RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy10285
(673 letters)
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 180 bits (459), Expect = 9e-51
Identities = 103/437 (23%), Positives = 158/437 (36%), Gaps = 66/437 (15%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
+D++IIGGG +G S AY++ E+ G V V++ E + + GG+
Sbjct: 2 SMKMDVVIIGGGIVGLSAAYYLAER---GADVTVLEAG--------EAGGGAAGRNAGGI 50
Query: 302 RQQFSLRENIEMSLFGAE-----FLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDG--- 353
++ A+ + + G G L A+++G
Sbjct: 51 LAPWASPGGELEVRPLADLSLALWRELSEELGTGAG-------LRRRGLLDLAAREGLKG 103
Query: 354 AATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAV 413
A LE+ + G LL + P L D + L G DP L A+
Sbjct: 104 LAQLERLAAELEAAGEDAELLDAAEAAELEPALGPDFVCGG-LFDPTGGHLDPRLLTRAL 162
Query: 414 KKKAISLGAEYVRGEV-VDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAI 472
A LG + G V L R V V + G TI
Sbjct: 163 AAAAEELGVVIIEGGTPVTSLERDGRVV----------------GVETDGG---TIEADK 203
Query: 473 CVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRG----PGVNTPM 528
V+AAGA++G++A L +PLP+ P + E P G +
Sbjct: 204 VVLAAGAWAGELAATLGE-----------LPLPLRPVRGQALTTEPPEGLLADGLAPVVL 252
Query: 529 VIDTTGTYFRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEEL 588
V+D G Y R G G + G +P + + + + +
Sbjct: 253 VVDDGGGYIRPRGDGRLRVGGTDEEGGDDPSDPERE---DLVIAELLRVARALLPGLADA 309
Query: 589 KVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEF 648
+ AWAG D +IG N++ ATG GHG APA+GR +++LIL E
Sbjct: 310 GIEAAWAGLRPPTTPDGLPVIGRAAPLPNLYVATGHGGHGFTLAPALGRLLADLILGGE- 368
Query: 649 KTIDLSRFLLERVARRQ 665
+DL LL+R A +
Sbjct: 369 PELDLRPLLLDRFAPGR 385
Score = 45.3 bits (107), Expect = 8e-05
Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+D++IIGGG +G S AY++ E+ G V V++
Sbjct: 2 SMKMDVVIIGGGIVGLSAAYYLAER---GADVTVLEAG 36
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family includes
various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 102 bits (256), Expect = 2e-24
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 26/217 (11%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQF 305
D+++IGGG +G S AY + + G V +++R + A ++ + G L
Sbjct: 1 DVVVIGGGIVGLSTAYELARR---GLSVTLLER--------GDLASGASGRNAGLLHPGL 49
Query: 306 SL---RENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKNH 361
++L + R +I E D +F G L A + L +
Sbjct: 50 RKERAPLLARLALESRDLWR------ELIEELGIDCDFRRTGVLVLARDEAELDALRRLA 103
Query: 362 QLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISLG 421
+ LG LL E+L+ P L+ I G DP L A+ + A +LG
Sbjct: 104 AALRALGLPVELLDAEELRELEPGLS-PGIRGGLF-YPDGGHVDPARLLRALARAAEALG 161
Query: 422 AEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVV 458
E + G V L R V E +DGE + + VV
Sbjct: 162 VEILEGTEVTGLEREGGGVTVE-TEDGEIRA--DKVV 195
Score = 47.7 bits (114), Expect = 6e-06
Identities = 12/35 (34%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136
D+++IGGG +G S AY + + G V +++R
Sbjct: 1 DVVVIGGGIVGLSTAYELARR---GLSVTLLERGD 32
>gnl|CDD|236887 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 68.3 bits (168), Expect = 3e-12
Identities = 97/452 (21%), Positives = 154/452 (34%), Gaps = 114/452 (25%)
Query: 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARAS--TTLSVGG 300
D+++IG G++GS+ Y++ + G RV +DR F + + + G
Sbjct: 2 MRYDVIVIGLGSMGSAAGYYLARR---GLRVLGLDR-FMPPHQQGSSHGDTRIIRHAYGE 57
Query: 301 --------LRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQD 352
LR Q L +E G V+ D +F N
Sbjct: 58 GPAYVPLVLRAQ-ELWRELE-RESGEPLF----VRTGVLNLGPADSDFLAN--------- 102
Query: 353 GAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNT--DDIALACLGLEKEGWF-DPWLY 409
+ + H L E+ L +++ +FP IAL E +G F P L
Sbjct: 103 -SIRSARQHGLPHEV------LDAAEIRRRFPQFRLPDGYIAL----FEPDGGFLRPELA 151
Query: 410 LNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTIT 469
+ A + A GAE + E V + + V DG Y + +L
Sbjct: 152 IKAHLRLAREAGAELLFNEPVTAIEADGDGVTVT-TADGTYEA----------KKL---- 196
Query: 470 FAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVE--------PRKRY-------VY 514
V++AGA+ V +L L +PL RY +
Sbjct: 197 ----VVSAGAW---VKDLL---------PPLELPLTPVRQVLAWFQADGRYSEPNRFPAF 240
Query: 515 CFESPRG------PGVNTPMVIDTTGTYFRREGLGNYYICGKSPTPEQEPPVDNLDVDYE 568
+E P G P N P + +G + + +P++ + D
Sbjct: 241 IWEVPDGDQYYGFPAENGPGL-----------KIGKHNGGQEITSPDERDRFVTVAEDGA 289
Query: 569 YFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHG 628
P L + + A Y N DE+ II P + N+ A+G SGHG
Sbjct: 290 ELR----PFLRNYLPGVG--PCLRGAACTYT-NTPDEHFIIDTLPGHPNVLVASGCSGHG 342
Query: 629 IQQAPAIGRAVSELILDAEFKTIDLSRFLLER 660
+ A +G +++L D DLS F L R
Sbjct: 343 FKFASVLGEILADLAQDGTSD-FDLSPFSLSR 373
>gnl|CDD|233831 TIGR02352, thiamin_ThiO, glycine oxidase ThiO. This family
consists of the homotetrameric, FAD-dependent glycine
oxidase ThiO, from species such as Bacillus subtilis
that use glycine in thiamine biosynthesis. In general,
members of this family will not be found in species such
as E. coli that instead use tyrosine and the ThiH
protein [Biosynthesis of cofactors, prosthetic groups,
and carriers, Thiamine].
Length = 337
Score = 58.1 bits (141), Expect = 5e-09
Identities = 74/317 (23%), Positives = 116/317 (36%), Gaps = 53/317 (16%)
Query: 337 DVNFTPNGYLFCA-SQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALAC 395
D + G L A +D L + LQ G + L L+ P+L+ I A
Sbjct: 68 DTGYHQCGTLVVAFDEDDVEHLRQLADLQSATGMEVEWLSGRALRRLEPYLS-GGIRGA- 125
Query: 396 LGLEKEGWFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNE 455
+ + DP L A++K LG E + V + R +V G+ + +
Sbjct: 126 VFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQA--D 183
Query: 456 CVVRDEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYC 515
VV +AAGA++G+ +PLP+ P +
Sbjct: 184 QVV----------------LAAGAWAGE-----------------LLPLPLRPVRGQPLR 210
Query: 516 FESPRGPGVNTPM--VIDTTGTYF--RREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFN 571
E+P P +N P+ V+ Y RR+G + G + L E
Sbjct: 211 LEAPAVPLLNRPLRAVVYGRRVYIVPRRDG---RLVVGATMEESGFDTTPTLGGIKELLR 267
Query: 572 ENVWPHLAHRV-KAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQ 630
+ A+ + A +E ++ WAG D IG HP + ATG +GI
Sbjct: 268 D------AYTILPALKEARLLETWAGLRP-GTPDNLPYIGEHPEDRRLLIATGHYRNGIL 320
Query: 631 QAPAIGRAVSELILDAE 647
APA +++LIL E
Sbjct: 321 LAPATAEVIADLILGKE 337
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 58.4 bits (142), Expect = 5e-09
Identities = 61/308 (19%), Positives = 117/308 (37%), Gaps = 67/308 (21%)
Query: 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTT--------- 295
D++IIGGG +G++ AY + E VA++++ D A+ S++
Sbjct: 4 YDVVIIGGGIMGAATAYELSE-YEPDLSVALLEK-------EDGVAQESSSNNSGVIHAG 55
Query: 296 --LSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVI---GEDEPDVNFTPNGYLFCAS 350
+ G L+ + + NI + + + GE+E
Sbjct: 56 LYYTPGSLKAKLCVAGNINEFAICKQLGIPFINCGKLSVATGEEE--------------- 100
Query: 351 QDGAATLEKNHQLQKELGAKNV-LLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLY 409
LEK ++ K G ++ +L E++K P LN + A+A L + G DP
Sbjct: 101 ---VERLEKLYERGKANGVFDLEILDKEEIKELEPLLN--EGAVAALLVPSGGIVDPGEL 155
Query: 410 LNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTIT 469
A+ ++A + G E V + ++++ V +GE +T+
Sbjct: 156 TRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGE----------------ETLE 199
Query: 470 FAICVIAAGAYSGQVARMLKIGDKNQE-----QGFLFVPLPVEPRKRYVYCFESPRGPG- 523
+ AAG Y+ +A+M I + + + + + +Y +P PG
Sbjct: 200 AKFVINAAGLYADPLAQMAGIPEDFKIFPVRGEYLVLDNEVKALLRHKIYPVPNPGLPGL 259
Query: 524 --VNTPMV 529
+TP +
Sbjct: 260 GVHHTPTI 267
Score = 36.1 bits (84), Expect = 0.061
Identities = 12/34 (35%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
D++IIGGG +G++ AY + E VA++++
Sbjct: 4 YDVVIIGGGIMGAATAYELSE-YEPDLSVALLEK 36
>gnl|CDD|130444 TIGR01377, soxA_mon, sarcosine oxidase, monomeric form. Sarcosine
oxidase catalyzes the oxidative demethylation of
sarcosine to glycine. The reaction converts
tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The
enzyme is known in monomeric and heterotetrameric
(alpha,beta,gamma,delta) forms [Energy metabolism, Amino
acids and amines].
Length = 380
Score = 55.6 bits (134), Expect = 3e-08
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 1/64 (1%)
Query: 604 DENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDLSRFLLERVAR 663
DE+ +I LHP Y N+ GFSGHG + AP +G+ ++EL + + + DL+ F L R A
Sbjct: 318 DEHFVIDLHPKYDNVVIGAGFSGHGFKLAPVVGKILAELAMKLK-PSYDLAIFSLNRFAL 376
Query: 664 RQEA 667
+++A
Sbjct: 377 KKKA 380
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 54.2 bits (131), Expect = 2e-07
Identities = 67/261 (25%), Positives = 91/261 (34%), Gaps = 60/261 (22%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYA-RASTTLSVGGLR-- 302
D+++IGGG G+ IA + G +VA+V++ DL ST L GGLR
Sbjct: 14 DVIVIGGGITGAGIAR---DAAGRGLKVALVEKG-----DLASGTSSRSTKLIHGGLRYL 65
Query: 303 --QQFSL-RENI-EMSLFGAEFLRNIKHHC----------HVIGEDEPDVNFTPNGYLFC 348
+FSL RE + E E L I H D + LF
Sbjct: 66 EQYEFSLVREALAER-----EVLLRIAPHLVEPLPFLLPHLPGLRDAWLIRAG----LFL 116
Query: 349 ASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWL 408
++K L A VL P++ P L D L +G D
Sbjct: 117 YDHLAG--------IRKLLPASRVLD-PKEALPLEPALKKD--GLKGAFRYPDGVVDDAR 165
Query: 409 YLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRD-EKGELKT 467
+ A + A GAE + V+ LRR E V D E GE
Sbjct: 166 LVAANARDAAEHGAEILTYTRVESLRREGGVWGVE--------------VEDRETGETYE 211
Query: 468 ITFAICVIAAGAYSGQVARML 488
I V AAG + ++ M
Sbjct: 212 IRARAVVNAAGPWVDEILEMA 232
Score = 33.0 bits (76), Expect = 0.55
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR-DF 136
D+++IGGG G+ IA + G +VA+V++ D
Sbjct: 14 DVIVIGGGITGAGIAR---DAAGRGLKVALVEKGDL 46
>gnl|CDD|236106 PRK07818, PRK07818, dihydrolipoamide dehydrogenase; Reviewed.
Length = 466
Score = 38.5 bits (90), Expect = 0.009
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
Query: 425 VRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQV 484
V+G V FL ++N GY G + N V G +T+TF +IA G+
Sbjct: 95 VKG--VHFLMKKNKITEIHGY--GTFTDANTLEVDLNDGGTETVTFDNAIIATGS----S 146
Query: 485 ARML 488
R+L
Sbjct: 147 TRLL 150
>gnl|CDD|223364 COG0287, TyrA, Prephenate dehydrogenase [Amino acid transport and
metabolism].
Length = 279
Score = 38.1 bits (89), Expect = 0.011
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ I+G G +G S+A +KE G V ++ RD
Sbjct: 6 VGIVGLGLMGGSLARALKEA---GLVVRIIGRD 35
Score = 38.1 bits (89), Expect = 0.011
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ I+G G +G S+A +KE G V ++ RD
Sbjct: 6 VGIVGLGLMGGSLARALKEA---GLVVRIIGRD 35
>gnl|CDD|217105 pfam02558, ApbA, Ketopantoate reductase PanE/ApbA. This is a
family of 2-dehydropantoate 2-reductases also known as
ketopantoate reductases, EC:1.1.1.169. The reaction
catalyzed by this enzyme is: (R)-pantoate + NADP(+) <=>
2-dehydropantoate + NADPH. AbpA catalyzes the NADPH
reduction of ketopantoic acid to pantoic acid in the
alternative pyrimidine biosynthetic (APB) pathway. ApbA
and PanE are allelic. ApbA, the ketopantoate reductase
enzyme is required for the synthesis of thiamine via the
APB biosynthetic pathway.
Length = 150
Score = 36.1 bits (84), Expect = 0.017
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I I+G GA+GS + G V ++ R
Sbjct: 1 IAILGAGAVGSLYGARLARA---GHDVTLIARG 30
Score = 36.1 bits (84), Expect = 0.017
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I I+G GA+GS + G V ++ R
Sbjct: 1 IAILGAGAVGSLYGARLARA---GHDVTLIARG 30
>gnl|CDD|215257 PLN02464, PLN02464, glycerol-3-phosphate dehydrogenase.
Length = 627
Score = 37.1 bits (86), Expect = 0.036
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 9/58 (15%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR-DFTVNYDLDEYARASTTLSVGGLR 302
D+L++GGGA G+ +A + G RV +V+R DF+ + ST L GG+R
Sbjct: 73 DVLVVGGGATGAGVAL---DAATRGLRVGLVEREDFS-----SGTSSRSTKLIHGGVR 122
Score = 35.1 bits (81), Expect = 0.14
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
D+L++GGGA G+ +A + G RV +V+R+
Sbjct: 73 DVLVVGGGATGAGVAL---DAATRGLRVGLVERE 103
>gnl|CDD|235879 PRK06854, PRK06854, adenylylsulfate reductase subunit alpha;
Validated.
Length = 608
Score = 35.7 bits (83), Expect = 0.091
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
DILIIGGG G A+ KE +V +V++
Sbjct: 11 DTDILIIGGGMAGCGAAFEAKEW-APDLKVLIVEK 44
Score = 35.7 bits (83), Expect = 0.091
Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
DILIIGGG G A+ KE +V +V++
Sbjct: 11 DTDILIIGGGMAGCGAAFEAKEW-APDLKVLIVEK 44
>gnl|CDD|215691 pfam00070, Pyr_redox, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 82
Score = 32.2 bits (74), Expect = 0.13
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
++++GGG IG A + + G +V VV+R
Sbjct: 2 VVVVGGGYIGLEFASALAKL---GSKVTVVER 30
Score = 32.2 bits (74), Expect = 0.13
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
++++GGG IG A + + G +V VV+R
Sbjct: 2 VVVVGGGYIGLEFASALAKL---GSKVTVVER 30
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 34.7 bits (80), Expect = 0.14
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
D++I+G G GSS A + + G V V+++
Sbjct: 2 MEYDVVIVGAGPAGSSAARRLAKA---GLDVLVLEK 34
Score = 34.7 bits (80), Expect = 0.14
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
D++I+G G GSS A + + G V V+++
Sbjct: 2 MEYDVVIVGAGPAGSSAARRLAKA---GLDVLVLEK 34
Score = 29.7 bits (67), Expect = 4.9
Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 23/93 (24%)
Query: 404 FDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKG 463
FD WL ++A GAE G V + R ++ VV +
Sbjct: 97 FDKWL-----AERAEEAGAELYPGTRVTGVIREDD-----------------GVVVGVRA 134
Query: 464 ELKTITFAICVIAAGAYSGQVARMLKIGDKNQE 496
+ + VI A + +AR L + D+ E
Sbjct: 135 GDDEVRAKV-VIDADGVNSALARKLGLKDRKPE 166
>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase.
Length = 514
Score = 34.9 bits (80), Expect = 0.15
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 9/48 (18%)
Query: 88 ESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
E R G T D++I+G G GS++AY + + DG RV V++RD
Sbjct: 37 EERKDGAT------DVIIVGAGVGGSALAYALAK---DGRRVHVIERD 75
Score = 34.9 bits (80), Expect = 0.15
Identities = 19/48 (39%), Positives = 28/48 (58%), Gaps = 9/48 (18%)
Query: 232 ESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
E R G T D++I+G G GS++AY + + DG RV V++RD
Sbjct: 37 EERKDGAT------DVIIVGAGVGGSALAYALAK---DGRRVHVIERD 75
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and conversion].
Length = 562
Score = 34.6 bits (80), Expect = 0.19
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 11/57 (19%)
Query: 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
D+++IGGG G A E G +VA++ + R T + GG+
Sbjct: 7 FDVVVIGGGGAGLRAAIEAAEA---GLKVALLSKAPP--------KRGHTVAAQGGI 52
Score = 32.7 bits (75), Expect = 0.70
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136
D+++IGGG G A E G +VA++ +
Sbjct: 7 FDVVVIGGGGAGLRAAIEAAEA---GLKVALLSKAP 39
>gnl|CDD|233383 TIGR01373, soxB, sarcosine oxidase, beta subunit family,
heterotetrameric form. This model describes the beta
subunit of a family of known and putative
heterotetrameric sarcosine oxidases. Five operons of
such oxidases are found in Mesorhizobium loti and three
in Agrobacterium tumefaciens, a high enough copy number
to suggest that not all members are share the same
function. The model is designated as subfamily rather
than equivalog for this reason. Sarcosine oxidase
catalyzes the oxidative demethylation of sarcosine to
glycine. The reaction converts tetrahydrofolate to
5,10-methylene-tetrahydrofolate. The enzyme is known in
monomeric and heterotetrameric (alpha,beta,gamma,delta)
forms [Energy metabolism, Amino acids and amines].
Length = 407
Score = 34.0 bits (78), Expect = 0.25
Identities = 106/495 (21%), Positives = 171/495 (34%), Gaps = 142/495 (28%)
Query: 210 IKRAMRILKLDFQKLWRNVQDPESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLD 269
+K +R + ++ WR+ +P+ Y D++I+GGG G + AY++ K
Sbjct: 8 LKEGLRGHR-GWKPAWRS-PEPKPTY----------DVIIVGGGGHGLATAYYLA-KEHG 54
Query: 270 GCRVAVVD----------RDFTV---NYDLDEYAR---ASTTLSVGGLRQQFSLRENIEM 313
VAV++ R+ T+ NY E A + L GL Q + N+
Sbjct: 55 ITNVAVLEKGWLGGGNTGRNTTIVRSNYLYPESAELYEHAMKL-WEGLSQDLNY--NVMF 111
Query: 314 SLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQKELGAKNVL 373
S G L CH + DGA + + G L
Sbjct: 112 SQRGVLNL------CHSTAD----------------MDDGARRVNAM----RLNGVDAEL 145
Query: 374 LGPEQLKAKFPWLNTD-DIALACLG--LEKEGWFDPWLYLNAVKKKAISLGAEYVRG--- 427
L PEQ++ P L+ D +G L++ G + A++ G Y RG
Sbjct: 146 LSPEQVRRVIPILDFSPDARFPVVGGLLQRRG--------GTARHDAVAWG--YARGADR 195
Query: 428 ---------EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAG 478
EV F+RR +V G + + +K + V AG
Sbjct: 196 RGVDIIQNCEVTGFIRRDGGRV--IGVE------TTRGFIGAKK---------VGVAVAG 238
Query: 479 AYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVY--CFESPRGPGVNTPMVIDTTGTY 536
+S VA M GF LP+E + P P ++T ++ + Y
Sbjct: 239 -HSSVVAAM---------AGF---RLPIE---SHPLQALVSEPLKPIIDTVVMSNAVHFY 282
Query: 537 FRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKA-------FEELK 589
+ G I G +D Y P L H + A ++
Sbjct: 283 VSQSDKGELVIGG------------GIDGYNSYAQRGNLPTLEHVLAAILEMFPILSRVR 330
Query: 590 VSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFK 649
+ +W G D D + IIG P N++ G+ G + PA G + + A +
Sbjct: 331 MLRSWGGIVDVT-PDGSPIIGKTP-LPNLYLNCGWGTGGFKATPASGTVFAHTL--ARGE 386
Query: 650 TIDLSR-FLLERVAR 663
D++ F L+R
Sbjct: 387 PHDINAPFTLDRFHS 401
Score = 29.4 bits (66), Expect = 6.5
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 13/69 (18%)
Query: 66 IKRAMRILKLDFQKLWRNVQDPESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLD 125
+K +R + ++ WR+ +P+ Y D++I+GGG G + AY++ K
Sbjct: 8 LKEGLRGHR-GWKPAWRS-PEPKPTY----------DVIIVGGGGHGLATAYYLA-KEHG 54
Query: 126 GCRVAVVDR 134
VAV+++
Sbjct: 55 ITNVAVLEK 63
>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase
(MDR)/zinc-dependent alcohol dehydrogenase-like family.
The medium chain reductase/dehydrogenases
(MDR)/zinc-dependent alcohol dehydrogenase-like family,
which contains the zinc-dependent alcohol dehydrogenase
(ADH-Zn) and related proteins, is a diverse group of
proteins related to the first identified member, class I
mammalian ADH. MDRs display a broad range of activities
and are distinguished from the smaller short chain
dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
acids of the MDR). The MDR proteins have 2 domains: a
C-terminal NAD(P) binding-Rossmann fold domain of a
beta-alpha form and an N-terminal catalytic domain with
distant homology to GroES. The MDR group contains a
host of activities, including the founding alcohol
dehydrogenase (ADH) , quinone reductase, sorbitol
dehydrogenase, formaldehyde dehydrogenase, butanediol
DH, ketose reductase, cinnamyl reductase, and numerous
others. The zinc-dependent alcohol dehydrogenases (ADHs)
catalyze the NAD(P)(H)-dependent interconversion of
alcohols to aldehydes or ketones. ADH-like proteins
typically form dimers (typically higher plants, mammals)
or tetramers (yeast, bacteria), and generally have 2
tightly bound zinc atoms per subunit, a catalytic zinc
at the active site and a structural zinc in a lobe of
the catalytic domain. The active site zinc is
coordinated by a histidine, two cysteines, and a water
molecule. The second zinc seems to play a structural
role, affects subunit interactions, and is typically
coordinated by 4 cysteines. Other MDR members have only
a catalytic zinc, and some contain no coordinated zinc.
Length = 271
Score = 33.4 bits (77), Expect = 0.28
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+L++G G +G A K G RV V DR
Sbjct: 138 VLVLGAGGVGLLAAQLAKAA---GARVIVTDRS 167
Score = 33.4 bits (77), Expect = 0.28
Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+L++G G +G A K G RV V DR
Sbjct: 138 VLVLGAGGVGLLAAQLAKAA---GARVIVTDRS 167
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 33.6 bits (78), Expect = 0.30
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 133
D +IIGGG +G S A ++E G R+AV++
Sbjct: 4 DFVIIGGGIVGLSTAMQLQE-RYPGARIAVLE 34
Score = 33.6 bits (78), Expect = 0.30
Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 277
D +IIGGG +G S A ++E G R+AV++
Sbjct: 4 DFVIIGGGIVGLSTAMQLQE-RYPGARIAVLE 34
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 30.5 bits (70), Expect = 0.31
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 105 IIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
I+G G G AY + ++ G V V+++
Sbjct: 1 IVGAGLSGLVAAYLLAKR---GKDVLVLEK 27
Score = 30.5 bits (70), Expect = 0.31
Identities = 9/30 (30%), Positives = 16/30 (53%), Gaps = 3/30 (10%)
Query: 249 IIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
I+G G G AY + ++ G V V+++
Sbjct: 1 IVGAGLSGLVAAYLLAKR---GKDVLVLEK 27
>gnl|CDD|224805 COG1893, ApbA, Ketopantoate reductase [Coenzyme metabolism].
Length = 307
Score = 33.1 bits (76), Expect = 0.39
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
ILI+G GAIGS + + + G V ++ R
Sbjct: 3 ILILGAGAIGSLLGARLAKA---GHDVTLLVRS 32
Score = 33.1 bits (76), Expect = 0.39
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
ILI+G GAIGS + + + G V ++ R
Sbjct: 3 ILILGAGAIGSLLGARLAKA---GHDVTLLVRS 32
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family includes
members that bind FAD. This family includes the
flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 33.0 bits (76), Expect = 0.52
Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 11/56 (19%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
D+++IG G G + A E G +VAVV++ +T S GG+
Sbjct: 1 DVVVIGSGLAGLAAALEAAEA---GLKVAVVEKGQ--------PFGGATAWSSGGI 45
Score = 31.9 bits (73), Expect = 1.2
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136
D+++IG G G + A E G +VAVV++
Sbjct: 1 DVVVIGSGLAGLAAALEAAEA---GLKVAVVEKGQ 32
>gnl|CDD|236341 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
Validated.
Length = 405
Score = 32.8 bits (75), Expect = 0.63
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 133
VD+ IIGGG +G ++A +KE L R+AV++
Sbjct: 5 VDVAIIGGGMVGLALAAALKESDL---RIAVIE 34
Score = 32.8 bits (75), Expect = 0.63
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 277
VD+ IIGGG +G ++A +KE L R+AV++
Sbjct: 5 VDVAIIGGGMVGLALAAALKESDL---RIAVIE 34
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This model
represents a subfamily which includes geranylgeranyl
reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of cofactors,
prosthetic groups, and carriers, Chlorophyll and
bacteriochlorphyll].
Length = 295
Score = 32.7 bits (75), Expect = 0.63
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
D++++G G G+S AY + +K G RV ++++
Sbjct: 2 DVVVVGAGPAGASAAYRLADK---GLRVLLLEK 31
Score = 32.7 bits (75), Expect = 0.63
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
D++++G G G+S AY + +K G RV ++++
Sbjct: 2 DVVVVGAGPAGASAAYRLADK---GLRVLLLEK 31
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 32.4 bits (74), Expect = 0.69
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 7/59 (11%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLR 302
+D+ I+G G G ++A + G V +++R +L E R LS LR
Sbjct: 2 MLDVAIVGAGPAGLALALALARA---GLDVTLLERAPR---ELLERGRGI-ALSPNALR 53
Score = 28.9 bits (65), Expect = 8.5
Identities = 9/36 (25%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+D+ I+G G G ++A + G V +++R
Sbjct: 2 MLDVAIVGAGPAGLALALALARA---GLDVTLLERA 34
>gnl|CDD|237008 PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed.
Length = 267
Score = 32.0 bits (74), Expect = 0.73
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I IGGG + S+I + + + V D
Sbjct: 5 IGFIGGGNMASAIIGGLLASGVPAKDIIVSDPS 37
Score = 32.0 bits (74), Expect = 0.73
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I IGGG + S+I + + + V D
Sbjct: 5 IGFIGGGNMASAIIGGLLASGVPAKDIIVSDPS 37
>gnl|CDD|132407 TIGR03364, HpnW_proposed, FAD dependent oxidoreductase TIGR03364.
This clade of FAD dependent oxidoreductases (members of
the pfam01266 family) is syntenically associated with a
family of proposed phosphonatase-like enzymes
(TIGR03351) and is also found (less frequently) in
association with phosphonate transporter components. A
likely role for this enzyme involves the oxidative
deamination of an aminophosphonate differring slightly
from 2-aminoethylphosphonate, possibly
1-hydroxy-2-aminoethylphosphonate (see the comments for
TIGR03351). Many members of the larger FAD dependent
oxidoreductase family act as amino acid oxidative
deaminases.
Length = 365
Score = 32.3 bits (74), Expect = 0.76
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
D++I+G G +G + AY G V V++R
Sbjct: 2 DLIIVGAGILGLAHAY---AAARRGLSVTVIERS 32
Score = 32.3 bits (74), Expect = 0.76
Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
D++I+G G +G + AY G V V++R
Sbjct: 2 DLIIVGAGILGLAHAY---AAARRGLSVTVIERS 32
>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit;
Validated.
Length = 416
Score = 32.5 bits (75), Expect = 0.76
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
++++G G IG + A+++ + G V V+DR
Sbjct: 3 VVVLGSGVIGVTSAWYLAQ---AGHEVTVIDR 31
Score = 32.5 bits (75), Expect = 0.76
Identities = 10/32 (31%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
++++G G IG + A+++ + G V V+DR
Sbjct: 3 VVVLGSGVIGVTSAWYLAQ---AGHEVTVIDR 31
>gnl|CDD|237365 PRK13369, PRK13369, glycerol-3-phosphate dehydrogenase;
Provisional.
Length = 502
Score = 32.6 bits (75), Expect = 0.77
Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 9/58 (15%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYA-RASTTLSVGGLR 302
D+ +IGGG G+ IA ++ G +V + ++D DL + S L GGLR
Sbjct: 8 DLFVIGGGINGAGIA---RDAAGRGLKVLLCEKD-----DLAQGTSSRSGKLVHGGLR 57
>gnl|CDD|204705 pfam11663, Toxin_YhaV, Toxin with endonuclease activity YhaV. YhaV
causes reversible bacteriostasis and is part of a
toxin-antitoxin system in Escherichia coli along with
PrlF. The toxicity of YhaV is counteracted by PrlF by
the formation of a tight complex which binds to the
promoter of the prlF-yhaV operon. In vitro, YhaV also
has endonuclease activity.
Length = 141
Score = 31.2 bits (71), Expect = 0.78
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 48 AEAPSGYVDPAKTDEHYHIKRAMRILKLDFQKLWRNVQDPESRYQGNTLFPTH 100
A+ P GY K ILKL F + ++ PE R QGNTL P H
Sbjct: 24 AKDPEGYKKKPNA------KLLAAILKLIFDVIPQDPARPEYR-QGNTLGPEH 69
Score = 31.2 bits (71), Expect = 0.78
Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 192 AEAPSGYVDPAKTDEHYHIKRAMRILKLDFQKLWRNVQDPESRYQGNTLFPTH 244
A+ P GY K ILKL F + ++ PE R QGNTL P H
Sbjct: 24 AKDPEGYKKKPNA------KLLAAILKLIFDVIPQDPARPEYR-QGNTLGPEH 69
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 32.2 bits (73), Expect = 0.87
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNY 140
I+I+GGGA G S A ++ +L + ++ R+ +Y
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAA-EITLIGREPKYSY 37
Score = 32.2 bits (73), Expect = 0.87
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNY 284
I+I+GGGA G S A ++ +L + ++ R+ +Y
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAA-EITLIGREPKYSY 37
Score = 30.3 bits (68), Expect = 3.7
Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 6/54 (11%)
Query: 81 WRNVQDPESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
R +D E D++++G G IG A ++ G +V +++
Sbjct: 120 LRLREDAE---ALKGGAEPPKDVVVVGAGPIGLEAAEAAAKR---GKKVTLIEA 167
>gnl|CDD|223422 COG0345, ProC, Pyrroline-5-carboxylate reductase [Amino acid
transport and metabolism].
Length = 266
Score = 31.8 bits (73), Expect = 0.89
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 103 ILIIGGGAIGSSIAY-FIKEKVLDGCRVAVVDRD 135
I IG G +G +I +K L + V +R
Sbjct: 4 IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS 37
Score = 31.8 bits (73), Expect = 0.89
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 247 ILIIGGGAIGSSIAY-FIKEKVLDGCRVAVVDRD 279
I IG G +G +I +K L + V +R
Sbjct: 4 IGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRS 37
>gnl|CDD|236034 PRK07502, PRK07502, cyclohexadienyl dehydrogenase; Validated.
Length = 307
Score = 31.9 bits (73), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ +IG G IGSS+A I+ L G + DR
Sbjct: 9 VALIGIGLIGSSLARAIRRLGLAG-EIVGADRS 40
Score = 31.9 bits (73), Expect = 1.0
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ +IG G IGSS+A I+ L G + DR
Sbjct: 9 VALIGIGLIGSSLARAIRRLGLAG-EIVGADRS 40
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 30.2 bits (69), Expect = 1.2
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I+IIG G +G S+A ++E G V V+D+D
Sbjct: 1 IIIIGYGRVGRSLAEELRE---GGPDVVVIDKD 30
Score = 30.2 bits (69), Expect = 1.2
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I+IIG G +G S+A ++E G V V+D+D
Sbjct: 1 IIIIGYGRVGRSLAEELRE---GGPDVVVIDKD 30
>gnl|CDD|236847 PRK11101, glpA, sn-glycerol-3-phosphate dehydrogenase subunit A;
Provisional.
Length = 546
Score = 31.9 bits (73), Expect = 1.2
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 23/95 (24%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVG-- 299
D++IIGGGA G+ IA ++ L G R +V+R D+ A +T + G
Sbjct: 4 SQETDVIIIGGGATGAGIA---RDCALRGLRCILVERH-----DI---ATGATGRNHGLL 52
Query: 300 --GLR----QQFSLRENIEMSLFGAEFLRNIKHHC 328
G R S RE I + L+ I HC
Sbjct: 53 HSGARYAVTDAESARECISENQ----ILKRIARHC 83
Score = 31.9 bits (73), Expect = 1.2
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
D++IIGGGA G+ IA ++ L G R +V+R
Sbjct: 4 SQETDVIIIGGGATGAGIA---RDCALRGLRCILVERH 38
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 31.6 bits (72), Expect = 1.2
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYD--------LDEYARASTTLS 297
D++IIGGG G + A + G +VA+++R+ Y+ L E A
Sbjct: 1 DVVIIGGGPAGLAAAIRLARL---GLKVALIEREGGTCYNRGCLPKKLLLEVAEGLELAI 57
Query: 298 VGGLRQQFSLRENIEMSL 315
L ++ +E+ L
Sbjct: 58 GLALPEEVYKEFGVEVLL 75
Score = 30.0 bits (68), Expect = 3.4
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYD 141
D++IIGGG G + A + G +VA+++R+ Y+
Sbjct: 1 DVVIIGGGPAGLAAAIRLARL---GLKVALIEREGGTCYN 37
Score = 29.3 bits (66), Expect = 5.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
++++GGG IG +A + + G V VV+R
Sbjct: 145 VVVVGGGYIGLELAAALAKL---GKEVTVVER 173
Score = 29.3 bits (66), Expect = 5.7
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
++++GGG IG +A + + G V VV+R
Sbjct: 145 VVVVGGGYIGLELAAALAKL---GKEVTVVER 173
>gnl|CDD|217556 pfam03435, Saccharop_dh, Saccharopine dehydrogenase. This family
comprised of three structural domains that can not be
separated in the linear sequence. In some organisms this
enzyme is found as a bifunctional polypeptide with
lysine ketoglutarate reductase. The saccharopine
dehydrogenase can also function as a saccharopine
reductase.
Length = 380
Score = 31.5 bits (72), Expect = 1.4
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+LIIG G +G +A + + V DR
Sbjct: 1 VLIIGAGGVGQGVAPLLARH--GDLEITVADRS 31
Score = 31.5 bits (72), Expect = 1.4
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+LIIG G +G +A + + V DR
Sbjct: 1 VLIIGAGGVGQGVAPLLARH--GDLEITVADRS 31
>gnl|CDD|202367 pfam02737, 3HCDH_N, 3-hydroxyacyl-CoA dehydrogenase, NAD binding
domain. This family also includes lambda crystallin.
Length = 180
Score = 31.0 bits (71), Expect = 1.4
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 105 IIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+IG G +G+ IA G V +VD
Sbjct: 4 VIGAGTMGAGIAQVF---ARAGLEVVLVDIS 31
Score = 31.0 bits (71), Expect = 1.4
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 3/31 (9%)
Query: 249 IIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+IG G +G+ IA G V +VD
Sbjct: 4 VIGAGTMGAGIAQVF---ARAGLEVVLVDIS 31
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 31.1 bits (71), Expect = 1.9
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
H DI+++G G G S A + G +V +++R
Sbjct: 3 HSDIVVVGAGPAGLSFARSLAG---SGLKVTLIER 34
Score = 31.1 bits (71), Expect = 1.9
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
H DI+++G G G S A + G +V +++R
Sbjct: 3 HSDIVVVGAGPAGLSFARSLAG---SGLKVTLIER 34
>gnl|CDD|181001 PRK07494, PRK07494, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Provisional.
Length = 388
Score = 31.0 bits (71), Expect = 2.2
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
H DI +IGGG G + A + G VA+V
Sbjct: 5 KEHTDIAVIGGGPAGLAAAIALARA---GASVALVAP 38
Score = 31.0 bits (71), Expect = 2.2
Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
H DI +IGGG G + A + G VA+V
Sbjct: 5 KEHTDIAVIGGGPAGLAAAIALARA---GASVALVAP 38
>gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein.
Length = 347
Score = 30.8 bits (70), Expect = 2.3
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 5/66 (7%)
Query: 93 GNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQ 152
G+TLF V I+G GAIG +A ++ G ++ R +T + N
Sbjct: 154 GDTLFGKTV--FILGYGAIGIELAKRLRPF---GVKLLATRRSWTSEPEDGLLIPNGDVD 208
Query: 153 ESSNDK 158
+ ++K
Sbjct: 209 DLVDEK 214
Score = 28.9 bits (65), Expect = 9.6
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 237 GNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVN 283
G+TLF V I+G GAIG +A ++ G ++ R +T
Sbjct: 154 GDTLFGKTV--FILGYGAIGIELAKRLRPF---GVKLLATRRSWTSE 195
>gnl|CDD|178135 PLN02520, PLN02520, bifunctional 3-dehydroquinate
dehydratase/shikimate dehydrogenase.
Length = 529
Score = 30.9 bits (70), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136
++IG G G ++AY KEK G RV + +R +
Sbjct: 382 FVVIGAGGAGKALAYGAKEK---GARVVIANRTY 412
Score = 30.9 bits (70), Expect = 2.3
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 280
++IG G G ++AY KEK G RV + +R +
Sbjct: 382 FVVIGAGGAGKALAYGAKEK---GARVVIANRTY 412
>gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic
enzyme (ME), subgroup 2. Malic enzyme (ME), a member of
the amino acid dehydrogenase (DH)-like domain family,
catalyzes the oxidative decarboxylation of L-malate to
pyruvate in the presence of cations (typically Mg++ or
Mn++) with the concomitant reduction of cofactor NAD+ or
NADP+. ME has been found in all organisms, and plays
important roles in diverse metabolic pathways such as
photosynthesis and lipogenesis. This enzyme generally
forms homotetramers. The conversion of malate to
pyruvate by ME typically involves oxidation of malate to
produce oxaloacetate, followed by decarboxylation of
oxaloacetate to produce pyruvate and CO2. This
subfamily consists primarily of archaeal and bacterial
ME. Amino acid DH-like NAD(P)-binding domains are
members of the Rossmann fold superfamily and include
glutamate, leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DH, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 226
Score = 30.3 bits (69), Expect = 2.4
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 8/64 (12%)
Query: 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD--------RDFTVNYDLDEYARASTTL 296
V I+I G GA G +IA + + VVD R+ +N D +E A+ +
Sbjct: 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPE 85
Query: 297 SVGG 300
GG
Sbjct: 86 KTGG 89
Score = 29.5 bits (67), Expect = 4.1
Identities = 19/54 (35%), Positives = 24/54 (44%), Gaps = 1/54 (1%)
Query: 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQES 154
V I+I G GA G +IA + + VVD V Y+ ED NP E
Sbjct: 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSK-GVIYEGREDDLNPDKNEI 78
>gnl|CDD|235506 PRK05565, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase;
Provisional.
Length = 247
Score = 30.6 bits (70), Expect = 2.4
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 14/45 (31%)
Query: 105 IIGGGA--IGSSIAY-FIKEKVLDGCRVAVVDRDFTVNYDLDEDG 146
I+ G + IG +IA KE G +V + YD++E+
Sbjct: 9 IVTGASGGIGRAIAELLAKE----GAKVV-------IAYDINEEA 42
Score = 29.8 bits (68), Expect = 3.5
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 14/49 (28%)
Query: 249 IIGGGA--IGSSIAY-FIKEKVLDGCRVAVVDRDFTVNYDLDEYARAST 294
I+ G + IG +IA KE G +V + YD++E A
Sbjct: 9 IVTGASGGIGRAIAELLAKE----GAKVV-------IAYDINEEAAQEL 46
>gnl|CDD|236541 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 30.9 bits (71), Expect = 2.5
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 23/71 (32%)
Query: 65 HIKRAMRILKLDFQKLWRNVQDPESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVL 124
HI+ M F +L + V+ ++I+GGG IG +A ++++
Sbjct: 216 HIRAVMSE----FGRLEKPVKR----------------VMIVGGGNIGYYLAKLLEKE-- 253
Query: 125 DGCRVAVVDRD 135
G V +++RD
Sbjct: 254 -GYSVKLIERD 263
Score = 30.9 bits (71), Expect = 2.5
Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 23/71 (32%)
Query: 209 HIKRAMRILKLDFQKLWRNVQDPESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVL 268
HI+ M F +L + V+ ++I+GGG IG +A ++++
Sbjct: 216 HIRAVMSE----FGRLEKPVKR----------------VMIVGGGNIGYYLAKLLEKE-- 253
Query: 269 DGCRVAVVDRD 279
G V +++RD
Sbjct: 254 -GYSVKLIERD 263
>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism].
Length = 225
Score = 30.3 bits (69), Expect = 2.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I+IIG G +G S+A +E +G V ++DRD
Sbjct: 2 KIIIIGAGRVGRSVA---RELSEEGHNVVLIDRD 32
Score = 30.3 bits (69), Expect = 2.6
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I+IIG G +G S+A +E +G V ++DRD
Sbjct: 2 KIIIIGAGRVGRSVA---RELSEEGHNVVLIDRD 32
>gnl|CDD|216599 pfam01603, B56, Protein phosphatase 2A regulatory B subunit (B56
family). Protein phosphatase 2A (PP2A) is a major
intracellular protein phosphatase that regulates
multiple aspects of cell growth and metabolism. The
ability of this widely distributed heterotrimeric enzyme
to act on a diverse array of substrates is largely
controlled by the nature of its regulatory B subunit.
There are multiple families of B subunits (See also
pfam01240), this family is called the B56 family.
Length = 405
Score = 30.7 bits (70), Expect = 2.8
Identities = 10/24 (41%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 558 PPVDNLDVDYEY---FNENVWPHL 578
PP+ N +D + F E WPHL
Sbjct: 80 PPIPNPSLDPDDDEPFLEPSWPHL 103
>gnl|CDD|133443 cd01065, NAD_bind_Shikimate_DH, NAD(P) binding domain of Shikimate
dehydrogenase. Shikimate dehydrogenase (DH) is an amino
acid DH family member. Shikimate pathway links
metabolism of carbohydrates to de novo biosynthesis of
aromatic amino acids, quinones and folate. It is
essential in plants, bacteria, and fungi but absent in
mammals, thus making enzymes involved in this pathway
ideal targets for broad spectrum antibiotics and
herbicides. Shikimate DH catalyzes the reduction of
3-hydroshikimate to shikimate using the cofactor NADH.
Amino acid DH-like NAD(P)-binding domains are members of
the Rossmann fold superfamily and include glutamate,
leucine, and phenylalanine DHs, methylene
tetrahydrofolate DH, methylene-tetrahydromethanopterin
DH, methylene-tetrahydropholate DH/cyclohydrolase,
Shikimate DH-like proteins, malate oxidoreductases, and
glutamyl tRNA reductase. Amino acid DHs catalyze the
deamination of amino acids to keto acids with NAD(P)+ as
a cofactor. The NAD(P)-binding Rossmann fold superfamily
includes a wide variety of protein families including
NAD(P)- binding domains of alcohol DHs,
tyrosine-dependent oxidoreductases,
glyceraldehyde-3-phosphate DH, lactate/malate DHs,
formate/glycerate DHs, siroheme synthases,
6-phosphogluconate DHs, amino acid DHs, repressor rex,
NAD-binding potassium channel domain, CoA-binding, and
ornithine cyclodeaminase-like domains. These domains
have an alpha-beta-alpha configuration. NAD binding
involves numerous hydrogen and van der Waals contacts.
Length = 155
Score = 29.5 bits (67), Expect = 2.9
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+LI+G G ++AY + E L ++ +V+R
Sbjct: 22 VLILGAGGAARAVAYALAE--LGAAKIVIVNRT 52
Score = 29.5 bits (67), Expect = 2.9
Identities = 10/33 (30%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+LI+G G ++AY + E L ++ +V+R
Sbjct: 22 VLILGAGGAARAVAYALAE--LGAAKIVIVNRT 52
>gnl|CDD|224626 COG1712, COG1712, Predicted dinucleotide-utilizing enzyme [General
function prediction only].
Length = 255
Score = 30.4 bits (69), Expect = 2.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137
+ I+G GAIG + +++ +D VAV DRD
Sbjct: 3 VGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEE 37
Score = 30.4 bits (69), Expect = 2.9
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 281
+ I+G GAIG + +++ +D VAV DRD
Sbjct: 3 VGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEE 37
>gnl|CDD|180723 PRK06841, PRK06841, short chain dehydrogenase; Provisional.
Length = 255
Score = 30.0 bits (68), Expect = 3.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 104 LIIGGGA-IGSSIAYFIKEKVLDGCRVAVVDRDFTV 138
++ GG + IG +IA K G RVA++DR V
Sbjct: 19 VVTGGASGIGHAIAELFAAK---GARVALLDRSEDV 51
Score = 30.0 bits (68), Expect = 3.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Query: 248 LIIGGGA-IGSSIAYFIKEKVLDGCRVAVVDRDFTV 282
++ GG + IG +IA K G RVA++DR V
Sbjct: 19 VVTGGASGIGHAIAELFAAK---GARVALLDRSEDV 51
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 29.8 bits (68), Expect = 4.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 138
VD+ I+G G G + AY++ + G +VAV +R +
Sbjct: 26 VDVAIVGAGPSGLTAAYYLAKA---GLKVAVFERKLSF 60
Score = 29.8 bits (68), Expect = 4.3
Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 282
VD+ I+G G G + AY++ + G +VAV +R +
Sbjct: 26 VDVAIVGAGPSGLTAAYYLAKA---GLKVAVFERKLSF 60
>gnl|CDD|179902 PRK04965, PRK04965, NADH:flavorubredoxin oxidoreductase;
Provisional.
Length = 377
Score = 29.9 bits (68), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 11/36 (30%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCR----VAVVDR 134
+L++GGG IG+ +A +D CR V +VD
Sbjct: 144 VLVVGGGLIGTELA-------MDLCRAGKAVTLVDN 172
Score = 29.9 bits (68), Expect = 5.0
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 11/36 (30%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCR----VAVVDR 278
+L++GGG IG+ +A +D CR V +VD
Sbjct: 144 VLVVGGGLIGTELA-------MDLCRAGKAVTLVDN 172
>gnl|CDD|235821 PRK06522, PRK06522, 2-dehydropantoate 2-reductase; Reviewed.
Length = 304
Score = 29.8 bits (68), Expect = 5.0
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
I I+G GAIG + + G V +V R
Sbjct: 3 IAILGAGAIGGLFGAALAQA---GHDVTLVAR 31
Score = 29.8 bits (68), Expect = 5.0
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
I I+G GAIG + + G V +V R
Sbjct: 3 IAILGAGAIGGLFGAALAQA---GHDVTLVAR 31
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 30.0 bits (68), Expect = 5.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
DIL+IGGG G A KE+ RV ++++
Sbjct: 11 DILVIGGGTAGPMAAIKAKER-NPALRVLLLEK 42
Score = 30.0 bits (68), Expect = 5.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
DIL+IGGG G A KE+ RV ++++
Sbjct: 11 DILVIGGGTAGPMAAIKAKER-NPALRVLLLEK 42
>gnl|CDD|237343 PRK13304, PRK13304, L-aspartate dehydrogenase; Reviewed.
Length = 265
Score = 29.6 bits (67), Expect = 5.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136
I I+G GAI S I I ++ A DR+
Sbjct: 4 IGIVGCGAIASLITKAILSGRINAELYAFYDRNL 37
Score = 29.6 bits (67), Expect = 5.1
Identities = 12/34 (35%), Positives = 16/34 (47%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 280
I I+G GAI S I I ++ A DR+
Sbjct: 4 IGIVGCGAIASLITKAILSGRINAELYAFYDRNL 37
>gnl|CDD|107083 PHA01813, PHA01813, hypothetical protein.
Length = 58
Score = 26.8 bits (59), Expect = 5.9
Identities = 9/34 (26%), Positives = 18/34 (52%)
Query: 570 FNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYF 603
+ + + H H++ FE+L + YY++N F
Sbjct: 11 YCDEIKGHFPHQISMFEDLYDAKVVYSYYEYNLF 44
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 29.8 bits (68), Expect = 5.9
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136
D+++IG G G A K+ G +VA++++
Sbjct: 3 KYDVIVIGAGPAGYV-AARRAAKL--GKKVALIEKGP 36
Score = 29.8 bits (68), Expect = 5.9
Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 280
D+++IG G G A K+ G +VA++++
Sbjct: 3 KYDVIVIGAGPAGYV-AARRAAKL--GKKVALIEKGP 36
>gnl|CDD|235739 PRK06200, PRK06200, 2,3-dihydroxy-2,3-dihydrophenylpropionate
dehydrogenase; Provisional.
Length = 263
Score = 29.2 bits (66), Expect = 6.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 103 ILIIGGGA-IGSSI-AYFIKEKVLDGCRVAVVDRD 135
LI GGG+ IG ++ F+ E G RVAV++R
Sbjct: 9 ALITGGGSGIGRALVERFLAE----GARVAVLERS 39
Score = 29.2 bits (66), Expect = 6.0
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 247 ILIIGGGA-IGSSI-AYFIKEKVLDGCRVAVVDRD 279
LI GGG+ IG ++ F+ E G RVAV++R
Sbjct: 9 ALITGGGSGIGRALVERFLAE----GARVAVLERS 39
>gnl|CDD|181359 PRK08293, PRK08293, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 287
Score = 29.5 bits (67), Expect = 6.2
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ + G G +GS IA+ + G V + D
Sbjct: 6 VTVAGAGVLGSQIAF---QTAFHGFDVTIYDIS 35
Score = 29.5 bits (67), Expect = 6.2
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ + G G +GS IA+ + G V + D
Sbjct: 6 VTVAGAGVLGSQIAF---QTAFHGFDVTIYDIS 35
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 29.4 bits (67), Expect = 6.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVV 132
+ +D++I+GGG G+++A + G VA++
Sbjct: 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALI 35
Score = 29.4 bits (67), Expect = 6.7
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVV 276
+ +D++I+GGG G+++A + G VA++
Sbjct: 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALI 35
>gnl|CDD|212491 cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally
diverse family of oxidoreductases that have a single
domain with a structurally conserved Rossmann fold
(alpha/beta folding pattern with a central beta-sheet),
an NAD(P)(H)-binding region, and a structurally diverse
C-terminal region. Classical SDRs are typically about
250 residues long, while extended SDRs are approximately
350 residues. Sequence identity between different SDR
enzymes are typically in the 15-30% range, but the
enzymes share the Rossmann fold NAD-binding motif and
characteristic NAD-binding and catalytic sequence
patterns. These enzymes catalyze a wide range of
activities including the metabolism of steroids,
cofactors, carbohydrates, lipids, aromatic compounds,
and amino acids, and act in redox sensing. Classical
SDRs have an TGXXX[AG]XG cofactor binding motif and a
YXXXK active site motif, with the Tyr residue of the
active site motif serving as a critical catalytic
residue (Tyr-151, human prostaglandin dehydrogenase
(PGDH) numbering). In addition to the Tyr and Lys, there
is often an upstream Ser (Ser-138, PGDH numbering)
and/or an Asn (Asn-107, PGDH numbering) contributing to
the active site; while substrate binding is in the
C-terminal region, which determines specificity. The
standard reaction mechanism is a 4-pro-S hydride
transfer and proton relay involving the conserved Tyr
and Lys, a water molecule stabilized by Asn, and
nicotinamide. Extended SDRs have additional elements in
the C-terminal region, and typically have a TGXXGXXG
cofactor binding motif. Complex (multidomain) SDRs such
as ketoreductase domains of fatty acid synthase have a
GGXGXXG NAD(P)-binding motif and an altered active site
motif (YXXXN). Fungal type ketoacyl reductases have a
TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs
have lost catalytic activity and/or have an unusual
NAD(P)-binding motif and missing or unusual active site
residues. Reactions catalyzed within the SDR family
include isomerization, decarboxylation, epimerization,
C=N bond reduction, dehydratase activity,
dehalogenation, Enoyl-CoA reduction, and
carbonyl-alcohol oxidoreduction.
Length = 234
Score = 29.2 bits (66), Expect = 6.7
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 103 ILIIGGGA-IGSSIAYFIKEKVLDGCRVAVVDRD 135
L+ G + IG +IA + +G +V + DR+
Sbjct: 1 ALVTGASSGIGRAIA---RRLAREGAKVVLADRN 31
Score = 29.2 bits (66), Expect = 6.7
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 247 ILIIGGGA-IGSSIAYFIKEKVLDGCRVAVVDRD 279
L+ G + IG +IA + +G +V + DR+
Sbjct: 1 ALVTGASSGIGRAIA---RRLAREGAKVVLADRN 31
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 29.6 bits (67), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 95 TLFPTHVDILIIGGGAIG 112
T+ P+ D+L++G GA G
Sbjct: 4 TILPSQFDVLVVGSGAAG 21
Score = 29.6 bits (67), Expect = 7.1
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 239 TLFPTHVDILIIGGGAIG 256
T+ P+ D+L++G GA G
Sbjct: 4 TILPSQFDVLVVGSGAAG 21
>gnl|CDD|133248 cd05148, PTKc_Srm_Brk, Catalytic domain of the Protein Tyrosine
Kinases, Srm and Brk. Protein Tyrosine Kinase (PTK)
family; Src-related kinase lacking C-terminal regulatory
tyrosine and N-terminal myristylation sites (Srm) and
breast tumor kinase (Brk, also called protein tyrosine
kinase 6); catalytic (c) domains. The PTKc family is
part of a larger superfamily that includes the catalytic
domains of other kinases such as protein
serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Srm and
Brk are a member of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases in general contain an N-terminal SH4 domain with
a myristoylation site, followed by SH3 and SH2 domains,
a tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr; they are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Srm and
Brk however, lack the N-terminal myristylation sites.
Src proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Brk has been found to be overexpressed
in a majority of breast tumors.
Length = 261
Score = 28.9 bits (65), Expect = 7.2
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 345 YLFCASQDGAATLEKNHQLQKELGAKNVLLG 375
+ C +G A LE+ + + ++L A+N+L+G
Sbjct: 108 DMACQVAEGMAYLEEQNSIHRDLAARNILVG 138
>gnl|CDD|183829 PRK12921, PRK12921, 2-dehydropantoate 2-reductase; Provisional.
Length = 305
Score = 29.1 bits (66), Expect = 7.2
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
I ++G GA+G + + E D V + R
Sbjct: 3 IAVVGAGAVGGTFGGRLLEAGRD---VTFLVR 31
Score = 29.1 bits (66), Expect = 7.2
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
I ++G GA+G + + E D V + R
Sbjct: 3 IAVVGAGAVGGTFGGRLLEAGRD---VTFLVR 31
>gnl|CDD|132164 TIGR03120, one_C_mch, methenyltetrahydromethanopterin
cyclohydrolase. Members of this protein family are the
enzyme methenyltetrahydromethanopterin cyclohydrolase, a
key enzyme for tetrahydromethanopterin (H4MPT)-linked C1
transfer metabolism [Central intermediary metabolism,
One-carbon metabolism].
Length = 312
Score = 29.2 bits (66), Expect = 7.3
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 3/39 (7%)
Query: 368 GAKNVLLGPEQLK-AKFPWLN--TDDIALACLGLEKEGW 403
G V + P + K+P + TD +ACLG +K GW
Sbjct: 57 GLAEVTIVPFPIDGLKWPAVQVTTDHPVIACLGSQKAGW 95
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts PRPP
to RuBP, flavoprotein [Carbohydrate transport and
metabolism].
Length = 262
Score = 29.2 bits (66), Expect = 7.4
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 138
D++I+G G G + AY++ + G +VA+ +R +
Sbjct: 29 LESDVIIVGAGPSGLTAAYYLAKA---GLKVAIFERKLSF 65
Score = 29.2 bits (66), Expect = 7.4
Identities = 11/40 (27%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 282
D++I+G G G + AY++ + G +VA+ +R +
Sbjct: 29 LESDVIIVGAGPSGLTAAYYLAKA---GLKVAIFERKLSF 65
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 29.1 bits (66), Expect = 8.0
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 138
D+++IG G G A + G +VA+V++ +
Sbjct: 4 EYDVVVIGAGPAGYVAAIRAAQL---GLKVALVEKGERL 39
Score = 29.1 bits (66), Expect = 8.0
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 282
D+++IG G G A + G +VA+V++ +
Sbjct: 4 EYDVVVIGAGPAGYVAAIRAAQL---GLKVALVEKGERL 39
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest light
for photosynthesis, and dissipate excess light energy
absorbed by the antenna pigments. The cyclisation of
lycopene (psi, psi-carotene) is a key branch point in
the pathway of carotenoid biosynthesis. Two types of
cyclic end groups are found in higher plant carotenoids:
the beta and epsilon rings. Carotenoids with two beta
rings are ubiquitous, and those with one beta and one
epsilon ring are common; however, carotenoids with two
epsilon rings are rare.
Length = 374
Score = 29.2 bits (66), Expect = 8.1
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 12/58 (20%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR----DFTVNY-------DLDEYARA 292
D++I+G G G +A +++ G RV ++D F N+ DL A
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARP-GLRVLLIDAGPGPPFPNNHTWSDEFEDLGPLAPC 57
>gnl|CDD|235675 PRK06025, PRK06025, acetyl-CoA acetyltransferase; Provisional.
Length = 417
Score = 29.0 bits (65), Expect = 8.5
Identities = 26/98 (26%), Positives = 40/98 (40%), Gaps = 10/98 (10%)
Query: 263 IKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTL-SVGGLRQQFSLRENIEMSLFGAEFL 321
IKE D V V D +V D +E+ R TT + L+ F+ + + G +
Sbjct: 191 IKEGRFDKSLVPVYRDDGSVALDHEEFPRPQTTAEGLAALKPAFTAIADYPLDDKGTTY- 249
Query: 322 RNIKHHCHVIGEDEPDVNFTPNGYLFCASQ--DGAATL 357
R + I + PD+ + +S DGAA L
Sbjct: 250 RGL------INQKYPDLEIKHVHHAGNSSGVVDGAAAL 281
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 29.2 bits (65), Expect = 8.8
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
Query: 404 FDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQV 440
DPWL ++A GA+++ G VD L R N+V
Sbjct: 110 LDPWLM-----EQAEQAGAQFIPGVRVDALVREGNKV 141
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 28.6 bits (64), Expect = 9.0
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
D++I+G G G + AY++ +K G +VA+++R
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKK---GLKVAIIER 48
Score = 28.6 bits (64), Expect = 9.0
Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 3/33 (9%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
D++I+G G G + AY++ +K G +VA+++R
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKK---GLKVAIIER 48
>gnl|CDD|219070 pfam06516, NUP, Purine nucleoside permease (NUP). This family
consists of several purine nucleoside permease from both
bacteria and fungi.
Length = 315
Score = 28.8 bits (65), Expect = 9.2
Identities = 23/79 (29%), Positives = 32/79 (40%), Gaps = 18/79 (22%)
Query: 593 AWAGYYDFNYFDEN-AIIGLHPSYHNIHFATGFS------GHGIQQAPAIGRAVSELILD 645
W D D N + GL P Y ++H + G G A A +V L LD
Sbjct: 17 PWLERLDL---DHNITVPGLSPDYPDVHCNADYGVCQLVTGMGEINAAA---SVMALGLD 70
Query: 646 AEFKTIDLSR--FLLERVA 662
F DL++ FL+ +A
Sbjct: 71 PRF---DLTKTYFLVAGIA 86
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 28.9 bits (65), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVV 132
D+L++GGG G++ A + K G R A+V
Sbjct: 212 PYDVLVVGGGPAGAAAAIYAARK---GLRTAMV 241
Score = 28.9 bits (65), Expect = 9.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVV 276
D+L++GGG G++ A + K G R A+V
Sbjct: 212 PYDVLVVGGGPAGAAAAIYAARK---GLRTAMV 241
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 28.8 bits (65), Expect = 10.0
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 133
D+ I+GGG +G ++A +K+ G R+A+++
Sbjct: 19 YDVAIVGGGIVGLTLAAALKDS---GLRIALIE 48
Score = 28.8 bits (65), Expect = 10.0
Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Query: 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 277
D+ I+GGG +G ++A +K+ G R+A+++
Sbjct: 19 YDVAIVGGGIVGLTLAAALKDS---GLRIALIE 48
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.136 0.410
Gapped
Lambda K H
0.267 0.0851 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,652,905
Number of extensions: 3599025
Number of successful extensions: 3862
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3849
Number of HSP's successfully gapped: 188
Length of query: 673
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 570
Effective length of database: 6,369,140
Effective search space: 3630409800
Effective search space used: 3630409800
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.4 bits)