.+. +.+|+...+.|+.||
T Consensus 130 ~~~---~~~G~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~-------------g~v~Gv~~~~~~~g~~~~i~Ak~VI 193 (554)
T PRK08275 130 VLP---MPEGHDIKKVLYRQLKRARVLITNRIMATRLLTDAD-------------GRVAGALGFDCRTGEFLVIRAKAVI 193 (554)
T ss_pred ccc---CCChHHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC-------------CeEEEEEEEecCCCcEEEEECCEEE
Confidence 001 012356788899999999999995 59999988643 678887654 456755678999999
Q ss_pred EcCCCCcH
Q psy10285 475 IAAGAYSG 482 (673)
Q Consensus 475 lAtG~~s~ 482 (673)
+|||+++.
T Consensus 194 lATGG~~~ 201 (554)
T PRK08275 194 LCCGAAGR 201 (554)
T ss_pred ECCCCccc
Confidence 99999875
No 150
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.74 E-value=2.9e-08 Score=103.78 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
|||+|||||++|+++|..|++. |++|+|||+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~---g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA---NLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC---CCCEEEEeccC
Confidence 6999999999999999999999 99999999875
No 151
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=98.73 E-value=6.8e-08 Score=103.12 Aligned_cols=60 Identities=22% Similarity=0.170 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHHHH
Q psy10285 407 WLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQVA 485 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~l~ 485 (673)
.++.....+.++++||++. ++.|++++.+. |.+.+|+. +|.++.||+|+|..++.++
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~~---------------------v~~~~g~~-~I~~~tvvWaaGv~a~~~~ 266 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTPDG---------------------VTLKDGEE-EIPADTVVWAAGVRASPLL 266 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECCCc---------------------EEEccCCe-eEecCEEEEcCCCcCChhh
Confidence 4555667778899999999 56999998765 77777742 5999999999999999988
Q ss_pred HHc
Q psy10285 486 RML 488 (673)
Q Consensus 486 ~~~ 488 (673)
+.+
T Consensus 267 ~~l 269 (405)
T COG1252 267 KDL 269 (405)
T ss_pred hhc
Confidence 753
No 152
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.73 E-value=2.7e-07 Score=102.76 Aligned_cols=173 Identities=16% Similarity=0.220 Sum_probs=98.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHHHH
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNI 324 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l 324 (673)
+||+|||+|.+|+.+|..++ +.|.+|+|+||... .+++....|++..........+ . ++.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aa---e~G~~V~liek~~~---------~~~s~~a~ggi~~~~~~~ds~e--~----~~~d~ 63 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLA---KKGFDVTIIGPGIK---------KSNSYLAQAGIAFPILEGDSIR--A----HVLDT 63 (466)
T ss_pred CeEEEECccHHHHHHHHHHH---HCCCeEEEEeCCCC---------CCCcHHHcCCcccccCCCCcHH--H----HHHHH
Confidence 68999999999999999999 78999999999865 2233334444432221111110 1 11111
Q ss_pred HhhccccCCCCCCcceeecCeEEEeccch----HHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCC
Q psy10285 325 KHHCHVIGEDEPDVNFTPNGYLFCASQDG----AATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEK 400 (673)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~ 400 (673)
..... + ..+++. .+...+.++++.+.|+++.... ..... .+. ..+...
T Consensus 64 ~~~~~----------~-------~~d~~~v~~~~~~~~~~i~~L~~~Gv~f~~~~------~~~g~---~~~-r~~~~~- 115 (466)
T PRK08401 64 IRAGK----------Y-------INDEEVVWNVISKSSEAYDFLTSLGLEFEGNE------LEGGH---SFP-RVFTIK- 115 (466)
T ss_pred HHHhc----------C-------CCCHHHHHHHHHHHHHHHHHHHHcCCCcccCC------CcCCc---cCC-eEEECC-
Confidence 11000 0 001111 1122334456667776643210 00000 000 111111
Q ss_pred ceeeCHHHHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 401 EGWFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 401 ~g~i~~~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
......++..|.+.+++.|++++++.|+.+..++ ++|.++. + +| ..++++.||+|||++
T Consensus 116 --~~~G~~i~~~L~~~~~~~gv~i~~~~v~~l~~~~--------------g~v~Gv~--~-~g--~~i~a~~VVLATGG~ 174 (466)
T PRK08401 116 --NETGKHIIKILYKHARELGVNFIRGFAEELAIKN--------------GKAYGVF--L-DG--ELLKFDATVIATGGF 174 (466)
T ss_pred --CCchHHHHHHHHHHHHhcCCEEEEeEeEEEEeeC--------------CEEEEEE--E-CC--EEEEeCeEEECCCcC
Confidence 1123578899999999999999877888887654 5666743 3 34 378999999999999
Q ss_pred cHHH
Q psy10285 481 SGQV 484 (673)
Q Consensus 481 s~~l 484 (673)
+...
T Consensus 175 ~~~~ 178 (466)
T PRK08401 175 SGLF 178 (466)
T ss_pred cCCC
Confidence 8754
No 153
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.72 E-value=3.3e-07 Score=104.69 Aligned_cols=65 Identities=14% Similarity=0.115 Sum_probs=51.3
Q ss_pred eCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEec-CEEEEcCCCCc
Q psy10285 404 FDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITF-AICVIAAGAYS 481 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~a-d~VVlAtG~~s 481 (673)
.++..++..|.+.+++.|++++. ++|++|..++ ++|.++.+.. +|+...+.| +.||+|||++.
T Consensus 218 ~~G~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~--------------g~V~GV~~~~-~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 218 VMGNALIGRLLYSLRARGVRILTQTDVESLETDH--------------GRVIGATVVQ-GGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred cccHHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC--------------CEEEEEEEec-CCeEEEEEccceEEECCCCcc
Confidence 45678899999999999999995 5999988754 6888876653 454456886 68999999987
Q ss_pred HH
Q psy10285 482 GQ 483 (673)
Q Consensus 482 ~~ 483 (673)
..
T Consensus 283 ~n 284 (578)
T PRK12843 283 RH 284 (578)
T ss_pred cC
Confidence 74
No 154
>PRK06126 hypothetical protein; Provisional
Probab=98.71 E-value=1.5e-06 Score=98.96 Aligned_cols=72 Identities=26% Similarity=0.255 Sum_probs=49.8
Q ss_pred eCHHHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEc-CCCCeeEEecCEEEEcCCCC
Q psy10285 404 FDPWLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD-EKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t-~~G~~~~i~ad~VVlAtG~~ 480 (673)
+.-..+...|.+.+++. |++++. ++|++++.+++ .|+ +.+.. .+|+..++++|.||.|.|.+
T Consensus 123 i~q~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--------------~v~-v~~~~~~~g~~~~i~ad~vVgADG~~ 187 (545)
T PRK06126 123 IPQKYLEPILLEHAAAQPGVTLRYGHRLTDFEQDAD--------------GVT-ATVEDLDGGESLTIRADYLVGCDGAR 187 (545)
T ss_pred CCHHHHHHHHHHHHHhCCCceEEeccEEEEEEECCC--------------eEE-EEEEECCCCcEEEEEEEEEEecCCcc
Confidence 33345666777777764 899985 59999988764 232 22332 45654689999999999998
Q ss_pred cHHHHHHcCCC
Q psy10285 481 SGQVARMLKIG 491 (673)
Q Consensus 481 s~~l~~~~g~~ 491 (673)
+. +-+.+++.
T Consensus 188 S~-VR~~lgi~ 197 (545)
T PRK06126 188 SA-VRRSLGIS 197 (545)
T ss_pred hH-HHHhcCCc
Confidence 85 66667653
No 155
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.71 E-value=3.5e-08 Score=97.07 Aligned_cols=36 Identities=28% Similarity=0.473 Sum_probs=30.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+++|+|||+|.+|..+|..|+ +.+.+|+++-|++.
T Consensus 166 ~~k~V~VVG~G~SA~d~a~~l~---~~g~~V~~~~R~~~ 201 (203)
T PF13738_consen 166 KGKRVVVVGGGNSAVDIAYALA---KAGKSVTLVTRSPI 201 (203)
T ss_dssp TTSEEEEE--SHHHHHHHHHHT---TTCSEEEEEESS--
T ss_pred CCCcEEEEcChHHHHHHHHHHH---hhCCEEEEEecCCC
Confidence 5689999999999999999999 88999999999875
No 156
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.70 E-value=3.5e-07 Score=97.71 Aligned_cols=72 Identities=28% Similarity=0.225 Sum_probs=49.9
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
.++-..+.+.|.+.+++.|+++.. ++|+.++.+.+ .+........+|+..+++||.||-|.|.+|
T Consensus 107 ~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~--------------~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 107 VIDRPELDRALREEAEERGVDIRFGTRVVSIEQDDD--------------GVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp EEEHHHHHHHHHHHHHHHTEEEEESEEEEEEEEETT--------------EEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred hhhHHHHHHhhhhhhhhhhhhheeeeeccccccccc--------------ccccccccccCCceeEEEEeeeecccCccc
Confidence 355677888999999999999985 48999988774 222222223356556899999999999987
Q ss_pred HHHHHHcC
Q psy10285 482 GQVARMLK 489 (673)
Q Consensus 482 ~~l~~~~g 489 (673)
. +.+.++
T Consensus 173 ~-vR~~l~ 179 (356)
T PF01494_consen 173 K-VRKQLG 179 (356)
T ss_dssp H-HHHHTT
T ss_pred c-hhhhcc
Confidence 4 445554
No 157
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.70 E-value=3.8e-06 Score=92.87 Aligned_cols=40 Identities=23% Similarity=0.444 Sum_probs=35.5
Q ss_pred CCCCCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 239 TLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 239 ~l~~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+....+||+|||||++|+.+|..|+ +.|.+|+++||...
T Consensus 34 ~~~~~~~DViIVGaGPAG~~aA~~LA---~~G~~VlllEr~~~ 73 (450)
T PLN00093 34 KLSGRKLRVAVIGGGPAGACAAETLA---KGGIETFLIERKLD 73 (450)
T ss_pred CcCCCCCeEEEECCCHHHHHHHHHHH---hCCCcEEEEecCCC
Confidence 34557799999999999999999999 89999999999754
No 158
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.70 E-value=2.7e-07 Score=88.24 Aligned_cols=143 Identities=23% Similarity=0.326 Sum_probs=93.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
...||+|||+|++|+.+|++|+ +.|.||+++||.-. .++|. | .+|.+.+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLA---k~g~kV~i~E~~ls-------~GGG~-w-~GGmlf~------------------- 77 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLA---KAGLKVAIFERKLS-------FGGGI-W-GGGMLFN------------------- 77 (262)
T ss_pred hhccEEEECcCcchHHHHHHHH---hCCceEEEEEeecc-------cCCcc-c-ccccccc-------------------
Confidence 4578999999999999999999 88999999999877 23222 1 1111110
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCce
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEG 402 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g 402 (673)
.+.+..+ . ...+++.+++++.. ..+.+
T Consensus 78 ----------------------~iVv~~~--a------~~iL~e~gI~ye~~-----------------e~g~~------ 104 (262)
T COG1635 78 ----------------------KIVVREE--A------DEILDEFGIRYEEE-----------------EDGYY------ 104 (262)
T ss_pred ----------------------eeeecch--H------HHHHHHhCCcceec-----------------CCceE------
Confidence 0111101 1 11223444432221 11222
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEE----cCCCC---eeEEecCEEE
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR----DEKGE---LKTITFAICV 474 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~----t~~G~---~~~i~ad~VV 474 (673)
..|+..++..|...+.+.|++|++. .|+++...++ .+|.|+.+. +..+- ...++|+.||
T Consensus 105 v~ds~e~~skl~~~a~~aGaki~n~~~veDvi~r~~-------------~rVaGvVvNWt~V~~~~lhvDPl~i~a~~Vv 171 (262)
T COG1635 105 VADSAEFASKLAARALDAGAKIFNGVSVEDVIVRDD-------------PRVAGVVVNWTPVQMAGLHVDPLTIRAKAVV 171 (262)
T ss_pred EecHHHHHHHHHHHHHhcCceeeecceEEEEEEecC-------------CceEEEEEecchhhhcccccCcceeeEEEEE
Confidence 4678899999999999999999986 9999988773 378885543 11221 1379999999
Q ss_pred EcCCCCcH
Q psy10285 475 IAAGAYSG 482 (673)
Q Consensus 475 lAtG~~s~ 482 (673)
.|||--+.
T Consensus 172 DaTGHda~ 179 (262)
T COG1635 172 DATGHDAE 179 (262)
T ss_pred eCCCCchH
Confidence 99996544
No 159
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=98.70 E-value=5.6e-07 Score=100.45 Aligned_cols=36 Identities=25% Similarity=0.401 Sum_probs=32.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..++|+|||||++|+++|+.|++. |++|+|+|+...
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~---G~~V~vie~~~~ 177 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA---GHKVTVFERADR 177 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC---CCcEEEEecCCC
Confidence 347999999999999999999999 999999998753
No 160
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=98.70 E-value=1.3e-06 Score=103.26 Aligned_cols=36 Identities=22% Similarity=0.242 Sum_probs=32.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..++++|||+|.+|+++|..|+ ..|.+|+|+++.+.
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~---~~G~~VtvVe~~~~ 179 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALK---NLGVETHVIEFAPM 179 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHH---HcCCeEEEEecccc
Confidence 3467999999999999999999 88999999998665
No 161
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.69 E-value=1.5e-06 Score=94.79 Aligned_cols=65 Identities=20% Similarity=0.130 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHHH
Q psy10285 407 WLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQV 484 (673)
Q Consensus 407 ~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~l 484 (673)
..+.+.|.+.+.+. |++++. ++|+++..+++ ++.|++.+| .++.+|.||.|.|.++. +
T Consensus 112 ~~l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~~-----------------~~~v~~~~g--~~~~a~~vI~AdG~~S~-v 171 (395)
T PRK05732 112 HDVGQRLFALLDKAPGVTLHCPARVANVERTQG-----------------SVRVTLDDG--ETLTGRLLVAADGSHSA-L 171 (395)
T ss_pred HHHHHHHHHHHhcCCCcEEEcCCEEEEEEEcCC-----------------eEEEEECCC--CEEEeCEEEEecCCChh-h
Confidence 45566777777664 799984 59999987664 566777777 47999999999999875 6
Q ss_pred HHHcCCC
Q psy10285 485 ARMLKIG 491 (673)
Q Consensus 485 ~~~~g~~ 491 (673)
.+.+++.
T Consensus 172 r~~~~~~ 178 (395)
T PRK05732 172 REALGID 178 (395)
T ss_pred HHhhCCC
Confidence 6666643
No 162
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=98.69 E-value=9.9e-07 Score=104.21 Aligned_cols=36 Identities=25% Similarity=0.321 Sum_probs=32.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..++++|||+|.+|+++|..|+ ..|.+|+|+++.+.
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~---~~G~~Vtvv~~~~~ 174 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQ---NLGMDVSVIHHAPG 174 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHH---hcCCeEEEEccCCc
Confidence 3468999999999999999999 88999999997665
No 163
>PLN02985 squalene monooxygenase
Probab=98.69 E-value=7.1e-06 Score=92.23 Aligned_cols=72 Identities=22% Similarity=0.383 Sum_probs=53.9
Q ss_pred eeCHHHHHHHHHHHHHHc-CCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 403 WFDPWLYLNAVKKKAISL-GAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~-Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
.++...+.+.|.+.+.+. |++++.++|+++..++ +.+.++.+.+.+|+..++.||.||.|.|.+|
T Consensus 143 ~i~r~~l~~~L~~~a~~~~~V~i~~gtvv~li~~~--------------~~v~gV~~~~~dG~~~~~~AdLVVgADG~~S 208 (514)
T PLN02985 143 SFHNGRFVQRLRQKASSLPNVRLEEGTVKSLIEEK--------------GVIKGVTYKNSAGEETTALAPLTVVCDGCYS 208 (514)
T ss_pred eeecHHHHHHHHHHHHhCCCeEEEeeeEEEEEEcC--------------CEEEEEEEEcCCCCEEEEECCEEEECCCCch
Confidence 455678889999988776 7888877888887655 4566777776778656788999999999987
Q ss_pred HHHHHHcC
Q psy10285 482 GQVARMLK 489 (673)
Q Consensus 482 ~~l~~~~g 489 (673)
. +-+.++
T Consensus 209 ~-vR~~l~ 215 (514)
T PLN02985 209 N-LRRSLN 215 (514)
T ss_pred H-HHHHhc
Confidence 5 334444
No 164
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.68 E-value=1.7e-06 Score=95.01 Aligned_cols=36 Identities=31% Similarity=0.577 Sum_probs=33.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+||+|||||++|+.+|..|+ +.|.+|+|+||.+.
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~---~~G~~v~v~E~~~~ 52 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALK---DSGLRIALIEAQPA 52 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHh---cCCCEEEEEecCCc
Confidence 4689999999999999999999 89999999999876
No 165
>KOG1298|consensus
Probab=98.67 E-value=3.7e-08 Score=100.97 Aligned_cols=70 Identities=21% Similarity=0.307 Sum_probs=58.4
Q ss_pred ceeeCHHHHHHHHHHHHHHc-CCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCC
Q psy10285 401 EGWFDPWLYLNAVKKKAISL-GAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479 (673)
Q Consensus 401 ~g~i~~~~~~~~l~~~~~~~-Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~ 479 (673)
+-.++..++++.|.+++... +|++.++.|.++.+++ +.|.|+++.+..|++.+..|-.-|+|-|-
T Consensus 141 GrsFhnGRFvq~lR~ka~slpNV~~eeGtV~sLlee~--------------gvvkGV~yk~k~gee~~~~ApLTvVCDGc 206 (509)
T KOG1298|consen 141 GRSFHNGRFVQRLRKKAASLPNVRLEEGTVKSLLEEE--------------GVVKGVTYKNKEGEEVEAFAPLTVVCDGC 206 (509)
T ss_pred cceeeccHHHHHHHHHHhcCCCeEEeeeeHHHHHhcc--------------CeEEeEEEecCCCceEEEecceEEEecch
Confidence 44566678999999887654 9999999999998887 68899888888887788888999999999
Q ss_pred CcHHH
Q psy10285 480 YSGQV 484 (673)
Q Consensus 480 ~s~~l 484 (673)
+++.-
T Consensus 207 fSnlR 211 (509)
T KOG1298|consen 207 FSNLR 211 (509)
T ss_pred hHHHH
Confidence 98643
No 166
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=98.67 E-value=7.4e-07 Score=98.17 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=30.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+..+|||||||.+|+.+|..|... +.+|+|||++..
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~---~~~ItlI~~~~~ 44 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPK---KYNITVISPRNH 44 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcC---CCeEEEEcCCCC
Confidence 346999999999999999998765 789999998763
No 167
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.67 E-value=7.7e-08 Score=106.43 Aligned_cols=36 Identities=28% Similarity=0.454 Sum_probs=33.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...+|+|||||++||++|.+|++. |++|+|+|+...
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~~~---G~~v~vfE~~~~ 44 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELRRE---GHTVVVFEREKQ 44 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHHhc---CCeEEEEecCCC
Confidence 347999999999999999999999 999999999765
No 168
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.66 E-value=1.8e-07 Score=90.20 Aligned_cols=142 Identities=24% Similarity=0.329 Sum_probs=84.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||+|++|+.+|+.|+ +.|.||.++|+... .+++. + .+|.+
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La---~~g~kV~v~E~~~~-------~GGg~-~-~Gg~l--------------------- 62 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLA---KAGLKVAVIERKLS-------PGGGM-W-GGGML--------------------- 62 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHH---HHTS-EEEEESSSS--------BTTT-T-S-CTT---------------------
T ss_pred ccCCEEEECCChhHHHHHHHHH---HCCCeEEEEecCCC-------CCccc-c-ccccc---------------------
Confidence 4689999999999999999999 78999999999876 22221 1 01110
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCce
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEG 402 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g 402 (673)
|. .+.+..+. . ..+.+++++++.. ..+.+
T Consensus 63 -----------------f~---~iVVq~~a-~-------~iL~elgi~y~~~-----------------~~g~~------ 91 (230)
T PF01946_consen 63 -----------------FN---KIVVQEEA-D-------EILDELGIPYEEY-----------------GDGYY------ 91 (230)
T ss_dssp -----------------------EEEETTT-H-------HHHHHHT---EE------------------SSEEE------
T ss_pred -----------------cc---hhhhhhhH-H-------HHHHhCCceeEEe-----------------CCeEE------
Confidence 00 01111111 0 1122344432211 11333
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEc----CCC---CeeEEecCEEE
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD----EKG---ELKTITFAICV 474 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t----~~G---~~~~i~ad~VV 474 (673)
..|+..++..|...+.+.|++|++. .|+++...++ ++|.|+.+.- ..| ....++|+.||
T Consensus 92 v~d~~~~~s~L~s~a~~aGakifn~~~vEDvi~r~~-------------~rV~GvViNWt~V~~~glHvDPl~i~ak~Vi 158 (230)
T PF01946_consen 92 VADSVEFTSTLASKAIDAGAKIFNLTSVEDVIVRED-------------DRVAGVVINWTPVEMAGLHVDPLTIRAKVVI 158 (230)
T ss_dssp ES-HHHHHHHHHHHHHTTTEEEEETEEEEEEEEECS-------------CEEEEEEEEEHHHHTT--T-B-EEEEESEEE
T ss_pred EEcHHHHHHHHHHHHhcCCCEEEeeeeeeeeEEEcC-------------CeEEEEEEEehHHhHhhcCCCcceEEEeEEE
Confidence 4688899999999999999999986 8999887764 6898965531 122 12489999999
Q ss_pred EcCCCCc
Q psy10285 475 IAAGAYS 481 (673)
Q Consensus 475 lAtG~~s 481 (673)
-|||--+
T Consensus 159 DaTGHda 165 (230)
T PF01946_consen 159 DATGHDA 165 (230)
T ss_dssp E---SSS
T ss_pred eCCCCch
Confidence 9999543
No 169
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.65 E-value=4.6e-07 Score=103.05 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=32.9
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 280 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~ 280 (673)
..+||+|||+|.+|+.+|..++ +.|.+|+||||.+
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa---~~G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELA---DAGKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHH---HCCCeEEEEeCCC
Confidence 4589999999999999999999 8899999999988
No 170
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.63 E-value=3.2e-07 Score=101.43 Aligned_cols=181 Identities=17% Similarity=0.144 Sum_probs=97.0
Q ss_pred EECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcc-hhhHHHHHHHHHHHHHHhh
Q psy10285 249 IIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLR-ENIEMSLFGAEFLRNIKHH 327 (673)
Q Consensus 249 iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~-~~~~~~~~~~~~~~~l~~~ 327 (673)
|||+|.+|+.+|+.++ +.|.+|+||||.+.. ..++++.. .+.+....... ..........++++++.+.
T Consensus 1 VVG~G~AGl~AA~~Aa---~~Ga~V~vlEK~~~~------~~Gg~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (432)
T TIGR02485 1 VIGGGLAGLCAAIEAR---RAGASVLLLEAAPRA------RRGGNARH-GRNIRVAHDIPTDFQRDSYPAEEFERDLAPV 70 (432)
T ss_pred CCcccHHHHHHHHHHH---hCCCcEEEEeCCCCC------cCCcCccc-ccchhhcccchhhhhhhhccHHHHHHHHHHh
Confidence 7999999999999999 889999999998751 01122221 12211111110 0000001112344444322
Q ss_pred ccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCceeeCHH
Q psy10285 328 CHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPW 407 (673)
Q Consensus 328 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g~i~~~ 407 (673)
... ..+..+ -....+...+.++++.++|++++..... ..|... ...+ ... ...
T Consensus 71 ~~~----~~d~~l---------~~~~~~~s~~~i~wl~~~Gv~f~~~~~g----~~~~~~-----~~~~-~~~----~g~ 123 (432)
T TIGR02485 71 TGG----RTNESL---------SRLGIGRGSRDLRWAFAHGVHLQPPAAG----NLPYSR-----RTAF-LRG----GGK 123 (432)
T ss_pred hCC----CCCHHH---------HHHHHhcchhHHHHHHhCCceeeecCCC----CccccC-----ceee-ecC----CHH
Confidence 110 000000 0001111234456667778765432110 011100 0111 111 235
Q ss_pred HHHHHHHHHHHHcCCeEEE-eceeEEEecC-CccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 408 LYLNAVKKKAISLGAEYVR-GEVVDFLRRR-NNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 408 ~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~-~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
.++..|.+.+++.|++|+. ++|++|..++ + ++|.++.. +.++ ..++|+.||+|||++..
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~-------------g~v~gv~~-~~~~--~~i~ak~VIlAtGG~~~ 184 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAFD-------------GAHDGPLT-TVGT--HRITTQALVLAAGGLGA 184 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCCC-------------CeEEEEEE-cCCc--EEEEcCEEEEcCCCccc
Confidence 7889999999999999995 5999998763 3 56777443 2223 48999999999998865
No 171
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.63 E-value=4.1e-07 Score=101.94 Aligned_cols=64 Identities=20% Similarity=0.259 Sum_probs=52.9
Q ss_pred eeeCHHHHHHHHHHHHHHc-CCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 402 GWFDPWLYLNAVKKKAISL-GAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 402 g~i~~~~~~~~l~~~~~~~-Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
+.+|...+...+.+.+.+. |+++++++|+++..++ ++|.+ |.+.+| ..+.|+.||+|||.|
T Consensus 95 aQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~--------------grV~G--V~t~dG--~~I~Ak~VIlATGTF 156 (618)
T PRK05192 95 AQADRKLYRAAMREILENQPNLDLFQGEVEDLIVEN--------------GRVVG--VVTQDG--LEFRAKAVVLTTGTF 156 (618)
T ss_pred HhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecC--------------CEEEE--EEECCC--CEEECCEEEEeeCcc
Confidence 4789999999999988866 8999888899988765 56767 667778 489999999999987
Q ss_pred cHH
Q psy10285 481 SGQ 483 (673)
Q Consensus 481 s~~ 483 (673)
+..
T Consensus 157 L~g 159 (618)
T PRK05192 157 LRG 159 (618)
T ss_pred hhc
Confidence 643
No 172
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.63 E-value=1e-06 Score=89.62 Aligned_cols=67 Identities=22% Similarity=0.273 Sum_probs=48.7
Q ss_pred eCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcC----CC---CeeEEecCEEEE
Q psy10285 404 FDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE----KG---ELKTITFAICVI 475 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~----~G---~~~~i~ad~VVl 475 (673)
.+...++..|.+.+.+.|+++++ +.|.++..+++. .+|.++.+... .| ...+++|+.||.
T Consensus 97 ~~~~el~~~L~~~a~e~GV~I~~~t~V~dli~~~~~------------~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVd 164 (254)
T TIGR00292 97 ADSAEFISTLASKALQAGAKIFNGTSVEDLITRDDT------------VGVAGVVINWSAIELAGLHVDPLTQRSRVVVD 164 (254)
T ss_pred eeHHHHHHHHHHHHHHcCCEEECCcEEEEEEEeCCC------------CceEEEEeCCccccccCCCCCCEEEEcCEEEE
Confidence 35568899999999999999995 489999876530 26778554311 11 135899999999
Q ss_pred cCCCCcH
Q psy10285 476 AAGAYSG 482 (673)
Q Consensus 476 AtG~~s~ 482 (673)
|||..+.
T Consensus 165 ATG~~a~ 171 (254)
T TIGR00292 165 ATGHDAE 171 (254)
T ss_pred eecCCch
Confidence 9997653
No 173
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.62 E-value=2.9e-06 Score=92.68 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=50.1
Q ss_pred eeCHHHHHHHHHHHHHHcC-CeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 403 WFDPWLYLNAVKKKAISLG-AEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~G-v~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
.++...+.+.|.+.+.+.+ ++++.+ +|+++..+++ ++.|.+.+|+ +++||.||.|.|.+
T Consensus 105 ~i~r~~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-----------------~v~v~~~~g~--~~~ad~vV~AdG~~ 165 (396)
T PRK08163 105 VIHRADIHLSLLEAVLDHPLVEFRTSTHVVGIEQDGD-----------------GVTVFDQQGN--RWTGDALIGCDGVK 165 (396)
T ss_pred EEEHHHHHHHHHHHHHhcCCcEEEeCCEEEEEecCCC-----------------ceEEEEcCCC--EEecCEEEECCCcC
Confidence 3556778888998887764 888854 8999987653 5667777773 79999999999999
Q ss_pred cHHHHH
Q psy10285 481 SGQVAR 486 (673)
Q Consensus 481 s~~l~~ 486 (673)
+.....
T Consensus 166 S~~r~~ 171 (396)
T PRK08163 166 SVVRQS 171 (396)
T ss_pred hHHHhh
Confidence 875433
No 174
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.62 E-value=5.8e-07 Score=101.06 Aligned_cols=63 Identities=17% Similarity=0.105 Sum_probs=50.8
Q ss_pred cCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEc
Q psy10285 398 LEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIA 476 (673)
Q Consensus 398 ~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlA 476 (673)
.+.+|+ ..++..|.+.+++.|++|+. ++|++|..++ +++.+ |++.+|+ +++||.||+|
T Consensus 223 ~~~gG~---~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~--------------~~~~g--v~~~~g~--~~~ad~vV~a 281 (493)
T TIGR02730 223 YPKGGV---GQIAESLVKGLEKHGGQIRYRARVTKIILEN--------------GKAVG--VKLADGE--KIYAKRIVSN 281 (493)
T ss_pred cCCChH---HHHHHHHHHHHHHCCCEEEeCCeeeEEEecC--------------CcEEE--EEeCCCC--EEEcCEEEEC
Confidence 455555 67899999999999999995 5999998765 45555 6777783 7999999999
Q ss_pred CCCCc
Q psy10285 477 AGAYS 481 (673)
Q Consensus 477 tG~~s 481 (673)
+|.+.
T Consensus 282 ~~~~~ 286 (493)
T TIGR02730 282 ATRWD 286 (493)
T ss_pred CChHH
Confidence 99874
No 175
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.61 E-value=6e-06 Score=90.20 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=50.9
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCC-----CCeeEEecCEEEEcC
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEK-----GELKTITFAICVIAA 477 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~-----G~~~~i~ad~VVlAt 477 (673)
.++-..+-..|.+.+.+.|++++.+.++++....++ +....+.+...+ |+..+++|+.||.|+
T Consensus 89 ~v~R~~~d~~L~~~a~~~G~~v~~~~~~~i~~~~~~------------~~~~~v~~~~~~~~~~~g~~~~i~a~~VIgAD 156 (398)
T TIGR02028 89 MLRREVLDSFLRRRAADAGATLINGLVTKLSLPADA------------DDPYTLHYISSDSGGPSGTRCTLEVDAVIGAD 156 (398)
T ss_pred eeeHHHHHHHHHHHHHHCCcEEEcceEEEEEeccCC------------CceEEEEEeeccccccCCCccEEEeCEEEECC
Confidence 466677888899999999999987777777542210 222333333332 433589999999999
Q ss_pred CCCcHHHHHHcCC
Q psy10285 478 GAYSGQVARMLKI 490 (673)
Q Consensus 478 G~~s~~l~~~~g~ 490 (673)
|..+ .+.+.+++
T Consensus 157 G~~S-~v~~~~g~ 168 (398)
T TIGR02028 157 GANS-RVAKEIDA 168 (398)
T ss_pred Ccch-HHHHHhCC
Confidence 9877 56676664
No 176
>PRK12831 putative oxidoreductase; Provisional
Probab=98.61 E-value=2.1e-07 Score=103.48 Aligned_cols=36 Identities=19% Similarity=0.293 Sum_probs=32.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...||+|||||++|+++|+.|++. |++|+|+|+...
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~---G~~V~v~e~~~~ 174 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKM---GYDVTIFEALHE 174 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC---CCeEEEEecCCC
Confidence 457999999999999999999999 999999998653
No 177
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.60 E-value=1.4e-06 Score=94.08 Aligned_cols=33 Identities=33% Similarity=0.563 Sum_probs=30.4
Q ss_pred cEEEECCcHHHHHHHHHHHhhccC--CCeEEEEecCCC
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLD--GCRVAVVDRDFT 281 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~--g~~v~~ie~~~~ 281 (673)
||+|||||++|+++|..|+ +. |.+|.++|+.+.
T Consensus 1 DviIvGaG~AGl~lA~~L~---~~~~g~~V~lle~~~~ 35 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQ---RARPDFRIRVIEAGRT 35 (370)
T ss_pred CEEEECccHHHHHHHHHHH---hcCCCCeEEEEeCCCC
Confidence 7999999999999999998 54 999999999876
No 178
>PRK09126 hypothetical protein; Provisional
Probab=98.60 E-value=4.2e-06 Score=91.22 Aligned_cols=67 Identities=22% Similarity=0.237 Sum_probs=48.5
Q ss_pred CHHHHHHHHHHHHHH-cCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 405 DPWLYLNAVKKKAIS-LGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 405 ~~~~~~~~l~~~~~~-~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
....+.+.|.+.+.+ .|++++. ++|++++.+++ ++.|.+.+| .+++||.||.|.|..+.
T Consensus 108 ~~~~l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~~-----------------~~~v~~~~g--~~~~a~~vI~AdG~~S~ 168 (392)
T PRK09126 108 PNHLIRRAAYEAVSQQDGIELLTGTRVTAVRTDDD-----------------GAQVTLANG--RRLTARLLVAADSRFSA 168 (392)
T ss_pred eHHHHHHHHHHHHhhCCCcEEEcCCeEEEEEEcCC-----------------eEEEEEcCC--CEEEeCEEEEeCCCCch
Confidence 335566677777654 5899995 58999987664 455777777 38999999999998764
Q ss_pred HHHHHcCCC
Q psy10285 483 QVARMLKIG 491 (673)
Q Consensus 483 ~l~~~~g~~ 491 (673)
+.+.+++.
T Consensus 169 -vr~~~g~~ 176 (392)
T PRK09126 169 -TRRQLGIG 176 (392)
T ss_pred -hhHhcCCC
Confidence 55555543
No 179
>PRK08013 oxidoreductase; Provisional
Probab=98.59 E-value=5.7e-06 Score=90.48 Aligned_cols=67 Identities=21% Similarity=0.170 Sum_probs=50.9
Q ss_pred eCHHHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 404 FDPWLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
+.-..+...|.+.+.+. |++++. ++|++++.+++ ++.|...+| .+++||.||-|.|.+|
T Consensus 108 i~r~~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~-----------------~v~v~~~~g--~~i~a~lvVgADG~~S 168 (400)
T PRK08013 108 IENSVIHYALWQKAQQSSDITLLAPAELQQVAWGEN-----------------EAFLTLKDG--SMLTARLVVGADGANS 168 (400)
T ss_pred EEhHHHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC-----------------eEEEEEcCC--CEEEeeEEEEeCCCCc
Confidence 44457778888888775 799985 59999987764 566777777 4899999999999986
Q ss_pred HHHHHHcCC
Q psy10285 482 GQVARMLKI 490 (673)
Q Consensus 482 ~~l~~~~g~ 490 (673)
.+-+.+++
T Consensus 169 -~vR~~~~~ 176 (400)
T PRK08013 169 -WLRNKADI 176 (400)
T ss_pred -HHHHHcCC
Confidence 45455554
No 180
>PRK06996 hypothetical protein; Provisional
Probab=98.57 E-value=2.5e-06 Score=93.27 Aligned_cols=71 Identities=8% Similarity=-0.037 Sum_probs=51.6
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCC-eeEEecCEEEEcCCCC
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGE-LKTITFAICVIAAGAY 480 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~-~~~i~ad~VVlAtG~~ 480 (673)
.++-..+...|.+.+.+.|++++. .+|++++.+++ ++.+...+|. ..+++||.||.|.|..
T Consensus 111 ~v~r~~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~-----------------~v~v~~~~~~g~~~i~a~lvIgADG~~ 173 (398)
T PRK06996 111 VVRYGSLVAALARAVRGTPVRWLTSTTAHAPAQDAD-----------------GVTLALGTPQGARTLRARIAVQAEGGL 173 (398)
T ss_pred EEEhHHHHHHHHHHHHhCCCEEEcCCeeeeeeecCC-----------------eEEEEECCCCcceEEeeeEEEECCCCC
Confidence 355567889999999999999885 48999977664 5666655431 1479999999999975
Q ss_pred cHHHHHHcCC
Q psy10285 481 SGQVARMLKI 490 (673)
Q Consensus 481 s~~l~~~~g~ 490 (673)
...+-+.+++
T Consensus 174 ~s~~r~~~~~ 183 (398)
T PRK06996 174 FHDQKADAGD 183 (398)
T ss_pred chHHHHHcCC
Confidence 4444455554
No 181
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.56 E-value=1e-07 Score=102.00 Aligned_cols=95 Identities=20% Similarity=0.234 Sum_probs=74.0
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhc---CCCcccccccCchH
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTS---GQPTQESKVSDPHK 178 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~---~~~~~~~~~~~~~~ 178 (673)
||||||||++|+++|++|++. |++|+|||++. ++.++|..+.+.++.. ........+...+.
T Consensus 1 DvvIIGaGi~G~~~A~~La~~---G~~V~l~e~~~------------~~~~aS~~~~g~~~~~~~~~~~~~~~~l~~~~~ 65 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR---GHSVTLLERGD------------IGSGASGRSGGLVRPGISSYPDPQYARLARESV 65 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT---TSEEEEEESSS------------TTSSGGGSSSEEEECSGSHHSSHHHHHHHHHHH
T ss_pred CEEEECcCHHHHHHHHHHHHC---CCeEEEEeecc------------ccccccccccccccccccccccccccchhhhhc
Confidence 899999999999999999999 99999999995 3667777777777654 22224455677888
Q ss_pred HHHHhhcccccCCcc-CCCceEEEeeCchhhHHH
Q psy10285 179 ALKETTNRYSFNDAE-APSGYVDPAKTDEHYHIK 211 (673)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~~g~l~v~~~~~~~~~~ 211 (673)
+.|+++.+..+.... .+.+.+.++..+...+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~ 99 (358)
T PF01266_consen 66 EFWRELAEEYGIPVGFRPCGSLYLAEDEEDAESL 99 (358)
T ss_dssp HHHHHHHHHTTSSCEEEECEEEEEESSHHHHHHH
T ss_pred cchhhhhhhcCcccccccccccccccchhhhhhc
Confidence 888888666666666 688999999776665544
No 182
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.55 E-value=1.2e-07 Score=102.34 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=68.9
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCC-cccccccCchHH
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQP-TQESKVSDPHKA 179 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~-~~~~~~~~~~~~ 179 (673)
|||+|||||++|+++|++|++. |++|+|||++.. +.++|+++.+.+...+.. .....+...+.+
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~---G~~V~vle~~~~------------~~gaS~~~~G~~~~~~~~~~~~~~l~~~~~~ 65 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR---GLSVTVIERSSR------------AQGASVRNFGQVWPTGQAPGPAWDRARRSRE 65 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC---CCeEEEEeCCCC------------CCCcccccCceEEecCCCCccHHHHHHHHHH
Confidence 6999999999999999999999 999999999864 566777777766432221 223345667777
Q ss_pred HHHhhcccccCCccCCCceEEEeeCchhhHHHH
Q psy10285 180 LKETTNRYSFNDAEAPSGYVDPAKTDEHYHIKR 212 (673)
Q Consensus 180 ~~~~~~~~~~~~~~~~~g~l~v~~~~~~~~~~~ 212 (673)
+|+++.+..+... ...|.+.++.+++..+.+.
T Consensus 66 ~~~~l~~~~~~~~-~~~g~l~~~~~~~~~~~~~ 97 (365)
T TIGR03364 66 IWLELAAKAGIWV-RENGSLHLARTEEELAVLE 97 (365)
T ss_pred HHHHHHHHcCCCE-EeCCEEEEeCCHHHHHHHH
Confidence 8887755443322 5778888887766554443
No 183
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.55 E-value=1.8e-06 Score=103.57 Aligned_cols=186 Identities=15% Similarity=0.127 Sum_probs=99.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||+|.+|+.+|+.++ ..|.+|+|+||... ..++++....+++........ ... ..++.
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa---~~G~~V~lleK~~~-------~~sg~~~~g~~gi~~~~~~~~-ds~----e~~~~ 76 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAA---EHGANVLLLEKAHV-------RHSGALAMGMDGVNNAVIPGK-AEP----EDYVA 76 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHH---HCCCeEEEEecccc-------cCCCcccCCchhhhcccCCCc-cCH----HHHHH
Confidence 5689999999999999999999 78999999999886 122222222223321111100 000 01122
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccchHH----HHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEecc
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAA----TLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 398 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~ 398 (673)
++..... + ..+++... .-...++++.++|+++.......... ..+. ..+.+..
T Consensus 77 Dt~~~g~--------------g---l~d~~~v~~~~~~a~~~i~~L~~~Gv~f~~~~~G~~~~--~~~~----~~~~~~~ 133 (897)
T PRK13800 77 EITRAND--------------G---IVNQRTVYQTATRGFAMVQRLERYGVKFEKDEHGEYAV--RRVH----RSGSYVL 133 (897)
T ss_pred HHHhhcC--------------C---CCCHHHHHHHHHhHHHHHHHHHHcCCceeeCCCCCEee--eeec----cCCCccc
Confidence 2211000 0 11111111 11234556677787664321110000 0000 0000100
Q ss_pred CCceeeCHHHHHHHHHHHHHHc----CCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEEecCE
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISL----GAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTITFAI 472 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~----Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i~ad~ 472 (673)
+ .-....++..|.+.+++. ++++.+. .++++..++ |+|.|+.+. +.+|+...+.|+.
T Consensus 134 ~---~~tG~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~--------------g~v~Gv~~~~~~~g~~~~i~Aka 196 (897)
T PRK13800 134 P---MPEGKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG--------------GRAVGAAALNTRTGEFVTVGAKA 196 (897)
T ss_pred c---CCCchhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC--------------CEEEEEEEEecCCCcEEEEECCE
Confidence 0 112345666777776654 5677644 677887654 688887654 4577667899999
Q ss_pred EEEcCCCCcHH
Q psy10285 473 CVIAAGAYSGQ 483 (673)
Q Consensus 473 VVlAtG~~s~~ 483 (673)
||+|||+++..
T Consensus 197 VILATGG~g~~ 207 (897)
T PRK13800 197 VILATGPCGRL 207 (897)
T ss_pred EEECCCccccC
Confidence 99999998753
No 184
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.55 E-value=6.4e-07 Score=95.36 Aligned_cols=60 Identities=27% Similarity=0.346 Sum_probs=49.8
Q ss_pred eeeCHHHHHHHHHHHHHH-cCCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCC
Q psy10285 402 GWFDPWLYLNAVKKKAIS-LGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479 (673)
Q Consensus 402 g~i~~~~~~~~l~~~~~~-~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~ 479 (673)
..+|-..|...+.+.+++ .++++++++|++|..++ ++|.+ |.+.+| ..+.+|.||+|||.
T Consensus 90 ~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~--------------~~v~G--V~~~~g--~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 90 AQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVEN--------------GKVKG--VVTKDG--EEIEADAVVLATGT 150 (392)
T ss_dssp EEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECT--------------TEEEE--EEETTS--EEEEECEEEE-TTT
T ss_pred hhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecC--------------CeEEE--EEeCCC--CEEecCEEEEeccc
Confidence 368889999999999887 48899889999999877 68888 888888 58999999999999
No 185
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.55 E-value=1.2e-07 Score=104.02 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=67.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCC-------------
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQP------------- 167 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~------------- 167 (673)
+||||||||++|+++|++|++. |++|+|||++.. ++.++|+++.+.+......
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~---g~~V~vle~~~~-----------~~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~ 67 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR---GYQVTVFDRHRY-----------AAMETSFANGGQLSASNAEVWNHWATVLKGLK 67 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC---CCeEEEEeCCCC-----------CCcCcccccCCEEeecccccccChHHHHhhhH
Confidence 5999999999999999999999 999999999862 2445555555544221100
Q ss_pred -------------------------------------cccccccCchHHHHHhhcccccCCcc-CCCceEEEeeCchhhH
Q psy10285 168 -------------------------------------TQESKVSDPHKALKETTNRYSFNDAE-APSGYVDPAKTDEHYH 209 (673)
Q Consensus 168 -------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~~~~~~~~ 209 (673)
.....++..+.++|+++.+..+.++. .++|.+.++.+++..+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~~ 147 (410)
T PRK12409 68 WMLRKDAPLLLNPKPSWHKYSWLAEFLAHIPNYRANTIETVRLAIAARKHLFDIAEREGIDFDLERRGILHIYHDKAGFD 147 (410)
T ss_pred HhcCCCCCeEecCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcceeecCcEEEEECCHHHHH
Confidence 00122344555666677666667776 7899999988776655
Q ss_pred HHH
Q psy10285 210 IKR 212 (673)
Q Consensus 210 ~~~ 212 (673)
.+.
T Consensus 148 ~l~ 150 (410)
T PRK12409 148 HAK 150 (410)
T ss_pred hcc
Confidence 443
No 186
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.54 E-value=9e-07 Score=92.61 Aligned_cols=67 Identities=13% Similarity=0.121 Sum_probs=49.5
Q ss_pred HHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCC--eeEEecCEEEEcCCC-CcHHHHH
Q psy10285 412 AVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGE--LKTITFAICVIAAGA-YSGQVAR 486 (673)
Q Consensus 412 ~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~--~~~i~ad~VVlAtG~-~s~~l~~ 486 (673)
.++..+.+. |++|+. +.|++|..+.++ +++++|.+...++. ...+.++.||+|+|+ .|++||-
T Consensus 197 ~~L~~a~~~~n~~l~~~~~V~~i~~~~~~------------~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LLl 264 (296)
T PF00732_consen 197 TYLPPALKRPNLTLLTNARVTRIIFDGDG------------GRATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLLL 264 (296)
T ss_dssp HHHHHHTTTTTEEEEESEEEEEEEEETTS------------TEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHHH
T ss_pred cccchhhccCCccEEcCcEEEEEeeeccc------------cceeeeeeeecCCcceeeeccceeEEeccCCCCChhhhc
Confidence 344444444 899995 599999775321 78999988888775 467888999999996 5888888
Q ss_pred HcCC
Q psy10285 487 MLKI 490 (673)
Q Consensus 487 ~~g~ 490 (673)
..|+
T Consensus 265 ~SGi 268 (296)
T PF00732_consen 265 RSGI 268 (296)
T ss_dssp HTTE
T ss_pred cccc
Confidence 7776
No 187
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=98.53 E-value=3.7e-07 Score=97.48 Aligned_cols=184 Identities=21% Similarity=0.258 Sum_probs=111.0
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHHHHH
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIK 325 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~~l~ 325 (673)
||+|||+|.+||.+|+.|+ .. .+|+|+-|.+. ..++|.+..|++...+......+. ..-..+.
T Consensus 9 dV~IiGsG~AGL~~AL~L~---~~-~~V~vltk~~~--------~~~sS~~AQGGIAa~~~~~Ds~~~-----Hv~DTL~ 71 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLA---PS-FRVTVLTKGPL--------GESSSYWAQGGIAAALSEDDSPEL-----HVADTLA 71 (518)
T ss_pred cEEEECCcHHHHHHHHhCC---CC-CcEEEEeCCCC--------CCccchhhcCceEeeeCCCCCHHH-----HHHHHHH
Confidence 8999999999999999998 55 99999999999 457888888998876655432221 0111111
Q ss_pred hhccccCCCCCCcceeecCeEEEeccchH----HHHHHHHHHHHHcCCcceeeCHhhHH-hhCCCCCcccceeEEeccCC
Q psy10285 326 HHCHVIGEDEPDVNFTPNGYLFCASQDGA----ATLEKNHQLQKELGAKNVLLGPEQLK-AKFPWLNTDDIALACLGLEK 400 (673)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~----~~l~~~~~~~~~~g~~~~~l~~~~~~-~~~p~~~~~~~~~g~~~~~~ 400 (673)
. |.-.+ +++.. ..-...++++...|+++..-....+. .+...-. ..-++..
T Consensus 72 A-----------------G~glc-D~~aV~~iv~~~~~ai~~Li~~Gv~FDr~~~g~~~lt~EggHS----~rRIlH~-- 127 (518)
T COG0029 72 A-----------------GAGLC-DEEAVEFIVSEAPEAIEWLIDLGVPFDRDEDGRLHLTREGGHS----RRRILHA-- 127 (518)
T ss_pred h-----------------cCCCC-cHHHHHHHHHhHHHHHHHHHHcCCCCcCCCCCceeeeeecccC----CceEEEe--
Confidence 1 00000 11111 12233455566677654332211000 0000000 0011111
Q ss_pred ceeeCHHHHHHHHHHHHHH-cCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCC
Q psy10285 401 EGWFDPWLYLNAVKKKAIS-LGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAG 478 (673)
Q Consensus 401 ~g~i~~~~~~~~l~~~~~~-~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG 478 (673)
++ --...++..|.+.+++ .++++++. .+.+|..+++ ..+.|+.+...+++..++.++.||+|||
T Consensus 128 ~~-~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~-------------~~~~Gv~~~~~~~~~~~~~a~~vVLATG 193 (518)
T COG0029 128 AD-ATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG-------------IGVAGVLVLNRNGELGTFRAKAVVLATG 193 (518)
T ss_pred cC-CccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC-------------ceEeEEEEecCCCeEEEEecCeEEEecC
Confidence 11 2346888999999887 59999976 8999988773 3555866655543456899999999999
Q ss_pred CCcHHH
Q psy10285 479 AYSGQV 484 (673)
Q Consensus 479 ~~s~~l 484 (673)
+.....
T Consensus 194 G~g~ly 199 (518)
T COG0029 194 GLGGLY 199 (518)
T ss_pred CCcccc
Confidence 876544
No 188
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.52 E-value=5.3e-06 Score=90.62 Aligned_cols=66 Identities=21% Similarity=0.212 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc---
Q psy10285 406 PWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS--- 481 (673)
Q Consensus 406 ~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s--- 481 (673)
...++..|.+.+++.|++++. ++|+++..+++ .+.|.+. + .++.+|.||+|+|+++
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~-----------------~~~v~~~-~--~~i~ad~VIlAtG~~s~p~ 163 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDN-----------------GFGVETS-G--GEYEADKVILATGGLSYPQ 163 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-----------------eEEEEEC-C--cEEEcCEEEECCCCcccCC
Confidence 467888899999999999995 48999976553 4456664 4 2789999999999866
Q ss_pred -------HHHHHHcCCC
Q psy10285 482 -------GQVARMLKIG 491 (673)
Q Consensus 482 -------~~l~~~~g~~ 491 (673)
..++..+|..
T Consensus 164 ~gs~G~g~~la~~lG~~ 180 (400)
T TIGR00275 164 LGSTGDGYEIAESLGHT 180 (400)
T ss_pred CCCCcHHHHHHHHCCCC
Confidence 4677777753
No 189
>PRK07208 hypothetical protein; Provisional
Probab=98.52 E-value=3.1e-06 Score=94.89 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
..+.+.|.+.+++.|++|+. ++|++|..+++ +.+..+.....+|+..++.||.||.|+..+
T Consensus 218 ~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~-------------~~v~~~~~~~~~g~~~~~~ad~VI~a~p~~ 279 (479)
T PRK07208 218 GQLWETAAEKLEALGGKVVLNAKVVGLHHDGD-------------GRIAVVVVNDTDGTEETVTADQVISSMPLR 279 (479)
T ss_pred chHHHHHHHHHHHcCCEEEeCCEEEEEEEcCC-------------cEEEEEEEEcCCCCEEEEEcCEEEECCCHH
Confidence 57888999999999999984 59999998764 333333233345643468999999998764
No 190
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.52 E-value=1.7e-06 Score=98.49 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecC-EEEEcCCCCcH
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFA-ICVIAAGAYSG 482 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad-~VVlAtG~~s~ 482 (673)
..+...|.+.+++.|++++. +.|++|..++ ++|.++.+.. +|+...+.|+ .||+|||++..
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~--------------g~v~Gv~~~~-~g~~~~i~A~~~VIlAtGG~~~ 270 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVED--------------GRVTGVHAAE-SGEPQLIRARRGVILASGGFEH 270 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC--------------CEEEEEEEEe-CCcEEEEEeceeEEEccCCcCc
Confidence 35677788888889999995 5999998764 6888877654 5555678996 59999999876
No 191
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.52 E-value=4.6e-07 Score=100.27 Aligned_cols=66 Identities=24% Similarity=0.300 Sum_probs=52.1
Q ss_pred CCceeeCHHHHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCC
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAG 478 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG 478 (673)
..+.++|...+-+.|.+.+++.||+++++.|+++..+++ +.|.+ |++.+| .+++||.||.|+|
T Consensus 146 ~~ayhlDR~~fd~~L~~~A~~~Gv~~~~g~V~~v~~~~~-------------g~i~~--v~~~~g--~~i~ad~~IDASG 208 (454)
T PF04820_consen 146 NYAYHLDRAKFDQFLRRHAEERGVEVIEGTVVDVELDED-------------GRITA--VRLDDG--RTIEADFFIDASG 208 (454)
T ss_dssp S-EEEEEHHHHHHHHHHHHHHTT-EEEET-EEEEEE-TT-------------SEEEE--EEETTS--EEEEESEEEE-SG
T ss_pred CeeEEEeHHHHHHHHHHHHhcCCCEEEeCEEEEEEEcCC-------------CCEEE--EEECCC--CEEEEeEEEECCC
Confidence 456679999999999999999999999888999888775 56666 888888 5899999999999
Q ss_pred CCc
Q psy10285 479 AYS 481 (673)
Q Consensus 479 ~~s 481 (673)
..+
T Consensus 209 ~~s 211 (454)
T PF04820_consen 209 RRS 211 (454)
T ss_dssp GG-
T ss_pred ccc
Confidence 654
No 192
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.51 E-value=5.6e-07 Score=107.42 Aligned_cols=36 Identities=25% Similarity=0.398 Sum_probs=32.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...+|+|||||+|||++|++|++. |++|+|+|+...
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~---G~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE---GFPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC---CCeEEEEeeCCC
Confidence 347899999999999999999999 999999999763
No 193
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=98.51 E-value=6e-07 Score=99.52 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=33.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..++|+|||||++|+++|+.|++. |++|+|+|+...
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~---G~~V~vie~~~~ 167 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKA---GHSVTVFEALHK 167 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC---CCcEEEEecCCC
Confidence 458999999999999999999999 999999998753
No 194
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.50 E-value=2e-07 Score=102.51 Aligned_cols=97 Identities=18% Similarity=0.301 Sum_probs=68.0
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCc-------------
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPT------------- 168 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~------------- 168 (673)
||+|||||++|+++|++|++. |.+|+|+|++.. ++.++|++|.+.+.......
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~---g~~V~vle~~~~-----------~~~~aS~~n~g~i~~~~~~~~~~~~~~~~~~~~ 67 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA---GHEVTVIDRQPG-----------PALETSFANAGQISPGYAAPWAAPGVPLKAIKW 67 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC---CCEEEEEeCCCc-----------hhhhheeccCcccccccccccCCCchhhhhhhh
Confidence 899999999999999999999 999999999853 35556666665543321100
Q ss_pred ---------------------------------------ccccccCchHHHHHhhcccccCCcc-CCCceEEEeeCchhh
Q psy10285 169 ---------------------------------------QESKVSDPHKALKETTNRYSFNDAE-APSGYVDPAKTDEHY 208 (673)
Q Consensus 169 ---------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~~~~~~~ 208 (673)
....+...+.++|+++.+..+.++. ...|.+.++.+++..
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~l~~~~~~~~~~~~~G~l~~a~~~~~~ 147 (416)
T PRK00711 68 LFQRHAPLAIRPDGDPFQLRWMWQMLRNCTASRYAVNKSRMVRLAEYSRDCLKALRAETGIQYEGRQGGTLQLFRTQQQL 147 (416)
T ss_pred ccCCCCCeEecCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccccCcEEEEECCHHHH
Confidence 0112233456667777666677777 788999999887665
Q ss_pred HHHH
Q psy10285 209 HIKR 212 (673)
Q Consensus 209 ~~~~ 212 (673)
+...
T Consensus 148 ~~l~ 151 (416)
T PRK00711 148 DAAA 151 (416)
T ss_pred HHHH
Confidence 5544
No 195
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.49 E-value=2.8e-06 Score=96.99 Aligned_cols=185 Identities=17% Similarity=0.197 Sum_probs=97.9
Q ss_pred cEEEECCcHHHHHHHHHHHhh-ccCCCeEEEEecCCCCCCCcccccccccccccC--ceecccCcchhhHHHHHHHHHHH
Q psy10285 246 DILIIGGGAIGSSIAYFIKEK-VLDGCRVAVVDRDFTVNYDLDEYARASTTLSVG--GLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~-~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g--~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
||+|||+|.+|+.+|+.+++. ...|.+|+||||... . .+++ .+.| ++...+......+ ....+++
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~G~~VilieK~~~-------~-~s~s-~A~G~~gi~~~~~~~~g~D---s~e~~~~ 68 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKKGLKIVLVEKANL-------E-RSGA-VAQGLSAINTYLGTRFGEN---NAEDYVR 68 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhCCCeEEEEEccCC-------C-CCCc-cccccchhhhhhhcccCCC---CHHHHHH
Confidence 799999999999999998610 035889999999887 1 1222 2333 1221111000000 0011222
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccc----hHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEecc
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQD----GAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL 398 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~ 398 (673)
....... + +.+++ -.+.....++++.++|+++....... . ... .+.+..
T Consensus 69 d~~~~~~--------------g---l~d~~lV~~lv~~s~~~i~~L~~~Gv~F~~~~~~G--~----~~~----~g~~~~ 121 (614)
T TIGR02061 69 YVRTDLM--------------G---LVREDLIFDMARHVDDSVHLFEEWGLPLWIKPEDG--K----YVR----EGRWQI 121 (614)
T ss_pred HHHHhcC--------------C---CCcHHHHHHHHHHHHHHHHHHHHcCCCceecCCCC--c----ccc----CCCccc
Confidence 2111100 1 11111 12223344556667787765321000 0 000 010100
Q ss_pred CCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEc-CCCCeeEEecCEEEEc
Q psy10285 399 EKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD-EKGELKTITFAICVIA 476 (673)
Q Consensus 399 ~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t-~~G~~~~i~ad~VVlA 476 (673)
.. ....+...+...+++.++++++ +.|+++..++++ .|+|.|+.+.. .+|+...+.|+.||+|
T Consensus 122 ~~----gG~~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~-----------~GrV~Gv~~~~~~~g~~~~i~AkaVVLA 186 (614)
T TIGR02061 122 MI----HGESYKPIVAEAAKNALGDIFERIFIVKLLLDKNT-----------PNRIAGAVGFNVRANEVHVFKAKTVIVA 186 (614)
T ss_pred Cc----CchhHHHHHHHHHHhCCCeEEcccEEEEEEecCCC-----------CCeEEEEEEEEeCCCcEEEEECCEEEEC
Confidence 11 1234445556666677789885 599999875420 04788977644 4666567999999999
Q ss_pred CCCCcHHH
Q psy10285 477 AGAYSGQV 484 (673)
Q Consensus 477 tG~~s~~l 484 (673)
||+|+...
T Consensus 187 TGG~~~ly 194 (614)
T TIGR02061 187 AGGAVNVY 194 (614)
T ss_pred CCcccccc
Confidence 99997543
No 196
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.48 E-value=3e-07 Score=102.47 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=70.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCC----------c
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQP----------T 168 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~----------~ 168 (673)
.++||+|||||++|+++||+|++. .+|++|+|||++.. +.++|++|.+.+...... .
T Consensus 23 ~~~DVvIIGgGi~Gls~A~~La~~-~~G~~V~vlE~~~~------------g~GaSgrn~G~~~~~~~~~~~~~~~~g~~ 89 (460)
T TIGR03329 23 TQADVCIVGGGFTGLWTAIMIKQQ-RPALDVLVLEADLC------------GAGASGRNGGCMLTWSTKFFTLKRLFGEA 89 (460)
T ss_pred ceeCEEEECCCHHHHHHHHHHHHh-CCCCeEEEEeCCcc------------ccccccccCccccccccCHHHHHHhhCHH
Confidence 458999999999999999999996 23689999999864 667777777754321110 0
Q ss_pred ccccccCchHHHHHh---hcccccCCcc-CCCceEEEeeCchhhHHHH----Hhhhccc
Q psy10285 169 QESKVSDPHKALKET---TNRYSFNDAE-APSGYVDPAKTDEHYHIKR----AMRILKL 219 (673)
Q Consensus 169 ~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~g~l~v~~~~~~~~~~~----~~~~~g~ 219 (673)
....+...+...++. +.+..+.++. ...|.+.++.++++.+.+. .+...++
T Consensus 90 ~~~~l~~~~~~~~~~~~~l~~~~~i~~~~~~~G~l~~a~~~~~~~~l~~~~~~~~~~G~ 148 (460)
T TIGR03329 90 EAARLVKASEQAVLEIAAFCEQHNIDAQLRLDGTLYTATNPAQVGSMDPVVDALERRGI 148 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCcccCCEEEEecCHHHHHHHHHHHHHHHHhCC
Confidence 111122223333333 3333456777 7799999998877665554 3444554
No 197
>PRK07045 putative monooxygenase; Reviewed
Probab=98.48 E-value=4.7e-05 Score=82.96 Aligned_cols=36 Identities=36% Similarity=0.558 Sum_probs=33.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..++|+|||||++|+.+|..|+ +.|.+|+|+|+.+.
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~---~~G~~v~v~E~~~~ 39 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLG---ARGHSVTVVERAAR 39 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHH---hcCCcEEEEeCCCc
Confidence 4578999999999999999999 89999999999887
No 198
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=98.47 E-value=5.9e-07 Score=96.75 Aligned_cols=100 Identities=21% Similarity=0.204 Sum_probs=71.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCccc---ccccCc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPTQE---SKVSDP 176 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~~~~ 176 (673)
.|||+|||||++|+++|+.|++. .++++|+||||... ++.+.|.+|++.++........ ..++..
T Consensus 3 ~~DvvIIGgGI~G~a~a~~Ls~~-~p~~~V~llEk~~~-----------~a~~sS~~NSgviHag~~y~p~slka~l~~~ 70 (429)
T COG0579 3 DYDVVIIGGGIMGAATAYELSEY-EPDLSVALLEKEDG-----------VAQESSSNNSGVIHAGLYYTPGSLKAKLCVA 70 (429)
T ss_pred ceeEEEECCcHHHHHHHHHHHHh-CCCceEEEEEccCc-----------cccccccCcccceeccccCCCcchhhHHHHH
Confidence 58999999999999999999999 22299999999875 6778888888887655332222 123333
Q ss_pred hHHHHHhhcccccCCccCCCceEEEeeCchhhHHHH
Q psy10285 177 HKALKETTNRYSFNDAEAPSGYVDPAKTDEHYHIKR 212 (673)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~g~l~v~~~~~~~~~~~ 212 (673)
....+..+.+...... ...+++.++.+++..+.++
T Consensus 71 g~~~~~~~~kq~~~~f-~~~g~l~vA~~e~e~~~L~ 105 (429)
T COG0579 71 GNINEFAICKQLGIPF-INCGKLSVATGEEEVERLE 105 (429)
T ss_pred HHHHHHHHHHHhCCcc-cccCeEEEEEChHHHHHHH
Confidence 3444444444333333 4559999999999888887
No 199
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.46 E-value=2.9e-05 Score=88.52 Aligned_cols=36 Identities=25% Similarity=0.500 Sum_probs=33.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..++|+|||+|++|+++|..|+ +.|.+|+|+||.+.
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~---~~G~~v~viE~~~~ 57 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLA---QQGVPVVLLDDDDT 57 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHH---hCCCcEEEEeCCCC
Confidence 5689999999999999999999 89999999999875
No 200
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=98.45 E-value=4e-06 Score=89.19 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=28.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccccccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNY 140 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~ 140 (673)
.||+|+||.||++|+.|..|.+.. ..+++.+|+.+...|
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~--~~~~~f~e~~~~f~W 40 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHG--DLKALFLERRPSFSW 40 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH-----EEEEES-SS--T
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcC--CCCEEEEecCCCCCc
Confidence 489999999999999999999984 599999998876443
No 201
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.44 E-value=1.4e-06 Score=103.21 Aligned_cols=36 Identities=28% Similarity=0.547 Sum_probs=32.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..++|+|||||+||+++|+.|++. |++|+|+|+...
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr~---G~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLARA---GHPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC---CCeEEEEecccc
Confidence 347999999999999999999999 999999998753
No 202
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.44 E-value=2.4e-06 Score=95.77 Aligned_cols=63 Identities=21% Similarity=0.344 Sum_probs=52.7
Q ss_pred eeeCHHHHHHHHHHHHHHc-CCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 402 GWFDPWLYLNAVKKKAISL-GAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 402 g~i~~~~~~~~l~~~~~~~-Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
+.+|+..|...+.+.+++. |+++++++|+++..+++ +++.+ |.+.+| ..+.|+.||+|||.|
T Consensus 91 aQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~-------------g~V~G--V~t~~G--~~I~Ad~VILATGtf 153 (617)
T TIGR00136 91 AQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDN-------------DEIKG--VVTQDG--LKFRAKAVIITTGTF 153 (617)
T ss_pred HhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecC-------------CcEEE--EEECCC--CEEECCEEEEccCcc
Confidence 6889999999999999887 78888888888876533 56667 677777 489999999999999
Q ss_pred c
Q psy10285 481 S 481 (673)
Q Consensus 481 s 481 (673)
.
T Consensus 154 L 154 (617)
T TIGR00136 154 L 154 (617)
T ss_pred c
Confidence 4
No 203
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.44 E-value=7.7e-05 Score=81.40 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=32.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..||+|||+|++|+.+|..|+ +.|.+|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~---~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLH---LAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHH---hcCCCEEEEEcCCc
Confidence 478999999999999999999 89999999999875
No 204
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.44 E-value=6.4e-06 Score=93.51 Aligned_cols=67 Identities=19% Similarity=0.132 Sum_probs=48.4
Q ss_pred HHHHHHH-HcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCC-CcHHHHHHc
Q psy10285 412 AVKKKAI-SLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA-YSGQVARML 488 (673)
Q Consensus 412 ~l~~~~~-~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~-~s~~l~~~~ 488 (673)
.++..++ +.|++|+. +.|++|..++ +++++|.+....+....+.++.||+|+|+ ++++||...
T Consensus 198 ~~l~~a~~r~nl~i~~~~~V~rI~~~~--------------~ra~GV~~~~~~~~~~~~~ak~VIlaAGai~SP~LLl~S 263 (532)
T TIGR01810 198 AYLHPAMKRPNLEVQTRAFVTKINFEG--------------NRATGVEFKKGGRKEHTEANKEVILSAGAINSPQLLQLS 263 (532)
T ss_pred HHhhhhccCCCeEEEeCCEEEEEEecC--------------CeEEEEEEEeCCcEEEEEEeeeEEEccCCCCCHHHHHhc
Confidence 3444444 55799995 5999999864 67888766544332334689999999998 899999877
Q ss_pred CCCC
Q psy10285 489 KIGD 492 (673)
Q Consensus 489 g~~~ 492 (673)
|+..
T Consensus 264 GIG~ 267 (532)
T TIGR01810 264 GIGD 267 (532)
T ss_pred CCCC
Confidence 7653
No 205
>PLN02661 Putative thiazole synthesis
Probab=98.44 E-value=4.5e-07 Score=95.05 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=63.8
Q ss_pred CCCCCCCccccccCCCCcccccCCChhhhhhhhccccccCCCCCCCCCCCCCCCccchhhHHHHHHhhhhhHhhhhhccC
Q psy10285 7 DQESSNDKDRISTSGQPTQESKVSDPHKALKETTNRYSFNDAEAPSGYVDPAKTDEHYHIKRAMRILKLDFQKLWRNVQD 86 (673)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (673)
+..+|+++.|+.+...+.. .+.+. ........+...||-.+..+. ++++.... +.++++|+.
T Consensus 24 ~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~~~~~~~~~~~~~~~~~f~-~~~e~~is-----~~i~~~~~~ 85 (357)
T PLN02661 24 SSSSSFAGVRLVTSVRAPL-ADASA-----------PARSSSSSSTAPYDLNNFKFA-PIKESIVS-----REMTRRYMT 85 (357)
T ss_pred cccccccCccccccccCCc-ccccc-----------ccccccCCCCCCCccccccce-echhhHhh-----ccchHhHhh
Confidence 3457777777776544322 11110 111122223344665565555 66665554 445555654
Q ss_pred CCcccCCCCCCCccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 87 PESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 87 ~~~~~~~~~~~~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
.. ....++||+|||||++|+++|++|++.. |++|+|||+..
T Consensus 86 ~l-------~~~~~~DVlIVGaG~AGl~AA~~La~~~--g~kV~viEk~~ 126 (357)
T PLN02661 86 DM-------ITYADTDVVIVGAGSAGLSCAYELSKNP--NVKVAIIEQSV 126 (357)
T ss_pred hh-------hhcccCCEEEECCHHHHHHHHHHHHHcC--CCeEEEEecCc
Confidence 42 2234689999999999999999999753 79999999875
No 206
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=98.43 E-value=2.6e-06 Score=99.37 Aligned_cols=35 Identities=31% Similarity=0.542 Sum_probs=31.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
....|+|||||+||+++|++|++. |++|+|+|+..
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~---Gh~Vtv~E~~~ 416 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS---GHNVTAIDGLK 416 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC---CCeEEEEcccc
Confidence 346899999999999999999999 99999999853
No 207
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.43 E-value=3e-07 Score=99.79 Aligned_cols=93 Identities=12% Similarity=0.146 Sum_probs=59.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCcccccccCchHHH
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPTQESKVSDPHKAL 180 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (673)
|||||||||++|+++||+|+++ |++|+|||+.... .+..++..+.+.+...........+...+.++
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~---g~~V~l~e~~~~~----------~~~~ss~~~~~~~~~~~~~~~~~~l~~~s~~~ 67 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH---GKKTLLLEQFDLP----------HSRGSSHGQSRIIRKAYPEDFYTPMMLECYQL 67 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC---CCeEEEEeccCCC----------CCCCCCCCCCeeeeeccCchhHhHHHHHHHHH
Confidence 6999999999999999999999 9999999997530 01122222222222111112233456677888
Q ss_pred HHhhcccccCCccCCCceEEEeeCch
Q psy10285 181 KETTNRYSFNDAEAPSGYVDPAKTDE 206 (673)
Q Consensus 181 ~~~~~~~~~~~~~~~~g~l~v~~~~~ 206 (673)
|+.+.+..+.+.....|.+.++..+.
T Consensus 68 ~~~l~~~~~~~~~~~~G~l~~~~~~~ 93 (380)
T TIGR01377 68 WAQLEKEAGTKLHRQTGLLLLGPKEN 93 (380)
T ss_pred HHHHHHHhCCeeEeecCeEEEcCCCc
Confidence 88876554443335678888765543
No 208
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.43 E-value=2.6e-05 Score=86.63 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=31.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCC--CeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDG--CRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g--~~v~~ie~~~~ 281 (673)
++|+|||||++|+++|+.|+ +.| ++|+|+|++..
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~---~~G~~~~V~vlEa~~~ 36 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLH---KKGPDADITLLEASDR 36 (451)
T ss_pred CeEEEECCCHHHHHHHHHHH---HhCCCCCEEEEEcCCC
Confidence 36999999999999999999 766 89999999887
No 209
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.42 E-value=4.2e-05 Score=85.30 Aligned_cols=79 Identities=14% Similarity=0.152 Sum_probs=48.4
Q ss_pred hhHHHHhHHHHHhhhccccc--cccccceeeeeccCCCCCCCceeecC-----CCCCcEEEEEccC-CccccchhHHHHH
Q psy10285 567 YEYFNENVWPHLAHRVKAFE--ELKVSNAWAGYYDFNYFDENAIIGLH-----PSYHNIHFATGFS-GHGIQQAPAIGRA 638 (673)
Q Consensus 567 ~~~~~~~l~~~~~~~~P~l~--~~~i~~~w~G~~~~~t~d~~Piig~~-----~~~~~l~~~~G~~-g~G~~~ap~~g~~ 638 (673)
.+++.+.+++.+.++++.-. .....++|-..+|..+++....+..+ ...+|++++.-+- |.|+--+...|+.
T Consensus 372 ~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~~g~~i~~~i~sg~~ 451 (462)
T TIGR00562 372 ENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSFEGVGIPDCIDQGKA 451 (462)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEeccccCCCcHHHHHHHHHH
Confidence 35666788888888875211 12234667766665444443222211 1246888875443 5688888888999
Q ss_pred HHHHHHc
Q psy10285 639 VSELILD 645 (673)
Q Consensus 639 va~~i~~ 645 (673)
+|+.+..
T Consensus 452 ~a~~~~~ 458 (462)
T TIGR00562 452 AASDVLT 458 (462)
T ss_pred HHHHHHH
Confidence 9988863
No 210
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=98.42 E-value=5.7e-05 Score=82.14 Aligned_cols=34 Identities=38% Similarity=0.598 Sum_probs=30.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCC--CeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDG--CRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g--~~v~~ie~~~~ 281 (673)
.+|+|||||++||++|++|+ +.+ ..|+|+|++..
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~---k~~p~~~i~lfE~~~r 36 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQ---KAGPDVEVTLFEADDR 36 (444)
T ss_pred CeEEEECCcHHHHHHHHHHH---HhCCCCcEEEEecCCC
Confidence 36999999999999999999 666 99999999866
No 211
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.41 E-value=2.5e-07 Score=101.90 Aligned_cols=72 Identities=24% Similarity=0.367 Sum_probs=0.0
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
.++|..+...|.+.+++.|++++ ++.|.++..++ ++|.+|.+.+.+| ..+++||.||.|||-
T Consensus 86 ~~~~~~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~--------------~~i~~V~~~~~~g-~~~i~A~~~IDaTG~-- 148 (428)
T PF12831_consen 86 PFDPEVFKAVLDEMLAEAGVEVLLGTRVVDVIRDG--------------GRITGVIVETKSG-RKEIRAKVFIDATGD-- 148 (428)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccc--------------ccccccccccccc-ccccccccccccccc--
Confidence 34555555666777778899999 56999999876 6899988877666 479999999999994
Q ss_pred HHHHHHcCCC
Q psy10285 482 GQVARMLKIG 491 (673)
Q Consensus 482 ~~l~~~~g~~ 491 (673)
..|+...|..
T Consensus 149 g~l~~~aG~~ 158 (428)
T PF12831_consen 149 GDLAALAGAP 158 (428)
T ss_dssp ----------
T ss_pred cccccccccc
Confidence 4666666543
No 212
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=98.41 E-value=2e-05 Score=85.07 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.|||||||++|+.+|..|+++..++.+|+|||++..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 489999999999999999754334789999998764
No 213
>PRK05868 hypothetical protein; Validated
Probab=98.41 E-value=5.1e-05 Score=82.16 Aligned_cols=34 Identities=24% Similarity=0.503 Sum_probs=32.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
++|+|||||++|+.+|..|+ +.|.+|+|+|+.+.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~---~~G~~v~viE~~~~ 35 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLG---RHGYSVTMVERHPG 35 (372)
T ss_pred CeEEEECCCHHHHHHHHHHH---hCCCCEEEEcCCCC
Confidence 57999999999999999999 89999999999876
No 214
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.40 E-value=1.1e-05 Score=89.84 Aligned_cols=67 Identities=7% Similarity=0.041 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCC--CeeEEecCEEEEcCCCCcHH
Q psy10285 407 WLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKG--ELKTITFAICVIAAGAYSGQ 483 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G--~~~~i~ad~VVlAtG~~s~~ 483 (673)
..++..|.++++++||+|+ +++|++|..+.++ +.++|+++.+...+. .......|.||+|+|+++..
T Consensus 226 eSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~----------~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs~t~n 295 (576)
T PRK13977 226 ESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITG----------GKKTATAIHLTRNGKEETIDLTEDDLVFVTNGSITES 295 (576)
T ss_pred hHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCC----------CceEEEEEEEEeCCceeEEEecCCCEEEEeCCcCccc
Confidence 5788999999999999999 5699999875210 015788877764222 12345779999999988764
No 215
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=98.40 E-value=2e-06 Score=96.74 Aligned_cols=189 Identities=18% Similarity=0.183 Sum_probs=110.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchh-hHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLREN-IEMSLFGAEFL 321 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~-~~~~~~~~~~~ 321 (673)
..+||+|||+|.+|+.+|..++ ..|.+|.+++|... .++.|....|+++........ ..-+ ...++
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa---~~g~~V~l~~K~~~--------~rg~t~~a~gG~~a~~~~~~~~~~ds--~e~~~ 71 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAA---EAGLKVALLSKAPP--------KRGHTVAAQGGINAALGNTVDVEGDS--PELHF 71 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHH---hcCCcEEEEEcccc--------CCCchhhhcccccccccCcccccCCC--HHHHH
Confidence 5689999999999999999999 88999999999888 336666666776654432210 0000 01122
Q ss_pred HHHHhhccccCCCCCCcceeecCeEEEeccchHHH----HHHHHHHHHHcCCcceeeC-HhhHHhhCCCCCcccceeEEe
Q psy10285 322 RNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAAT----LEKNHQLQKELGAKNVLLG-PEQLKAKFPWLNTDDIALACL 396 (673)
Q Consensus 322 ~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----l~~~~~~~~~~g~~~~~l~-~~~~~~~~p~~~~~~~~~g~~ 396 (673)
....+ +.-.+.+++-... -.+.+.++.+.|.+..... .......+...... ..++
T Consensus 72 ~dtvk-----------------g~d~l~dqd~i~~~~~~ap~~v~~Le~~G~~f~r~~~G~~~~r~fgg~~~~---rt~~ 131 (562)
T COG1053 72 YDTVK-----------------GGDGLGDQDAVEAFADEAPEAVDELEKWGVPFSRTEDGRIYQRRFGGHSKP---RTCF 131 (562)
T ss_pred HHHHh-----------------ccCCcCCHHHHHHHHHhhHHHHHHHHHhCCCcccCCCccccccccCCcCCC---ccee
Confidence 22211 1111112221222 2223445556665532221 11111222221111 1111
Q ss_pred ccCCceeeCHHHHHHHHHHHHHH-cCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEE-EcCCCCeeEEecCEE
Q psy10285 397 GLEKEGWFDPWLYLNAVKKKAIS-LGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVV-RDEKGELKTITFAIC 473 (673)
Q Consensus 397 ~~~~~g~i~~~~~~~~l~~~~~~-~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V-~t~~G~~~~i~ad~V 473 (673)
.+......++..|.+.+.+ .++++++ ..|+++..+++ +.|.++.. ...+|+...+.++.|
T Consensus 132 ----~~~~tG~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~v~Gvv~~~~~~g~~~~~~akav 194 (562)
T COG1053 132 ----AADKTGHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG-------------GGVAGVVARDLRTGELYVFRAKAV 194 (562)
T ss_pred ----cCCCCcHHHHHHHHHHHHHhhcchhhhhhhhhhheecCC-------------CcEEEEEEEEecCCcEEEEecCcE
Confidence 1222235788889998888 5677775 58999987764 44777544 345677778899999
Q ss_pred EEcCCCCc
Q psy10285 474 VIAAGAYS 481 (673)
Q Consensus 474 VlAtG~~s 481 (673)
|+|||+..
T Consensus 195 ilaTGG~g 202 (562)
T COG1053 195 ILATGGAG 202 (562)
T ss_pred EEccCCce
Confidence 99999987
No 216
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.40 E-value=5.9e-07 Score=97.29 Aligned_cols=93 Identities=23% Similarity=0.312 Sum_probs=60.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhc-CCCcccccccCchH
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTS-GQPTQESKVSDPHK 178 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~ 178 (673)
.|||+|||||++|+++|++|++. |++|+|||++... .+..++..+.+.+... +.......+...+.
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~---g~~V~lie~~~~~----------~~~~ss~~~~~~~~~~~~~~~~~~~l~~~s~ 69 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARR---GLRVLGLDRFMPP----------HQQGSSHGDTRIIRHAYGEGPAYVPLVLRAQ 69 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHC---CCeEEEEecccCC----------CCCcCcCCcceEEEeeccCCchhhHHHHHHH
Confidence 48999999999999999999999 9999999998640 0112222222222211 11223345667788
Q ss_pred HHHHhhcccccCCccCCCceEEEeeCc
Q psy10285 179 ALKETTNRYSFNDAEAPSGYVDPAKTD 205 (673)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~g~l~v~~~~ 205 (673)
++|+++.+....+.....|.+.+...+
T Consensus 70 ~~~~~l~~~~~~~~~~~~G~l~~~~~~ 96 (376)
T PRK11259 70 ELWRELERESGEPLFVRTGVLNLGPAD 96 (376)
T ss_pred HHHHHHHHHhCCccEEEECCEEEcCCC
Confidence 888887655444333567888776543
No 217
>PLN02612 phytoene desaturase
Probab=98.40 E-value=0.00012 Score=83.47 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
..++..|.+.+++.|++|+. ++|++|+.+++ +++.+ |++.+|+ +++||+||+|+...
T Consensus 308 ~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-------------g~v~~--v~~~~G~--~~~ad~VI~a~p~~ 365 (567)
T PLN02612 308 ERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-------------GTVKH--FLLTNGS--VVEGDVYVSATPVD 365 (567)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC-------------CcEEE--EEECCCc--EEECCEEEECCCHH
Confidence 56889999999889999994 59999998664 44444 5666773 79999999998753
No 218
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.39 E-value=7.3e-07 Score=97.31 Aligned_cols=100 Identities=19% Similarity=0.261 Sum_probs=68.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCc---ccccccCc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPT---QESKVSDP 176 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~---~~~~~~~~ 176 (673)
.+||+|||||++|+++|++|+++ .+|++|+|||+... ++.++++++.+.+....... ....+...
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~-~~g~~V~llE~~~~-----------~~~~aS~~~~g~l~~~~~~~~~~~~~~l~~~ 69 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQER-YPGARIAVLEKESG-----------PARHQTGHNSGVIHAGVYYTPGSLKARFCRR 69 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHh-CCCCeEEEEeCCCc-----------ccccccccCcceEccccccCcHHHHHHHHHH
Confidence 38999999999999999999986 34789999999752 35667777777654321111 12234556
Q ss_pred hHHHHHhhcccccCCccCCCceEEEeeCchhhHHHH
Q psy10285 177 HKALKETTNRYSFNDAEAPSGYVDPAKTDEHYHIKR 212 (673)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~g~l~v~~~~~~~~~~~ 212 (673)
+..+|.++.+..+... ...|.+.++.+++..+.+.
T Consensus 70 ~~~~~~~~~~~~~~~~-~~~G~l~~~~~~~~~~~l~ 104 (393)
T PRK11728 70 GNEATKAFCDQHGIPY-EECGKLLVATSELELERME 104 (393)
T ss_pred HHHHHHHHHHHcCCCc-ccCCEEEEEcCHHHHHHHH
Confidence 6777777654433221 6789999987766655554
No 219
>PRK07190 hypothetical protein; Provisional
Probab=98.38 E-value=7.8e-06 Score=91.50 Aligned_cols=65 Identities=20% Similarity=0.205 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHHHH
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQVA 485 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~l~ 485 (673)
..+...|.+.+++.|++++. ++|++++.+++ ++.+.+.+| .+++|++||.|.|..+ .+-
T Consensus 109 ~~le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~-----------------~v~v~~~~g--~~v~a~~vVgADG~~S-~vR 168 (487)
T PRK07190 109 SYVEKLLDDKLKEAGAAVKRNTSVVNIELNQA-----------------GCLTTLSNG--ERIQSRYVIGADGSRS-FVR 168 (487)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC-----------------eeEEEECCC--cEEEeCEEEECCCCCH-HHH
Confidence 34556677778888999995 59999988775 555666677 3899999999999875 455
Q ss_pred HHcCCC
Q psy10285 486 RMLKIG 491 (673)
Q Consensus 486 ~~~g~~ 491 (673)
+.+|+.
T Consensus 169 ~~lgi~ 174 (487)
T PRK07190 169 NHFNVP 174 (487)
T ss_pred HHcCCC
Confidence 666754
No 220
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.38 E-value=4.8e-06 Score=93.22 Aligned_cols=61 Identities=23% Similarity=0.235 Sum_probs=49.8
Q ss_pred cCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEc
Q psy10285 398 LEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIA 476 (673)
Q Consensus 398 ~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlA 476 (673)
.+.+|+ ..++++|.+.+++.|++|+. .+|++|..+++ + ++.+.+.+| ..+++|.||.+
T Consensus 218 ~p~GG~---~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g--------------~--g~~~~~~~g--~~~~ad~vv~~ 276 (487)
T COG1233 218 YPRGGM---GALVDALAELAREHGGEIRTGAEVSQILVEGG--------------K--GVGVRTSDG--ENIEADAVVSN 276 (487)
T ss_pred eeeCCH---HHHHHHHHHHHHHcCCEEECCCceEEEEEeCC--------------c--ceEEecccc--ceeccceeEec
Confidence 344554 78999999999999999995 59999998873 3 455888887 48999999999
Q ss_pred CCC
Q psy10285 477 AGA 479 (673)
Q Consensus 477 tG~ 479 (673)
...
T Consensus 277 ~~~ 279 (487)
T COG1233 277 ADP 279 (487)
T ss_pred Cch
Confidence 887
No 221
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=98.38 E-value=2.3e-06 Score=101.03 Aligned_cols=36 Identities=31% Similarity=0.613 Sum_probs=32.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...+|+|||||+||+++|+.|++. |++|+|+|+...
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~---G~~VtV~Ek~~~ 573 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA---GHPVTVFEREEN 573 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc---CCeEEEEecccc
Confidence 346899999999999999999999 999999998753
No 222
>KOG0404|consensus
Probab=98.37 E-value=1.3e-06 Score=83.54 Aligned_cols=165 Identities=13% Similarity=0.165 Sum_probs=96.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCcccccccCchHH
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPTQESKVSDPHKA 179 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (673)
...|+|||.|+|+..+|+++++. .+|-+|+|--.. .+..||.+... .-...++.+++..... ...++
T Consensus 8 ~e~v~IiGSGPAa~tAAiYaara---elkPllfEG~~~-------~~i~pGGQLtT-TT~veNfPGFPdgi~G--~~l~d 74 (322)
T KOG0404|consen 8 NENVVIIGSGPAAHTAAIYAARA---ELKPLLFEGMMA-------NGIAPGGQLTT-TTDVENFPGFPDGITG--PELMD 74 (322)
T ss_pred eeeEEEEccCchHHHHHHHHhhc---ccCceEEeeeec-------cCcCCCceeee-eeccccCCCCCccccc--HHHHH
Confidence 35899999999999999999999 899999996432 33345555443 3344455566544321 11222
Q ss_pred HHHhhcccccCC--------ccCCCceEEEeeCchhhH----------HHHHhhhccccccceeccCCCCcccccCCCCC
Q psy10285 180 LKETTNRYSFND--------AEAPSGYVDPAKTDEHYH----------IKRAMRILKLDFQKLWRNVQDPESRYQGNTLF 241 (673)
Q Consensus 180 ~~~~~~~~~~~~--------~~~~~g~l~v~~~~~~~~----------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~ 241 (673)
.++...+-.+.. .+....-+.++.+..... ..+++.-.+-....||..- ...|..|+...+
T Consensus 75 ~mrkqs~r~Gt~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsAkRl~~pg~ge~~fWqrG-iSaCAVCDGaap 153 (322)
T KOG0404|consen 75 KMRKQSERFGTEIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASAKRLHLPGEGEGEFWQRG-ISACAVCDGAAP 153 (322)
T ss_pred HHHHHHHhhcceeeeeehhhccccCCCeEEEecCCceeeeeEEEecccceeeeecCCCCcchHHhcc-cchhhcccCcch
Confidence 222221111110 001111122222211100 0012222222122377654 556777765432
Q ss_pred -CCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 242 -PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 242 -~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
-+++-.+|||+|-++++-|.+|. +-+.+|++|-|+..
T Consensus 154 ifrnk~laVIGGGDsA~EEA~fLt---kyaskVyii~Rrd~ 191 (322)
T KOG0404|consen 154 IFRNKPLAVIGGGDSAMEEALFLT---KYASKVYIIHRRDH 191 (322)
T ss_pred hhcCCeeEEEcCcHHHHHHHHHHH---hhccEEEEEEEhhh
Confidence 37788999999999999999999 89999999999887
No 223
>PLN02487 zeta-carotene desaturase
Probab=98.37 E-value=8.8e-05 Score=83.98 Aligned_cols=63 Identities=16% Similarity=0.105 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 408 LYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 408 ~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
.+...+.+.++++|++|+. +.|.+|+.+.++ ++ .+++.++.+.. +++...+.+|.||+|++.+
T Consensus 296 ~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~--------~g-~~~v~gv~~~~-~~~~~~~~aD~VV~A~p~~ 359 (569)
T PLN02487 296 RLSGPIAKYITDRGGRFHLRWGCREILYDKSP--------DG-ETYVTGLKVSK-ATEKEIVKADAYVAACDVP 359 (569)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEEecCC--------CC-ceeEEEEEEec-CCCceEEECCEEEECCCHH
Confidence 4888999999999999995 599999876420 00 01467755531 2222468999999999976
No 224
>PRK11445 putative oxidoreductase; Provisional
Probab=98.36 E-value=0.00024 Score=76.31 Aligned_cols=67 Identities=25% Similarity=0.100 Sum_probs=46.6
Q ss_pred eCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEc-CCCCeeEEecCEEEEcCCCCc
Q psy10285 404 FDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD-EKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t-~~G~~~~i~ad~VVlAtG~~s 481 (673)
++...+-..|.+. .+.|++++. +.|+.++.+++ ++.|.. .+|+..+++||.||.|+|..+
T Consensus 96 i~R~~~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~-----------------~~~v~~~~~g~~~~i~a~~vV~AdG~~S 157 (351)
T PRK11445 96 IDRHKFDLWLKSL-IPASVEVYHNSLCRKIWREDD-----------------GYHVIFRADGWEQHITARYLVGADGANS 157 (351)
T ss_pred ccHHHHHHHHHHH-HhcCCEEEcCCEEEEEEEcCC-----------------EEEEEEecCCcEEEEEeCEEEECCCCCc
Confidence 5666666666664 467899985 58999987664 455553 566444799999999999887
Q ss_pred HHHHHHcC
Q psy10285 482 GQVARMLK 489 (673)
Q Consensus 482 ~~l~~~~g 489 (673)
. +.+.++
T Consensus 158 ~-vr~~l~ 164 (351)
T PRK11445 158 M-VRRHLY 164 (351)
T ss_pred H-HhHHhc
Confidence 4 444433
No 225
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=98.36 E-value=1.8e-06 Score=102.01 Aligned_cols=35 Identities=26% Similarity=0.375 Sum_probs=32.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
...+|+|||||+||+++|++|++. |++|+|+|+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~---G~~V~v~e~~~ 464 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR---GYDVTVFEALH 464 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC---CCeEEEEecCC
Confidence 347999999999999999999999 99999999864
No 226
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.36 E-value=4.1e-06 Score=91.17 Aligned_cols=67 Identities=27% Similarity=0.160 Sum_probs=50.3
Q ss_pred eeCHHHHHHHHHHHHHHcC-CeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcC-CCCeeEEecCEEEEcCCC
Q psy10285 403 WFDPWLYLNAVKKKAISLG-AEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE-KGELKTITFAICVIAAGA 479 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~G-v~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~-~G~~~~i~ad~VVlAtG~ 479 (673)
.+.-..+.+.|.+.+.+.+ ++++. ++|+.++.+++ .+.++.. +|+ +++||.||-|-|.
T Consensus 100 ~~~~~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-----------------~v~v~l~~dG~--~~~a~llVgADG~ 160 (387)
T COG0654 100 VVPRSDLLNALLEAARALPNVTLRFGAEVEAVEQDGD-----------------GVTVTLSFDGE--TLDADLLVGADGA 160 (387)
T ss_pred EeEhHHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-----------------ceEEEEcCCCc--EEecCEEEECCCC
Confidence 3445678889999998775 89996 59999998874 4445545 884 8999999999998
Q ss_pred CcHHHHHHcC
Q psy10285 480 YSGQVARMLK 489 (673)
Q Consensus 480 ~s~~l~~~~g 489 (673)
+|. +-+.++
T Consensus 161 ~S~-vR~~~~ 169 (387)
T COG0654 161 NSA-VRRAAG 169 (387)
T ss_pred chH-HHHhcC
Confidence 764 334444
No 227
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.33 E-value=5.1e-07 Score=98.14 Aligned_cols=93 Identities=25% Similarity=0.378 Sum_probs=66.0
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCc----ccccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPT----QESKV 173 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~----~~~~~ 173 (673)
++++||||||||++|+++||+|+++ |.+|+|+|++.. +.++++.+.+.+....... ....+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~---G~~V~vie~~~~------------~~g~s~~~~~~~~~~~~~~~~~~~~~~~ 66 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAER---GADVTVLEAGEA------------GGGAAGRNAGGILAPWASPGGELEVRPL 66 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHc---CCEEEEEecCcc------------CCcchhcchhhhccccccCCccchhhhh
Confidence 3468999999999999999999999 899999999874 4456666666665443321 34456
Q ss_pred cCchHHHHHhhcccccCCcc-CCCceEEEeeCc
Q psy10285 174 SDPHKALKETTNRYSFNDAE-APSGYVDPAKTD 205 (673)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~~~~ 205 (673)
...++.+|+.+.+....... ...+.+.+....
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 99 (387)
T COG0665 67 ADLSLALWRELSEELGTGAGLRRRGLLDLAARE 99 (387)
T ss_pred hHHHHHHHHHHHHHhCcchhcchhhhhhhhhcc
Confidence 77788888887654444333 555666555444
No 228
>PRK06753 hypothetical protein; Provisional
Probab=98.32 E-value=8.6e-05 Score=80.34 Aligned_cols=33 Identities=30% Similarity=0.475 Sum_probs=31.6
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+|+|||||++|+.+|..|+ +.|.+|+|+||.+.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~---~~g~~v~v~E~~~~ 34 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQ---EQGHEVKVFEKNES 34 (373)
T ss_pred EEEEECCCHHHHHHHHHHH---hCCCcEEEEecCCc
Confidence 7999999999999999999 89999999999886
No 229
>PLN02852 ferredoxin-NADP+ reductase
Probab=98.31 E-value=5.6e-06 Score=91.69 Aligned_cols=38 Identities=26% Similarity=0.413 Sum_probs=32.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...+|+|||||+||+.+|+.|++.. .|++|+|+|+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~~~-~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLKAH-DGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHhhC-CCCeEEEEecCCC
Confidence 3468999999999999999999721 2899999999874
No 230
>PLN02661 Putative thiazole synthesis
Probab=98.31 E-value=1.5e-05 Score=83.83 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=32.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccC-CCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLD-GCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~-g~~v~~ie~~~~ 281 (673)
.++||+|||+|.+|+.+|+.|+ +. +.+|+++|+...
T Consensus 91 ~~~DVlIVGaG~AGl~AA~~La---~~~g~kV~viEk~~~ 127 (357)
T PLN02661 91 ADTDVVIVGAGSAGLSCAYELS---KNPNVKVAIIEQSVS 127 (357)
T ss_pred ccCCEEEECCHHHHHHHHHHHH---HcCCCeEEEEecCcc
Confidence 5689999999999999999998 54 899999999776
No 231
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.30 E-value=1.4e-06 Score=101.37 Aligned_cols=98 Identities=17% Similarity=0.171 Sum_probs=67.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCc--cccccc---
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPT--QESKVS--- 174 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~--~~~~~~--- 174 (673)
.+||||||||++|+++|++|+++ |++|+|||++.. ++.++|+++.+.+....... ....+.
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~---G~~V~VlE~~~~-----------~~~gaSg~~~G~l~~~~~~~~~~~~~l~~~a 325 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR---GWQVTLYEADEA-----------PAQGASGNRQGALYPLLSKDDNALSRFFRAA 325 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC---CCeEEEEecCCC-----------ccccCCcCcccccccccCCCCCHHHHHHHHH
Confidence 47999999999999999999999 999999999852 36677777777665432111 111111
Q ss_pred -CchHHHHHhhcccccCCcc-CCCceEEEeeCchhhHHHH
Q psy10285 175 -DPHKALKETTNRYSFNDAE-APSGYVDPAKTDEHYHIKR 212 (673)
Q Consensus 175 -~~~~~~~~~~~~~~~~~~~-~~~g~l~v~~~~~~~~~~~ 212 (673)
..+.++|+.+. ..+.+.. ..+|.+.++.+++..+...
T Consensus 326 ~~~a~~~~~~l~-~~~~~~~~~~~G~l~~a~~~~~~~~l~ 364 (662)
T PRK01747 326 FLFARRFYDALP-AAGVAFDHDWCGVLQLAWDEKSAEKIA 364 (662)
T ss_pred HHHHHHHHHHHH-hcCCCCCCCCCceEEeecCchHHHHHH
Confidence 24566676665 2344445 6789999988776655444
No 232
>KOG0405|consensus
Probab=98.30 E-value=5.7e-07 Score=91.28 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=35.4
Q ss_pred CCCCCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 239 TLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 239 ~l~~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+|.+..++++|||+|.++.+.|-.++ ..|.++.++-|...
T Consensus 184 ~Lee~Pkr~vvvGaGYIavE~Agi~~---gLgsethlfiR~~k 223 (478)
T KOG0405|consen 184 DLEEQPKRVVVVGAGYIAVEFAGIFA---GLGSETHLFIRQEK 223 (478)
T ss_pred chhhcCceEEEEccceEEEEhhhHHh---hcCCeeEEEEecch
Confidence 34456789999999999999999999 99999999998876
No 233
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=98.30 E-value=0.00011 Score=81.86 Aligned_cols=62 Identities=19% Similarity=0.172 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCC-eeEEecCEEEEcCCCC
Q psy10285 406 PWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGE-LKTITFAICVIAAGAY 480 (673)
Q Consensus 406 ~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~-~~~i~ad~VVlAtG~~ 480 (673)
+..+++.|.+.+++.|++|+ +++|++|...++ +++.++.+...+|+ ..++.||.||+|+...
T Consensus 212 ~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-------------~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~ 275 (453)
T TIGR02731 212 PERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-------------GSVKHFVLADGEGQRRFEVTADAYVSAMPVD 275 (453)
T ss_pred hHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC-------------CCEEEEEEecCCCCceeEEECCEEEEcCCHH
Confidence 46788999999988999999 569999987654 56667544333221 1268999999999764
No 234
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=98.30 E-value=9e-05 Score=82.79 Aligned_cols=33 Identities=24% Similarity=0.300 Sum_probs=31.1
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+|+|||+|++|+++|+.|+ +.|++|+|+|+.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~---~~G~~v~v~E~~~~ 33 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELV---DAGHEVDIYESRSF 33 (474)
T ss_pred CEEEECCCHHHHHHHHHHH---HCCCcEEEEEecCC
Confidence 4899999999999999999 88999999999887
No 235
>KOG4716|consensus
Probab=98.29 E-value=8.7e-07 Score=89.53 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=33.6
Q ss_pred CCCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 241 FPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 241 ~~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+....+.+|||+|.++++||-+|+ ..|..|++.-|+-.
T Consensus 195 ~~~PGkTLvVGa~YVaLECAgFL~---gfg~~vtVmVRSI~ 232 (503)
T KOG4716|consen 195 PYEPGKTLVVGAGYVALECAGFLK---GFGYDVTVMVRSIL 232 (503)
T ss_pred cCCCCceEEEccceeeeehhhhHh---hcCCCcEEEEEEee
Confidence 344567899999999999999999 99999999998876
No 236
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.29 E-value=1.8e-06 Score=95.78 Aligned_cols=101 Identities=15% Similarity=0.196 Sum_probs=68.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEec-ccccccCcCCCCCCCCCCCccc-------cccchhhcCCCcc-
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR-DFTVNYDLDEDGSNPGDQESSN-------DKDRISTSGQPTQ- 169 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~-~~~~~~~~~~~~~~~~~~~s~~-------~~~~~~~~~~~~~- 169 (673)
..+||||||||++|+++|+.|++. .++.+|+|+|| +. ++.++|.. ..+.+...+.+..
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~-~~~~~V~vlEr~~~------------~a~~sS~~~nNagt~hag~~e~nY~~~~~ 71 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKEL-DPDWNIEVVERLDS------------PAIESSNEWNNAGTGHAALCELNYTVQQP 71 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhC-CCCCeEEEEEcCCC------------cchhcCCCccccCcceeeehhhccCCccc
Confidence 358999999999999999999986 45699999999 53 35555543 3344433333322
Q ss_pred --ccccc---------CchHHHHHhhcc--cccC-Ccc-CCCceEEEeeCchhhHHHH
Q psy10285 170 --ESKVS---------DPHKALKETTNR--YSFN-DAE-APSGYVDPAKTDEHYHIKR 212 (673)
Q Consensus 170 --~~~~~---------~~~~~~~~~~~~--~~~~-~~~-~~~g~l~v~~~~~~~~~~~ 212 (673)
...+. ..++.+|..+.+ .+.. ... .+.+++.+..+++..+.++
T Consensus 72 ~g~~~~~ka~~i~~~~~~s~~f~~~~~~~~~~~~~~~~i~~~~~m~~~~~~~~~~~L~ 129 (497)
T PRK13339 72 DGSIDIEKAKEINEQFEISKQFWGHLVKSGTIGNPREFINPLPHISFVRGKNNVKFLK 129 (497)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHhhhhhcCCCChHhhcccCCeEEEEEChHHHHHHH
Confidence 23334 677788877654 3322 222 6889999998877767776
No 237
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.28 E-value=1.1e-06 Score=84.85 Aligned_cols=35 Identities=34% Similarity=0.775 Sum_probs=30.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||+|||||++||++|++|++. |+||+|+|++..
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~---g~kV~v~E~~~~ 51 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKA---GLKVAVIERKLS 51 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHH---TS-EEEEESSSS
T ss_pred cCCEEEECCChhHHHHHHHHHHC---CCeEEEEecCCC
Confidence 48999999999999999999999 999999999874
No 238
>PRK07588 hypothetical protein; Provisional
Probab=98.28 E-value=7.7e-06 Score=89.18 Aligned_cols=58 Identities=17% Similarity=0.071 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHH
Q psy10285 406 PWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQ 483 (673)
Q Consensus 406 ~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~ 483 (673)
-..+...|.+.+. .|++++. ++|++++.+++ ++.|.+.+|+ ++++|.||.|.|.+|..
T Consensus 102 r~~l~~~L~~~~~-~~v~i~~~~~v~~i~~~~~-----------------~v~v~~~~g~--~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 102 RGDLAAAIYTAID-GQVETIFDDSIATIDEHRD-----------------GVRVTFERGT--PRDFDLVIGADGLHSHV 160 (391)
T ss_pred HHHHHHHHHHhhh-cCeEEEeCCEEeEEEECCC-----------------eEEEEECCCC--EEEeCEEEECCCCCccc
Confidence 3556666666553 4789985 59999988764 6678888884 78999999999987643
No 239
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.27 E-value=7.9e-06 Score=80.22 Aligned_cols=58 Identities=26% Similarity=0.266 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 406 PWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 406 ~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
...+.+.|...+++.++++. +++|+++..+++ +|.|++.++ .+++||+||+|||.++.
T Consensus 81 ~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~-----------------~w~v~~~~~--~~~~a~~VVlAtG~~~~ 139 (203)
T PF13738_consen 81 GEEVLDYLQEYAERFGLEIRFNTRVESVRRDGD-----------------GWTVTTRDG--RTIRADRVVLATGHYSH 139 (203)
T ss_dssp HHHHHHHHHHHHHHTTGGEETS--EEEEEEETT-----------------TEEEEETTS---EEEEEEEEE---SSCS
T ss_pred HHHHHHHHHHHHhhcCcccccCCEEEEEEEecc-----------------EEEEEEEec--ceeeeeeEEEeeeccCC
Confidence 34566667777788899987 569999999875 588999988 58999999999997543
No 240
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.27 E-value=6.8e-06 Score=93.48 Aligned_cols=68 Identities=19% Similarity=0.127 Sum_probs=48.3
Q ss_pred CHHHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEc--CCCCeeEEecCEEEEcCCCC
Q psy10285 405 DPWLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD--EKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 405 ~~~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t--~~G~~~~i~ad~VVlAtG~~ 480 (673)
.-..+.+.|.+.+.+. |++++. ++|++++.+++ ++.|+. .+|+..+++||.||.|.|..
T Consensus 111 ~q~~le~~L~~~~~~~~gv~v~~g~~v~~i~~~~~-----------------~v~v~~~~~~G~~~~i~ad~vVgADG~~ 173 (538)
T PRK06183 111 HQPLLEAVLRAGLARFPHVRVRFGHEVTALTQDDD-----------------GVTVTLTDADGQRETVRARYVVGCDGAN 173 (538)
T ss_pred ChHHHHHHHHHHHHhCCCcEEEcCCEEEEEEEcCC-----------------eEEEEEEcCCCCEEEEEEEEEEecCCCc
Confidence 3345666777777664 899995 59999998775 444443 35655689999999999998
Q ss_pred cHHHHHHcCC
Q psy10285 481 SGQVARMLKI 490 (673)
Q Consensus 481 s~~l~~~~g~ 490 (673)
|. +-+.+++
T Consensus 174 S~-vR~~lg~ 182 (538)
T PRK06183 174 SF-VRRTLGV 182 (538)
T ss_pred hh-HHHHcCC
Confidence 65 4455554
No 241
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.27 E-value=2e-06 Score=82.44 Aligned_cols=35 Identities=31% Similarity=0.773 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..||+|||||++||+|||+||+. |+||+|+|++..
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~---g~kV~i~E~~ls 64 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKA---GLKVAIFERKLS 64 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhC---CceEEEEEeecc
Confidence 36999999999999999999999 999999999874
No 242
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.26 E-value=2.2e-06 Score=95.55 Aligned_cols=100 Identities=11% Similarity=0.157 Sum_probs=63.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCcc--ccccchhhcC-----CCccc---
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESS--NDKDRISTSG-----QPTQE--- 170 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~~-----~~~~~--- 170 (673)
+||||||||++|+++|++|++. .+|++|+|+||+.. ++.++|+ +|++...... .+...
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~-~~g~~V~VlEk~~~-----------~a~~~S~~~~naG~~hag~~e~~y~~~~~~~~ 68 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLREL-EPNWSITLIERLDA-----------VAAESSNPWNNAGTGHSALCELNYTPEMADGS 68 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHh-CCCCeEEEEEcCCc-----------chhhhCCCCCcccccccchhhccCCCccCCCc
Confidence 6999999999999999999995 33799999999653 3555555 3433222111 11100
Q ss_pred c---------cccCchHHHHHhhccc--ccCCcc--CCCceEEEeeCchhhHHHH
Q psy10285 171 S---------KVSDPHKALKETTNRY--SFNDAE--APSGYVDPAKTDEHYHIKR 212 (673)
Q Consensus 171 ~---------~~~~~~~~~~~~~~~~--~~~~~~--~~~g~l~v~~~~~~~~~~~ 212 (673)
. .....+.++|..+.+. ...... .++|+|.++.++++.+.+.
T Consensus 69 ~~l~~a~~~~~~~~~s~~~~~~l~~~g~~~~~~~~~~~~G~L~va~~e~e~~~L~ 123 (483)
T TIGR01320 69 IDIAKAVGINEQFQVSRQFWAHLVEEGILTDPKSFINPVPHVSFVHGSDGVAYLK 123 (483)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcCCCCChhhhccCCCeEEEEEChHHHHHHH
Confidence 1 1123466777666543 111122 4699999998888777665
No 243
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.26 E-value=1.7e-05 Score=85.95 Aligned_cols=67 Identities=10% Similarity=0.112 Sum_probs=49.8
Q ss_pred eeCHHHHHHHHHHHHHHcC-CeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 403 WFDPWLYLNAVKKKAISLG-AEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~G-v~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
.+.-..+.+.|.+.+.+.+ ++++. ++|+++..+++ ++.|.+.++ +++||.||.|.|.+
T Consensus 100 ~v~r~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~-----------------~v~v~~~~~---~~~adlvIgADG~~ 159 (374)
T PRK06617 100 VVKNSDFKKILLSKITNNPLITLIDNNQYQEVISHND-----------------YSIIKFDDK---QIKCNLLIICDGAN 159 (374)
T ss_pred EEEHHHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC-----------------eEEEEEcCC---EEeeCEEEEeCCCC
Confidence 3555788888999888775 88874 58999987764 555666655 89999999999998
Q ss_pred cHHHHHHcCC
Q psy10285 481 SGQVARMLKI 490 (673)
Q Consensus 481 s~~l~~~~g~ 490 (673)
|. +-+.+++
T Consensus 160 S~-vR~~l~~ 168 (374)
T PRK06617 160 SK-VRSHYFA 168 (374)
T ss_pred ch-hHHhcCC
Confidence 74 3344443
No 244
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.25 E-value=2.9e-05 Score=86.88 Aligned_cols=36 Identities=31% Similarity=0.395 Sum_probs=33.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+||+|||+|.+|+.+|..|+ +.|++|+|+|+...
T Consensus 3 ~~ydvvVIG~GpaG~~aA~~aa---~~G~~v~lie~~~~ 38 (472)
T PRK05976 3 KEYDLVIIGGGPGGYVAAIRAG---QLGLKTALVEKGKL 38 (472)
T ss_pred ccccEEEECCCHHHHHHHHHHH---hCCCeEEEEEccCC
Confidence 4689999999999999999999 89999999999755
No 245
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=98.25 E-value=6e-06 Score=91.95 Aligned_cols=36 Identities=25% Similarity=0.378 Sum_probs=32.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..++|+|||||++|+++|+.|++. |++|+|+|+...
T Consensus 139 ~~~~VvIIGgGpaGl~aA~~l~~~---g~~V~lie~~~~ 174 (457)
T PRK11749 139 TGKKVAVIGAGPAGLTAAHRLARK---GYDVTIFEARDK 174 (457)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCC
Confidence 347999999999999999999999 999999998753
No 246
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=98.23 E-value=9.3e-06 Score=87.21 Aligned_cols=35 Identities=29% Similarity=0.354 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+|+|||||++|+++|..|++. |++|+|+|+...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~---g~~v~lie~~~~ 52 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL---GYEVHVYDKLPE 52 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC---CCcEEEEeCCCC
Confidence 35899999999999999999999 999999999764
No 247
>PLN02576 protoporphyrinogen oxidase
Probab=98.23 E-value=0.00019 Score=80.89 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=33.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccC-CCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLD-GCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~-g~~v~~ie~~~~ 281 (673)
..++|+|||||++|+++|++|+ +. |.+|+|+|++..
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~---~~~g~~v~vlEa~~r 47 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALA---SKHGVNVLVTEARDR 47 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHH---HhcCCCEEEEecCCC
Confidence 4578999999999999999999 77 899999999877
No 248
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.20 E-value=0.00027 Score=81.66 Aligned_cols=36 Identities=28% Similarity=0.450 Sum_probs=33.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhcc-CCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVL-DGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~-~g~~v~~ie~~~~ 281 (673)
...||+|||||++|+.+|..|+ + .|.+|.|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~La---r~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLS---AFPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHh---cCCCCcEEEEEcCCC
Confidence 5689999999999999999999 8 4999999999865
No 249
>KOG2404|consensus
Probab=98.18 E-value=1.4e-05 Score=80.47 Aligned_cols=68 Identities=21% Similarity=0.261 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHc------CCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 408 LYLNAVKKKAISL------GAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 408 ~~~~~l~~~~~~~------Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
.++.+|...+++. -++|. +++|++|..++ |+|.++.+...+|+...+.++.||+|+|+|
T Consensus 140 ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~--------------gkVsgVeymd~sgek~~~~~~~VVlatGGf 205 (477)
T KOG2404|consen 140 EIVKALSTRLKKKASENPELVKILLNSKVVDILRNN--------------GKVSGVEYMDASGEKSKIIGDAVVLATGGF 205 (477)
T ss_pred HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC--------------CeEEEEEEEcCCCCccceecCceEEecCCc
Confidence 4555555555432 25666 67999999665 799999888888887789999999999987
Q ss_pred c---HHHHHHcC
Q psy10285 481 S---GQVARMLK 489 (673)
Q Consensus 481 s---~~l~~~~g 489 (673)
+ ..+++..+
T Consensus 206 ~ysd~~lLKey~ 217 (477)
T KOG2404|consen 206 GYSDKELLKEYG 217 (477)
T ss_pred CcChHHHHHHhC
Confidence 5 45665543
No 250
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=98.18 E-value=4.9e-06 Score=93.51 Aligned_cols=36 Identities=25% Similarity=0.347 Sum_probs=31.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
++++|+|||+|.+|+..|..|+ ....+|++.-|+..
T Consensus 182 ~gKrVlVVG~g~Sg~DIa~el~---~~a~~v~~s~R~~~ 217 (531)
T PF00743_consen 182 KGKRVLVVGGGNSGADIAVELS---RVAKKVYLSTRRGA 217 (531)
T ss_dssp TTSEEEEESSSHHHHHHHHHHT---TTSCCEEEECC---
T ss_pred CCCEEEEEeCCHhHHHHHHHHH---HhcCCeEEEEeccc
Confidence 6799999999999999999999 78899999998766
No 251
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.17 E-value=2.8e-05 Score=81.17 Aligned_cols=55 Identities=27% Similarity=0.373 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 408 LYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 408 ~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
.+...+.+.+++.|++++.++|+++...++ .+.|.+.+| .++++|+||+|+|...
T Consensus 58 ~~~~~l~~~~~~~gv~~~~~~v~~v~~~~~-----------------~~~v~~~~~--~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 58 ELMEKMKEQAVKFGAEIIYEEVIKVDLSDR-----------------PFKVKTGDG--KEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEEEEEecCC-----------------eeEEEeCCC--CEEEeCEEEECCCCCc
Confidence 455566777788899988888999887653 566777776 4899999999999853
No 252
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.17 E-value=4.6e-06 Score=93.17 Aligned_cols=102 Identities=12% Similarity=0.140 Sum_probs=62.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCcc--ccccchhhc-----CCCc---
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESS--NDKDRISTS-----GQPT--- 168 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~--~~~~~~~~~-----~~~~--- 168 (673)
.++||||||||++|+++||+|++. .+|++|+||||+.. ++.++|+ +|++..... ..+.
T Consensus 4 ~~~DVvIIGgGIiG~slA~~L~~~-~~g~~V~VlEk~~~-----------~a~~sS~~~~NaG~ghag~~e~~y~~~~~~ 71 (494)
T PRK05257 4 SKTDVVLIGGGIMSATLGTLLKEL-EPEWSITMFERLDG-----------VALESSNGWNNAGTGHSALCELNYTPEKAD 71 (494)
T ss_pred ccceEEEECcHHHHHHHHHHHHHh-CCCCeEEEEEcCCc-----------hhhhcCCCcCccccccccchhhcCCCCCCC
Confidence 458999999999999999999985 23789999999863 2334433 344333221 1110
Q ss_pred ccccc---------cCchHHHHHhhccc--ccCCc-c-CCCceEEEeeCchhhHHHH
Q psy10285 169 QESKV---------SDPHKALKETTNRY--SFNDA-E-APSGYVDPAKTDEHYHIKR 212 (673)
Q Consensus 169 ~~~~~---------~~~~~~~~~~~~~~--~~~~~-~-~~~g~l~v~~~~~~~~~~~ 212 (673)
....+ ...++.+|..+.+. ..... . .++|.+.++.++++.+.++
T Consensus 72 g~~~~~~a~~~~~~~~~s~~~~~~l~~~g~~~~~~~~~~~~G~l~la~~e~e~~~l~ 128 (494)
T PRK05257 72 GSIDISKAVKINEQFQISRQFWAYLVEKGVLPDPRSFINPVPHMSFVWGEDNVAFLK 128 (494)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccCCeEEEEECHHHHHHHH
Confidence 11111 13455666665432 11112 2 5789999998888776665
No 253
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.17 E-value=1.7e-05 Score=86.31 Aligned_cols=64 Identities=19% Similarity=0.105 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHHH
Q psy10285 407 WLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQV 484 (673)
Q Consensus 407 ~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~l 484 (673)
..+...|.+.+.+. |++++. ++|++++.+++ ++.|.+.+| .+++||.||.|.|.+|. +
T Consensus 110 ~~l~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~-----------------~~~v~~~~g--~~~~~~lvIgADG~~S~-v 169 (384)
T PRK08849 110 RLIQLGLWQQFAQYPNLTLMCPEKLADLEFSAE-----------------GNRVTLESG--AEIEAKWVIGADGANSQ-V 169 (384)
T ss_pred HHHHHHHHHHHHhCCCeEEECCCceeEEEEcCC-----------------eEEEEECCC--CEEEeeEEEEecCCCch-h
Confidence 34566677776554 788885 59999988764 566777888 48999999999999874 3
Q ss_pred HHHcCC
Q psy10285 485 ARMLKI 490 (673)
Q Consensus 485 ~~~~g~ 490 (673)
-+.+++
T Consensus 170 R~~~gi 175 (384)
T PRK08849 170 RQLAGI 175 (384)
T ss_pred HHhcCC
Confidence 344454
No 254
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.16 E-value=6e-05 Score=84.20 Aligned_cols=36 Identities=25% Similarity=0.366 Sum_probs=32.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+||+|||+|.+|..+|..++ +.|.+|++||+.+.
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa---~~G~~V~lie~~~~ 38 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAA---DLGLETVCVERYST 38 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHH---HCCCcEEEEecCCc
Confidence 3589999999999999999999 88999999998754
No 255
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.16 E-value=4.1e-05 Score=85.00 Aligned_cols=35 Identities=26% Similarity=0.454 Sum_probs=32.6
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
++||+|||+|++|+++|..++ +.|++|+|+|+...
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa---~~G~~V~lie~~~~ 36 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAA---NHGAKVAIAEEPRV 36 (446)
T ss_pred cccEEEECCCHHHHHHHHHHH---hCCCcEEEEecCcc
Confidence 489999999999999999999 89999999999655
No 256
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=98.16 E-value=1e-05 Score=97.54 Aligned_cols=36 Identities=22% Similarity=0.230 Sum_probs=32.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...+|+|||||+|||++|+.|++. |++|+|+|+...
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~---G~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY---GVDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc---CCcEEEEecCCC
Confidence 347999999999999999999999 999999998753
No 257
>PRK02106 choline dehydrogenase; Validated
Probab=98.16 E-value=0.00014 Score=83.21 Aligned_cols=60 Identities=17% Similarity=0.099 Sum_probs=46.0
Q ss_pred HcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC-cHHHHHHcCCCC
Q psy10285 419 SLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY-SGQVARMLKIGD 492 (673)
Q Consensus 419 ~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~-s~~l~~~~g~~~ 492 (673)
..|++|+ ++.|++|..++ +++++|.+...++....+.++.||+|+|+. +++||-..|+..
T Consensus 213 ~~nl~i~~~a~V~rI~~~~--------------~~a~GV~~~~~~~~~~~~~ak~VILaaGai~TP~LLl~SGIG~ 274 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG--------------KRAVGVEYERGGGRETARARREVILSAGAINSPQLLQLSGIGP 274 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC--------------CeEEEEEEEeCCcEEEEEeeeeEEEccCCCCCHHHHhhcCCCC
Confidence 4579999 56999998874 678897776665544567899999999975 778887777653
No 258
>KOG1399|consensus
Probab=98.15 E-value=6.3e-06 Score=89.93 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=32.8
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.-+|+|||||+|||++|..|.+. |+.|+|+||...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~~~---g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELLRE---GHEVVVFERTDD 40 (448)
T ss_pred CCceEEECcchHHHHHHHHHHHC---CCCceEEEecCC
Confidence 46999999999999999999999 999999999875
No 259
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.15 E-value=3.8e-05 Score=84.21 Aligned_cols=64 Identities=17% Similarity=0.169 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHc-CCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHHH
Q psy10285 407 WLYLNAVKKKAISL-GAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQV 484 (673)
Q Consensus 407 ~~~~~~l~~~~~~~-Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~l 484 (673)
..+...|.+.+.+. |++++. ++|++++.+++ ++.|.+.+|+ +++||.||.|.|..+ .+
T Consensus 111 ~~l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~-----------------~~~v~~~~g~--~~~a~lvIgADG~~S-~v 170 (405)
T PRK08850 111 RVIQLALLEQVQKQDNVTLLMPARCQSIAVGES-----------------EAWLTLDNGQ--ALTAKLVVGADGANS-WL 170 (405)
T ss_pred HHHHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC-----------------eEEEEECCCC--EEEeCEEEEeCCCCC-hh
Confidence 45566777777664 789885 58999987664 5567777884 899999999999876 34
Q ss_pred HHHcCC
Q psy10285 485 ARMLKI 490 (673)
Q Consensus 485 ~~~~g~ 490 (673)
-+.+++
T Consensus 171 R~~~~~ 176 (405)
T PRK08850 171 RRQMDI 176 (405)
T ss_pred HHHcCC
Confidence 455554
No 260
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.14 E-value=6.4e-05 Score=84.64 Aligned_cols=60 Identities=13% Similarity=0.004 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcC-CCCeeEEecCEEEEcCCCC
Q psy10285 407 WLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE-KGELKTITFAICVIAAGAY 480 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~-~G~~~~i~ad~VVlAtG~~ 480 (673)
..+..+|.+.+++.|++|+ +++|++|..++ +++.++.+... +|+..+++||.||.++...
T Consensus 232 ~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~--------------~~~~gv~~~~~~~~~~~~~~ad~VI~~~~~~ 293 (492)
T TIGR02733 232 QTLSDRLVEALKRDGGNLLTGQRVTAIHTKG--------------GRAGWVVVVDSRKQEDLNVKADDVVANLPPQ 293 (492)
T ss_pred HHHHHHHHHHHHhcCCEEeCCceEEEEEEeC--------------CeEEEEEEecCCCCceEEEECCEEEECCCHH
Confidence 6789999999999999999 46999998876 34555443322 1212378999999999874
No 261
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=98.14 E-value=7.8e-06 Score=94.73 Aligned_cols=35 Identities=31% Similarity=0.571 Sum_probs=32.4
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+|+|||||++|+++|+.|++. |++|+|+|+...
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~---G~~Vtv~e~~~~ 227 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRK---GHDVTIFDANEQ 227 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCC
Confidence 47999999999999999999999 999999998763
No 262
>PLN02507 glutathione reductase
Probab=98.12 E-value=5.3e-05 Score=85.15 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=31.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEec
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~ 278 (673)
.++||+|||+|.+|..+|..++ +.|.+|++||+
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~---~~G~~V~liE~ 56 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSA---NFGAKVGICEL 56 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHH---HCCCeEEEEec
Confidence 4689999999999999999999 89999999997
No 263
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=98.11 E-value=1.4e-05 Score=92.87 Aligned_cols=36 Identities=31% Similarity=0.455 Sum_probs=32.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...+|+|||||+|||++|+.|++. |++|+|+|+...
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~---G~~V~V~E~~~~ 361 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN---GVAVTVYDRHPE 361 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC---CCeEEEEecCCC
Confidence 347999999999999999999999 999999998753
No 264
>KOG2960|consensus
Probab=98.10 E-value=1.2e-06 Score=82.87 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=51.7
Q ss_pred CCCCCccchhhHHHHHHhhhhhHhhhhhccCCCcccCCCCCCCccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecc
Q psy10285 56 DPAKTDEHYHIKRAMRILKLDFQKLWRNVQDPESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135 (673)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~ 135 (673)
+-.|+.+. |+++...+ +.|.++|+... ......||||||+|.+||++||.++++ .+.++|+|||..
T Consensus 45 d~s~F~Fa-PIrEStVS-----RaMTrRYf~Dl-------dkyAesDvviVGAGSaGLsAAY~I~~~-rPdlkvaIIE~S 110 (328)
T KOG2960|consen 45 DWSDFKFA-PIRESTVS-----RAMTRRYFKDL-------DKYAESDVVIVGAGSAGLSAAYVIAKN-RPDLKVAIIESS 110 (328)
T ss_pred cccccccc-chhHHHHH-----HHHHHHHHHHH-------HhhhccceEEECCCccccceeeeeecc-CCCceEEEEEee
Confidence 33455666 88887776 66777786543 222347999999999999999999976 458999999987
Q ss_pred cc
Q psy10285 136 FT 137 (673)
Q Consensus 136 ~~ 137 (673)
..
T Consensus 111 Va 112 (328)
T KOG2960|consen 111 VA 112 (328)
T ss_pred ec
Confidence 64
No 265
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.09 E-value=3.8e-05 Score=87.48 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=32.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+||+|||||++|+++|..|+ +.|++|+|+|+...
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~la---r~g~~V~liE~~~~ 38 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAG---RAKLDTLIIEKDDF 38 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHH---HCCCCEEEEecCCC
Confidence 3489999999999999999999 88999999998755
No 266
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.09 E-value=7.8e-06 Score=91.10 Aligned_cols=37 Identities=24% Similarity=0.554 Sum_probs=32.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
.+|||||||||++|+++||+|++.. ++.+|+||||..
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~-~~~~V~VlEk~~ 80 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFT-NLKKIALIERRS 80 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhC-CCCEEEEEecCc
Confidence 4599999999999999999999961 137999999975
No 267
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.09 E-value=4.5e-05 Score=84.61 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=33.6
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..++|+|||||++|+.+|.+|. +.|.+|+++|++..
T Consensus 9 ~~~~VaIIGAG~aGL~aA~~l~---~~G~~v~vfE~~~~ 44 (461)
T PLN02172 9 NSQHVAVIGAGAAGLVAARELR---REGHTVVVFEREKQ 44 (461)
T ss_pred CCCCEEEECCcHHHHHHHHHHH---hcCCeEEEEecCCC
Confidence 4588999999999999999999 88999999999887
No 268
>KOG2665|consensus
Probab=98.08 E-value=7.8e-06 Score=82.14 Aligned_cols=159 Identities=16% Similarity=0.134 Sum_probs=96.9
Q ss_pred CCccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCccc---ccc
Q psy10285 97 FPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPTQE---SKV 173 (673)
Q Consensus 97 ~~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~---~~~ 173 (673)
...+||+||||||++|+++|..|.-+ +++++|+|+|++.. .+-..|+.|++.+......... ..+
T Consensus 45 s~~~~D~VvvGgGiVGlAsARel~lr-hp~l~V~vleke~~-----------la~hqSghNSgViHaGIYY~P~SLKAkl 112 (453)
T KOG2665|consen 45 SKERYDLVVVGGGIVGLASARELSLR-HPSLKVAVLEKEKS-----------LAVHQSGHNSGVIHAGIYYKPGSLKAKL 112 (453)
T ss_pred ccccccEEEECCceeehhhhHHHhhc-CCCceEEeeehhhh-----------hceeecccccceeeeeeeeCCcccchhh
Confidence 34579999999999999999999877 56899999999764 4556677788877654332221 223
Q ss_pred cCchHHHHHhhcccccCCccCCCceEEEeeCchhhHHHHHhhh----ccccccceeccC----CCCcccccCCCCCCCcc
Q psy10285 174 SDPHKALKETTNRYSFNDAEAPSGYVDPAKTDEHYHIKRAMRI----LKLDFQKLWRNV----QDPESRYQGNTLFPTHV 245 (673)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~g~l~v~~~~~~~~~~~~~~~----~g~~~~~~~~~~----~~~~~~~~~~~l~~~~~ 245 (673)
+-..+.+.-+..+...+.. ..+|+|.|+.+.++...+..+.. .+.+.-+..... .+|.|+ +...+.+.
T Consensus 113 CV~G~~LlY~yc~e~~Ipy-Kk~GKLIVAt~~~EiprLd~L~~~g~qN~v~glrmieg~ei~~~EP~cr-gvkAl~sP-- 188 (453)
T KOG2665|consen 113 CVEGRELLYEYCDEKKIPY-KKTGKLIVATESEEIPRLDALMHRGTQNGVPGLRMIEGSEIMEMEPYCR-GVKALLSP-- 188 (453)
T ss_pred hhccHHHHHHHhhhcCCCh-hhcceEEEEeChhhcchHHHHHHhhhhcCCCCeeeeccchhhhcChhhh-hhhhhcCC--
Confidence 4444444333222211111 67999999998887777663322 233332333222 233332 12223222
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEE
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVA 274 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~ 274 (673)
.--||-.|...++.+..+. ..|.++.
T Consensus 189 htGIvD~~~v~ls~~edF~---~~gg~i~ 214 (453)
T KOG2665|consen 189 HTGIVDWGSVTLSFGEDFD---FMGGRIY 214 (453)
T ss_pred CcceeehHHHHHHHHHHHH---Hhccccc
Confidence 3457788888888888876 5554443
No 269
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.08 E-value=5.8e-06 Score=93.88 Aligned_cols=50 Identities=28% Similarity=0.472 Sum_probs=43.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhh
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRIST 163 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~ 163 (673)
..|||||||||++|+++|+.|+++ |++|+|||++.. +.++|+++.+.+..
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~r---G~~V~LlEk~d~------------~~GaS~~~~gllh~ 54 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALR---GLRCILVERHDI------------ATGATGRNHGLLHS 54 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc---CCeEEEEECCCC------------CCCcccccccceec
Confidence 359999999999999999999999 999999999764 66777777777754
No 270
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=98.08 E-value=1.3e-05 Score=86.68 Aligned_cols=157 Identities=21% Similarity=0.333 Sum_probs=97.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCceecccCcchhhHHHHHHHHHHH
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFSLRENIEMSLFGAEFLR 322 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~~~~~ 322 (673)
..+||+|||||.+|+++|...+ +.|.++.++--.... .+.-+-.-+.|++..
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaA---RmG~ktlLlT~~~dt------ig~msCNPaIGG~~K------------------- 54 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAA---RMGAKTLLLTLNLDT------IGEMSCNPAIGGPGK------------------- 54 (621)
T ss_pred CCCceEEECCCccchHHHHhhh---ccCCeEEEEEcCCCc------eeecccccccCCccc-------------------
Confidence 3489999999999999999999 999999999876540 121111112222211
Q ss_pred HHHhhccccCCCCCCcceeecCeEEEeccchHHHHHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCce
Q psy10285 323 NIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEG 402 (673)
Q Consensus 323 ~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g 402 (673)
|.+.-.-+.---.+.+. ..+.++.+++++... -| ++. ..-+
T Consensus 55 ---------------------G~lvrEIDALGG~Mg~~---~D~~~IQ~r~LN~sK----GP---------AVr--a~Ra 95 (621)
T COG0445 55 ---------------------GHLVREIDALGGLMGKA---ADKAGIQFRMLNSSK----GP---------AVR--APRA 95 (621)
T ss_pred ---------------------ceeEEeehhccchHHHh---hhhcCCchhhccCCC----cc---------hhc--chhh
Confidence 11110000000001111 123444545544311 11 222 1234
Q ss_pred eeCHHHHHHHHHHHHHHc-CCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 403 WFDPWLYLNAVKKKAISL-GAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~-Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
++|-..|...+.+.++.. |..++.+.|+++..+++ .+|.| |.|.+| ..+.|+.||++||.|.
T Consensus 96 QaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~-------------~~v~G--V~t~~G--~~~~a~aVVlTTGTFL 158 (621)
T COG0445 96 QADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEG-------------QRVVG--VVTADG--PEFHAKAVVLTTGTFL 158 (621)
T ss_pred hhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCC-------------CeEEE--EEeCCC--CeeecCEEEEeecccc
Confidence 667778888888877655 78888999999988763 35778 889999 5999999999999886
Q ss_pred HH
Q psy10285 482 GQ 483 (673)
Q Consensus 482 ~~ 483 (673)
.-
T Consensus 159 ~G 160 (621)
T COG0445 159 RG 160 (621)
T ss_pred cc
Confidence 54
No 271
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.4e-05 Score=80.41 Aligned_cols=59 Identities=25% Similarity=0.282 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHHcCCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcHHH
Q psy10285 406 PWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQV 484 (673)
Q Consensus 406 ~~~~~~~l~~~~~~~Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~~l 484 (673)
...++..+.+.+...|+++....|.+++..++ .+.|.|.+| +++|+.||+|||.....+
T Consensus 60 g~~L~~~~~~~a~~~~~~~~~~~v~~v~~~~~-----------------~F~v~t~~~---~~~ak~vIiAtG~~~~~~ 118 (305)
T COG0492 60 GPELMEQMKEQAEKFGVEIVEDEVEKVELEGG-----------------PFKVKTDKG---TYEAKAVIIATGAGARKL 118 (305)
T ss_pred hHHHHHHHHHHHhhcCeEEEEEEEEEEeecCc-----------------eEEEEECCC---eEEEeEEEECcCCcccCC
Confidence 46778888888888899999888888887652 466899998 599999999999876544
No 272
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=98.07 E-value=0.00016 Score=80.69 Aligned_cols=34 Identities=38% Similarity=0.509 Sum_probs=31.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
++|+|||+|.+|+.+|..++ +.|.+|+++|+...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~---~~g~~v~~~e~~~~ 35 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAA---QLGADVTVIERDGL 35 (466)
T ss_pred CcEEEECCCHHHHHHHHHHH---hCCCeEEEEEccCC
Confidence 57999999999999999999 88999999999876
No 273
>PRK06116 glutathione reductase; Validated
Probab=98.06 E-value=6.5e-05 Score=83.55 Aligned_cols=35 Identities=29% Similarity=0.500 Sum_probs=32.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+||+|||+|++|+++|..|+ +.|++|+|+|+...
T Consensus 4 ~~DvvVIG~GpaG~~aA~~~a---~~G~~V~liE~~~~ 38 (450)
T PRK06116 4 DYDLIVIGGGSGGIASANRAA---MYGAKVALIEAKRL 38 (450)
T ss_pred CCCEEEECCCHHHHHHHHHHH---HCCCeEEEEeccch
Confidence 589999999999999999999 89999999999755
No 274
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.06 E-value=4.2e-06 Score=94.24 Aligned_cols=51 Identities=27% Similarity=0.430 Sum_probs=44.2
Q ss_pred CCccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchh
Q psy10285 97 FPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRIS 162 (673)
Q Consensus 97 ~~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 162 (673)
|+.+|||||||||++|+++|+.|+++ |++|+|||++.. +.++|+++.+.+.
T Consensus 3 ~~~~~DVvIIGGGi~G~~~A~~la~r---G~~V~LlEk~d~------------~~GtS~~ss~lih 53 (502)
T PRK13369 3 EPETYDLFVIGGGINGAGIARDAAGR---GLKVLLCEKDDL------------AQGTSSRSGKLVH 53 (502)
T ss_pred CCcccCEEEECCCHHHHHHHHHHHhC---CCcEEEEECCCC------------CCCCchhhhhhHH
Confidence 45569999999999999999999999 999999999974 6777777777664
No 275
>PLN02546 glutathione reductase
Probab=98.06 E-value=8.3e-05 Score=84.32 Aligned_cols=33 Identities=27% Similarity=0.383 Sum_probs=31.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEec
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~ 278 (673)
.++||+|||+|..|..+|..++ +.|++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa---~~G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFAS---NFGASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHH---HCCCeEEEEec
Confidence 4589999999999999999999 89999999996
No 276
>PRK07236 hypothetical protein; Provisional
Probab=98.06 E-value=5.2e-05 Score=82.54 Aligned_cols=36 Identities=28% Similarity=0.379 Sum_probs=33.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
...+|+|||||++|+.+|..|+ +.|.+|+|+||.+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~---~~G~~v~v~E~~~~ 40 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLR---RAGWDVDVFERSPT 40 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHH---hCCCCEEEEecCCC
Confidence 4578999999999999999999 89999999999875
No 277
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.04 E-value=7.5e-06 Score=65.27 Aligned_cols=30 Identities=37% Similarity=0.707 Sum_probs=27.7
Q ss_pred EECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 105 IIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 105 iiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
|||||++||++|+.|++. |.+|+|+|+...
T Consensus 1 IiGaG~sGl~aA~~L~~~---g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA---GYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHHHT---TSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHHHC---CCcEEEEecCcc
Confidence 899999999999999999 999999999875
No 278
>KOG2820|consensus
Probab=98.04 E-value=6.3e-06 Score=83.79 Aligned_cols=93 Identities=14% Similarity=0.117 Sum_probs=67.1
Q ss_pred CCccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCcccccccCc
Q psy10285 97 FPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPTQESKVSDP 176 (673)
Q Consensus 97 ~~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~ 176 (673)
+.+..|++|||||+.|+++||+|+++ |.+++++|+.+... ..++|..-.++++..........+...
T Consensus 4 ~~~~~~viiVGAGVfG~stAyeLaK~---g~killLeqf~~ph----------~~GSShg~sRIiR~~Y~e~~Y~~m~~e 70 (399)
T KOG2820|consen 4 MVKSRDVIIVGAGVFGLSTAYELAKR---GDKILLLEQFPLPH----------SRGSSHGISRIIRPAYAEDKYMSMVLE 70 (399)
T ss_pred cccceeEEEEcccccchHHHHHHHhc---CCeEEEEeccCCCc----------ccCcccCcceeechhhhhHHHHHHHHH
Confidence 34568999999999999999999999 99999999987511 233444455666666666666677888
Q ss_pred hHHHHHhhcccccCCccCCCceEEEe
Q psy10285 177 HKALKETTNRYSFNDAEAPSGYVDPA 202 (673)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~g~l~v~ 202 (673)
+.+.|+++.++.+......++.+...
T Consensus 71 a~e~W~~~~~~~g~~~~~~t~~~~~~ 96 (399)
T KOG2820|consen 71 AYEKWRNLPEESGVKLHCGTGLLISG 96 (399)
T ss_pred HHHHHHhChhhhceeecccceeeecC
Confidence 88889888665544433445554443
No 279
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.04 E-value=0.00012 Score=81.73 Aligned_cols=36 Identities=33% Similarity=0.448 Sum_probs=33.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+||+|||+|++|+.+|..|+ +.|++|+++|+...
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la---~~G~~v~liE~~~~ 39 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAA---KLGKRVAVIERYRN 39 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHH---hCCCEEEEEecccc
Confidence 4589999999999999999999 89999999999654
No 280
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=98.04 E-value=3.1e-05 Score=86.64 Aligned_cols=35 Identities=23% Similarity=0.401 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+|+|||||++|+++|..|++. |.+|+|+|+...
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~---g~~V~v~e~~~~ 177 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA---GHTVTVFEREDR 177 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc---CCeEEEEecCCC
Confidence 36999999999999999999999 999999998763
No 281
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=98.03 E-value=2.7e-05 Score=86.73 Aligned_cols=36 Identities=31% Similarity=0.462 Sum_probs=32.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...+|+|||||++|+++|+.|++. |++|+|+|+...
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~---G~~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA---GVQVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc---CCeEEEEecCCC
Confidence 347899999999999999999999 999999998763
No 282
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.03 E-value=5.5e-06 Score=93.29 Aligned_cols=50 Identities=30% Similarity=0.396 Sum_probs=42.3
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchh
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRIS 162 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 162 (673)
...|||||||||++|+++|+.|+++ |++|+|||+++. +.++|+++.+.+.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r---Gl~V~LvEk~d~------------~~GtS~~ss~lih 53 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGR---GLSVLLCEQDDL------------ASATSSASTKLIH 53 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC---CCeEEEEecCCC------------CCCcccccccccc
Confidence 4469999999999999999999999 999999999864 6667766665444
No 283
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.03 E-value=5.2e-05 Score=82.98 Aligned_cols=34 Identities=26% Similarity=0.371 Sum_probs=32.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+|+|||||++|+.+|..|+ +.|.+|+|+||.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~---~~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELA---ARGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHH---hCCCcEEEEecCCc
Confidence 68999999999999999999 89999999999875
No 284
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.03 E-value=0.00011 Score=82.08 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=33.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+||+|||+|++|+.+|..++ +.|++|+|+|+...
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa---~~G~~V~liE~~~~ 38 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAA---QLGLKVAIVEKEKL 38 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHH---HCCCcEEEEecccc
Confidence 4589999999999999999999 88999999998776
No 285
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.02 E-value=9.4e-05 Score=82.17 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=33.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+.+||+|||+|++|+.+|..++ +.|++|+|+|+...
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa---~~G~~V~liE~~~~ 36 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAA---EHGAKALLVEAKKL 36 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHH---HCCCcEEEeccccc
Confidence 3589999999999999999999 89999999999766
No 286
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.01 E-value=5.3e-05 Score=83.92 Aligned_cols=75 Identities=11% Similarity=0.112 Sum_probs=49.9
Q ss_pred eCHHHHHHHHHHHHHHcC---CeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCC
Q psy10285 404 FDPWLYLNAVKKKAISLG---AEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~G---v~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~ 479 (673)
+.-..+...|.+.+.+.+ ++++. ++|++++..... +. ..-.++.|++.+|+ +++||.||-|.|.
T Consensus 114 i~~~~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~--------~~--~~~~~v~v~~~~g~--~i~a~llVgADG~ 181 (437)
T TIGR01989 114 IENDNIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKY--------PN--DNSNWVHITLSDGQ--VLYTKLLIGADGS 181 (437)
T ss_pred EEHHHHHHHHHHHHHhCCCCCeEEecCCeeEEEEecccc--------cc--CCCCceEEEEcCCC--EEEeeEEEEecCC
Confidence 445667788888887764 88885 589999753100 00 01125667778884 8999999999999
Q ss_pred CcHHHHHHcCCC
Q psy10285 480 YSGQVARMLKIG 491 (673)
Q Consensus 480 ~s~~l~~~~g~~ 491 (673)
+|. +-+.+++.
T Consensus 182 ~S~-vR~~~gi~ 192 (437)
T TIGR01989 182 NSN-VRKAANID 192 (437)
T ss_pred CCh-hHHHcCCC
Confidence 874 44555543
No 287
>PRK14694 putative mercuric reductase; Provisional
Probab=98.00 E-value=0.00012 Score=81.82 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=34.0
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
...+||+|||+|.+|+.+|..|+ +.|.+|++||+...
T Consensus 4 ~~~~dviVIGaG~aG~~aA~~l~---~~g~~v~lie~~~~ 40 (468)
T PRK14694 4 DNNLHIAVIGSGGSAMAAALKAT---ERGARVTLIERGTI 40 (468)
T ss_pred CCcCCEEEECCCHHHHHHHHHHH---hCCCcEEEEEcccc
Confidence 35789999999999999999999 88999999999766
No 288
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=97.99 E-value=5.9e-06 Score=89.46 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=37.7
Q ss_pred cEEEECCChHHHHHHHHH--HHhcCCCceEEEEecccc------cccCcCCCCCCC
Q psy10285 102 DILIIGGGAIGSSIAYFI--KEKVLDGCRVAVVDRDFT------VNYDLDEDGSNP 149 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l--~~~~~~g~~v~vie~~~~------~~~~~~~~~~~~ 149 (673)
||||||||+||+++|++| ++. |++|+|||++.. ++||+|......
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~---g~~Vllid~~~~~~~~~~~tW~~~~~~~~~ 53 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARP---GLSVLLIDPKPKPPWPNDRTWCFWEKDLGP 53 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCC---CCEEEEEcCCccccccCCcccccccccccc
Confidence 899999999999999999 666 999999998654 577777766443
No 289
>KOG1336|consensus
Probab=97.98 E-value=0.0001 Score=78.76 Aligned_cols=53 Identities=19% Similarity=0.231 Sum_probs=42.3
Q ss_pred HHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCC
Q psy10285 411 NAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480 (673)
Q Consensus 411 ~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~ 480 (673)
+.+.+.++++|++++. +.+.++..+.+ |++.. |.+.+| .++.||.||+++|.-
T Consensus 259 ~~~~~y~e~kgVk~~~~t~~s~l~~~~~-------------Gev~~--V~l~dg--~~l~adlvv~GiG~~ 312 (478)
T KOG1336|consen 259 QFYEDYYENKGVKFYLGTVVSSLEGNSD-------------GEVSE--VKLKDG--KTLEADLVVVGIGIK 312 (478)
T ss_pred HHHHHHHHhcCeEEEEecceeecccCCC-------------CcEEE--EEeccC--CEeccCeEEEeeccc
Confidence 3356667888999995 58888988776 66666 777888 499999999999974
No 290
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.98 E-value=6.8e-05 Score=82.42 Aligned_cols=58 Identities=16% Similarity=0.065 Sum_probs=43.9
Q ss_pred eCHHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 404 FDPWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
++...+...|.+.+. ++.++ .++|++|..+++ ++.|.+.+|+ ++++|.||.|.|.+|.
T Consensus 102 i~R~~l~~~L~~~~~--~~~v~~~~~v~~i~~~~~-----------------~~~v~~~~g~--~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 102 VHRADFLDALLKHLP--EGIASFGKRATQIEEQAE-----------------EVQVLFTDGT--EYRCDLLIGADGIKSA 160 (414)
T ss_pred CCHHHHHHHHHHhCC--CceEEcCCEEEEEEecCC-----------------cEEEEEcCCC--EEEeeEEEECCCccHH
Confidence 566677777777663 34555 458999987664 5677777884 7999999999999875
No 291
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=97.97 E-value=0.00018 Score=80.59 Aligned_cols=33 Identities=27% Similarity=0.415 Sum_probs=31.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEec
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~ 278 (673)
..+||+|||+|.+|+.+|..++ +.|.+|++||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~---~~g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAA---QLGLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHH---hCCCeEEEEec
Confidence 3589999999999999999999 89999999998
No 292
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.97 E-value=0.00019 Score=80.10 Aligned_cols=34 Identities=35% Similarity=0.426 Sum_probs=31.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 280 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~ 280 (673)
.+||+|||+|++|+.+|..++ +.|++|+|||+..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa---~~G~~V~liE~~~ 36 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAG---QLGLKVACVEGRS 36 (466)
T ss_pred cccEEEECCCHHHHHHHHHHH---hCCCeEEEEecCC
Confidence 489999999999999999999 8999999999743
No 293
>KOG2415|consensus
Probab=97.96 E-value=6.2e-05 Score=78.41 Aligned_cols=76 Identities=18% Similarity=0.232 Sum_probs=57.2
Q ss_pred ceeeCHHHHHHHHHHHHHHcCCeEEEe-ceeEEEecCCccccccCCCCCCccceeeEEEEcCC------CCe-------e
Q psy10285 401 EGWFDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEK------GEL-------K 466 (673)
Q Consensus 401 ~g~i~~~~~~~~l~~~~~~~Gv~i~~~-~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~------G~~-------~ 466 (673)
...+.-.+++..|-+.+++.||+|+.+ .+.++..+++ |.|.| |.|+| |.. .
T Consensus 177 NYvv~L~~~v~wLg~kAEe~GvEiyPg~aaSevly~ed-------------gsVkG--iaT~D~GI~k~G~pKd~FerGm 241 (621)
T KOG2415|consen 177 NYVVSLGQLVRWLGEKAEELGVEIYPGFAASEVLYDED-------------GSVKG--IATNDVGISKDGAPKDTFERGM 241 (621)
T ss_pred cEEEEHHHHHHHHHHHHHhhCceeccccchhheeEcCC-------------CcEee--EeeccccccCCCCccccccccc
Confidence 334556789999999999999999976 7888888877 67777 44432 211 4
Q ss_pred EEecCEEEEcCC---CCcHHHHHHcCCC
Q psy10285 467 TITFAICVIAAG---AYSGQVARMLKIG 491 (673)
Q Consensus 467 ~i~ad~VVlAtG---~~s~~l~~~~g~~ 491 (673)
+++|+..|+|-| .-+.+++.+++++
T Consensus 242 e~hak~TifAEGc~G~Lskqi~kkf~Lr 269 (621)
T KOG2415|consen 242 EFHAKVTIFAEGCHGSLSKQIIKKFDLR 269 (621)
T ss_pred eecceeEEEeccccchhHHHHHHHhCcc
Confidence 799999999877 4477888887765
No 294
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.95 E-value=4e-05 Score=72.13 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=28.5
Q ss_pred EEECCcHHHHHHHHHHHhhc--cCCCeEEEEecCCC
Q psy10285 248 LIIGGGAIGSSIAYFIKEKV--LDGCRVAVVDRDFT 281 (673)
Q Consensus 248 ~iiG~G~~g~~~A~~l~~~~--~~g~~v~~ie~~~~ 281 (673)
+|||+|+.|++++.+|.++. ....+|+|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 69999999999999999432 34789999999665
No 295
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.95 E-value=9.4e-05 Score=80.63 Aligned_cols=35 Identities=20% Similarity=0.419 Sum_probs=32.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+||+|||||++|+.+|..|+ +.|.+|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~---~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLH---KAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHH---HCCCCEEEEECCCC
Confidence 378999999999999999999 89999999999875
No 296
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.94 E-value=8.1e-05 Score=73.76 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=31.5
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+|+|||+|++|++||+.|. ..|.+|+|+||+.-
T Consensus 3 siaIVGaGiAGl~aA~~L~---~aG~~vtV~eKg~G 35 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALR---EAGREVTVFEKGRG 35 (331)
T ss_pred cEEEEccchHHHHHHHHHH---hcCcEEEEEEcCCC
Confidence 5999999999999999999 89999999999886
No 297
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.93 E-value=5.6e-05 Score=87.60 Aligned_cols=36 Identities=28% Similarity=0.444 Sum_probs=33.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...+|+|||||++||++|+.|++. |++|+|+|+...
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~---G~~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA---GVQVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc---CCcEEEEeCCCC
Confidence 357899999999999999999999 999999999864
No 298
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.93 E-value=5.5e-05 Score=84.43 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=30.3
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccC------CCeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLD------GCRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~------g~~v~~ie~~~~ 281 (673)
++|+|||||++|+++|+.|+ +. +.+|+|+|++..
T Consensus 2 ~~v~VIGaGisGL~aA~~L~---~~~~~~~~~~~V~vlEa~~r 41 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLE---KLKKDYNIDLNLILVEKEEY 41 (463)
T ss_pred CeEEEECCCHHHHHHHHHHH---hhhhccCCCccEEEEecCCC
Confidence 46999999999999999998 43 479999999877
No 299
>PRK07538 hypothetical protein; Provisional
Probab=97.90 E-value=0.00014 Score=79.86 Aligned_cols=34 Identities=29% Similarity=0.474 Sum_probs=31.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.||+|||||++|+.+|..|+ +.|.+|+|+||.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~---~~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLH---QRGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHH---hCCCcEEEEEcCCc
Confidence 37999999999999999999 88999999999875
No 300
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.90 E-value=0.00033 Score=78.67 Aligned_cols=62 Identities=23% Similarity=0.280 Sum_probs=45.3
Q ss_pred HcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcC-CCCeeEEecCEEEEcCCC-CcHHHHHHcCCC
Q psy10285 419 SLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE-KGELKTITFAICVIAAGA-YSGQVARMLKIG 491 (673)
Q Consensus 419 ~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~-~G~~~~i~ad~VVlAtG~-~s~~l~~~~g~~ 491 (673)
..+++++ ++.|++|..++++ .++|+++.+.+. +|+..+++|+.||+|+|+ .+.+||-..+..
T Consensus 226 ~~n~~l~~~a~v~~i~~d~~~-----------~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL~S~~~ 290 (544)
T TIGR02462 226 SERFTLLTNHRCTRLVRNETN-----------ESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILVNSGFG 290 (544)
T ss_pred CCCEEEEcCCEEEEEEeCCCC-----------CceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHHhCCCC
Confidence 3458998 5699999887531 036888878765 576678999999999994 477777555543
No 301
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=97.89 E-value=1.1e-05 Score=88.09 Aligned_cols=36 Identities=31% Similarity=0.503 Sum_probs=33.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+.|||||||||+||++||+.|++. |.+|+|+|+...
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~---G~~VlvlEk~~~ 37 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA---GLDVLVLEKGSE 37 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc---CCeEEEEecCCC
Confidence 359999999999999999999999 999999999764
No 302
>PTZ00367 squalene epoxidase; Provisional
Probab=97.88 E-value=0.00019 Score=81.34 Aligned_cols=35 Identities=29% Similarity=0.595 Sum_probs=32.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 280 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~ 280 (673)
..+||+|||||++|+.+|..|+ +.|.+|+|+||.+
T Consensus 32 ~~~dViIVGaGiaGlalA~aLa---r~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALS---KQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHH---hcCCEEEEEcccc
Confidence 4589999999999999999999 8999999999976
No 303
>PRK09897 hypothetical protein; Provisional
Probab=97.88 E-value=9.6e-05 Score=82.95 Aligned_cols=36 Identities=14% Similarity=0.280 Sum_probs=30.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
++|+|||+|..|+++|..|++. ....+|+|+|+...
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~-~~~l~V~lfEp~~~ 37 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQ-QTPLSISIFEQADE 37 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhc-CCCCcEEEEecCCC
Confidence 5799999999999999999821 23468999999765
No 304
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.88 E-value=0.00056 Score=72.85 Aligned_cols=67 Identities=25% Similarity=0.153 Sum_probs=53.4
Q ss_pred eeCHHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 403 WFDPWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 403 ~i~~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
.-.-..++..+.+.+++.|++|+ +++|.+|+..++ .+.+ |.+.+| .++.+|+||+|.|-.+
T Consensus 169 TD~l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~--------------~~~~--v~~~~g--~~i~~~~vvlA~Grsg 230 (486)
T COG2509 169 TDILPKVVKNIREYLESLGGEIRFNTEVEDIEIEDN--------------EVLG--VKLTKG--EEIEADYVVLAPGRSG 230 (486)
T ss_pred ccchHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCC--------------ceEE--EEccCC--cEEecCEEEEccCcch
Confidence 33346788999999999999999 679999998873 3445 778888 4999999999999776
Q ss_pred HHHHHH
Q psy10285 482 GQVARM 487 (673)
Q Consensus 482 ~~l~~~ 487 (673)
...+.+
T Consensus 231 ~dw~~~ 236 (486)
T COG2509 231 RDWFEM 236 (486)
T ss_pred HHHHHH
Confidence 665543
No 305
>PTZ00058 glutathione reductase; Provisional
Probab=97.88 E-value=0.00013 Score=82.76 Aligned_cols=47 Identities=30% Similarity=0.521 Sum_probs=39.9
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCcee
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLR 302 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~ 302 (673)
..+||+|||+|.+|..+|..++ +.|.+|++||+... |.++.+.|++.
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa---~~G~~ValIEk~~~----------GGtCln~GCiP 93 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAA---RNKAKVALVEKDYL----------GGTCVNVGCVP 93 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHH---HcCCeEEEEecccc----------cccccccCCCC
Confidence 5689999999999999999999 89999999999766 44566667653
No 306
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=97.87 E-value=0.00033 Score=78.22 Aligned_cols=34 Identities=32% Similarity=0.555 Sum_probs=31.5
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+||+|||+|++|+.+|..|+ +.|.+|+|||+...
T Consensus 2 yDvvVIG~G~aGl~aA~~la---~~G~~v~lie~~~~ 35 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAA---QLGLKVALVEKEYL 35 (461)
T ss_pred ccEEEECCCHHHHHHHHHHH---hCCCeEEEEecCCC
Confidence 79999999999999999999 88999999999444
No 307
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=97.86 E-value=1.7e-05 Score=80.73 Aligned_cols=35 Identities=31% Similarity=0.777 Sum_probs=33.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.|||+|||||++|+++|+.|++. |++|+||||+..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~---G~~V~vlEk~~~ 55 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKN---GLKVCVLERSLA 55 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCC
Confidence 58999999999999999999999 999999999874
No 308
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=97.86 E-value=1.5e-05 Score=91.79 Aligned_cols=47 Identities=34% Similarity=0.572 Sum_probs=40.8
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccch
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRI 161 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~ 161 (673)
.|||||||||++|+++|++|+++ |++|+|||+++. +.++|+++.+.+
T Consensus 71 ~~DVvVIGGGi~Ga~~A~~lA~r---Gl~V~LvE~~d~------------a~GtSsrss~li 117 (627)
T PLN02464 71 PLDVLVVGGGATGAGVALDAATR---GLRVGLVEREDF------------SSGTSSRSTKLI 117 (627)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC---CCEEEEEecccc------------CCCcccchhhhh
Confidence 49999999999999999999999 999999999874 666777666544
No 309
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.85 E-value=0.0004 Score=76.44 Aligned_cols=59 Identities=17% Similarity=0.214 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCcH
Q psy10285 407 WLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSG 482 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s~ 482 (673)
..+.++|.+.++..|++++ +++|.+|..+++ +++.+ |++.+|+ +++|+.||.....+..
T Consensus 232 g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~-------------g~~~~--V~~~~Ge--~i~a~~VV~~~s~~p~ 291 (443)
T PTZ00363 232 GGLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN-------------GKVCG--VKSEGGE--VAKCKLVICDPSYFPD 291 (443)
T ss_pred HHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCC-------------CeEEE--EEECCCc--EEECCEEEECcccccc
Confidence 5788999999999999998 569999987754 44544 7888884 8999999987766543
No 310
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.85 E-value=0.00014 Score=77.70 Aligned_cols=37 Identities=32% Similarity=0.591 Sum_probs=34.9
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+.+||+|||+|.+||.+|+.|. +.|++|+|+|.++.
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~---kaG~~v~ilEar~r 41 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELK---KAGYQVQILEARDR 41 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHh---hcCcEEEEEeccCC
Confidence 47799999999999999999999 99999999999887
No 311
>PRK06370 mercuric reductase; Validated
Probab=97.84 E-value=0.00035 Score=77.98 Aligned_cols=36 Identities=28% Similarity=0.472 Sum_probs=33.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+||+|||+|++|+.+|..++ +.|++|+|+|+...
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa---~~G~~v~lie~~~~ 39 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAA---GLGMKVALIERGLL 39 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHH---hCCCeEEEEecCcc
Confidence 4589999999999999999999 89999999999866
No 312
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.82 E-value=0.0002 Score=81.80 Aligned_cols=65 Identities=18% Similarity=0.235 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEEecCEEEEcCCCCcHH
Q psy10285 406 PWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTITFAICVIAAGAYSGQ 483 (673)
Q Consensus 406 ~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i~ad~VVlAtG~~s~~ 483 (673)
...++..|.+.+++.|+++++ +.+++|..+++ |+|.|+.+. ..+|+...+.|+.||+|||+++..
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~-------------g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG~~~~ 191 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD-------------GAVVGVIAICIETGETVYIKSKATVLATGGAGRI 191 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC-------------CeEEEEEEEEcCCCcEEEEecCeEEECCCCcccc
Confidence 467889999999989999996 58999988654 789997764 457776789999999999998864
No 313
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=97.81 E-value=0.00039 Score=77.66 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=32.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+||+|||+|++|+.+|..++ +.|++|++||+...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa---~~G~~V~lie~~~~ 38 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAA---QLGLKTAVVEKKYW 38 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHH---hCCCeEEEEecCCC
Confidence 489999999999999999999 88999999999766
No 314
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.80 E-value=0.00058 Score=76.08 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=31.3
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+|+|||+|.+|+.+|..++ +.|.+|++||+...
T Consensus 2 ~vvVIG~G~aG~~aA~~~~---~~g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAA---QNGKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHH---hCCCcEEEEECCcc
Confidence 6999999999999999999 89999999999876
No 315
>PRK13748 putative mercuric reductase; Provisional
Probab=97.80 E-value=0.00022 Score=81.71 Aligned_cols=36 Identities=22% Similarity=0.397 Sum_probs=33.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+||+|||+|.+|+.+|..++ +.|.+|+|||+...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~---~~G~~v~lie~~~~ 132 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAV---EQGARVTLIERGTI 132 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHH---hCCCeEEEEecCcc
Confidence 3589999999999999999999 89999999999865
No 316
>KOG2844|consensus
Probab=97.79 E-value=5.5e-05 Score=83.17 Aligned_cols=106 Identities=16% Similarity=0.236 Sum_probs=75.7
Q ss_pred CCCccccEEEECCChHHHHHHHHHHHhcCCCceEEEE-ecccccccCcCCCCCCCCCCCccccccchhhcCC-Ccccccc
Q psy10285 96 LFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVV-DRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQ-PTQESKV 173 (673)
Q Consensus 96 ~~~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vi-e~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~-~~~~~~~ 173 (673)
..+...|+||||||..|.++||+||++ |.+.+|+ |+... ..+.++..++.+..... +.....+
T Consensus 35 ~~~~~A~vvViggG~~g~~~~yhlak~---g~k~avlle~~~l------------tsgttwhtagl~~~lr~~dv~~qli 99 (856)
T KOG2844|consen 35 PLPSTADVVVIGGGSLGCSTAYHLAKR---GMKGAVLLERSRL------------TSGTTWHTAGLLWQLFPSDVELQLI 99 (856)
T ss_pred cCCCcccEEEEcCCchhHHHHHHHHHc---cccceEEEeeeee------------ccccccccccceeeccCCchhHHHH
Confidence 344568999999999999999999999 9995554 45443 45566666666665222 2222334
Q ss_pred cCchHHHHHhhcccccCCcc-CCCceEEEeeCchhhHHHHHhhh
Q psy10285 174 SDPHKALKETTNRYSFNDAE-APSGYVDPAKTDEHYHIKRAMRI 216 (673)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~-~~~g~l~v~~~~~~~~~~~~~~~ 216 (673)
+...+.+.+.+.+..+.... +++|.+.++.+....+..++|..
T Consensus 100 a~~~~~l~~~leeEtgl~tGwiq~G~~~lAs~~~R~de~kR~~S 143 (856)
T KOG2844|consen 100 AHTSRVLYRELEEETGLHTGWIQNGGIFLASNRQRLDEYKRLMS 143 (856)
T ss_pred HHHHHHHHHHHHHhcCCCcceecCCceEEecCHHHHHHHHHHHH
Confidence 55556667777777777766 89999999999888777765443
No 317
>PRK10262 thioredoxin reductase; Provisional
Probab=97.78 E-value=0.00039 Score=73.64 Aligned_cols=36 Identities=19% Similarity=0.337 Sum_probs=32.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+||+|||+|++|+++|..|+ +.|++|+++|+...
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~---~~g~~~~~ie~~~~ 40 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAA---RANLQPVLITGMEK 40 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHH---HCCCCeEEEEeecC
Confidence 5689999999999999999999 78999999996544
No 318
>PRK10015 oxidoreductase; Provisional
Probab=97.77 E-value=2.3e-05 Score=86.34 Aligned_cols=35 Identities=29% Similarity=0.536 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+|||||||||++|+++|+.|++. |++|+||||...
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~~---G~~VlliEr~~~ 39 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMARA---GLDVLVIERGDS 39 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHhC---CCeEEEEecCCC
Confidence 59999999999999999999999 999999999763
No 319
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=97.76 E-value=3.6e-05 Score=78.62 Aligned_cols=35 Identities=37% Similarity=0.780 Sum_probs=32.8
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||+|||||++|+++|+.|++. |++|+|||+...
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~---G~~V~liEk~~~ 59 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKA---GLKVAVFERKLS 59 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhC---CCeEEEEecCCC
Confidence 48999999999999999999999 999999999864
No 320
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.76 E-value=0.0009 Score=76.72 Aligned_cols=35 Identities=31% Similarity=0.496 Sum_probs=32.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 280 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~ 280 (673)
+..+|+|||||++|+.+|..|+ +.|.+|+|+||.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~---r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAK---KKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHH---hcCCeEEEEeccc
Confidence 5688999999999999999999 8999999999975
No 321
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=97.74 E-value=0.0005 Score=77.90 Aligned_cols=62 Identities=19% Similarity=0.130 Sum_probs=45.8
Q ss_pred HHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCC--CeeEEecCEEEEcCCCC-cHHHHHHcCCC
Q psy10285 416 KAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKG--ELKTITFAICVIAAGAY-SGQVARMLKIG 491 (673)
Q Consensus 416 ~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G--~~~~i~ad~VVlAtG~~-s~~l~~~~g~~ 491 (673)
.++..+.+|.. +.|++|..++ ++++++.+...++ ....+.++.||+|+|+. ++.|+-..++.
T Consensus 212 a~~~~nl~v~t~a~v~ri~~~~--------------~r~~gv~~~~~~~~~~~~~~a~~~viL~AGai~Sp~LL~~Sgig 277 (542)
T COG2303 212 ALKRPNLTLLTGARVRRILLEG--------------DRAVGVEVEIGDGGTIETAVAAREVVLAAGAINSPKLLLLSGIG 277 (542)
T ss_pred HhcCCceEEecCCEEEEEEEEC--------------CeeEEEEEEeCCCCceEEEecCceEEEeccccCCHHHHHhcCCC
Confidence 34455789985 5999999987 6778877776554 24567889999999966 77777666643
No 322
>KOG2614|consensus
Probab=97.73 E-value=0.001 Score=70.21 Aligned_cols=34 Identities=26% Similarity=0.509 Sum_probs=31.9
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+|+|||||++|+.+|..|+ +.|.+|.|+|++..
T Consensus 3 ~~VvIvGgGI~Gla~A~~l~---r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 3 PKVVIVGGGIVGLATALALH---RKGIDVVVLESRED 36 (420)
T ss_pred CcEEEECCcHHHHHHHHHHH---HcCCeEEEEeeccc
Confidence 57999999999999999999 89999999999765
No 323
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.73 E-value=2.9e-05 Score=86.99 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=33.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||||||||+.||+||..||++ |++|+|+||+..
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~---G~~V~VlE~~~~ 37 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARA---GLKVTVLEKNDR 37 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhC---CCEEEEEEecCC
Confidence 48999999999999999999999 999999998875
No 324
>PRK13984 putative oxidoreductase; Provisional
Probab=97.73 E-value=0.00017 Score=83.38 Aligned_cols=36 Identities=31% Similarity=0.508 Sum_probs=32.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...+|+|||+|++|+++|..|++. |++|+|+|+...
T Consensus 282 ~~~~v~IIGaG~aGl~aA~~L~~~---G~~v~vie~~~~ 317 (604)
T PRK13984 282 KNKKVAIVGSGPAGLSAAYFLATM---GYEVTVYESLSK 317 (604)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC---CCeEEEEecCCC
Confidence 346899999999999999999999 999999998763
No 325
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=97.73 E-value=2.9e-05 Score=85.70 Aligned_cols=35 Identities=31% Similarity=0.573 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.|||||||||++|+++|+.|++. |++|+||||...
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~~---G~~V~llEr~~~ 39 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLARE---GAQVLVIERGNS 39 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHhC---CCeEEEEEcCCC
Confidence 49999999999999999999999 999999999753
No 326
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=97.72 E-value=3e-05 Score=82.75 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=30.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.|||+|||||++|+++|+.|++. |++|+|||+...
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~---G~~v~i~E~~~~ 35 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA---GIDVTIIERRPD 35 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT---TCEEEEEESSSS
T ss_pred CceEEEECCCHHHHHHHHHHHhc---ccccccchhccc
Confidence 38999999999999999999999 999999999753
No 327
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=97.72 E-value=3.4e-05 Score=84.00 Aligned_cols=32 Identities=28% Similarity=0.574 Sum_probs=31.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~ 135 (673)
|||+|||||+||+++|+.|++. |++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~---G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA---GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC---CCcEEEEECC
Confidence 7999999999999999999999 9999999997
No 328
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=97.71 E-value=3.6e-05 Score=85.15 Aligned_cols=36 Identities=22% Similarity=0.501 Sum_probs=33.2
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
.+.|||+|||||++|+++|+.|++. |++|+|+|+..
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~~---G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAKG---GIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC---CCcEEEEecCC
Confidence 3569999999999999999999999 99999999864
No 329
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.71 E-value=3e-05 Score=81.38 Aligned_cols=35 Identities=34% Similarity=0.566 Sum_probs=33.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||+|||||+||+.||..++++ |.+|+|||+...
T Consensus 3 ~~dviIIGgGpAGlMaA~~aa~~---G~~V~lid~~~k 37 (408)
T COG2081 3 RFDVIIIGGGPAGLMAAISAAKA---GRRVLLIDKGPK 37 (408)
T ss_pred cceEEEECCCHHHHHHHHHHhhc---CCEEEEEecCcc
Confidence 58999999999999999999999 999999999875
No 330
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.70 E-value=3.6e-05 Score=84.58 Aligned_cols=37 Identities=30% Similarity=0.588 Sum_probs=33.9
Q ss_pred CCccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 97 FPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 97 ~~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
++..|||+|||||++|+++|..|++. |++|+|+|+..
T Consensus 15 ~~~~~dV~IvGaG~aGl~~A~~L~~~---G~~v~v~E~~~ 51 (415)
T PRK07364 15 RSLTYDVAIVGGGIVGLTLAAALKDS---GLRIALIEAQP 51 (415)
T ss_pred CccccCEEEECcCHHHHHHHHHHhcC---CCEEEEEecCC
Confidence 34469999999999999999999999 99999999975
No 331
>PRK14727 putative mercuric reductase; Provisional
Probab=97.70 E-value=0.0011 Score=74.19 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=33.6
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
...+||+|||+|.+|+.+|..|+ +.|.+|+++|+...
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~---~~g~~v~~ie~~~~ 50 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAA---EHGARVTIIEGADV 50 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHH---hCCCeEEEEEccCc
Confidence 35689999999999999999999 89999999999744
No 332
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.69 E-value=0.0012 Score=73.88 Aligned_cols=33 Identities=30% Similarity=0.415 Sum_probs=30.9
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~ 279 (673)
.+||+|||+|.+|..+|..++ +.|.+|++||+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa---~~G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAA---DYGAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHH---HCCCeEEEEecc
Confidence 379999999999999999999 889999999975
No 333
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=97.69 E-value=3.7e-05 Score=79.94 Aligned_cols=34 Identities=32% Similarity=0.675 Sum_probs=32.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
|||+|||||++|+++|+.|++. |.+|+|||++..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~---g~~v~vie~~~~ 34 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK---GLRVLLLEKKSF 34 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC---CCeEEEEeccCC
Confidence 7999999999999999999999 999999999864
No 334
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.68 E-value=0.0005 Score=77.81 Aligned_cols=56 Identities=11% Similarity=0.069 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
..+...+.+.+++.|++++. ++|+++...++ .+.|.+.+|. ++.+|.||+|||...
T Consensus 266 ~~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~~-----------------~~~V~~~~g~--~i~a~~vViAtG~~~ 322 (517)
T PRK15317 266 PKLAAALEEHVKEYDVDIMNLQRASKLEPAAG-----------------LIEVELANGA--VLKAKTVILATGARW 322 (517)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCC-----------------eEEEEECCCC--EEEcCEEEECCCCCc
Confidence 46677788888888999985 58999987653 5567777773 799999999999854
No 335
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=97.68 E-value=0.00069 Score=75.66 Aligned_cols=34 Identities=35% Similarity=0.392 Sum_probs=32.1
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+||+|||+|++|+.+|..++ +.|++|+|+|+...
T Consensus 1 yDvvVIGaGpaG~~aA~~aa---~~g~~v~lie~~~~ 34 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAA---ELGASVAMVERGPL 34 (463)
T ss_pred CCEEEECCCHHHHHHHHHHH---HCCCeEEEEeCCcc
Confidence 58999999999999999999 89999999999876
No 336
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.67 E-value=0.0012 Score=72.72 Aligned_cols=47 Identities=30% Similarity=0.432 Sum_probs=40.4
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCC-CCCCCcccccccccccccCcee
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF-TVNYDLDEYARASTTLSVGGLR 302 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~-~~~~~~~~~~~~st~~~~g~i~ 302 (673)
..+|++|||+|.+|..+|..++ +.|.+|.++|+.. . |.++.+.|++.
T Consensus 3 ~~yDvvVIG~GpaG~~aA~raa---~~G~kvalvE~~~~l----------GGtCln~GCIP 50 (454)
T COG1249 3 KEYDVVVIGAGPAGYVAAIRAA---QLGLKVALVEKGERL----------GGTCLNVGCIP 50 (454)
T ss_pred ccccEEEECCCHHHHHHHHHHH---hCCCCEEEEeecCCc----------CceEEeeCccc
Confidence 4689999999999999999999 8898899999994 5 45677777764
No 337
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.67 E-value=0.00055 Score=75.83 Aligned_cols=35 Identities=29% Similarity=0.469 Sum_probs=32.6
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+||+|||+|++|+++|..|+ +.|++|+|+|+...
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~---~~g~~V~liE~~~~ 37 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLA---SAGKKVALVEESKA 37 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHH---hCCCEEEEEecCCc
Confidence 589999999999999999999 89999999999863
No 338
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=97.67 E-value=0.00039 Score=77.12 Aligned_cols=35 Identities=29% Similarity=0.472 Sum_probs=32.4
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.+||+|||||++|+.+|..|+ +.|++|+|||+.+.
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la---~~g~~V~lie~~~~ 37 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLA---KAGWRVALIEQSNA 37 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHH---HCCCeEEEEcCCCC
Confidence 489999999999999999999 88999999999754
No 339
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=97.67 E-value=4.3e-05 Score=83.11 Aligned_cols=36 Identities=31% Similarity=0.649 Sum_probs=33.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+.+||+|||||++|+++|+.|++. |.+|+|+|++..
T Consensus 4 ~~~dv~IvGgG~aGl~~A~~L~~~---G~~v~v~E~~~~ 39 (388)
T PRK07608 4 MKFDVVVVGGGLVGASLALALAQS---GLRVALLAPRAP 39 (388)
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC---CCeEEEEecCCC
Confidence 458999999999999999999999 999999999863
No 340
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.66 E-value=5.2e-05 Score=81.88 Aligned_cols=34 Identities=29% Similarity=0.518 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
||+|||||+||+++|+.|++. .+|++|+|+|+..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~-~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA-RPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc-CCCCeEEEEeCCC
Confidence 899999999999999999985 3489999999975
No 341
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.66 E-value=0.00031 Score=79.11 Aligned_cols=69 Identities=23% Similarity=0.217 Sum_probs=45.8
Q ss_pred eCHHHHHHHHHHHHHHcCC--eEE-EeceeEEEecCCccccccCCCCCCccceeeEEEEcC-CCCeeEEecCEEEEcCCC
Q psy10285 404 FDPWLYLNAVKKKAISLGA--EYV-RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE-KGELKTITFAICVIAAGA 479 (673)
Q Consensus 404 i~~~~~~~~l~~~~~~~Gv--~i~-~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~-~G~~~~i~ad~VVlAtG~ 479 (673)
....++.+.|...++.-+. .|. +++|++++..++. ..-..|.|.+. +|+..+-.+|.||+|+|.
T Consensus 81 ~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~------------~~~~~W~V~~~~~g~~~~~~fD~VvvatG~ 148 (531)
T PF00743_consen 81 PSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDF------------SATGKWEVTTENDGKEETEEFDAVVVATGH 148 (531)
T ss_dssp EBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTT------------T-ETEEEEEETTTTEEEEEEECEEEEEE-S
T ss_pred CCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeecccc------------CCCceEEEEeecCCeEEEEEeCeEEEcCCC
Confidence 4456777777778877775 355 6799999876530 11225888775 444446678999999998
Q ss_pred CcHHH
Q psy10285 480 YSGQV 484 (673)
Q Consensus 480 ~s~~l 484 (673)
++..-
T Consensus 149 ~~~P~ 153 (531)
T PF00743_consen 149 FSKPN 153 (531)
T ss_dssp SSCES
T ss_pred cCCCC
Confidence 76443
No 342
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.65 E-value=3.9e-05 Score=83.41 Aligned_cols=34 Identities=47% Similarity=0.702 Sum_probs=26.8
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
|||+|||||+|||.||+.|++. |++|+|+||+..
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~---g~~V~vlE~~~~ 34 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK---GARVLVLERNKR 34 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT---T--EEEE-SSSS
T ss_pred CcEEEECCCHHHHHHHHHHHhC---CCCEEEEeCCcc
Confidence 8999999999999999999999 999999999875
No 343
>PLN02785 Protein HOTHEAD
Probab=97.65 E-value=0.00081 Score=76.81 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=31.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+|++|||+|.+|+.+|..|+ . ..+|+|||++..
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls---~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLS---Q-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHh---c-CCcEEEEecCCC
Confidence 4599999999999999999999 5 589999999863
No 344
>PLN02463 lycopene beta cyclase
Probab=97.65 E-value=4.9e-05 Score=83.85 Aligned_cols=35 Identities=31% Similarity=0.587 Sum_probs=32.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..|||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~~---Gl~V~liE~~~ 61 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSEA---GLSVCCIDPSP 61 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHHC---CCeEEEeccCc
Confidence 358999999999999999999999 99999999865
No 345
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.65 E-value=0.00095 Score=67.94 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=33.3
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
...||+|||+|.+|+.+|..|+ ..|++|+|+|+...
T Consensus 4 ~~~dvivvgaglaglvaa~elA---~aG~~V~ildQEge 39 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELA---DAGKRVLILDQEGE 39 (552)
T ss_pred ccccEEEECccHHHHHHHHHHH---hcCceEEEEccccc
Confidence 4589999999999999999999 99999999999765
No 346
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=97.65 E-value=4.7e-05 Score=85.08 Aligned_cols=36 Identities=31% Similarity=0.511 Sum_probs=33.6
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
+.++||||||+|++|+++|+.|++. |.+|+||||..
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~---G~~V~vlEk~~ 37 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREA---GASVLLLEAAP 37 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 4568999999999999999999999 99999999985
No 347
>PLN02676 polyamine oxidase
Probab=97.64 E-value=0.00062 Score=76.26 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=32.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCC-eEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGC-RVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~-~v~~ie~~~~ 281 (673)
..++|+|||+|++|+.+|..|+ +.|. +|+|+|++..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~---~~g~~~v~vlE~~~~ 61 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLS---EAGIEDILILEATDR 61 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHH---HcCCCcEEEecCCCC
Confidence 5678999999999999999999 7887 6999999887
No 348
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.64 E-value=4.6e-05 Score=82.97 Aligned_cols=35 Identities=37% Similarity=0.591 Sum_probs=32.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..|||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~~---G~~v~liE~~~ 40 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALARA---GASVALVAPEP 40 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC---CCeEEEEeCCC
Confidence 458999999999999999999999 99999999975
No 349
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.63 E-value=6.3e-05 Score=82.97 Aligned_cols=54 Identities=28% Similarity=0.399 Sum_probs=46.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCC
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQP 167 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 167 (673)
..+||+|||||+.|+.+|+.++.+ |++|+|+|+++. +.+.|+++.+.++.+.+.
T Consensus 11 ~~~DviVIGGGitG~GiArDaA~R---Gl~v~LvE~~D~------------AsGTSsrstkLiHGGlRY 64 (532)
T COG0578 11 EEFDVIVIGGGITGAGIARDAAGR---GLKVALVEKGDL------------ASGTSSRSTKLIHGGLRY 64 (532)
T ss_pred cCCCEEEECCchhhHHHHHHHHhC---CCeEEEEecCcc------------cCcccCccccCccchhhh
Confidence 569999999999999999999999 999999999985 777888777777644333
No 350
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.63 E-value=4.2e-05 Score=83.78 Aligned_cols=34 Identities=32% Similarity=0.619 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
+|||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~---G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS---GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC---CCEEEEEcCCC
Confidence 48999999999999999999999 99999999875
No 351
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.63 E-value=0.0006 Score=77.09 Aligned_cols=56 Identities=14% Similarity=0.113 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCCCc
Q psy10285 407 WLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481 (673)
Q Consensus 407 ~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~~s 481 (673)
..+...+.+.+++.|++++. ++|+++...++ .+.|.+.+|. .+.+|.+|+|||...
T Consensus 267 ~~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~~-----------------~~~v~~~~g~--~i~~d~lIlAtGa~~ 323 (515)
T TIGR03140 267 SQLAANLEEHIKQYPIDLMENQRAKKIETEDG-----------------LIVVTLESGE--VLKAKSVIVATGARW 323 (515)
T ss_pred HHHHHHHHHHHHHhCCeEEcCCEEEEEEecCC-----------------eEEEEECCCC--EEEeCEEEECCCCCc
Confidence 45666777888888999985 58999987653 4557777773 799999999999863
No 352
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=97.62 E-value=6.9e-05 Score=59.73 Aligned_cols=30 Identities=37% Similarity=0.671 Sum_probs=27.6
Q ss_pred EECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 249 IIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 249 iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
|||+|++|+.+|+.|+ +.+.+|+|+|+...
T Consensus 1 IiGaG~sGl~aA~~L~---~~g~~v~v~E~~~~ 30 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLA---KAGYRVTVFEKNDR 30 (68)
T ss_dssp EES-SHHHHHHHHHHH---HTTSEEEEEESSSS
T ss_pred CEeeCHHHHHHHHHHH---HCCCcEEEEecCcc
Confidence 8999999999999999 77999999999887
No 353
>PRK09126 hypothetical protein; Provisional
Probab=97.62 E-value=5e-05 Score=82.77 Aligned_cols=34 Identities=32% Similarity=0.621 Sum_probs=32.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
++||+|||||++|+++|+.|++. |++|+|+|+..
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~~---G~~v~v~E~~~ 36 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAGS---GLKVTLIERQP 36 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHhC---CCcEEEEeCCC
Confidence 58999999999999999999999 99999999985
No 354
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=97.61 E-value=0.0011 Score=73.87 Aligned_cols=36 Identities=25% Similarity=0.380 Sum_probs=32.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..+||+|||+|++|+.+|..|+ +.|++|+|||+...
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~---~~g~~v~lie~~~~ 37 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAA---KLGKKVALIEKGPL 37 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHH---HCCCeEEEEeCCcc
Confidence 3489999999999999999999 88999999999544
No 355
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=97.61 E-value=5.4e-05 Score=82.60 Aligned_cols=35 Identities=31% Similarity=0.589 Sum_probs=32.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..+||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~---G~~v~liE~~~ 39 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADA---GLSVALVEGRE 39 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcC---CCEEEEEeCCC
Confidence 358999999999999999999999 99999999975
No 356
>PRK07208 hypothetical protein; Provisional
Probab=97.61 E-value=8.6e-05 Score=83.26 Aligned_cols=37 Identities=30% Similarity=0.538 Sum_probs=33.6
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
....||||||||++||++|+.|+++ |++|+|+|+...
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~---g~~v~v~E~~~~ 38 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR---GYPVTVLEADPV 38 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC---CCcEEEEecCCC
Confidence 3457999999999999999999999 999999998764
No 357
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.60 E-value=0.0014 Score=69.06 Aligned_cols=41 Identities=22% Similarity=0.401 Sum_probs=35.1
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccccccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNY 140 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~~ 140 (673)
...+|+|.||-|++-|+.|..|.... +++++.+||.+.+.|
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~~--~~~~lFLerkp~F~W 43 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEHS--GLKSLFLERKPDFSW 43 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhcccc--CcceEEEecCCCCCc
Confidence 34589999999999999999999984 589999999887443
No 358
>PRK08013 oxidoreductase; Provisional
Probab=97.60 E-value=5.7e-05 Score=82.67 Aligned_cols=34 Identities=38% Similarity=0.706 Sum_probs=32.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
++||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~~---G~~v~viE~~~ 36 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQGS---GLRVAVLEQRV 36 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhhC---CCEEEEEeCCC
Confidence 48999999999999999999999 99999999975
No 359
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=97.60 E-value=6e-05 Score=82.05 Aligned_cols=33 Identities=33% Similarity=0.600 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
||||||||++|+++|+.|++. |++|+|||+...
T Consensus 1 DviIiGaG~AGl~~A~~la~~---g~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP---GLRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC---CCeEEEEccCCC
Confidence 899999999999999999998 999999998753
No 360
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=97.59 E-value=6.3e-05 Score=80.76 Aligned_cols=40 Identities=28% Similarity=0.380 Sum_probs=34.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc-cccCcC
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT-VNYDLD 143 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~-~~~~~~ 143 (673)
+||+|||||++|+++|+.|++. |.+|+|||++.. ..+|+|
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~---G~~V~viEk~~~iGG~~~~ 42 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL---NKRVLVVEKRNHIGGNCYD 42 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC---CCeEEEEecCCCCCCceee
Confidence 7999999999999999999998 999999998653 334444
No 361
>PRK06185 hypothetical protein; Provisional
Probab=97.59 E-value=6.1e-05 Score=82.59 Aligned_cols=35 Identities=26% Similarity=0.559 Sum_probs=32.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..+||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~~---G~~v~liE~~~ 39 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLARA---GVDVTVLEKHA 39 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC---CCcEEEEecCC
Confidence 469999999999999999999999 99999999874
No 362
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=97.58 E-value=9.3e-05 Score=83.42 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=33.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.++||||||+|.+|+++|+.+++. |.+|+||||...
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~---Ga~VivlEK~~~ 95 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDA---GMNPVILEKMPV 95 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC---CCCEEEEECCCC
Confidence 468999999999999999999999 999999999864
No 363
>PRK07121 hypothetical protein; Validated
Probab=97.57 E-value=0.0001 Score=82.88 Aligned_cols=36 Identities=31% Similarity=0.482 Sum_probs=33.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+||||||+|.+|+++|+.+++. |.+|+||||...
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~---G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAA---GARVLVLERAAG 54 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHC---CCeEEEEeCCCC
Confidence 358999999999999999999999 999999999864
No 364
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.57 E-value=0.0023 Score=71.70 Aligned_cols=34 Identities=29% Similarity=0.410 Sum_probs=31.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccC-CCeEEEEecC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLD-GCRVAVVDRD 279 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~-g~~v~~ie~~ 279 (673)
+.+||+|||+|..|..+|..++ +. |.+|+|||+.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa---~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAA---TLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHH---HhcCCEEEEEecc
Confidence 4689999999999999999999 75 8999999984
No 365
>KOG1399|consensus
Probab=97.57 E-value=0.00068 Score=74.25 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=33.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..++|+|||||.+||.+|..|. +.|.+|+++||...
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~---~~g~~v~vfEr~~~ 40 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELL---REGHEVVVFERTDD 40 (448)
T ss_pred CCCceEEECcchHHHHHHHHHH---HCCCCceEEEecCC
Confidence 4578999999999999999999 88999999999887
No 366
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=97.57 E-value=6.3e-05 Score=81.96 Aligned_cols=35 Identities=34% Similarity=0.634 Sum_probs=32.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
.+|||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~~---G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQH---GFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhcC---CCEEEEEcCCC
Confidence 359999999999999999999999 99999999874
No 367
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=97.56 E-value=0.00079 Score=76.90 Aligned_cols=64 Identities=16% Similarity=0.245 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEE-cCCCCeeEEecCEEEEcCCCCcHH
Q psy10285 406 PWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVR-DEKGELKTITFAICVIAAGAYSGQ 483 (673)
Q Consensus 406 ~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~-t~~G~~~~i~ad~VVlAtG~~s~~ 483 (673)
...++..|.+.+++.|++|++ +.|++|..++ |+|.|+.+. ..+|+...+.|+.||+|||+++..
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~--------------g~v~Ga~~~~~~~g~~~~i~AkaVILATGG~~~~ 183 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED--------------GECRGVIAYCLETGEIHRFRAKAVVLATGGYGRI 183 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC--------------CEEEEEEEEEcCCCcEEEEEeCeEEECCCCcccc
Confidence 467889999999999999995 5999998764 789997664 456766789999999999998764
No 368
>KOG1298|consensus
Probab=97.55 E-value=7.5e-05 Score=77.25 Aligned_cols=36 Identities=39% Similarity=0.789 Sum_probs=33.6
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
...+||||||||.+|.+.|+.|++. |.||+||||+.
T Consensus 43 ~~~~DvIIVGAGV~GsaLa~~L~kd---GRrVhVIERDl 78 (509)
T KOG1298|consen 43 DGAADVIIVGAGVAGSALAYALAKD---GRRVHVIERDL 78 (509)
T ss_pred CCcccEEEECCcchHHHHHHHHhhC---CcEEEEEeccc
Confidence 3468999999999999999999999 99999999986
No 369
>PLN02568 polyamine oxidase
Probab=97.54 E-value=0.0017 Score=73.55 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=32.2
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCC-----CeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDG-----CRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g-----~~v~~ie~~~~ 281 (673)
+..+|+|||+|++|+++|..|+ +.| .+|+|+|++..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~---~~g~~~~~~~v~v~E~~~~ 44 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLY---TSSAANDMFELTVVEGGDR 44 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHH---hcccccCCceEEEEeCCCC
Confidence 4578999999999999999999 555 89999999876
No 370
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.00067 Score=74.98 Aligned_cols=37 Identities=32% Similarity=0.556 Sum_probs=33.5
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccCCCe-EEEEecCCC
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCR-VAVVDRDFT 281 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~-v~~ie~~~~ 281 (673)
...++|+|||||.+|+.+|+.|. +.|.. ++|+||+..
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~---~~g~~~~~i~Ek~~~ 43 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALK---QAGVPDFVIFEKRDD 43 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHH---HcCCCcEEEEEccCC
Confidence 35689999999999999999999 77777 999999877
No 371
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=97.53 E-value=8.4e-05 Score=81.69 Aligned_cols=40 Identities=18% Similarity=0.297 Sum_probs=36.1
Q ss_pred CCccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccccc
Q psy10285 97 FPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVN 139 (673)
Q Consensus 97 ~~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~~~ 139 (673)
|+..|||||||+|.+|+.+|..|++. |+||+++|++..|.
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~---GkkVLhlD~n~~yG 40 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVN---GKKVLHMDRNPYYG 40 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhC---CCEEEEecCCCCcC
Confidence 34569999999999999999999999 99999999998644
No 372
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=97.53 E-value=7.9e-05 Score=81.68 Aligned_cols=33 Identities=42% Similarity=0.746 Sum_probs=31.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~ 135 (673)
.+||+|||||++|+++|+.|++. |++|+|||+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~~---G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKES---DLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHhC---CCEEEEEcCC
Confidence 48999999999999999999999 9999999986
No 373
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=97.53 E-value=8.1e-05 Score=80.99 Aligned_cols=34 Identities=32% Similarity=0.574 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
.+||+|||||++|+++|+.|++. |++|+|+|+..
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~---G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ---GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC---CCcEEEEcCCC
Confidence 38999999999999999999999 99999999864
No 374
>PRK07846 mycothione reductase; Reviewed
Probab=97.52 E-value=0.0014 Score=72.77 Aligned_cols=43 Identities=30% Similarity=0.449 Sum_probs=34.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCcee
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLR 302 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~ 302 (673)
+||+|||+|..|..+|.. ..|.+|++||+... |.++.+.|++.
T Consensus 2 yD~vVIG~G~~g~~aa~~-----~~G~~V~lie~~~~----------GGtC~n~GCiP 44 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER-----FADKRIAIVEKGTF----------GGTCLNVGCIP 44 (451)
T ss_pred CCEEEECCCHHHHHHHHH-----HCCCeEEEEeCCCC----------CCcccCcCcch
Confidence 799999999999988753 35999999999776 44566666654
No 375
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.52 E-value=0.00011 Score=84.12 Aligned_cols=35 Identities=29% Similarity=0.532 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+|+|||+|++||++|+.|++. |.+|+|+|+...
T Consensus 137 g~~V~VIGaGpaGL~aA~~l~~~---G~~V~v~e~~~~ 171 (564)
T PRK12771 137 GKRVAVIGGGPAGLSAAYHLRRM---GHAVTIFEAGPK 171 (564)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC---CCeEEEEecCCC
Confidence 35899999999999999999999 999999998763
No 376
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=97.50 E-value=8e-05 Score=82.47 Aligned_cols=33 Identities=30% Similarity=0.565 Sum_probs=30.9
Q ss_pred ccEEEECCChHHHHHHHHHHH----hcCCCceEEEEeccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKE----KVLDGCRVAVVDRDF 136 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~----~~~~g~~v~vie~~~ 136 (673)
|||+|||||++|+++|+.|++ . |++|+|||+..
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~---G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK---DLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC---CCeEEEEeCCC
Confidence 799999999999999999998 6 99999999954
No 377
>PLN02697 lycopene epsilon cyclase
Probab=97.50 E-value=0.0001 Score=82.79 Aligned_cols=35 Identities=26% Similarity=0.470 Sum_probs=32.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..|||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak~---Gl~V~LIe~~~ 141 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAKL---GLNVGLIGPDL 141 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC---CCcEEEecCcc
Confidence 359999999999999999999999 99999999864
No 378
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=97.49 E-value=9.4e-05 Score=80.62 Aligned_cols=34 Identities=21% Similarity=0.465 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
.+||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~---G~~v~viE~~~ 35 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA---GIDNVILERQS 35 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC---CCCEEEEECCC
Confidence 37999999999999999999999 99999999975
No 379
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=97.48 E-value=9.3e-05 Score=80.59 Aligned_cols=33 Identities=27% Similarity=0.584 Sum_probs=31.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~ 135 (673)
.+||+|||||++|+++|..|++. |++|+|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~---G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA---GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC---CCcEEEEccC
Confidence 47999999999999999999999 9999999997
No 380
>PRK07045 putative monooxygenase; Reviewed
Probab=97.48 E-value=0.0001 Score=80.23 Aligned_cols=35 Identities=37% Similarity=0.616 Sum_probs=32.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..+||+|||||++|+++|+.|++. |.+|+|+|+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~---G~~v~v~E~~~ 38 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR---GHSVTVVERAA 38 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc---CCcEEEEeCCC
Confidence 348999999999999999999999 99999999985
No 381
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.48 E-value=0.0038 Score=72.09 Aligned_cols=49 Identities=27% Similarity=0.304 Sum_probs=39.7
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCcee
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLR 302 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~ 302 (673)
..+||+|||+|..|..+|..++ +.|.+|+|||+... .-|.++.+.|++.
T Consensus 115 ~~yDviVIG~G~gG~~aA~~aa---~~G~kV~lie~~~~--------~lGGtCvn~GCiP 163 (659)
T PTZ00153 115 EEYDVGIIGCGVGGHAAAINAM---ERGLKVIIFTGDDD--------SIGGTCVNVGCIP 163 (659)
T ss_pred ccCCEEEECCCHHHHHHHHHHH---HCCCcEEEEeCCCC--------ccccceeEeCCcc
Confidence 4689999999999999999999 89999999997632 1245666777654
No 382
>PLN02985 squalene monooxygenase
Probab=97.48 E-value=0.00012 Score=82.47 Aligned_cols=37 Identities=38% Similarity=0.704 Sum_probs=33.7
Q ss_pred CCccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 97 FPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 97 ~~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
....+||+|||||++|+++|+.|++. |++|+|+|++.
T Consensus 40 ~~~~~DViIVGAG~aGlalA~aLa~~---G~~V~vlEr~~ 76 (514)
T PLN02985 40 KDGATDVIIVGAGVGGSALAYALAKD---GRRVHVIERDL 76 (514)
T ss_pred cCCCceEEEECCCHHHHHHHHHHHHc---CCeEEEEECcC
Confidence 34568999999999999999999999 99999999974
No 383
>KOG4254|consensus
Probab=97.48 E-value=0.00062 Score=72.06 Aligned_cols=67 Identities=22% Similarity=0.196 Sum_probs=54.0
Q ss_pred EEeccCCceeeCHHHHHHHHHHHHHHcCCeEEE-eceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCE
Q psy10285 394 ACLGLEKEGWFDPWLYLNAVKKKAISLGAEYVR-GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAI 472 (673)
Q Consensus 394 g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~~-~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~ 472 (673)
+.+..+.+|. ..+..++++.+++.|.+|.. .+|.+|..++ |++.| |+..+| +++.++.
T Consensus 254 g~~~Yp~GG~---Gavs~aia~~~~~~GaeI~tka~Vq~Illd~--------------gka~G--V~L~dG--~ev~sk~ 312 (561)
T KOG4254|consen 254 GGWGYPRGGM---GAVSFAIAEGAKRAGAEIFTKATVQSILLDS--------------GKAVG--VRLADG--TEVRSKI 312 (561)
T ss_pred CcccCCCCCh---hHHHHHHHHHHHhccceeeehhhhhheeccC--------------CeEEE--EEecCC--cEEEeee
Confidence 4444566665 67888999999999999995 5999999887 56777 788899 5889999
Q ss_pred EEEcCCCCc
Q psy10285 473 CVIAAGAYS 481 (673)
Q Consensus 473 VVlAtG~~s 481 (673)
||--++.|-
T Consensus 313 VvSNAt~~~ 321 (561)
T KOG4254|consen 313 VVSNATPWD 321 (561)
T ss_pred eecCCchHH
Confidence 998888874
No 384
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=97.45 E-value=0.00011 Score=80.34 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
+||+|||||++|+++|+.|++. |++|+|||+..
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~---G~~V~llE~~~ 33 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA---GIQTFLLERKP 33 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC---CCcEEEEecCC
Confidence 5899999999999999999999 99999999874
No 385
>PRK08244 hypothetical protein; Provisional
Probab=97.45 E-value=0.00011 Score=82.65 Aligned_cols=35 Identities=29% Similarity=0.546 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.|||+|||||++|+++|+.|++. |++|+||||...
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~---G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA---GVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCC
Confidence 48999999999999999999999 999999999763
No 386
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=97.45 E-value=0.00011 Score=82.67 Aligned_cols=35 Identities=20% Similarity=0.526 Sum_probs=32.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..|||||||||+||+.||+.+|+. |++|+|||++.
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR~---G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAARM---GAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHHc---CCcEEEEeccc
Confidence 359999999999999999999999 99999999874
No 387
>PRK08163 salicylate hydroxylase; Provisional
Probab=97.44 E-value=0.00012 Score=79.83 Aligned_cols=34 Identities=26% Similarity=0.507 Sum_probs=32.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..||+|||||++|+++|+.|++. |++|+|+||..
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~---g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQ---GIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhC---CCcEEEEeeCc
Confidence 47999999999999999999999 99999999975
No 388
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=97.44 E-value=0.00036 Score=71.53 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=31.5
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
...+|+|||+|++|+++|+.|+ .-++|+++|.+..
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls----~rhdVTLfEA~~r 41 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLS----RRHDVTLFEADRR 41 (447)
T ss_pred CCcceEEEcccchhhhhHHhhh----cccceEEEecccc
Confidence 4578999999999999999998 4589999999887
No 389
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=97.43 E-value=0.00012 Score=79.41 Aligned_cols=33 Identities=30% Similarity=0.690 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
||+|||||++|+++|+.|++. |++|+|+||...
T Consensus 1 dViIvGaG~aGl~~A~~L~~~---G~~v~v~Er~~~ 33 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS---GLKIALIEATPA 33 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC---CCEEEEEeCCCc
Confidence 799999999999999999999 999999999863
No 390
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.43 E-value=0.00049 Score=75.68 Aligned_cols=34 Identities=26% Similarity=0.366 Sum_probs=32.1
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..|.||||||+||++|..|++. |+.|+|.|+...
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~---G~~Vtv~e~~~~ 157 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA---GHDVTVFERVAL 157 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC---CCeEEEeCCcCC
Confidence 6899999999999999999999 999999999864
No 391
>PRK06184 hypothetical protein; Provisional
Probab=97.43 E-value=0.00013 Score=82.37 Aligned_cols=35 Identities=23% Similarity=0.535 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||+|||||++||++|+.|++. |++|+||||...
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~---Gi~v~viE~~~~ 37 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARR---GVSFRLIEKAPE 37 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHC---CCcEEEEeCCCC
Confidence 48999999999999999999999 999999999753
No 392
>PRK06847 hypothetical protein; Provisional
Probab=97.42 E-value=0.00014 Score=78.81 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=32.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
+..||+|||||++|+++|+.|++. |++|+|+|+..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~---g~~v~v~E~~~ 37 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA---GIAVDLVEIDP 37 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC---CCCEEEEecCC
Confidence 347999999999999999999999 99999999875
No 393
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.42 E-value=0.00046 Score=82.84 Aligned_cols=37 Identities=24% Similarity=0.437 Sum_probs=34.3
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+.+++|+|||+|++|+++|++|+ +.|++|+|+|+.+.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~La---r~G~~VtVfE~~~~ 340 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLA---VEGFPVTVFEAFHD 340 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHH---HCCCeEEEEeeCCC
Confidence 35789999999999999999999 89999999999876
No 394
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=97.42 E-value=0.00013 Score=80.39 Aligned_cols=33 Identities=24% Similarity=0.548 Sum_probs=27.5
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
||||||||++|++||+.+|+. |++|+|||+...
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~---G~~VlLiE~~~~ 33 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA---GAKVLLIEKGGF 33 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT---TS-EEEE-SSSS
T ss_pred CEEEECccHHHHHHHHHHHHC---CCEEEEEECCcc
Confidence 899999999999999999999 999999999864
No 395
>KOG1335|consensus
Probab=97.41 E-value=0.0024 Score=66.41 Aligned_cols=48 Identities=31% Similarity=0.405 Sum_probs=41.1
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCcee
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLR 302 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~ 302 (673)
.++||+|||+|+.|-.+|...+ +.|.+...||++.. -|.++.+.|.+.
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAa---QlGlkTacvEkr~~---------LGGTcLnvGcIP 85 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAA---QLGLKTACVEKRGT---------LGGTCLNVGCIP 85 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHH---HhcceeEEEeccCc---------cCceeeeccccc
Confidence 4589999999999999999999 89999999999776 245677777764
No 396
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=97.41 E-value=0.00012 Score=76.49 Aligned_cols=34 Identities=35% Similarity=0.498 Sum_probs=29.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCC-ceEEEEecccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDG-CRVAVVDRDFT 137 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g-~~v~vie~~~~ 137 (673)
||+||||+|++|+.+|.+|++. + .+|+|||++..
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~---~~~~VlvlEaG~~ 35 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEA---GNKKVLVLEAGPR 35 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTS---TTS-EEEEESSBS
T ss_pred CCEEEECcCHHHHHHHHHHhhC---CCCcEEEEEcccc
Confidence 8999999999999999999998 6 79999999753
No 397
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=97.40 E-value=0.00014 Score=81.77 Aligned_cols=34 Identities=32% Similarity=0.478 Sum_probs=32.8
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
|||||||||++||++|..|++. |++|+|+||+..
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~---G~~V~vlE~~~~ 34 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVK---GAKVLVLERYLI 34 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHC---CCcEEEEECCCC
Confidence 6999999999999999999999 999999999986
No 398
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=97.40 E-value=0.00017 Score=79.92 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=31.4
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCC-ceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDG-CRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g-~~v~vie~~~~ 137 (673)
||||||+|.+|+++|+.|+++ | .+|+||||...
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~---G~~~V~vlEk~~~ 34 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA---GAANVVLLEKMPV 34 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc---CCccEEEEecCCC
Confidence 899999999999999999999 9 99999999864
No 399
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.39 E-value=0.00018 Score=82.90 Aligned_cols=36 Identities=25% Similarity=0.446 Sum_probs=33.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+||||||+|.||++||+.+++. |++|+||||...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~---G~~VilveK~~~ 84 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEH---GFNTACITKLFP 84 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhc---CCcEEEEEcCCC
Confidence 458999999999999999999999 999999999864
No 400
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=97.39 E-value=0.00067 Score=73.18 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=29.7
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+|+|||||.+|+.+|..|.++.....+|+||++...
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~ 36 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSST 36 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCC
Confidence 489999999999999998622234689999998776
No 401
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.39 E-value=0.00015 Score=78.97 Aligned_cols=36 Identities=28% Similarity=0.567 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~ 135 (673)
.+||+|||||++|+++|+.|++....|.+|+|+|+.
T Consensus 3 ~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 3 RMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred cCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 489999999999999999998853338999999995
No 402
>KOG0029|consensus
Probab=97.39 E-value=0.00018 Score=80.16 Aligned_cols=37 Identities=24% Similarity=0.363 Sum_probs=33.5
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+..+|||||||++||+||..|.+. |.+|+|+|.+..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~~---G~~V~VLEARdR 49 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQDF---GFDVLVLEARDR 49 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHHc---CCceEEEeccCC
Confidence 3457999999999999999999999 999999997664
No 403
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=97.39 E-value=0.00015 Score=79.22 Aligned_cols=34 Identities=24% Similarity=0.438 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
.+||+|||||++|+++|+.|++. |++|+|+|+..
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~---G~~v~v~E~~~ 35 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA---GIDSVVLERRS 35 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc---CCCEEEEEcCC
Confidence 47999999999999999999999 99999999975
No 404
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.39 E-value=0.00017 Score=71.60 Aligned_cols=32 Identities=34% Similarity=0.610 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
+|+|||+|++|+++|+.|++. |.+|+|+||..
T Consensus 3 siaIVGaGiAGl~aA~~L~~a---G~~vtV~eKg~ 34 (331)
T COG3380 3 SIAIVGAGIAGLAAAYALREA---GREVTVFEKGR 34 (331)
T ss_pred cEEEEccchHHHHHHHHHHhc---CcEEEEEEcCC
Confidence 799999999999999999999 99999999975
No 405
>PRK07804 L-aspartate oxidase; Provisional
Probab=97.39 E-value=0.00022 Score=81.09 Aligned_cols=37 Identities=27% Similarity=0.462 Sum_probs=33.9
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...+||||||+|.||+++|+.+++. |.+|+||||...
T Consensus 14 ~~~~DVlVIG~G~AGl~AAi~aae~---G~~VilleK~~~ 50 (541)
T PRK07804 14 RDAADVVVVGSGVAGLTAALAARRA---GRRVLVVTKAAL 50 (541)
T ss_pred ccccCEEEECccHHHHHHHHHHHHc---CCeEEEEEccCC
Confidence 3468999999999999999999999 999999999864
No 406
>KOG2311|consensus
Probab=97.38 E-value=0.00063 Score=72.34 Aligned_cols=69 Identities=19% Similarity=0.240 Sum_probs=49.3
Q ss_pred ceeeCHHHHHHHHHHHHHHc-CCeEEEeceeEEEecCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcCCC
Q psy10285 401 EGWFDPWLYLNAVKKKAISL-GAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479 (673)
Q Consensus 401 ~g~i~~~~~~~~l~~~~~~~-Gv~i~~~~V~~i~~~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAtG~ 479 (673)
-+++|-..|...|.+.+... +.+|.++.|.++...+.. ..-.+|.| |.+.+| ..+.|+.||+.||.
T Consensus 118 RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~---------~~~~~~~g--V~l~dg--t~v~a~~VilTTGT 184 (679)
T KOG2311|consen 118 RAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPD---------DGHCVVSG--VVLVDG--TVVYAESVILTTGT 184 (679)
T ss_pred HHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCC---------CCceEEEE--EEEecC--cEeccceEEEeecc
Confidence 35677777777787776443 677888899998765530 00024777 777888 48999999999998
Q ss_pred CcH
Q psy10285 480 YSG 482 (673)
Q Consensus 480 ~s~ 482 (673)
|..
T Consensus 185 FL~ 187 (679)
T KOG2311|consen 185 FLR 187 (679)
T ss_pred cee
Confidence 754
No 407
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=97.38 E-value=0.00016 Score=79.62 Aligned_cols=33 Identities=33% Similarity=0.584 Sum_probs=29.6
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
||||||+|.+|+++|+.|+++ |.+|+||||...
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~---G~~V~lvek~~~ 33 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA---GAKVLLVEKGPR 33 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT---TT-EEEEESSSG
T ss_pred CEEEECCCHHHHHHHHHHhhh---cCeEEEEEeecc
Confidence 899999999999999999999 999999999864
No 408
>PTZ00052 thioredoxin reductase; Provisional
Probab=97.38 E-value=0.0038 Score=70.27 Aligned_cols=33 Identities=33% Similarity=0.450 Sum_probs=31.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~ 279 (673)
.+||+|||+|++|+.+|..++ +.|++|+|||+.
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa---~~G~~V~lie~~ 37 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAA---AHGKKVALFDYV 37 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHH---hCCCeEEEEecc
Confidence 479999999999999999999 899999999974
No 409
>PRK07233 hypothetical protein; Provisional
Probab=97.37 E-value=0.00023 Score=78.58 Aligned_cols=33 Identities=36% Similarity=0.629 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+|||||||++||++|++|++. |++|+|+|++..
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~---G~~v~vlE~~~~ 33 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR---GHEVTVFEADDQ 33 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCcEEEEEeCCC
Confidence 589999999999999999999 999999999875
No 410
>KOG2415|consensus
Probab=97.37 E-value=0.00019 Score=74.94 Aligned_cols=38 Identities=34% Similarity=0.510 Sum_probs=33.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhc---CCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKV---LDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~---~~g~~v~vie~~~~ 137 (673)
.+||+|||||+||||+|++|.|+. ...++|.|+|+...
T Consensus 76 ~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~ 116 (621)
T KOG2415|consen 76 EVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAE 116 (621)
T ss_pred cccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccc
Confidence 589999999999999999999876 34689999999764
No 411
>PRK07236 hypothetical protein; Provisional
Probab=97.36 E-value=0.00018 Score=78.39 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..||+|||||++||++|+.|++. |++|+|+|+..
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~---G~~v~v~E~~~ 39 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRA---GWDVDVFERSP 39 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhC---CCCEEEEecCC
Confidence 47999999999999999999999 99999999874
No 412
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=97.36 E-value=0.00016 Score=79.11 Aligned_cols=33 Identities=36% Similarity=0.577 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCC--ceEEEEeccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDG--CRVAVVDRDF 136 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g--~~v~vie~~~ 136 (673)
|||+|||||++|+++|+.|++. | ++|+|||+..
T Consensus 2 ~dv~IvGaG~aGl~~A~~L~~~---g~g~~v~liE~~~ 36 (403)
T PRK07333 2 CDVVIAGGGYVGLALAVALKQA---APHLPVTVVDAAP 36 (403)
T ss_pred CCEEEECccHHHHHHHHHHhcC---CCCCEEEEEeCCC
Confidence 8999999999999999999998 6 9999999975
No 413
>PTZ00367 squalene epoxidase; Provisional
Probab=97.35 E-value=0.0002 Score=81.22 Aligned_cols=35 Identities=29% Similarity=0.632 Sum_probs=32.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..|||||||||++|+++|+.|++. |++|+|+|++.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~---G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQ---GRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhc---CCEEEEEcccc
Confidence 469999999999999999999999 99999999864
No 414
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=97.35 E-value=0.00017 Score=78.35 Aligned_cols=33 Identities=30% Similarity=0.711 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCC-ceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDG-CRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g-~~v~vie~~~~ 137 (673)
||+|||||++|+++|+.|++. | ++|+|+|+...
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~---G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL---GKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC---CCceEEEEeCCCc
Confidence 899999999999999999999 9 99999999763
No 415
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=97.34 E-value=0.0011 Score=73.25 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=31.9
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..++|+|||||.+|+.+|..|. ....+|+||++.+.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~---~~~~~ItlI~~~~~ 44 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLD---PKKYNITVISPRNH 44 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhC---cCCCeEEEEcCCCC
Confidence 4578999999999999999997 66789999998776
No 416
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=97.34 E-value=0.00017 Score=78.24 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=31.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
+||+|||||++|+++|+.|++. |++|+|+|+..
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~---G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK---GIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC---CCeEEEecCCC
Confidence 6999999999999999999999 99999999874
No 417
>PRK06126 hypothetical protein; Provisional
Probab=97.33 E-value=0.00021 Score=81.51 Aligned_cols=35 Identities=29% Similarity=0.599 Sum_probs=32.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..+||+|||||++|+++|+.|++. |++|+|+|+..
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~---G~~v~viEr~~ 40 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRR---GVDSILVERKD 40 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHC---CCcEEEEeCCC
Confidence 458999999999999999999999 99999999875
No 418
>PRK07190 hypothetical protein; Provisional
Probab=97.33 E-value=0.0002 Score=80.25 Aligned_cols=35 Identities=31% Similarity=0.502 Sum_probs=32.8
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||+|||||++||++|+.|++. |.+|+|||+...
T Consensus 5 ~~dVlIVGAGPaGL~lA~~Lar~---Gi~V~llEr~~~ 39 (487)
T PRK07190 5 VTDVVIIGAGPVGLMCAYLGQLC---GLNTVIVDKSDG 39 (487)
T ss_pred cceEEEECCCHHHHHHHHHHHHc---CCCEEEEeCCCc
Confidence 48999999999999999999999 999999999864
No 419
>KOG2852|consensus
Probab=97.32 E-value=0.00017 Score=72.01 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=59.7
Q ss_pred ccEEEECCChHHHHHHHHHHHhc--CC-CceEEEEecccccccCcCCCCCCCCCCCccccccchhhcCCCcccccccCch
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKV--LD-GCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRISTSGQPTQESKVSDPH 177 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~--~~-g~~v~vie~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ 177 (673)
..|+|||||++|.++||+|++++ .+ .+.|+|+|.... ..++|+..++.+.....+.....++..+
T Consensus 11 k~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I------------A~gaSGkasgfLa~wc~~s~~~~La~ls 78 (380)
T KOG2852|consen 11 KKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI------------AGGASGKASGFLAKWCQPSIIQPLATLS 78 (380)
T ss_pred eEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc------------ccccccccchhhHhhhCCcccchhhHHH
Confidence 68999999999999999999985 12 278999998865 5667777777776555555566778888
Q ss_pred HHHHHhhcccc
Q psy10285 178 KALKETTNRYS 188 (673)
Q Consensus 178 ~~~~~~~~~~~ 188 (673)
..+.+.+.+.+
T Consensus 79 fkLh~~Lsdey 89 (380)
T KOG2852|consen 79 FKLHEELSDEY 89 (380)
T ss_pred HHHHHHHHHhh
Confidence 88888886544
No 420
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.31 E-value=0.00025 Score=81.46 Aligned_cols=36 Identities=22% Similarity=0.490 Sum_probs=33.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+||||||+|.||++||+.+++. |.+|+||||...
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~---G~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEA---GLKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHc---CCcEEEEEccCC
Confidence 458999999999999999999999 999999999753
No 421
>PRK06834 hypothetical protein; Provisional
Probab=97.31 E-value=0.00021 Score=80.06 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=32.3
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
++||+|||||++|+++|+.|++. |.+|+|||+..
T Consensus 3 ~~dVlIVGaGp~Gl~lA~~La~~---G~~v~vlEr~~ 36 (488)
T PRK06834 3 EHAVVIAGGGPTGLMLAGELALA---GVDVAIVERRP 36 (488)
T ss_pred cceEEEECCCHHHHHHHHHHHHC---CCcEEEEecCC
Confidence 48999999999999999999999 99999999875
No 422
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=97.30 E-value=0.00025 Score=80.15 Aligned_cols=34 Identities=35% Similarity=0.503 Sum_probs=32.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
++||||||+| +|+++|+.+++. |.+|+||||...
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~~---G~~V~vlEk~~~ 40 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAARE---GLSVALVEATDK 40 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHHC---CCcEEEEecCCC
Confidence 5899999999 999999999999 999999999864
No 423
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=97.30 E-value=0.00024 Score=81.00 Aligned_cols=37 Identities=27% Similarity=0.590 Sum_probs=33.9
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+..+||+|||||++|+++|+.|++. |++|+|||+...
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~---G~~v~viE~~~~ 57 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ---GVPVVLLDDDDT 57 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC---CCcEEEEeCCCC
Confidence 3568999999999999999999999 999999999863
No 424
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=97.29 E-value=0.00034 Score=80.19 Aligned_cols=35 Identities=34% Similarity=0.518 Sum_probs=33.0
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
++||||||+|++|+++|+.++++ |++|+||||...
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~~---G~~v~llEk~~~ 43 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARKL---GLDVVVLEKEPV 43 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHHc---CCeEEEEecCCC
Confidence 58999999999999999999999 999999999864
No 425
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.28 E-value=0.00025 Score=81.95 Aligned_cols=38 Identities=29% Similarity=0.522 Sum_probs=34.1
Q ss_pred CCccccEEEECCChHHHHHHHHHHH-hcCCCceEEEEecccc
Q psy10285 97 FPTHVDILIIGGGAIGSSIAYFIKE-KVLDGCRVAVVDRDFT 137 (673)
Q Consensus 97 ~~~~~dvviiG~G~~G~~~A~~l~~-~~~~g~~v~vie~~~~ 137 (673)
++.++||+|||||++||++|+.|++ . |++|+|||+...
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~---Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFP---DITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCC---CCcEEEEEcCCC
Confidence 4557999999999999999999999 6 899999998753
No 426
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.26 E-value=0.00031 Score=80.47 Aligned_cols=37 Identities=27% Similarity=0.468 Sum_probs=33.9
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..++||||||+|.+|+++|+.+++. |++|+||||...
T Consensus 9 ~~~~DVvVVG~G~AGl~AA~~aae~---G~~VivlEk~~~ 45 (584)
T PRK12835 9 DREVDVLVVGSGGGGMTAALTAAAR---GLDTLVVEKSAH 45 (584)
T ss_pred cCcCCEEEECccHHHHHHHHHHHHC---CCcEEEEEcCCC
Confidence 3468999999999999999999999 999999999864
No 427
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.26 E-value=0.0017 Score=71.42 Aligned_cols=35 Identities=14% Similarity=0.197 Sum_probs=30.7
Q ss_pred cccEEEECCChHHHHHHHHHH-HhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIK-EKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~-~~~~~g~~v~vie~~~~ 137 (673)
...|+|||||+||+.+|.+|+ +. |.+|+|+|+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~---g~~VtlfEk~p~ 74 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHE---RVKVDIFEKLPN 74 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhc---CCeEEEEecCCC
Confidence 357999999999999999865 55 899999999875
No 428
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.26 E-value=0.00029 Score=81.36 Aligned_cols=36 Identities=36% Similarity=0.558 Sum_probs=33.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+||||||+|.||++||+.+++. |.+|+||||...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~---G~~V~lieK~~~ 42 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARER---GLRVAVVCKSLF 42 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHC---CCCEEEEeccCC
Confidence 358999999999999999999999 999999999864
No 429
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=97.26 E-value=0.0003 Score=81.04 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=33.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.++||||||+|.||+++|+.+++. |.+|+||||...
T Consensus 28 ~~~DVlVIG~G~AGl~AAi~Aa~~---G~~V~lveK~~~ 63 (617)
T PTZ00139 28 HTYDAVVVGAGGAGLRAALGLVEL---GYKTACISKLFP 63 (617)
T ss_pred cccCEEEECccHHHHHHHHHHHHc---CCcEEEEeccCC
Confidence 468999999999999999999999 999999999864
No 430
>PRK06753 hypothetical protein; Provisional
Probab=97.25 E-value=0.00026 Score=76.58 Aligned_cols=32 Identities=34% Similarity=0.547 Sum_probs=30.9
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
||+|||||++|+++|+.|++. |++|+|+|++.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~---g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ---GHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC---CCcEEEEecCC
Confidence 799999999999999999999 99999999986
No 431
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.24 E-value=0.00032 Score=80.50 Aligned_cols=35 Identities=20% Similarity=0.310 Sum_probs=32.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||||||+|.|||+||+.+++. |++|+||||...
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~---G~~V~lieK~~~ 37 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEA---GVHVDLFSLVPV 37 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHc---CCcEEEEEccCC
Confidence 36999999999999999999999 999999999864
No 432
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=97.24 E-value=0.0003 Score=79.25 Aligned_cols=34 Identities=24% Similarity=0.579 Sum_probs=32.4
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.||||||||++||++|..|++. |++|+|+|++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~---G~~v~vlE~~~~ 35 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR---GYRVTLLEQHAQ 35 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC---CCeEEEEecCCC
Confidence 4899999999999999999999 999999999976
No 433
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=97.24 E-value=0.00034 Score=79.63 Aligned_cols=37 Identities=32% Similarity=0.603 Sum_probs=33.9
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
...+||+|||||++|+++|+.|++. |++|+|||+...
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~---G~~v~v~Er~~~ 44 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY---GVRVLVLERWPT 44 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCC
Confidence 4468999999999999999999999 999999999863
No 434
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=97.24 E-value=0.0003 Score=80.15 Aligned_cols=35 Identities=26% Similarity=0.498 Sum_probs=33.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..+||||||+|.+||++|+.+++. |++|+||||..
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~---G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA---GKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 458999999999999999999999 99999999986
No 435
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.22 E-value=0.00034 Score=79.94 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||||||+|.||+++|+.+++. |.+|+||||...
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae~---G~~V~lveK~~~ 39 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIASA---GFKVAVISKVFP 39 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHHC---CCcEEEEEccCC
Confidence 48999999999999999999999 999999999853
No 436
>PRK07588 hypothetical protein; Provisional
Probab=97.22 E-value=0.00029 Score=76.81 Aligned_cols=32 Identities=25% Similarity=0.608 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
||+|||||++|+++|+.|++. |++|+|+|+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~---G~~v~v~E~~~ 33 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY---GHEPTLIERAP 33 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC---CCceEEEeCCC
Confidence 899999999999999999999 99999999975
No 437
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.21 E-value=0.00037 Score=80.61 Aligned_cols=35 Identities=29% Similarity=0.401 Sum_probs=32.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
..+||||||+|.|||+||+.+++. |.+|+|||+..
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~---G~~VilieK~~ 68 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGEL---GYNVKVFCYQD 68 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHc---CCcEEEEecCC
Confidence 468999999999999999999999 99999999864
No 438
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.20 E-value=0.0044 Score=68.96 Aligned_cols=44 Identities=32% Similarity=0.485 Sum_probs=34.7
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCcee
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLR 302 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~ 302 (673)
++||+|||+|..|..+|. + ..|++|++||+... |.++.+.|++.
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~---~~g~~V~lie~~~~----------GGtC~n~GCiP 45 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--R---FADKRIAIVEKGTF----------GGTCLNVGCIP 45 (452)
T ss_pred CcCEEEECCCHHHHHHHH--H---HCCCeEEEEeCCCC----------CCeeeccCccc
Confidence 489999999999988753 4 46999999999777 44566777654
No 439
>PLN02268 probable polyamine oxidase
Probab=97.19 E-value=0.00034 Score=77.41 Aligned_cols=33 Identities=21% Similarity=0.488 Sum_probs=31.2
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+|||||||++||++|+.|.+. |++|+|+|++..
T Consensus 2 ~VvVIGaGisGL~aA~~L~~~---g~~v~vlEa~~r 34 (435)
T PLN02268 2 SVIVIGGGIAGIAAARALHDA---SFKVTLLESRDR 34 (435)
T ss_pred CEEEECCCHHHHHHHHHHHhC---CCeEEEEeCCCC
Confidence 799999999999999999998 999999998765
No 440
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=97.18 E-value=0.00037 Score=77.36 Aligned_cols=33 Identities=33% Similarity=0.622 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCC--ceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDG--CRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g--~~v~vie~~~~ 137 (673)
+|+|||||++||+||+.|++. | ++|+|+|+...
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~---G~~~~V~vlEa~~~ 36 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK---GPDADITLLEASDR 36 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh---CCCCCEEEEEcCCC
Confidence 699999999999999999998 7 89999999764
No 441
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.18 E-value=0.00036 Score=80.01 Aligned_cols=35 Identities=29% Similarity=0.515 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||||||+|.|||+||+.+++. |.+|+||||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~Aa~~---G~~V~lleK~~~ 41 (588)
T PRK08958 7 EFDAVVIGAGGAGMRAALQISQS---GQSCALLSKVFP 41 (588)
T ss_pred ccCEEEECccHHHHHHHHHHHHc---CCcEEEEEccCC
Confidence 58999999999999999999999 999999999853
No 442
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.18 E-value=0.00041 Score=79.62 Aligned_cols=36 Identities=28% Similarity=0.538 Sum_probs=33.0
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+||||||+|.|||+||+.+++. |.+|+||||...
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~---G~~V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARA---GLSVAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHC---CCcEEEEeccCC
Confidence 358999999999999999999999 999999999753
No 443
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.17 E-value=0.00043 Score=67.61 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=30.0
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
||||||||++|+++|.+|++. +.+|+|+|+..
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~---~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP---GAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT---TSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcC---CCeEEEEeccc
Confidence 799999999999999999988 99999998764
No 444
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.17 E-value=0.0031 Score=69.96 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=29.9
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+|+|||+|.+|+++|..|+ ++....+|+|||+.+.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~-~~~~~~~Vtli~~~~~ 36 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAK-RLNKELEITVYEKTDI 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHH-HHCCCCcEEEEECCCc
Confidence 6999999999999999998 2233569999999887
No 445
>PRK07538 hypothetical protein; Provisional
Probab=97.15 E-value=0.00037 Score=76.56 Aligned_cols=32 Identities=31% Similarity=0.553 Sum_probs=30.7
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
||+|||||++|+++|+.|++. |++|+|+|+..
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~---G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQR---GIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhC---CCcEEEEEcCC
Confidence 899999999999999999999 99999999975
No 446
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=97.15 E-value=0.00032 Score=79.15 Aligned_cols=32 Identities=28% Similarity=0.405 Sum_probs=30.7
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 103 vviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
|||||||++||+||..|++. |++|+|+|++..
T Consensus 1 vvVIGaG~~GL~aA~~La~~---G~~V~VlE~~~~ 32 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAA---GIPVTVVEQRDK 32 (502)
T ss_pred CEEECcCHHHHHHHHHHHhC---CCcEEEEECCCC
Confidence 69999999999999999999 999999999886
No 447
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.15 E-value=0.00044 Score=78.82 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
++||||||+|.+|+++|+.|++. |++|+|||+...
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~~---G~~v~liEk~~~ 40 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAADS---GLEPLIVEKQDK 40 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC---CCcEEEEecCCC
Confidence 58999999999999999999999 999999999753
No 448
>PRK06996 hypothetical protein; Provisional
Probab=97.15 E-value=0.00037 Score=76.16 Aligned_cols=39 Identities=23% Similarity=0.471 Sum_probs=32.6
Q ss_pred CccccEEEECCChHHHHHHHHHHHhc-CCCceEEEEeccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKV-LDGCRVAVVDRDF 136 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~-~~g~~v~vie~~~ 136 (673)
+..+||+|||||++|+++|+.|++.+ ..|++|+|||+..
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence 34589999999999999999999982 1236899999974
No 449
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.14 E-value=0.0006 Score=77.65 Aligned_cols=35 Identities=34% Similarity=0.553 Sum_probs=32.4
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+|||||||+| +|+++|+.+++. |++|+||||...
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~~---G~~v~v~Ek~~~ 49 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHEL---GLSVLIVEKSSY 49 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHHC---CCcEEEEecCCC
Confidence 46999999999 899999999999 999999999764
No 450
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.13 E-value=0.00049 Score=78.25 Aligned_cols=37 Identities=30% Similarity=0.593 Sum_probs=32.3
Q ss_pred CCccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 97 FPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 97 ~~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+..+||||||+|.||++||+.++ . |.+|+||||...
T Consensus 6 ~~~e~DVlVVG~G~AGl~AAi~A~-~---G~~V~lieK~~~ 42 (553)
T PRK07395 6 LPSQFDVLVVGSGAAGLYAALCLP-S---HLRVGLITKDTL 42 (553)
T ss_pred ccccCCEEEECccHHHHHHHHHhh-c---CCCEEEEEccCC
Confidence 445689999999999999999985 4 889999999864
No 451
>PRK11445 putative oxidoreductase; Provisional
Probab=97.13 E-value=0.00039 Score=74.67 Aligned_cols=32 Identities=34% Similarity=0.597 Sum_probs=29.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
|||+|||||++|+++|+.|++. ++|+|||+..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~----~~V~liE~~~ 33 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK----MKVIAIDKKH 33 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc----CCEEEEECCC
Confidence 8999999999999999999885 6999999875
No 452
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.12 E-value=0.00049 Score=78.89 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=32.5
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCC---ceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDG---CRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g---~~v~vie~~~~ 137 (673)
.+||||||+|.||++||+.+++. | .+|+||||...
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~---G~~~~~V~lleK~~~ 42 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAER---SGGKLSVAVVSKTQP 42 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHh---CCCCCcEEEEEcccC
Confidence 48999999999999999999999 7 89999999864
No 453
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.00069 Score=73.74 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=38.0
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVG 299 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g 299 (673)
++|+|+|||++|++||+.|+ .+|++|+|+|+++.. ++..+++...-
T Consensus 1 ~rVai~GaG~AgL~~a~~La---~~g~~vt~~ea~~~~------GGk~~s~~~~d 46 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELA---DAGYDVTLYEARDRL------GGKVASWRDSD 46 (485)
T ss_pred CeEEEEcccHHHHHHHHHHH---hCCCceEEEeccCcc------CceeeeeecCC
Confidence 47999999999999999999 999999999998872 34455555543
No 454
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.12 E-value=0.00045 Score=74.65 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.||+|||||++|+.+|+.|++. |++|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~---Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR---GVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC---CCcEEEEEccCc
Confidence 4999999999999999999999 999999998653
No 455
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.12 E-value=0.00039 Score=76.76 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=31.1
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+||||||+|.||++||+.++ . |.+|+||||...
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~---G~~V~lleK~~~ 37 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-K---DLKILMVSKGKL 37 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-c---CCCEEEEecCCC
Confidence 3589999999999999999974 5 899999999864
No 456
>PRK05868 hypothetical protein; Validated
Probab=97.11 E-value=0.00044 Score=74.88 Aligned_cols=33 Identities=24% Similarity=0.557 Sum_probs=31.2
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
.||+|||||++|+++|+.|++. |++|+|+|+..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~---G~~v~viE~~~ 34 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRH---GYSVTMVERHP 34 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhC---CCCEEEEcCCC
Confidence 3899999999999999999999 99999999975
No 457
>PLN02576 protoporphyrinogen oxidase
Probab=97.10 E-value=0.00055 Score=77.14 Aligned_cols=38 Identities=26% Similarity=0.447 Sum_probs=33.3
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+.++||+|||||++||++|++|++.. |++|+|+|+...
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~--g~~v~vlEa~~r 47 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKH--GVNVLVTEARDR 47 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhc--CCCEEEEecCCC
Confidence 34579999999999999999999873 589999999875
No 458
>PLN02815 L-aspartate oxidase
Probab=97.09 E-value=0.00052 Score=78.49 Aligned_cols=35 Identities=34% Similarity=0.525 Sum_probs=32.2
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+||||||+|.|||++|+.+++. | +|+||||...
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae~---G-~VvlleK~~~ 62 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAEY---G-TVAIITKDEP 62 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhhC---C-CEEEEECCCC
Confidence 458999999999999999999998 8 8999999864
No 459
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.06 E-value=0.00057 Score=78.32 Aligned_cols=36 Identities=33% Similarity=0.532 Sum_probs=33.3
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
.+..+|+|||||++||++|+.|++. |++|+|+|++.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~---Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK---GFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc---CCeEEEEeccc
Confidence 4568999999999999999999999 99999999974
No 460
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.06 E-value=0.0005 Score=79.69 Aligned_cols=35 Identities=26% Similarity=0.343 Sum_probs=32.7
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||||||||.|||++|+.+++. |++|+|||+...
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae~---G~~VivleK~~~ 39 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQR---GLDTIVLSLVPA 39 (657)
T ss_pred eccEEEECccHHHHHHHHHHHHc---CCCEEEEeCCCC
Confidence 48999999999999999999999 999999999764
No 461
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.05 E-value=0.00054 Score=76.48 Aligned_cols=33 Identities=27% Similarity=0.532 Sum_probs=31.5
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
+||||||||.||+++|+.|++. |.+|+||||..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~---G~~V~liek~~ 34 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK---GFDVTIIGPGI 34 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC---CCeEEEEeCCC
Confidence 6999999999999999999999 99999999974
No 462
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.04 E-value=0.0007 Score=77.23 Aligned_cols=35 Identities=26% Similarity=0.464 Sum_probs=32.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
++||||||+|.+|+++|+.+++. |++|+||||...
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~~---G~~v~llEk~~~ 41 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAHR---GLSTVVVEKAPH 41 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHHC---CCCEEEEeCCCC
Confidence 58999999999999999999999 999999999764
No 463
>PRK02106 choline dehydrogenase; Validated
Probab=97.04 E-value=0.00055 Score=78.28 Aligned_cols=35 Identities=26% Similarity=0.405 Sum_probs=32.5
Q ss_pred ccccEEEECCChHHHHHHHHHHH-hcCCCceEEEEeccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKE-KVLDGCRVAVVDRDF 136 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~-~~~~g~~v~vie~~~ 136 (673)
..||+||||+|++|+.+|..|++ . |++|+|||++.
T Consensus 4 ~~~D~iIVG~G~aG~vvA~rLae~~---g~~VlvlEaG~ 39 (560)
T PRK02106 4 MEYDYIIIGAGSAGCVLANRLSEDP---DVSVLLLEAGG 39 (560)
T ss_pred CcCcEEEECCcHHHHHHHHHHHhCC---CCeEEEecCCC
Confidence 35999999999999999999999 6 99999999985
No 464
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.04 E-value=0.00053 Score=78.55 Aligned_cols=37 Identities=35% Similarity=0.465 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||||||||.||++||+.|++. ..|.+|+||||...
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~-g~g~~V~vleK~~~ 39 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRL-DPSLDVAVVAKTHP 39 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHh-cCCCcEEEEeccCC
Confidence 48999999999999999999987 11379999999864
No 465
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=97.03 E-value=0.00067 Score=69.01 Aligned_cols=33 Identities=36% Similarity=0.546 Sum_probs=31.6
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
+|++|||||++|+.+|..|+++ |++|+||||+.
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~~---gk~VLIvekR~ 34 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQL---GKRVLIVEKRN 34 (374)
T ss_pred CcEEEECCchhHHHHHHHHHHc---CCEEEEEeccc
Confidence 7999999999999999999999 99999999876
No 466
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.03 E-value=0.0013 Score=75.36 Aligned_cols=37 Identities=35% Similarity=0.558 Sum_probs=33.7
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+.++||||||+|.+|+++|+.+++. |++|+|||+...
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~---g~~v~l~ek~~~ 50 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIA---GLKVLLVERTEY 50 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHC---CCcEEEEecCCC
Confidence 3468999999999999999999999 999999999764
No 467
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=97.02 E-value=0.00085 Score=74.85 Aligned_cols=37 Identities=24% Similarity=0.495 Sum_probs=32.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhc-CCCceEEEEecccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKV-LDGCRVAVVDRDFT 137 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~-~~g~~v~vie~~~~ 137 (673)
.||+|||||++||++|+.|+++. ..|++|+|+|++..
T Consensus 3 ~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r 40 (462)
T TIGR00562 3 KHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDR 40 (462)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCc
Confidence 59999999999999999999862 12689999999875
No 468
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.01 E-value=0.0007 Score=77.60 Aligned_cols=33 Identities=27% Similarity=0.493 Sum_probs=31.3
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
||||||+|.||+++|+.|++. |.+|+||||...
T Consensus 1 DVlVVG~G~AGl~AA~~aae~---G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA---GLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC---CCcEEEEeccCC
Confidence 899999999999999999999 999999999764
No 469
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=96.98 E-value=0.00079 Score=75.65 Aligned_cols=34 Identities=32% Similarity=0.546 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||||||+|.|||++|+.+++. |. |+||||...
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~---G~-V~lleK~~~ 35 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ---GR-VIVLSKAPV 35 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC---CC-EEEEEccCC
Confidence 47999999999999999999998 87 999999853
No 470
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=96.98 E-value=0.0013 Score=81.13 Aligned_cols=36 Identities=22% Similarity=0.465 Sum_probs=33.3
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+||||||+|.||++||+.+++. |.+|+||||...
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~---Ga~VivlEK~~~ 443 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASC---GAQVILLEKEAK 443 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC---CCcEEEEEccCC
Confidence 358999999999999999999999 999999999764
No 471
>PRK06475 salicylate hydroxylase; Provisional
Probab=96.96 E-value=0.00071 Score=74.00 Aligned_cols=33 Identities=27% Similarity=0.425 Sum_probs=31.0
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
-+|+|||||++|+++|+.|++. |++|+|+|+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~---G~~V~i~E~~~ 35 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR---GWAVTIIEKAQ 35 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC---CCcEEEEecCC
Confidence 4799999999999999999999 99999999875
No 472
>PRK12839 hypothetical protein; Provisional
Probab=96.96 E-value=0.0013 Score=75.25 Aligned_cols=37 Identities=32% Similarity=0.444 Sum_probs=33.9
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+.++||||||+|.+|+++|+.|++. |++|+|||+...
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~---g~~v~~iek~~~ 42 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYG---GAKVLVVEKAST 42 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC---CCcEEEEecCCC
Confidence 4469999999999999999999999 999999999764
No 473
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=96.94 E-value=0.001 Score=71.28 Aligned_cols=37 Identities=32% Similarity=0.619 Sum_probs=34.0
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
++.+||||||||.+||++|+.|.+. |.+|+|+|.+..
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka---G~~v~ilEar~r 41 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA---GYQVQILEARDR 41 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc---CcEEEEEeccCC
Confidence 4568999999999999999999999 999999997764
No 474
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=96.93 E-value=0.00091 Score=76.64 Aligned_cols=37 Identities=24% Similarity=0.431 Sum_probs=31.8
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||||||+|.|||+||+.+++. ..|.+|+||||...
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~-g~g~~V~lleK~~~ 40 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEA-NPNLKIALISKVYP 40 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHh-CCCCcEEEEEccCC
Confidence 48999999999999999999986 11379999999864
No 475
>PLN02529 lysine-specific histone demethylase 1
Probab=96.93 E-value=0.01 Score=69.12 Aligned_cols=205 Identities=11% Similarity=-0.000 Sum_probs=0.0
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccC--ceecccCcchhhHHHHHHHH
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVG--GLRQQFSLRENIEMSLFGAE 319 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g--~i~~~~~~~~~~~~~~~~~~ 319 (673)
...++|+|||+|++|+.+|..|+ ..|++|+|+|++.. .++.......+ +....+.....+-.......
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~---~~g~~v~v~E~~~~-------~GG~~~t~~~~~~g~~~~~DlGaswi~g~~~np 227 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLL---SFGFKVVVLEGRNR-------PGGRVYTQKMGRKGQFAAVDLGGSVITGIHANP 227 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHH---HcCCcEEEEecCcc-------CcCceeeecccCCCCceEEecCCeeccccccch
Q ss_pred HHHHHHhhccccCCCCCCcceeecCeEEEe-ccchH------HHHHHHHHHHHHcCCcceeeCHhhHHhhCC--------
Q psy10285 320 FLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGA------ATLEKNHQLQKELGAKNVLLGPEQLKAKFP-------- 384 (673)
Q Consensus 320 ~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~------~~l~~~~~~~~~~g~~~~~l~~~~~~~~~p-------- 384 (673)
++.-..+.--.+......+.+.....-.+. ..... ..+.+..+.....+.....++-.+..+...
T Consensus 228 l~~la~~lgl~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~d~Sl~~~le~~~~~~~~~~t 307 (738)
T PLN02529 228 LGVLARQLSIPLHKVRDNCPLYKPDGALVDKEIDSNIEFIFNKLLDKVTELRQIMGGFANDISLGSVLERLRQLYGVARS 307 (738)
T ss_pred HHHHHHHhCCCccccCCCceEEeCCCcCcchhhhhhHHHHHHHHHHHHHHHHHhcccCccCCCHHHHHHHHHhhhccCCC
Q ss_pred -----------------------CCCcccceeEEeccCCceeeCHHHHHHHHHHHHHHcCCeEE-EeceeEEEecCCccc
Q psy10285 385 -----------------------WLNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNNQV 440 (673)
Q Consensus 385 -----------------------~~~~~~~~~g~~~~~~~g~i~~~~~~~~l~~~~~~~Gv~i~-~~~V~~i~~~~~~~~ 440 (673)
.+....+.........+...--..-...|.+.+.+ ++.|+ +++|++|..+++
T Consensus 308 ~~e~~ll~~~~~~le~a~~~~~s~LSl~~~~~~~~~e~~G~~~~i~GG~~~Li~aLA~-~L~IrLnt~V~~I~~~~d--- 383 (738)
T PLN02529 308 TEERQLLDWHLANLEYANAGCLSDLSAAYWDQDDPYEMGGDHCFLAGGNWRLINALCE-GVPIFYGKTVDTIKYGND--- 383 (738)
T ss_pred HHHHHHHHHHHHHhceecCCChHHhhhhHhhhccccccCCceEEECCcHHHHHHHHHh-cCCEEcCCceeEEEEcCC---
Q ss_pred cccCCCCCCccceeeEEEEcCCCCeeEEecCEEEEcC
Q psy10285 441 HYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAA 477 (673)
Q Consensus 441 ~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~VVlAt 477 (673)
+|.|.+.++ +++||+||+|.
T Consensus 384 --------------GVtV~t~~~---~~~AD~VIVTV 403 (738)
T PLN02529 384 --------------GVEVIAGSQ---VFQADMVLCTV 403 (738)
T ss_pred --------------eEEEEECCE---EEEcCEEEECC
No 476
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=96.93 E-value=0.0034 Score=67.50 Aligned_cols=38 Identities=32% Similarity=0.403 Sum_probs=31.8
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
..++|+|||||..|+.+|..|..+. .+.+|++|++...
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~-~~~~itLVd~~~~ 39 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKL-PDVEITLVDRRDY 39 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcC-CCCcEEEEeCCCc
Confidence 3578999999999999999999221 2588999999887
No 477
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=96.93 E-value=0.00084 Score=72.94 Aligned_cols=34 Identities=26% Similarity=0.462 Sum_probs=31.3
Q ss_pred ccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 101 ~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.||+|||||++|+.+|+.|+++ |++|+|+|+...
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr~---G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQA---GVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHhC---CCcEEEEecccc
Confidence 3899999999999999999999 999999997653
No 478
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.92 E-value=0.00092 Score=76.12 Aligned_cols=34 Identities=35% Similarity=0.570 Sum_probs=31.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||||||+|.||++||+.+ +. |.+|+||||...
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~~---G~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-ER---GKNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-hc---CCCEEEEEccCC
Confidence 48999999999999999999 77 999999999753
No 479
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=96.90 E-value=0.0016 Score=72.87 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=33.2
Q ss_pred cccEEEECCChHHHHHHHHHHHhc-CCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKV-LDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~-~~g~~v~vie~~~~ 137 (673)
..+++|||||++||++|++|++.+ -+|.+|+|+|+...
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~ 60 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDV 60 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCC
Confidence 368999999999999999999964 24789999999875
No 480
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=96.90 E-value=0.00087 Score=73.07 Aligned_cols=33 Identities=39% Similarity=0.632 Sum_probs=30.5
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCC--ceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDG--CRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g--~~v~vie~~~~ 137 (673)
.++|||||++||++||+|+|+ + ..|+|+|++..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~---~p~~~i~lfE~~~r 36 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA---GPDVEVTLFEADDR 36 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh---CCCCcEEEEecCCC
Confidence 489999999999999999999 7 89999999764
No 481
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.90 E-value=0.001 Score=76.40 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=30.9
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+||||||+|.||+++|+.|++ +.+|+||||...
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~----~~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGP----RARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHh----CCCEEEEeCCCC
Confidence 35899999999999999999986 479999999763
No 482
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=96.89 E-value=0.001 Score=67.65 Aligned_cols=34 Identities=26% Similarity=0.504 Sum_probs=32.1
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEeccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~ 136 (673)
++||||||||.+||.+|..||.. |++|+|+|++.
T Consensus 5 ~~dvivvgaglaglvaa~elA~a---G~~V~ildQEg 38 (552)
T COG3573 5 TADVIVVGAGLAGLVAAAELADA---GKRVLILDQEG 38 (552)
T ss_pred cccEEEECccHHHHHHHHHHHhc---CceEEEEcccc
Confidence 58999999999999999999999 99999999864
No 483
>PLN02568 polyamine oxidase
Probab=96.88 E-value=0.0012 Score=74.83 Aligned_cols=39 Identities=26% Similarity=0.269 Sum_probs=32.8
Q ss_pred ccccEEEECCChHHHHHHHHHHHhc--CCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKV--LDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~--~~g~~v~vie~~~~ 137 (673)
+..||||||||++||++|+.|++.+ ..+++|+|+|++..
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~ 44 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDR 44 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCC
Confidence 3479999999999999999999982 12389999998765
No 484
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.87 E-value=0.0018 Score=53.34 Aligned_cols=33 Identities=30% Similarity=0.509 Sum_probs=31.4
Q ss_pred cEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 246 ~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
+|+|||+|.+|+++|..|+ ..|.+|+++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~---~~g~~vtli~~~~~ 33 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALA---ELGKEVTLIERSDR 33 (80)
T ss_dssp EEEEESSSHHHHHHHHHHH---HTTSEEEEEESSSS
T ss_pred CEEEECcCHHHHHHHHHHH---HhCcEEEEEeccch
Confidence 5899999999999999999 89999999999888
No 485
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=96.86 E-value=0.0012 Score=73.58 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=31.0
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+|+|||||++||++|+.|++. |++|+|+|+...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~---G~~v~vlE~~~~ 33 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA---GHTPIVLEARDV 33 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC---CCcEEEEecCCC
Confidence 489999999999999999999 999999998865
No 486
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=96.85 E-value=0.0011 Score=74.15 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=30.6
Q ss_pred cEEEECCChHHHHHHHHHHHhcC---CCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVL---DGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~---~g~~v~vie~~~~ 137 (673)
+|+|||||++||++|+.|++.+. .|.+|+|+|++..
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r 41 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEY 41 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCC
Confidence 69999999999999999998621 1479999999875
No 487
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=96.82 E-value=0.0012 Score=74.53 Aligned_cols=36 Identities=31% Similarity=0.520 Sum_probs=33.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..|||||||||.|||.+|+.+++. |++|+|+||...
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~~---g~~V~l~~K~~~ 40 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAEA---GLKVALLSKAPP 40 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHhc---CCcEEEEEcccc
Confidence 358999999999999999999999 999999999764
No 488
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=96.80 E-value=0.0014 Score=75.10 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=31.9
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
++||||||+|.||++||+.+++. ..|.+|+||||...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~-g~g~~V~lveK~~~ 39 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEA-NPHLDVALISKVYP 39 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHh-CCCCcEEEEEccCC
Confidence 48999999999999999999986 12479999999864
No 489
>PRK08275 putative oxidoreductase; Provisional
Probab=96.79 E-value=0.0012 Score=75.24 Aligned_cols=38 Identities=34% Similarity=0.523 Sum_probs=32.5
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+||||||+|.||++||+.+++. ..|.+|+||||...
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~-g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKER-NPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHh-CCCCeEEEEeCCCC
Confidence 358999999999999999999986 12589999999864
No 490
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.0013 Score=71.68 Aligned_cols=33 Identities=24% Similarity=0.404 Sum_probs=31.1
Q ss_pred cEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.|+|+|||+|||+||+.|++. |..|+|.|++..
T Consensus 2 rVai~GaG~AgL~~a~~La~~---g~~vt~~ea~~~ 34 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA---GYDVTLYEARDR 34 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC---CCceEEEeccCc
Confidence 589999999999999999999 999999998765
No 491
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.78 E-value=0.0025 Score=73.14 Aligned_cols=37 Identities=38% Similarity=0.506 Sum_probs=33.8
Q ss_pred CccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 98 ~~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
+..+||||||+|.+|+++|+.+++. |++|+|||+...
T Consensus 10 ~~~~dvvvvG~G~aG~~aa~~~~~~---g~~v~~iek~~~ 46 (581)
T PRK06134 10 DLECDVLVIGSGAAGLSAAVTAAWH---GLKVIVVEKDPV 46 (581)
T ss_pred CCccCEEEECcCHHHHHHHHHHHHC---CCeEEEEecCCC
Confidence 3469999999999999999999999 999999999763
No 492
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.78 E-value=0.0071 Score=65.44 Aligned_cols=36 Identities=22% Similarity=0.296 Sum_probs=29.6
Q ss_pred ccEEEECCcHHHHHHHHHHHhhccCC-CeEEEEecCCC
Q psy10285 245 VDILIIGGGAIGSSIAYFIKEKVLDG-CRVAVVDRDFT 281 (673)
Q Consensus 245 ~~v~iiG~G~~g~~~A~~l~~~~~~g-~~v~~ie~~~~ 281 (673)
++|+|||+|.+|+.+|.+|. +.... .+|.|+|+.+.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll-~~~~~~~~Isi~e~~~~ 38 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLL-KSPRPSGLISIFEPRPN 38 (474)
T ss_pred ceEEEECCchHHHHHHHHHH-hCCCCCCceEEeccccc
Confidence 68999999999999999998 32232 33999999887
No 493
>PLN02676 polyamine oxidase
Probab=96.76 E-value=0.0015 Score=73.11 Aligned_cols=36 Identities=22% Similarity=0.396 Sum_probs=32.7
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCc-eEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGC-RVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~-~v~vie~~~~ 137 (673)
..+||+|||||++||++|++|++. |. +|+|+|++..
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~---g~~~v~vlE~~~~ 61 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA---GIEDILILEATDR 61 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc---CCCcEEEecCCCC
Confidence 458999999999999999999999 87 5999999864
No 494
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.76 E-value=0.014 Score=63.67 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=33.0
Q ss_pred cccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCC
Q psy10285 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281 (673)
Q Consensus 244 ~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~ 281 (673)
.++++|||+|.+|+++|..+. +.|++|+++|+.+.
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~---~~G~~v~l~e~~~~ 170 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAA---KRGKKVTLIEAADR 170 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHH---HcCCeEEEEEcccc
Confidence 378999999999999999999 89999999999887
No 495
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=96.75 E-value=0.0013 Score=75.32 Aligned_cols=33 Identities=33% Similarity=0.626 Sum_probs=30.4
Q ss_pred cEEEECCChHHHHHHHHHH----HhcCCCceEEEEecccc
Q psy10285 102 DILIIGGGAIGSSIAYFIK----EKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 102 dvviiG~G~~G~~~A~~l~----~~~~~g~~v~vie~~~~ 137 (673)
||||||+|.|||+||+.++ +. |.+|+||||...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~---G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK---GLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC---CCeEEEEEccCC
Confidence 8999999999999999998 56 899999999864
No 496
>KOG4716|consensus
Probab=96.74 E-value=0.0047 Score=63.17 Aligned_cols=57 Identities=25% Similarity=0.293 Sum_probs=41.9
Q ss_pred CCcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCCCCcccccccccccccCcee
Q psy10285 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLR 302 (673)
Q Consensus 242 ~~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~~~~~~~~~~st~~~~g~i~ 302 (673)
..++|.+|||+|..|++||-..+ ..|.+|.+++--.... .+..++-|.|+.|.|.+.
T Consensus 17 sydyDLIviGgGSgGLacaKeAa---~~G~kV~~lDfV~PtP-~GtsWGlGGTCvNVGCIP 73 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAA---DLGAKVACLDFVKPTP-QGTSWGLGGTCVNVGCIP 73 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHH---hcCCcEEEEeecccCC-CCCccccCceeeeccccc
Confidence 35799999999999999999999 8999999998744310 122344555566666553
No 497
>PRK08071 L-aspartate oxidase; Provisional
Probab=96.73 E-value=0.0015 Score=73.68 Aligned_cols=34 Identities=21% Similarity=0.386 Sum_probs=30.6
Q ss_pred cccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 100 ~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
.+||||||+|.||+++|+.+++ |.+|+||||...
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~----g~~V~lveK~~~ 36 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH----EYNVIIITKKTK 36 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc----CCCEEEEeccCC
Confidence 4799999999999999999964 789999999864
No 498
>KOG1238|consensus
Probab=96.73 E-value=0.032 Score=62.47 Aligned_cols=223 Identities=14% Similarity=0.104 Sum_probs=0.0
Q ss_pred CcccEEEECCcHHHHHHHHHHHhhccCCCeEEEEecCCCCC--------------------------------------C
Q psy10285 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVN--------------------------------------Y 284 (673)
Q Consensus 243 ~~~~v~iiG~G~~g~~~A~~l~~~~~~g~~v~~ie~~~~~~--------------------------------------~ 284 (673)
..+|.+|||||-+||..|..|+| ....+|.++|++...+ .
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSE--n~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~ 133 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSE--NPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCY 133 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhcc--CCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCcee
Q ss_pred CcccccccccccccCceecccCcchhhHHHHHHH------HHHHHHHhhccccCCCCCCcceeecCeEEEe--ccchHHH
Q psy10285 285 DLDEYARASTTLSVGGLRQQFSLRENIEMSLFGA------EFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA--SQDGAAT 356 (673)
Q Consensus 285 ~~~~~~~~st~~~~g~i~~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~~~ 356 (673)
.+.+-.-|.+..-.+++...-....+.++...+. +......+.-...........|+..+..... .......
T Consensus 134 wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~~~~~ 213 (623)
T KOG1238|consen 134 WPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVYPNNL 213 (623)
T ss_pred cCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccccCch
Q ss_pred HHHHHHHHHHcCCcceeeCHhhHHhhCCCCCcccceeEEeccCCceeeCHHHHHHHHHHHHH-HcCCeEE-EeceeEEEe
Q psy10285 357 LEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKAI-SLGAEYV-RGEVVDFLR 434 (673)
Q Consensus 357 l~~~~~~~~~~g~~~~~l~~~~~~~~~p~~~~~~~~~g~~~~~~~g~i~~~~~~~~l~~~~~-~~Gv~i~-~~~V~~i~~ 434 (673)
.........+.| ....|...-+..--.+-.-....+..+.-..+. +..... +.+..+. ++.|+.|..
T Consensus 214 ~~~~~~ag~e~G--~~~~D~nG~~~tg~~~l~~t~~~g~R~s~~~a~---------l~~~~~~R~NL~~~~~~~vtrvl~ 282 (623)
T KOG1238|consen 214 FTAFHRAGTEIG--GSIFDRNGERHTGASLLQYTIRNGIRVSLAKAY---------LKPIRLTRPNLHISRNAAVTRVLI 282 (623)
T ss_pred hhHhHHhHHhcC--CCccCCCCccccchhhhhccccCCEEEEehhhh---------hhhhhccCccccccccceEEEEEE
Q ss_pred cCCccccccCCCCCCccceeeEEEEcCCCCeeEEecCE-EEEcCCCC-cHHHHHHcCC
Q psy10285 435 RRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAI-CVIAAGAY-SGQVARMLKI 490 (673)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~v~gv~V~t~~G~~~~i~ad~-VVlAtG~~-s~~l~~~~g~ 490 (673)
+..| .+..++......|...++.+.+ ||+++|+. |++||=..|+
T Consensus 283 D~~~------------~~a~gv~~~~~~~~~~~v~a~kEVILSAGAi~SPQLLMLSGI 328 (623)
T KOG1238|consen 283 DPAG------------KRAKGVEFVRDGGKEHTVKARKEVILSAGAINSPQLLMLSGI 328 (623)
T ss_pred cCCC------------ceEEEEEEEecCceeeeecccceEEEeccccCCHHHHHHcCC
No 499
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=96.73 E-value=0.0015 Score=75.27 Aligned_cols=38 Identities=37% Similarity=0.550 Sum_probs=32.6
Q ss_pred ccccEEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 99 ~~~dvviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
..+||||||+|.||++||+.+++.. +|.+|+||||...
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~-~G~~V~lieK~~~ 47 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWA-PDLKVLIVEKANI 47 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhC-CCCeEEEEECCCc
Confidence 3589999999999999999998851 2689999999864
No 500
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.73 E-value=0.0027 Score=52.29 Aligned_cols=32 Identities=34% Similarity=0.614 Sum_probs=30.2
Q ss_pred EEEECCChHHHHHHHHHHHhcCCCceEEEEecccc
Q psy10285 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137 (673)
Q Consensus 103 vviiG~G~~G~~~A~~l~~~~~~g~~v~vie~~~~ 137 (673)
++|||||++|+-+|..|++. |.+|+||++.+.
T Consensus 2 vvViGgG~ig~E~A~~l~~~---g~~vtli~~~~~ 33 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL---GKEVTLIERSDR 33 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT---TSEEEEEESSSS
T ss_pred EEEECcCHHHHHHHHHHHHh---CcEEEEEeccch
Confidence 79999999999999999999 999999999863
Done!