RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy10285
(673 letters)
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 387 bits (995), Expect = e-129
Identities = 80/455 (17%), Positives = 155/455 (34%), Gaps = 65/455 (14%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
D +++G G +G + AY++K G V VVD + S+
Sbjct: 21 MPRFDYVVVGAGVVGLAAAYYLKV--WSGGSVLVVDAGHA-------PGSGDSGRSMAAF 71
Query: 302 RQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNH 361
R FS N ++ + + D+ +GYLF ++ +E+
Sbjct: 72 RTFFSSTMNRLVAGSTVRLFEDAQ-------RGGEDLGLVKSGYLFVYDRERWREVEEPL 124
Query: 362 QLQKELGAKNVLLGPEQLKAKFPW------------LNTDDIALACLGLEKEGWFDPWLY 409
+ E G +++ PE+L+ + L D+ + + G+ D
Sbjct: 125 REAGEEGRDYLIIPPEELERRLGMNTRVSDGEEAEVLGVGDVE-GAVLIRSAGFLDAEKV 183
Query: 410 LNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTIT 469
++ ++A G E++ G V + + + + G +
Sbjct: 184 VDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDGTRVEVG 243
Query: 470 FAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGP------- 522
+ V+AAG +S ++ L I P+KR V+ +
Sbjct: 244 EKL-VVAAGVWSNRLLNPLGI------------DTFSRPKKRMVFRVSASTEGLRRIMRE 290
Query: 523 -----GVNTPMVIDTTGTYFRREGLGNYYICGKSPTPEQEPPVD-NLDVDYEYFNENVWP 576
P++I R + S + ++ + + Y++ + P
Sbjct: 291 GDLAGAGAPPLIILPKRVLVRPAPREGSFWVQLSDNLGRPFALEEDPQPEEHYYSLAILP 350
Query: 577 HLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIG 636
L+ + F++ S WAG+YD + FD N ++ P I A G SG GI ++ +IG
Sbjct: 351 ILSLYLPQFQDAYPSGGWAGHYDIS-FDANPVVF-EPWESGIVVAAGTSGSGIMKSDSIG 408
Query: 637 RAVSELILDAEFKT--------IDLSRFLLERVAR 663
R + + L E + R +
Sbjct: 409 RVAAAVALGMESVELYGGVEMPVKWMGLEGRRYEQ 443
Score = 53.6 bits (129), Expect = 1e-07
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNY 140
D +++G G +G + AY++K G V VVD
Sbjct: 21 MPRFDYVVVGAGVVGLAAAYYLKV--WSGGSVLVVDAGHAPGS 61
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET:
FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A*
3nyf_A* 3sm8_A*
Length = 381
Score = 306 bits (786), Expect = 2e-98
Identities = 77/428 (17%), Positives = 139/428 (32%), Gaps = 61/428 (14%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
P D L+IG G G+S Y++ RV V++R+ + ST S
Sbjct: 7 PIEADYLVIGAGIAGASTGYWLSAH----GRVVVLERE-------AQPGYHSTGRSAAHY 55
Query: 302 RQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNH 361
+ + ++ F N +P + D L + +
Sbjct: 56 TVAYGTPQVRALTAASRAFFDNPP------AGFCEHPLLSPRPEMVVDFSDDPEELRRQY 109
Query: 362 QLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISLG 421
+ K L + LL EQ + P L D + A D +
Sbjct: 110 ESGKALVPQMRLLDAEQACSIVPVLRRDKVFGATYD-PTGADIDTDALHQGYLRGIRRNQ 168
Query: 422 AEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYS 481
+ + +RR + VR + G + A+ V AAGA+
Sbjct: 169 GQVLCNHEALEIRRVDGAWE----------------VRCDAGSYRA---AVLVNAAGAWC 209
Query: 482 GQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRG-PGVNTPMVIDTTGTYFRRE 540
+A + + PL ++P++R + F P G + PM++ +++ +
Sbjct: 210 DAIAGLAGV-----------RPLGLQPKRRSAFIFAPPPGIDCHDWPMLVSLDESFYLKP 258
Query: 541 GLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDF 600
+ P PV+ DV E + +L + + WAG F
Sbjct: 259 D-AGMLLGS----PANADPVEAHDVQPEQLDIATGMYLIEEATTLTIRRPEHTWAGLRSF 313
Query: 601 NYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAE------FKTIDLS 654
D + + G + + G+GIQ + A+G A + LI +D +
Sbjct: 314 V-ADGDLVAGYAANAEGFFWVAAQGGYGIQTSAAMGEASAALIRHQPLPAHLREHGLDEA 372
Query: 655 RFLLERVA 662
R++
Sbjct: 373 MLSPRRLS 380
Score = 48.0 bits (115), Expect = 5e-06
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
P D L+IG G G+S Y++ RV V++R+
Sbjct: 7 PIEADYLVIGAGIAGASTGYWLSAH----GRVVVLERE 40
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor
2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus
SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A*
1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A*
3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A*
1l9d_A* 1zov_A*
Length = 389
Score = 219 bits (561), Expect = 2e-65
Identities = 82/440 (18%), Positives = 169/440 (38%), Gaps = 62/440 (14%)
Query: 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLR 302
TH D++++G G++G + Y + ++ G + +VD + S +R
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQ---GVKTLLVDAFDPPH------TNGSHHGDTRIIR 52
Query: 303 QQFS-LRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVN-FTPNGYLFCASQDGAATLEKN 360
+ RE + ++L E + E E FT G L + +A + +
Sbjct: 53 HAYGEGREYVPLALRSQELWYEL--------EKETHHKIFTKTGVLVFGPKGESAFVAET 104
Query: 361 HQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISL 420
+ KE LL +++ ++P + + A G + A ++ A +
Sbjct: 105 MEAAKEHSLTVDLLEGDEINKRWPGITVPENYNAIF-EPNSGVLFSENCIRAYRELAEAR 163
Query: 421 GAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480
GA+ + V+ + V + G + T +++ GA+
Sbjct: 164 GAKVLTHTRVEDFDISPDSVK----------------IETANG---SYTADKLIVSMGAW 204
Query: 481 SGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRG---PGVNTPMVI--DTTGT 535
+ ++ L + +P++P ++ V FES ++ P + G
Sbjct: 205 NSKLLSKL------------NLDIPLQPYRQVVGFFESDESKYSNDIDFPGFMVEVPNGI 252
Query: 536 YFRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAF---EELKVSN 592
Y+ G + T Q+ D ++ ++ + E+ +L ++ + ++
Sbjct: 253 YYGFPSFGGCGLKLGYHTFGQKIDPDTINREFGVYPED-ESNLRAFLEEYMPGANGELKR 311
Query: 593 AWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTID 652
Y DE+ II LHP + N+ A GFSGHG + + +G +S+L L + D
Sbjct: 312 GAVCMYTKTL-DEHFIIDLHPEHSNVVIAAGFSGHGFKFSSGVGEVLSQLALTGK-TEHD 369
Query: 653 LSRFLLERVARRQEAREVNI 672
+S F + R A ++ ++ I
Sbjct: 370 ISIFSINRPALKESLQKTTI 389
Score = 46.2 bits (110), Expect = 2e-05
Identities = 10/36 (27%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Query: 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
TH D++++G G++G + Y + ++ G + +VD
Sbjct: 2 THFDVIVVGAGSMGMAAGYQLAKQ---GVKTLLVDA 34
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 215 bits (551), Expect = 6e-64
Identities = 105/425 (24%), Positives = 164/425 (38%), Gaps = 59/425 (13%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
P +I++IGGG +G +IA+ + ++ G V V+++ ST G+
Sbjct: 3 PEKSEIVVIGGGIVGVTIAHELAKR---GEEVTVIEKR--------FIGSGSTFRCGTGI 51
Query: 302 RQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATLEKN 360
RQQF+ N+ + E + +E +F GYLF + T ++N
Sbjct: 52 RQQFNDEANVRVMKRSVELWKKY--------SEEYGFSFKQTGYLFLLYDDEEVKTFKRN 103
Query: 361 HQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISL 420
++Q + G L+ PE+ K P L+ ++ A +G DP+ A KA
Sbjct: 104 IEIQNKFGVPTKLITPEEAKEIVPLLDISEVIAASW-NPTDGKADPFEATTAFAVKAKEY 162
Query: 421 GAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480
GA+ + V NN++ V+ KG +KT V A A+
Sbjct: 163 GAKLLEYTEVKGFLIENNEIK---------------GVKTNKGIIKTGIV---VNATNAW 204
Query: 481 SGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVID--TTGTYFR 538
+ + M I K +P+EP K P G PMVI Y
Sbjct: 205 ANLINAMAGIKTK----------IPIEPYKHQ-AVITQPIKRGTINPMVISFKYGHAYLT 253
Query: 539 REGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYY 598
+ G P +L YE+ V + + A + L + WAGYY
Sbjct: 254 QTFHGGIIGGIGYE----IGPTYDLTPTYEFL-REVSYYFTKIIPALKNLLILRTWAGYY 308
Query: 599 DFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDLSRFLL 658
D N IG ++ + A GFSGHG APA+G V+ELI + + + +
Sbjct: 309 AKTP-DSNPAIGRIEELNDYYIAAGFSGHGFMMAPAVGEMVAELITKGK-TKLPVEWYDP 366
Query: 659 ERVAR 663
R R
Sbjct: 367 YRFER 371
Score = 45.6 bits (109), Expect = 3e-05
Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
P +I++IGGG +G +IA+ + ++ G V V+++
Sbjct: 3 PEKSEIVVIGGGIVGVTIAHELAKR---GEEVTVIEKR 37
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 204 bits (521), Expect = 2e-59
Identities = 71/427 (16%), Positives = 128/427 (29%), Gaps = 65/427 (15%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
D +I+GGG G + AYF+ K VAV+++ A + + +
Sbjct: 19 KKSYDAIIVGGGGHGLATAYFLA-KNHGITNVAVLEKG--------WLAGGNMARNTTII 69
Query: 302 RQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVN--FTPNGYLFCA-SQDGAATLE 358
R + E+ + + + ++ + + F+ G L A +
Sbjct: 70 RSNYLWDESAGIYEKSLKLWEQL--------PEDLEYDFLFSQRGVLNLAHTLGDVRESV 121
Query: 359 KNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIA----LACLGLEKEGWFDPWLYLNAVK 414
+ + K G L P Q+K P +NT D + + G A
Sbjct: 122 RRVEANKLNGVDAEWLDPSQVKEACPIINTSDDIRYPVMGATWQPRAGIAKHDHVAWAFA 181
Query: 415 KKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICV 474
+KA +G + ++ V + +V V+ +G +
Sbjct: 182 RKANEMGVDIIQNCEVTGFIKDGEKVT---------------GVKTTRGTIHA---GKVA 223
Query: 475 IAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDTTG 534
+A +S +A M G LP++ E V+ +V+
Sbjct: 224 LAGAGHSSVLAEMA---------G---FELPIQSHPLQALVSE--LFEPVHPTVVMSNHI 269
Query: 535 -TYFRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNA 593
Y + G + + + F V
Sbjct: 270 HVYVSQAHKGELVMGAGID----SYNGYGQRGAFHVI-QEQMAAAVELFPIFARAHVLRT 324
Query: 594 WAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDL 653
W G D D + II P N++ G+ G + P G ++ I + E
Sbjct: 325 WGGIVDTTM-DASPIISKTP-IQNLYVNCGWGTGGFKGTPGAGFTLAHTIANDE-PHELN 381
Query: 654 SRFLLER 660
F LER
Sbjct: 382 KPFSLER 388
Score = 43.8 bits (104), Expect = 1e-04
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
D +I+GGG G + AYF+ K VAV+++
Sbjct: 19 KKSYDAIIVGGGGHGLATAYFLA-KNHGITNVAVLEKG 55
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 203 bits (519), Expect = 2e-59
Identities = 69/446 (15%), Positives = 129/446 (28%), Gaps = 71/446 (15%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
D++++GGG +G + A+ + E+ G RV V++R N T+ +
Sbjct: 2 TESYDVVVVGGGPVGLATAWQVAER---GHRVLVLERHTFFN------ENGGTSGAERHW 52
Query: 302 RQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVN-FTPNGYLFCASQDGAAT---L 357
R Q++ + ++L R + E + G L+ D +
Sbjct: 53 RLQYTQEDLFRLTLETLPLWRAL--------ESRCERRLIHEIGSLWFGDTDVVTNEGQI 104
Query: 358 EKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKA 417
+ +L + L ++ +F + L G D L A+ A
Sbjct: 105 SGTAAMMDKLSVRYEWLKATDIERRFGFRGLPRDYEGFLQ-PDGGTIDVRGTLAALFTLA 163
Query: 418 ISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAA 477
+ GA GE V L + V V ++G T V+A
Sbjct: 164 QAAGATLRAGETVTELVPDADGVS----------------VTTDRG---TYRAGKVVLAC 204
Query: 478 GAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFE-------SPRGPGVNTPMVI 530
G Y+ + L L + + + +P P
Sbjct: 205 GPYTNDLLEPL------------GARLAYSVYEMAIAAYRQATPVTEAPFWFAFQQPTPQ 252
Query: 531 DTT---GTYFRREGLGNYYICGK--SPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAF 585
DT G G + CG P P D + + L +
Sbjct: 253 DTNLFYGFGHNPWAPGEFVRCGPDFEVDPLDHPSAATGVADRRQMDR-LSGWLRDHLPTV 311
Query: 586 E-ELKVSNAWAGYYDFNYFDENAIIGLHPSY--HNIHFATGFSGHGIQQAPAIGRAVSEL 642
+ + ++ + + +G H +G + P GR ++L
Sbjct: 312 DPDPVRTSTCLAVLPTDP-ERQFFLGTARDLMTHGEKLVVYGAGWAFKFVPLFGRICADL 370
Query: 643 ILDAEFKTIDLSRFLLERVARRQEAR 668
++ D+SR +
Sbjct: 371 AVEDS-TAYDISRLAPQSALLEHHHH 395
Score = 47.1 bits (112), Expect = 1e-05
Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
D++++GGG +G + A+ + E+ G RV V++R
Sbjct: 2 TESYDVVVVGGGPVGLATAWQVAER---GHRVLVLERH 36
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 203 bits (517), Expect = 1e-58
Identities = 75/449 (16%), Positives = 127/449 (28%), Gaps = 73/449 (16%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
+LI+G G G+S A + + V V+D + A ++ +
Sbjct: 4 TKSSSLLIVGAGTWGTSTALHLARR--GYTNVTVLDPYPVPS------AISAGNDVNKVI 55
Query: 302 RQ------QFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAA 355
+ + N ++ +N + + G L A
Sbjct: 56 SSGQYSNNKDEIEVNEILAEEAFNGWKN---------DPLFKPYYHDTGLLMSACSQEGL 106
Query: 356 TLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGL---EKEGWFDPWLYLNA 412
E L PEQ + P G GW L A
Sbjct: 107 DRLGVRVRPGEDPNLVELTRPEQFRKLAPEGVLQGDFPGWKGYFARSGAGWAHARNALVA 166
Query: 413 VKKKAISLGAEYVRGEV---VDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTIT 469
++A +G ++V G V L NN V G+
Sbjct: 167 AAREAQRMGVKFVTGTPQGRVVTLIFENNDV---------------KGAVTADGK--IWR 209
Query: 470 FAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMV 529
+ AGA +GQ P ++ R N P++
Sbjct: 210 AERTFLCAGASAGQFLDFKNQ------------LRPTAWTLVHIALKPEERALYKNIPVI 257
Query: 530 ID-TTGTYFRR-EGLGNYYICGKSP----------TPEQEPPVDNLDVDYEYFNENVWPH 577
+ G +F E G IC + P P + + E V
Sbjct: 258 FNIERGFFFEPDEERGEIKICDEHPGYTNMVQSADGTMMSIPFEKTQIPKE-AETRVRAL 316
Query: 578 LAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGR 637
L + + S A + + + +I HP YH++ G SG G + P+IG
Sbjct: 317 LKETMPQLADRPFSFARICWCA-DTANREFLIDRHPQYHSLVLGCGASGRGFKYLPSIGN 375
Query: 638 AVSELILD-AEFKTIDLSRFLLERVARRQ 665
+ + + K +L ++ + A R
Sbjct: 376 LIVDAMEGKVPQKIHELIKWNPDIAANRN 404
Score = 46.4 bits (110), Expect = 2e-05
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 13/64 (20%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSND 157
+LI+G G G+S A + + V V+D P + ND
Sbjct: 4 TKSSSLLIVGAGTWGTSTALHLARR--GYTNVTVLDPYPV-----------PSAISAGND 50
Query: 158 KDRI 161
+++
Sbjct: 51 VNKV 54
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 194 bits (496), Expect = 3e-56
Identities = 69/423 (16%), Positives = 131/423 (30%), Gaps = 64/423 (15%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQF 305
D++IIG G++G++ Y+ G V + D + S +R +
Sbjct: 4 DLIIIGSGSVGAAAGYYATRA---GLNVLMTDAHMPPH------QHGSHHGDTRLIRHAY 54
Query: 306 SLREN-IEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQ 364
E + + L + +E D F +G + D + L
Sbjct: 55 GEGEKYVPLVLRAQMLWDELSR------HNEDDPIFVRSGVINLGPAD-STFLANVAHSA 107
Query: 365 KELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEY 424
++ L + + A++P + D + G+ L + + A G
Sbjct: 108 EQWQLNVEKLDAQGIMARWPEIRVPDNYIGLF-ETDSGFLRSELAIKTWIQLAKEAGCAQ 166
Query: 425 VRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQV 484
+ V +R ++ V + G ++ AG + +
Sbjct: 167 LFNCPVTAIRHDDDGV----------------TIETADG---EYQAKKAIVCAGTWVKDL 207
Query: 485 ARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPM-----VIDTTGTYFRR 539
L PV+P ++ +++ V + Y+
Sbjct: 208 LPEL----------------PVQPVRKVFAWYQADGRYSVKNKFPAFTGELPNGDQYYGF 251
Query: 540 EGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNE--NVWPHLAHRVKAFEELKVSNAWAGY 597
+ GK + D E ++ +P L + + A
Sbjct: 252 PAENDALKIGKHNGGQVIHSADERVPFAEVVSDGSEAFPFLRNVLPGIGCCLY--GAACT 309
Query: 598 YDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDLSRFL 657
YD + DE+ II P + N TG SGHG + A +G ++ D + DL+ F
Sbjct: 310 YDNS-PDEDFIIDTLPGHDNTLLITGLSGHGFKFASVLGEIAADFAQDKK-SDFDLTPFR 367
Query: 658 LER 660
L R
Sbjct: 368 LSR 370
Score = 45.0 bits (107), Expect = 5e-05
Identities = 10/34 (29%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
D++IIG G++G++ Y+ G V + D
Sbjct: 4 DLIIIGSGSVGAAAGYYATRA---GLNVLMTDAH 34
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 183 bits (466), Expect = 6e-52
Identities = 81/424 (19%), Positives = 141/424 (33%), Gaps = 67/424 (15%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
H + ++IGGG IGS+IAY++ ++ A+ + +T+ + G L
Sbjct: 15 KRHYEAVVIGGGIIGSAIAYYLAKE---NKNTALFESGTM--------GGRTTSAAAGML 63
Query: 302 RQQFSLREN---IEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATL 357
E + ++ + + + D+ G A S++ L
Sbjct: 64 GAHAECEERDAFFDFAMHSQRLYKGLGEE--LYALSGVDIRQHNGGMFKLAFSEEDVLQL 121
Query: 358 EKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKA 417
+ L E++ K P+ + D ++ + +P+ A K A
Sbjct: 122 RQMDDLDSV-----SWYSKEEVLEKEPYASGD--IFGASFIQDDVHVEPYFVCKAYVKAA 174
Query: 418 ISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIA 476
LGAE V+ R+ + ++ G + V+A
Sbjct: 175 KMLGAEIFEHTPVLHV--ERDGEA---------------LFIKTPSG---DVWANHVVVA 214
Query: 477 AGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDTTGTY 536
+G +SG + L + P K + P + Y
Sbjct: 215 SGVWSGMFFKQL------------GLNNAFLPVKGECLSVWNDDIP---LTKTLYHDHCY 259
Query: 537 FRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAG 596
G + G + +P + D E+V + A + +KV WAG
Sbjct: 260 IVPRKSGRL-VVGAT----MKPGDWSETPDLGGL-ESVMKKAKTMLPAIQNMKVDRFWAG 313
Query: 597 YYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDLSRF 656
D IG HP I FA G +GI APA G +S+LI++ E L F
Sbjct: 314 LRPGT-KDGKPYIGRHPEDSRILFAAGHFRNGILLAPATGALISDLIMNKEVNQDWLHAF 372
Query: 657 LLER 660
++R
Sbjct: 373 RIDR 376
Score = 51.8 bits (125), Expect = 4e-07
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
H + ++IGGG IGS+IAY++ ++ A+ +
Sbjct: 15 KRHYEAVVIGGGIIGSAIAYYLAKE---NKNTALFESG 49
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 104 bits (261), Expect = 2e-23
Identities = 78/459 (16%), Positives = 151/459 (32%), Gaps = 90/459 (19%)
Query: 242 PTHVDILIIGGGAIGSSIAY-FIKEKVLDGCRVAVVDRD-FTVNYDLDEYARASTTLSVG 299
+ I+IIG G +G+++A + + + V+D+ +T
Sbjct: 2 ASTPRIVIIGAGIVGTNLADELVTRGWNN---ITVLDQGPLN--------MPGGSTSHAP 50
Query: 300 GLRQQFSLRENI-EMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCA-SQDGAATL 357
GL Q + + + + + E L ++ ++ F G L A ++ A L
Sbjct: 51 GLVFQTNPSKTMASFAKYTVEKLLSL--------TEDGVSCFNQVGGLEVATTETRLADL 102
Query: 358 EKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKA 417
++ G + LL P + + +P L+ ++I L + +G + + K+
Sbjct: 103 KRKLGYAAAWGIEGRLLSPAECQELYPLLDGENILGG-LHVPSDGLASAARAVQLLIKRT 161
Query: 418 ISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAA 477
S G Y V + + +V V+ G I I V A
Sbjct: 162 ESAGVTYRGSTTVTGIEQSGGRVT---------------GVQTADG---VIPADIVVSCA 203
Query: 478 GAYSGQVARMLKIGDKNQEQGFLFVPL-PVEPRKRYVYCFESP---------RGPGVNTP 527
G + ++ M+ + VPL P+ + Y +P + G P
Sbjct: 204 GFWGAKIGAMIGMA----------VPLLPLA----HQYVKTTPVPAQQGRNDQPNGARLP 249
Query: 528 MVIDT-TGTYFRREG----LGNY------------YICGKSPTPEQEPPVDNLDVDYEYF 570
++ Y+R G +G+Y E P LD E F
Sbjct: 250 ILRHQDQDLYYREHGDRYGIGSYAHRPMPVDVDTLGAYAPETVSEHHMP-SRLDFTLEDF 308
Query: 571 NENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQ 630
W + A + ++ + + G + F D ++G + A +
Sbjct: 309 -LPAWEATKQLLPALADSEIEDGFNGIFSFTP-DGGPLLGESKELDGFYVAEAV---WVT 363
Query: 631 QAPAIGRAVSELILDAEFKTIDLSRFLLERVARRQEARE 669
+ + +A++EL+ DL + R Q E
Sbjct: 364 HSAGVAKAMAELLTTGR-SETDLGECDITRFEDVQLTPE 401
Score = 39.7 bits (93), Expect = 0.004
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 98 PTHVDILIIGGGAIGSSIAY 117
+ I+IIG G +G+++A
Sbjct: 2 ASTPRIVIIGAGIVGTNLAD 21
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 94.8 bits (234), Expect = 7e-21
Identities = 56/421 (13%), Positives = 102/421 (24%), Gaps = 69/421 (16%)
Query: 237 GNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTL 296
G DI++IG G +G++ A+++++ + G + +V+ T+
Sbjct: 29 GQHFTEEAFDIVVIGAGRMGAACAFYLRQ-LAPGRSLLLVEEG-------GLPNEEGATI 80
Query: 297 SVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAAT 356
G+ + E + + L +
Sbjct: 81 LAPGVWTAQDIPAGQE------AQAEWTREQLLGALGSGKTLEVEDRPLLHLLPAGEGSG 134
Query: 357 LEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKK 416
L + LL P A+ P D A + P ++
Sbjct: 135 LTPTLDALADFPEALALLDP----ARLPVARVDPRA---------LTYRPGSLALLAAQQ 181
Query: 417 AISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIA 476
AI GA + + + V H +V E +++ ++A
Sbjct: 182 AIGQGAGLLLNTRAELVP---GGVRLHRLTVTNTHQ----IVVHETRQIRAGVI---IVA 231
Query: 477 AGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDTTGTY 536
AGA + L + R + G V+ +G
Sbjct: 232 AGAAGPALVEQG-----------LGLHTRHGRAYRQFPRLDLLSGAQ---TPVLRASGLT 277
Query: 537 FRREGLGNY-YICGKSPTPEQEPPVDNLD--VDYEYFNENVW---------PHLAHRVKA 584
R + G P P V E + P LA
Sbjct: 278 LRPQNGGYTLVPAIHHRDPHGYHPAGGSLTGVPTGLRRELLEDLVGLMDAVPALAGEGLE 337
Query: 585 FEEL--KVSNAWAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSEL 642
V AW D +H G A +++
Sbjct: 338 LGRSSADVPGAWLALPGGRP-DAPPQAEELAP--GLHLLLGGPLAD-TLGLAAAHELAQR 393
Query: 643 I 643
+
Sbjct: 394 V 394
Score = 40.8 bits (94), Expect = 0.001
Identities = 10/43 (23%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 93 GNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
G DI++IG G +G++ A+++++ + G + +V+
Sbjct: 29 GQHFTEEAFDIVVIGAGRMGAACAFYLRQ-LAPGRSLLLVEEG 70
>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET:
FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A*
2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A*
1kif_A* 1an9_A* 1evi_A*
Length = 351
Score = 60.1 bits (145), Expect = 7e-10
Identities = 54/413 (13%), Positives = 112/413 (27%), Gaps = 91/413 (22%)
Query: 245 VDILIIGGGAIGSSIAYFIKEK---VLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
+ +++IG G IG S A I E+ VL + V FT D A G
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLTTTDVAA--------GLW 52
Query: 302 RQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNH 361
+ S N + + + + + H H + + LF H
Sbjct: 53 QPYLSDPNNPQEADWSQQTFDYLLSHVHSPNAENLGLFLISGYNLF-------------H 99
Query: 362 QLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW-FDPWLYLNAVKKKAISL 420
+ + K+ +LG +L + D G + YL + ++
Sbjct: 100 EAIPDPSWKDTVLGFRKLTPREL----DMFPDYGYGWFHTSLILEGKNYLQWLTERLTER 155
Query: 421 GAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAY 480
G ++ + +V F E+ + V G +
Sbjct: 156 GVKFFQRKVESF------------------------------EEVAREGADVIVNCTGVW 185
Query: 481 SGQVARMLKIGDKNQEQGFLFVPLPVEPRKRYVYCFESPRGP---GVNTPMVIDTTGTYF 537
+G + D ++P + + ++P + P Y
Sbjct: 186 AGALQ-----RDP-----------LLQPGRGQIMKVDAPWMKHFILTHDPERGIYNSPYI 229
Query: 538 --RREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWA 595
+ + G + + + + + +W + ++
Sbjct: 230 IPGTQTV----TLGGI----FQLGNWSELNNIQ-DHNTIWEGCCRLEPTLKNARIIGERT 280
Query: 596 GYYDF--NYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDA 646
G+ E + PS + G G+G+ ++L
Sbjct: 281 GFRPVRPQIRLEREQLRTGPSNTEVIHNYGHGGYGLTIHWGCALEAAKLFGRI 333
Score = 37.7 bits (87), Expect = 0.008
Identities = 14/43 (32%), Positives = 20/43 (46%), Gaps = 3/43 (6%)
Query: 101 VDILIIGGGAIGSSIAYFIKEK---VLDGCRVAVVDRDFTVNY 140
+ +++IG G IG S A I E+ VL + V FT
Sbjct: 1 MRVVVIGAGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT 43
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 2e-09
Identities = 102/655 (15%), Positives = 190/655 (29%), Gaps = 188/655 (28%)
Query: 54 YVDPAKTDEHYHIKRAMRILKLDFQKLW--RNVQDPESRYQGNTLFPTHVDILIIGGGAI 111
++D + Y K + + + F + ++VQD + L +D +I+ A+
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQD----MPKSILSKEEIDHIIMSKDAV 61
Query: 112 GSSIAYFIKEKVLDGCRVAV---VDRDFTVNYD-----LDEDGSNPGDQES--SNDKDRI 161
S + +L V V+ +NY + + P +DR+
Sbjct: 62 --SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 162 STSGQPTQESKVSDPHKALKETTNRYSFNDAE-------APSGYVDPAKT--------DE 206
Q + VS LK A+ SG KT
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG-----KTWVALDVCLS- 173
Query: 207 HYHIKRAMRILKLDFQKLW---RNVQDPESRY-QGNTLF----------PTHVDILIIGG 252
Y ++ M DF+ W +N PE+ L H + +
Sbjct: 174 -YKVQCKM-----DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI 227
Query: 253 GAIGSSIAYFIKEK-------VLD-------------GCRVAVVDRDFTVNYDLDEYARA 292
+I + + +K K VL C++ + R V L
Sbjct: 228 HSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT- 286
Query: 293 STTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEP----DVNFTPNGYLFC 348
T +S+ + E SL ++L +D P N P
Sbjct: 287 -THISLDHHSMTLTPDEV--KSLL-LKYL-------DCRPQDLPREVLTTN--P---RRL 330
Query: 349 AS-----QDGAATLE-----KNHQLQKELGAKNVLLGPEQLK------AKFPWLNTDD-- 390
+ +DG AT + +L + + +L P + + + FP
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP----PSAH 386
Query: 391 IALACLGLEKEGWF-----DPWLYLNAVKKKAISLGAEYVRGEVV-------DFLRRRNN 438
I L L WF D + +N + K SL + + + + + N
Sbjct: 387 IPTILLSLI---WFDVIKSDVMVVVNKLHKY--SLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 439 --QVH---YEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQ-VARMLKIGD 492
+H + Y+ + ++ + Y + LK +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQ----------------YFYSHIGHHLKNIE 485
Query: 493 KNQE-QGF--LFVPLP-VEPRKRYVYCFESPRGPGVNTPMVIDTTGTYFRREGLGNY--Y 546
+ F +F+ +E + R+ + G +NT + L Y Y
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNT--LQQ----------LKFYKPY 533
Query: 547 ICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFE--ELKVSNAWAGYYD 599
IC P E+ L F + +L K + + + ++
Sbjct: 534 ICDNDPKYER------LVNAILDFLPKIEENL-ICSKYTDLLRIALMAEDEAIFE 581
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Length = 369
Score = 56.4 bits (137), Expect = 1e-08
Identities = 46/269 (17%), Positives = 82/269 (30%), Gaps = 64/269 (23%)
Query: 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV-------N-------YDLDE 288
T +D ++IG G +G +IA + G V V + + N
Sbjct: 3 TDIDCIVIGAGVVGLAIARALAAG---GHEVLVAEAAEGIGTGTSSRNSEVIHAGIY--- 56
Query: 289 YARASTTLSVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNG-YLF 347
Y S L+ + +R G L C V G +
Sbjct: 57 YPADS-------LKARLCVR--------GKHLLYEY---C-----AARGVPHQRLGKLIV 93
Query: 348 CASQDGAATLEKNHQLQKELGAKNV-LLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDP 406
S A+ L+ + G ++ + + P L+ A L G D
Sbjct: 94 ATSDAEASQLDSIARRAGANGVDDLQHIDGAAARRLEPALH----CTAALVSPSTGIVDS 149
Query: 407 WLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELK 466
+ A + A S GA+ V + R R + E
Sbjct: 150 HALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGF---------------ELDFGGAEPM 194
Query: 467 TITFAICVIAAGAYSGQVARMLKIGDKNQ 495
T++ + + AAG ++ +AR ++ ++
Sbjct: 195 TLSCRVLINAAGLHAPGLARRIEGIPRDS 223
Score = 38.7 bits (91), Expect = 0.005
Identities = 11/36 (30%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
T +D ++IG G +G +IA + G V V +
Sbjct: 3 TDIDCIVIGAGVVGLAIARALAAG---GHEVLVAEA 35
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional
protein MNMC; rossmann fold, oxidase, methyl
transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli}
PDB: 3awi_A*
Length = 676
Score = 50.7 bits (120), Expect = 1e-06
Identities = 51/479 (10%), Positives = 119/479 (24%), Gaps = 89/479 (18%)
Query: 224 LWRNVQDPESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVN 283
+ + + P S N + + IIGGG + ++ + T+
Sbjct: 252 MEQTLPLPCSAPWFNRTGSSKREAAIIGGGIASALLSL----------ALLRRGWQVTLY 301
Query: 284 YDLDEYARASTTLSVGGLRQQFSLREN--IEMSLFGAEFLRNIKHHCHVIGEDEPDVNFT 341
+ A ++ G L S + F R +
Sbjct: 302 CADEAPALGASGNRQGALYPLLSKHDEALNRFFSNAFTFARRFYDQLP------VKFDHD 355
Query: 342 PNGYLFCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKE 401
G + + V + ++ + + +
Sbjct: 356 WCGVTQLGWDEKSQHKIAQMLSMDLPAELAVAVEANAVEQITGV----ATNCSGITYPQG 411
Query: 402 GWFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDE 461
GW P V + A G + + R+++ D +
Sbjct: 412 GWLCPAELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQAT---------- 461
Query: 462 KGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFLFVPLPVEPRK-RYVYCFESPR 520
++ V+A G + ++ + + +P E + + V C++
Sbjct: 462 --------HSVVVLANGHQISRFSQTSTLPVYSVAGQVSHIPTTPELAELKQVLCYD--- 510
Query: 521 GPGVNTPMVIDTTGTYFRREGLGNYYICGKSPTPEQEPPVDNLDVDYEYFNENVWPHLAH 580
G TP +Y+ + ++ N + F + W
Sbjct: 511 --GYLTPQNPANQHHCIG----ASYHRGSEDTAYSEDDQQQNRQRLIDCFPQAQWAKEVD 564
Query: 581 RVKAFEELKVSNAWAGYYDFNYFDENAIIGL-----------------------HPSYHN 617
+ A G D ++G P + +
Sbjct: 565 -------VSDKEARCGV-RCATRDHLPMVGNVPDYEATLVEYASLAEQKDEAVSAPVFDD 616
Query: 618 IHFATGFSGHGIQQAPAIGRAVSELILD-------AEFKTIDLSRFLLERVARRQEARE 669
+ G+ AP ++ + D + ++ +R + R + +A +
Sbjct: 617 LFMFAALGSRGLCSAPLCAEILAAQMSDEPIPMDASTLAALNPNRLWV-RKLLKGKAVK 674
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional
protein MNMC; structural genomics, PSI-biology; HET:
FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Length = 689
Score = 48.3 bits (114), Expect = 7e-06
Identities = 62/453 (13%), Positives = 127/453 (28%), Gaps = 73/453 (16%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQF 305
DI IIGGG + + A ++ + G V + D + A+ ++ G L
Sbjct: 266 DIAIIGGGIVSALTALALQRR---GAVVTLYCAD-------AQPAQGASGNRQGALYPLL 315
Query: 306 SLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNHQLQK 365
+ + + + F + F + + + E + G A D + + +
Sbjct: 316 NGKNDALETFFTSAFTFARRQYDQ-LLEQGIAFDHQWCGVSQLAFDDKSRGKIEKMLHTQ 374
Query: 366 ELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYV 425
+ EQL D A + GW P +A+ A G
Sbjct: 375 WPVEFAEAMSREQLSELAGL----DCAHDGIHYPAGGWLCPSDLTHALMMLAQQNGMTCH 430
Query: 426 RGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGAYSGQVA 485
+ L+R ++Q + + + A ++A G +
Sbjct: 431 YQHELQRLKRIDSQWQ----------------LTFGQSQ-AAKHHATVILATGHRLPEWE 473
Query: 486 RMLKIG-DKNQEQGFLFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDTTGTYFRREGLGN 544
+ + + Q PV + + V C++ P +Y R
Sbjct: 474 QTHHLPLSAVRGQVSHIPTTPVLSQLQQVLCYDGYLTPVNPANQHHCIGASYQRG----- 528
Query: 545 YYICGKSPTPEQEPPVDNLDVDYEYFNENVWPH----------------------LAHRV 582
+ +N + + WP + V
Sbjct: 529 ----DIATDFRLTEQQENRERLLRCLPQVSWPQQVDVSDNQARCGVRCAIRDHLPMVGAV 584
Query: 583 KAFEELKVSNA-WAGYYDFNYFDENAIIGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSE 641
+ + E I + P + + G G+ AP + ++
Sbjct: 585 PDYAATLAQYQDLSRRIQHGGESEVNDIAVAPVWPELFMVGGLGSRGLCSAPLVAEILAA 644
Query: 642 LI------LDAEF-KTIDLSRFLLERVARRQEA 667
+ LDA+ ++ +RF + R +
Sbjct: 645 QMFGEPLPLDAKTLAALNPNRFWI-RKLLKGRP 676
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium
toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A*
1c0k_A*
Length = 363
Score = 44.7 bits (105), Expect = 6e-05
Identities = 24/192 (12%), Positives = 52/192 (27%), Gaps = 29/192 (15%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
+ ++++G G IG S A + K G V ++ RD + +A +
Sbjct: 4 HSQKRVVVLGSGVIGLSSALILARK---GYSVHILARDLPEDVSSQTFASPWAGANWTPF 60
Query: 302 RQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNH 361
+ + + H + G +N
Sbjct: 61 MTLTDGPRQAKWEESTFKKWVELVPTGHAMW------------------LKGTRRFAQNE 102
Query: 362 QLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW-FDPWLYLNAVKKKAISL 420
K++ + L + + +G+ + Y + ++ L
Sbjct: 103 DGLLGHWYKDITPN-------YRPLPSSECPPGAIGVTYDTLSVHAPKYCQYLARELQKL 155
Query: 421 GAEYVRGEVVDF 432
GA + R V
Sbjct: 156 GATFERRTVTSL 167
Score = 43.9 bits (103), Expect = 1e-04
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT 137
+ ++++G G IG S A + K G V ++ RD
Sbjct: 4 HSQKRVVVLGSGVIGLSSALILARK---GYSVHILARDLP 40
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.0 bits (98), Expect = 8e-04
Identities = 71/419 (16%), Positives = 125/419 (29%), Gaps = 143/419 (34%)
Query: 286 LDEYARASTTLSVGGLRQQFSLRENIEMSLFGA-----EFLRNIKHHC-HVIGEDEPDVN 339
+D Y+ TLS G L + S F A +F + + +DEP
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTA---SFFIASQLQEQFNKILPEPTEGFAADDEPT-- 55
Query: 340 FTPNG----YL-FCASQDGAATLEKNHQLQKELGAKNVLLGPEQLKAKFPWLNTDDI-AL 393
TP +L + +S +E + Q + L + + + L +DI AL
Sbjct: 56 -TPAELVGKFLGYVSSL-----VEPSKVGQFDQVLNLCL---TEFENCY--LEGNDIHAL 104
Query: 394 AC-LGLEKEGWFDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVH----YEGYDDG 448
A L E + VK K + + Y+ ++ +R ++ + +G
Sbjct: 105 AAKLLQENDT--------TLVKTKEL-IKN-YITARIM--AKRPFDKKSNSALFRAVGEG 152
Query: 449 EYH---------SVNECVVRDEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGF 499
+ ++ EL+ + + Y V ++K + +
Sbjct: 153 NAQLVAIFGGQGNTDDYF-----EELRDL-YQT-------YHVLVGDLIKFSAETLSE-- 197
Query: 500 LFVPLPVEPRKRYVYCFESPRGPGVNTPMVIDTTGTYFRREGLGNYYICGKSPTPEQEPP 559
+ ++ K + +G ++ E L N P P
Sbjct: 198 -LIRTTLDAEKVF------TQG--------LNI------LEWLEN---------PSNTPD 227
Query: 560 VDNLD---VDYEYFNENVWP-----HLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGL 611
D L + P LAH Y ++G
Sbjct: 228 KDYLLSIPIS--------CPLIGVIQLAH----------------YVVTAK-----LLGF 258
Query: 612 HPSYHNIHFATGFSGH--GIQQAPAIGRAVS-ELILDAEFKTIDLSRFLLERVARRQEA 667
P + G +GH G+ A AI S E + K I + F + R EA
Sbjct: 259 TPGELRSYLK-GATGHSQGLVTAVAIAETDSWESFFVSVRKAITVL-FFI--GVRCYEA 313
Score = 29.6 bits (66), Expect = 4.4
Identities = 44/249 (17%), Positives = 70/249 (28%), Gaps = 101/249 (40%)
Query: 457 VVRDEKGELKTITFAICVIAAGAYSGQVAR-----ML--KIGDKNQEQGFLFVPLPVEPR 509
+V + L TI F G G+ R M+ I D + +F +
Sbjct: 1664 IVINNPVNL-TIHF-------GGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST 1715
Query: 510 KRYVYCFESPRGPGVNTPMVIDTTGTYF----------------RREGL--GNYYICGKS 551
Y F S +G ++ T F + +GL + G S
Sbjct: 1716 S---YTFRSEKG-------LLSA--TQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS 1763
Query: 552 PTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAII-- 609
L EY LA + A E+ +
Sbjct: 1764 -----------LG---EY------AALA-------------SLADVMSI----ESLVEVV 1786
Query: 610 ---GLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDLSRFLLERVARRQ- 665
G+ G S +G+ A GR + +A ++++ERV +R
Sbjct: 1787 FYRGMTMQVAVPRDELGRSNYGM-IAINPGRVAASFSQEAL-------QYVVERVGKRTG 1838
Query: 666 ---EAREVN 671
E VN
Sbjct: 1839 WLVEI--VN 1845
>3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas,
oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten
maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B*
Length = 404
Score = 41.4 bits (96), Expect = 8e-04
Identities = 14/80 (17%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRIS 162
+ + GGG +++ + DG V V+ + N+KD
Sbjct: 5 VCVCGGGNGAHTLSGLAASR--DGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQ 62
Query: 163 TSGQPTQESKVSDPHKALKE 182
T + + DP A+
Sbjct: 63 TEVKSRPKVITKDPEIAISG 82
Score = 30.2 bits (67), Expect = 2.2
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 2/33 (6%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ + GGG +++ + DG V V+
Sbjct: 5 VCVCGGGNGAHTLSGLAASR--DGVEVRVLTLF 35
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 40.6 bits (96), Expect = 0.001
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 25/75 (33%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLD----GCRVAVVDRDFTVNYDLDEYA----RASTT 295
D+++IGGG G+ IA D G V +++ DL A AS+
Sbjct: 3 TKDLIVIGGGINGAGIA-------ADAAGRGLSVLMLEAQ-----DL---ACATSSASSK 47
Query: 296 LSVGGLR--QQFSLR 308
L GGLR + + R
Sbjct: 48 LIHGGLRYLEHYEFR 62
Score = 37.2 bits (87), Expect = 0.019
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 12/42 (28%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLD----GCRVAVVDR-DF 136
D+++IGGG G+ IA D G V +++ D
Sbjct: 3 TKDLIVIGGGINGAGIA-------ADAAGRGLSVLMLEAQDL 37
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 39.5 bits (92), Expect = 0.003
Identities = 44/255 (17%), Positives = 71/255 (27%), Gaps = 87/255 (34%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
P D+++IGGG GS++A F+ + G RV +++R
Sbjct: 5 PEVFDLIVIGGGPGGSTLASFVAMR---GHRVLLLER----------------------- 38
Query: 302 RQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVNFTPNGYLFCASQDGAATLEKNH 361
F R H IGE P + G K
Sbjct: 39 ----------------EAFPR------HQIGES-----LLPATVHGICAMLGLTDEMKRA 71
Query: 362 QLQKELGAKNVLLGPEQLKAKFPWLNTDDIALACLGLEKEGW------FDPWLYLNAVKK 415
+ G G E F + D + FD L N+ +K
Sbjct: 72 GFPIKRGGT-FRWGKEPEPWTFGFTRHPDDPYG------FAYQVERARFDDMLLRNSERK 124
Query: 416 KAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICV 474
G + EV+D L + V R+ +G A +
Sbjct: 125 -----GVDVRERHEVIDVLF-----------EGERAVGV---RYRNTEGVELMAH-ARFI 164
Query: 475 IAAGAYSGQVARMLK 489
+ A +V++ +
Sbjct: 165 VDASGNRTRVSQAVG 179
Score = 36.5 bits (84), Expect = 0.030
Identities = 14/38 (36%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
P D+++IGGG GS++A F+ + G RV +++R+
Sbjct: 5 PEVFDLIVIGGGPGGSTLASFVAMR---GHRVLLLERE 39
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 39.2 bits (92), Expect = 0.005
Identities = 49/291 (16%), Positives = 90/291 (30%), Gaps = 86/291 (29%)
Query: 231 PESRYQG-NTLFPTHVDILIIGGGAIGSSIAYFIKEKVLD----GCRVAVVDRDFTVNYD 285
++R + +D+LIIGGG G+ +A + G + +++ D
Sbjct: 18 NKTRQDSIQKMQQEELDLLIIGGGITGAGVA-------VQAAASGIKTGLIEMQ-----D 65
Query: 286 LDEYA----RASTTLSVGGLR--QQF-------SLRENIEMSLFGAEFLRNIKHHCHVIG 332
A ST L GG+R + F ++ E A H
Sbjct: 66 F---AEGTSSRSTKLVHGGIRYLKTFDVEVVADTVGER-------AVVQGIAPHIPKPDP 115
Query: 333 -----EDEPDVNFTPNGYLFC--------ASQDGAATLEKNHQLQKELGAKNVLLGPEQL 379
++ + A + + L PE++
Sbjct: 116 MLLPIYEDEGATTFNMFSVKVAMDLYDKLA---NVTGTKYENY----------TLTPEEV 162
Query: 380 KAKFPWLNTDDIALACLGLEKEGWFDPWLYLNAVKKKAISLGAEYV-RGEVVDFLRRRNN 438
+ P+L + + A G+ + + + KKA GA V + + V FL
Sbjct: 163 LEREPFLKKEGLKGA--GVYLDFRNNDARLVIDNIKKAAEDGAYLVSKMKAVGFLY---- 216
Query: 439 QVHYEGYDDGEYHSVNECVVRD-EKGELKTITFAICVI-AAGAYSGQVARM 487
+ + + RD E+ I A VI +G + +V +
Sbjct: 217 -------EGDQ---IVGVKARDLLTDEVIEIK-AKLVINTSGPWVDKVRNL 256
Score = 34.6 bits (80), Expect = 0.099
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 13/56 (23%)
Query: 87 PESRYQG-NTLFPTHVDILIIGGGAIGSSIAYFIKEKVLD----GCRVAVVDR-DF 136
++R + +D+LIIGGG G+ +A + G + +++ DF
Sbjct: 18 NKTRQDSIQKMQQEELDLLIIGGGITGAGVA-------VQAAASGIKTGLIEMQDF 66
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 39.0 bits (90), Expect = 0.005
Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 9/110 (8%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR-DFTVNYDLDEDGSNPGDQESSN 156
D++I+G G IG + A + G +VA+ D + + N + + +
Sbjct: 44 DIKYDVVIVGSGPIGCTYARELVGA---GYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNI 100
Query: 157 DKDRISTSGQPTQESKVSDPHK-----ALKETTNRYSFNDAEAPSGYVDP 201
DK GQ S + + + + P
Sbjct: 101 DKFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLR 150
Score = 35.2 bits (80), Expect = 0.066
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
D++I+G G IG + A + G +VA+ D
Sbjct: 44 DIKYDVVIVGSGPIGCTYARELVGA---GYKVAMFDI 77
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate
dehydrogenase (EC...; 1574749, chorismate mutase type
II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae}
SCOP: a.100.1.12 c.2.1.6
Length = 298
Score = 38.5 bits (90), Expect = 0.005
Identities = 7/33 (21%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+++ G G +G A +++ G ++++DR+
Sbjct: 25 VIVGGYGKLGGLFARYLRAS---GYPISILDRE 54
Score = 38.5 bits (90), Expect = 0.005
Identities = 7/33 (21%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+++ G G +G A +++ G ++++DR+
Sbjct: 25 VIVGGYGKLGGLFARYLRAS---GYPISILDRE 54
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 38.2 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
D LI+G G GS +A + G RV +VDR
Sbjct: 29 GFDYLIVGAGFAGSVLAERLASS---GQRVLIVDRR 61
Score = 38.2 bits (88), Expect = 0.008
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
D LI+G G GS +A + G RV +VDR
Sbjct: 29 GFDYLIVGAGFAGSVLAERLASS---GQRVLIVDRR 61
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 37.2 bits (85), Expect = 0.017
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
VD+L+IG G G A + + DG +VD +
Sbjct: 10 SVDVLVIGAGPTGLGAAKRLNQI--DGPSWMIVDSN 43
Score = 37.2 bits (85), Expect = 0.017
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
VD+L+IG G G A + + DG +VD +
Sbjct: 10 SVDVLVIGAGPTGLGAAKRLNQI--DGPSWMIVDSN 43
>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin,
flavin, electron transfer, hydride transfer,
oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia
coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1
Length = 671
Score = 37.3 bits (87), Expect = 0.018
Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNPGDQESSNDKDRI 161
+ IIG G IG A ++ + G + F + +D G +
Sbjct: 496 KVAIIGCGGIGFDTAMYLSQP---GESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPR 552
Query: 162 STSGQPTQESKVSDPHKALKETT 184
S + K S P + L +TT
Sbjct: 553 SPRQIVMLQRKASKPGQGLGKTT 575
Score = 36.5 bits (85), Expect = 0.031
Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 3/68 (4%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQF 305
+ IIG G IG A ++ + G + F + +D + + LS G++
Sbjct: 496 KVAIIGCGGIGFDTAMYLSQP---GESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPR 552
Query: 306 SLRENIEM 313
S R+ + +
Sbjct: 553 SPRQIVML 560
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 36.6 bits (85), Expect = 0.023
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
++I+G G G AY +KE + G V ++
Sbjct: 3 GSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISA 38
Score = 36.6 bits (85), Expect = 0.023
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
++I+G G G AY +KE + G V ++
Sbjct: 3 GSAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISA 38
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 36.9 bits (86), Expect = 0.024
Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 30/91 (32%)
Query: 231 PESRYQG-NTLFPTHVDILIIGGGAIGSSIAYFIKEKVLD----GCRVAVVDRDFTVNYD 285
+ R + + +D+L+IGGG G+ IA LD G + +V+ + D
Sbjct: 4 AKKRDKCIGEMSEKQLDLLVIGGGITGAGIA-------LDAQVRGIQTGLVEMN-----D 51
Query: 286 LDEYARASTTLSV------GGLR--QQFSLR 308
AS T S GGLR +QF ++
Sbjct: 52 F-----ASGTSSRSTKLVHGGLRYLKQFEIK 77
Score = 35.0 bits (81), Expect = 0.080
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 13/56 (23%)
Query: 87 PESRYQG-NTLFPTHVDILIIGGGAIGSSIAYFIKEKVLD----GCRVAVVDR-DF 136
+ R + + +D+L+IGGG G+ IA LD G + +V+ DF
Sbjct: 4 AKKRDKCIGEMSEKQLDLLVIGGGITGAGIA-------LDAQVRGIQTGLVEMNDF 52
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 36.2 bits (83), Expect = 0.028
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
ILI+G G G+ I + EK G +V ++D+
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAEK---GHQVHIIDQR 35
Score = 36.2 bits (83), Expect = 0.028
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
ILI+G G G+ I + EK G +V ++D+
Sbjct: 3 SKKILIVGAGFSGAVIGRQLAEK---GHQVHIIDQR 35
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 36.2 bits (83), Expect = 0.033
Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV---NYDLDEDGSNPGD 151
D +I+G G G+ A +K+ +V V+++ + Y D +G
Sbjct: 3 DYIIVGSGLFGAVCANELKKL---NKKVLVIEKRNHIGGNAYTEDCEGIQIHK 52
Score = 35.4 bits (81), Expect = 0.047
Identities = 9/34 (26%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
D +I+G G G+ A +K+ +V V+++
Sbjct: 3 DYIIVGSGLFGAVCANELKKL---NKKVLVIEKR 33
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 36.1 bits (84), Expect = 0.034
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
H+D+LI G G G+ +AY + G RV VV++
Sbjct: 4 DNHIDVLINGCGIGGAMLAYLLG---RQGHRVVVVEQ 37
Score = 36.1 bits (84), Expect = 0.034
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
H+D+LI G G G+ +AY + G RV VV++
Sbjct: 4 DNHIDVLINGCGIGGAMLAYLLG---RQGHRVVVVEQ 37
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 36.2 bits (84), Expect = 0.035
Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
D+L++GGG GS+ A + + G + ++++
Sbjct: 6 DVLVVGGGPGGSTAARYAAKY---GLKTLMIEK 35
Score = 36.2 bits (84), Expect = 0.035
Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
D+L++GGG GS+ A + + G + ++++
Sbjct: 6 DVLVVGGGPGGSTAARYAAKY---GLKTLMIEK 35
Score = 35.4 bits (82), Expect = 0.062
Identities = 13/85 (15%), Positives = 22/85 (25%), Gaps = 20/85 (23%)
Query: 404 FDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKG 463
FD L A GA+ + + N +V
Sbjct: 104 FDKHLA-----ALAAKAGADVWVKSPALGVIKENGKV--------------AGAKIRHNN 144
Query: 464 ELKTITFAICVIAAGAYSGQVARML 488
E+ + + + A G S + R
Sbjct: 145 EIVDVRAKMVIAADGFES-EFGRWA 168
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB:
3l4b_A*
Length = 155
Score = 34.5 bits (80), Expect = 0.036
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I+I G G +GS IA G V VVD++
Sbjct: 22 IVIFGCGRLGSLIA---NLASSSGHSVVVVDKN 51
Score = 34.5 bits (80), Expect = 0.036
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I+I G G +GS IA G V VVD++
Sbjct: 22 IVIFGCGRLGSLIA---NLASSSGHSVVVVDKN 51
>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint
center for structural genomics, JCSG, protein structu
initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus
halodurans}
Length = 293
Score = 35.7 bits (82), Expect = 0.040
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 93 GNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEDGSNP 149
T+ +V ++G G +G S+A G +V V R+ + + E G P
Sbjct: 150 DFTIHGANV--AVLGLGRVGMSVARKFAAL---GAKVKVGARESDLLARIAEMGMEP 201
Score = 33.8 bits (77), Expect = 0.15
Identities = 11/43 (25%), Positives = 19/43 (44%), Gaps = 5/43 (11%)
Query: 237 GNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
T+ +V ++G G +G S+A G +V V R+
Sbjct: 150 DFTIHGANV--AVLGLGRVGMSVARKFAAL---GAKVKVGARE 187
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A
{Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Length = 281
Score = 35.6 bits (83), Expect = 0.042
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+LI+G G +G S A ++ G ++ D +
Sbjct: 4 VLIVGVGFMGGSFAKSLRRSGFKG-KIYGYDIN 35
Score = 35.6 bits (83), Expect = 0.042
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+LI+G G +G S A ++ G ++ D +
Sbjct: 4 VLIVGVGFMGGSFAKSLRRSGFKG-KIYGYDIN 35
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta,
oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus}
PDB: 3ggg_D* 3ggp_A*
Length = 314
Score = 35.7 bits (83), Expect = 0.044
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+LI+G G +G S A ++ G ++ D +
Sbjct: 36 VLIVGVGFMGGSFAKSLRRSGFKG-KIYGYDIN 67
Score = 35.7 bits (83), Expect = 0.044
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+LI+G G +G S A ++ G ++ D +
Sbjct: 36 VLIVGVGFMGGSFAKSLRRSGFKG-KIYGYDIN 67
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate,
oxidative decarboxylation pathway, tyrosine
biosynthesis, oxidoreduct; HET: NAD; 2.10A
{Streptococcus mutans} PDB: 3dzb_A
Length = 290
Score = 35.2 bits (82), Expect = 0.047
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I I G G IG+S+A IK ++ +R
Sbjct: 9 IYIAGLGLIGASLALGIKRDHPHY-KIVGYNRS 40
Score = 35.2 bits (82), Expect = 0.047
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I I G G IG+S+A IK ++ +R
Sbjct: 9 IYIAGLGLIGASLALGIKRDHPHY-KIVGYNRS 40
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein
structure initiative, northeast structural genomics
consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Length = 421
Score = 35.5 bits (82), Expect = 0.059
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
VD+L+IG G G+ A + + G +V +V++
Sbjct: 3 REKVDVLVIGAGPAGTVAASLVNKS---GFKVKIVEKQ 37
Score = 35.5 bits (82), Expect = 0.059
Identities = 11/38 (28%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
VD+L+IG G G+ A + + G +V +V++
Sbjct: 3 REKVDVLVIGAGPAGTVAASLVNKS---GFKVKIVEKQ 37
Score = 33.2 bits (76), Expect = 0.24
Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 22/88 (25%)
Query: 404 FDPWLYLNAVKKKAISLGAEYVRG-EVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEK 462
FD L +A G + V D + V + D
Sbjct: 108 FDKTLA-----DEAARQGVDVEYEVGVTDIKFFGTDSVT---------------TIEDIN 147
Query: 463 GELKTITFAICVIAAGAYSGQVARMLKI 490
G + I +I A Y + RM +
Sbjct: 148 GNKREIEARF-IIDASGYGRVIPRMFGL 174
>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA,
ketopantoate reductase, rossman fold, monomer, APO,
oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7
c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*
Length = 291
Score = 34.9 bits (81), Expect = 0.061
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 10/64 (15%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGLRQQFS 306
I ++G GA+G + ++ G V R + + + G S
Sbjct: 3 ITVLGCGALGQLWLTALCKQ---GHEVQGWLRV-------PQPYCSVNLVETDGSIFNES 52
Query: 307 LREN 310
L N
Sbjct: 53 LTAN 56
Score = 34.5 bits (80), Expect = 0.076
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I ++G GA+G + ++ G V R
Sbjct: 3 ITVLGCGALGQLWLTALCKQ---GHEVQGWLRV 32
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 35.1 bits (79), Expect = 0.062
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
+LI+G G GS A ++ + +AV D+
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDK 35
Score = 35.1 bits (79), Expect = 0.062
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
+LI+G G GS A ++ + +AV D+
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDK 35
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 35.2 bits (81), Expect = 0.063
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
D+LIIGGG GSS AY + + G ++ +VD
Sbjct: 8 DVLIIGGGFAGSSAAYQLSRR---GLKILLVDS 37
Score = 35.2 bits (81), Expect = 0.063
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
D+LIIGGG GSS AY + + G ++ +VD
Sbjct: 8 DVLIIGGGFAGSSAAYQLSRR---GLKILLVDS 37
Score = 33.2 bits (76), Expect = 0.25
Identities = 12/85 (14%), Positives = 21/85 (24%), Gaps = 18/85 (21%)
Query: 404 FDPWLYLNAVKKKAISLGAEYVRGEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKG 463
++ + K+A G E + V +
Sbjct: 102 YNQRVL-----KEAQDRGVEIWDLTTAMKPIFEDGYV------------KGAVLFNRRTN 144
Query: 464 ELKTITFAICVIAAGAYSGQVARML 488
E T+ + V+ A YS L
Sbjct: 145 EELTVY-SKVVVEATGYSRSFRSKL 168
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN;
2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 35.1 bits (80), Expect = 0.070
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
D+ ++G G G +IA + + RV V++R
Sbjct: 7 RFDLFVVGSGFFGLTIAERVATQ--LDKRVLVLERR 40
Score = 35.1 bits (80), Expect = 0.070
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
D+ ++G G G +IA + + RV V++R
Sbjct: 7 RFDLFVVGSGFFGLTIAERVATQ--LDKRVLVLERR 40
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 34.1 bits (79), Expect = 0.087
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
++IIGG +A + + V ++++D
Sbjct: 3 VIIIGGETTAYYLA---RSMLSRKYGVVIINKD 32
Score = 34.1 bits (79), Expect = 0.087
Identities = 7/33 (21%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
++IIGG +A + + V ++++D
Sbjct: 3 VIIIGGETTAYYLA---RSMLSRKYGVVIINKD 32
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 34.7 bits (80), Expect = 0.097
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+L++GG + AY +K V V V+++
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVINKS 36
Score = 34.7 bits (80), Expect = 0.097
Identities = 9/33 (27%), Positives = 17/33 (51%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+L++GG + AY +K V V V+++
Sbjct: 4 VLVLGGRFGALTAAYTLKRLVGSKADVKVINKS 36
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 34.6 bits (79), Expect = 0.10
Identities = 14/105 (13%), Positives = 33/105 (31%), Gaps = 8/105 (7%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR-----DFTVNYDLDEDGSNPGDQES 154
+V ++IG G + A + E G + +++ + ++ NP + S
Sbjct: 5 YVPAVVIGTGYGAAVSALRLGEA---GVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSS 61
Query: 155 SNDKDRISTSGQPTQESKVSDPHKALKETTNRYSFNDAEAPSGYV 199
+ G V+ +R +++ G
Sbjct: 62 WFKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRG 106
Score = 33.5 bits (76), Expect = 0.27
Identities = 7/35 (20%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
+V ++IG G + A + E G + +++
Sbjct: 5 YVPAVVIGTGYGAAVSALRLGEA---GVQTLMLEM 36
>3ic5_A Putative saccharopine dehydrogenase; structural genomics,
APC63807.2, N-terminal domain, saccharo dehydrogenase,
PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Length = 118
Score = 32.5 bits (74), Expect = 0.12
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+I ++G G IG IA +K V V D D
Sbjct: 7 NICVVGAGKIGQMIAALLKTS--SNYSVTVADHD 38
Score = 32.5 bits (74), Expect = 0.12
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+I ++G G IG IA +K V V D D
Sbjct: 7 NICVVGAGKIGQMIAALLKTS--SNYSVTVADHD 38
>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase,
NADP, pantothenate BIOS PSI-2, protein structure
initiative; 1.90A {Methylococcus capsulatus}
Length = 320
Score = 33.7 bits (78), Expect = 0.14
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 7/45 (15%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYD-LDEDG 146
IL+IG GAIGS + + G V+VV R +Y+ + G
Sbjct: 5 ILVIGTGAIGSFYGALLAKT---GHCVSVVSRS---DYETVKAKG 43
Score = 33.7 bits (78), Expect = 0.18
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 3/32 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
IL+IG GAIGS + + G V+VV R
Sbjct: 5 ILVIGTGAIGSFYGALLAKT---GHCVSVVSR 33
>2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography
structure, oxidoreductase; HET: OMT NAP; 1.55A
{Synechocystis SP} SCOP: a.100.1.12 c.2.1.6
Length = 279
Score = 33.7 bits (78), Expect = 0.15
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I ++G G IG+S+A ++ + G + V R
Sbjct: 3 IGVVGLGLIGASLAGDLRRR---GHYLIGVSRQ 32
Score = 33.7 bits (78), Expect = 0.15
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I ++G G IG+S+A ++ + G + V R
Sbjct: 3 IGVVGLGLIGASLAGDLRRR---GHYLIGVSRQ 32
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 34.2 bits (78), Expect = 0.15
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
T + IIGGG GS + + G V + +R
Sbjct: 21 MTRSKVAIIGGGPAGSVAGLTLHKL---GHDVTIYERS 55
Score = 34.2 bits (78), Expect = 0.15
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
T + IIGGG GS + + G V + +R
Sbjct: 21 MTRSKVAIIGGGPAGSVAGLTLHKL---GHDVTIYERS 55
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 34.0 bits (77), Expect = 0.15
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 89 SRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 138
RY + DI+I+G G+ G S AY + + R+ +V+
Sbjct: 68 RRYFADLDAHAETDIVIVGAGSCGLSAAYVLS-TLRPDLRITIVEAGVAP 116
Score = 34.0 bits (77), Expect = 0.15
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Query: 233 SRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 282
RY + DI+I+G G+ G S AY + + R+ +V+
Sbjct: 68 RRYFADLDAHAETDIVIVGAGSCGLSAAYVLS-TLRPDLRITIVEAGVAP 116
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD,
RCK domain, potassium transport, potassium channel,
KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii}
SCOP: c.2.1.9
Length = 140
Score = 32.5 bits (75), Expect = 0.15
Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 12/66 (18%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD----FTVNYDLD-----EDGSNPGDQE 153
I+I G G +G ++A K G + ++D D + ++D D + E
Sbjct: 7 IIIAGIGRVGYTLA---KSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLE 63
Query: 154 SSNDKD 159
+ +D
Sbjct: 64 DAGIED 69
Score = 32.1 bits (74), Expect = 0.21
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I+I G G +G ++A K G + ++D D
Sbjct: 7 IIIAGIGRVGYTLA---KSLSEKGHDIVLIDID 36
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 34.1 bits (79), Expect = 0.16
Identities = 14/66 (21%), Positives = 28/66 (42%), Gaps = 12/66 (18%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFT----VNYDLD-----EDGSNPGDQE 153
I+I+G G +G ++A + V + + +VD+D + D S+P
Sbjct: 6 IIILGAGQVGGTLA---ENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLH 62
Query: 154 SSNDKD 159
+ +D
Sbjct: 63 EAGAQD 68
Score = 34.1 bits (79), Expect = 0.17
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I+I+G G +G ++A + V + + +VD+D
Sbjct: 6 IIILGAGQVGGTLA---ENLVGENNDITIVDKD 35
Score = 31.0 bits (71), Expect = 1.2
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I+I+GGG IG+S+A +++ V +++R+
Sbjct: 237 RIMIVGGGNIGASLAKRLEQ----TYSVKLIERN 266
Score = 31.0 bits (71), Expect = 1.2
Identities = 11/34 (32%), Positives = 22/34 (64%), Gaps = 4/34 (11%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I+I+GGG IG+S+A +++ V +++R+
Sbjct: 237 RIMIVGGGNIGASLAKRLEQ----TYSVKLIERN 266
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding subunit);
electron transport(flavocytochrome); HET: FAD HEM; 2.53A
{Allochromatium vinosum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 401
Score = 34.0 bits (78), Expect = 0.16
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
++++GGG G++ A +IK V +++ +
Sbjct: 5 VVVVGGGTGGATAAKYIKLA-DPSIEVTLIEPN 36
Score = 34.0 bits (78), Expect = 0.16
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
++++GGG G++ A +IK V +++ +
Sbjct: 5 VVVVGGGTGGATAAKYIKLA-DPSIEVTLIEPN 36
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F
structural genomics, JCSG, protein structure initiative;
2.60A {Corynebacterium glutamicum atcc 13032}
Length = 341
Score = 33.9 bits (78), Expect = 0.16
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ I+G G IG S+ + V +R
Sbjct: 11 VCILGLGLIGGSLLRDLHAA---NHSVFGYNRS 40
Score = 33.9 bits (78), Expect = 0.16
Identities = 8/33 (24%), Positives = 13/33 (39%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ I+G G IG S+ + V +R
Sbjct: 11 VCILGLGLIGGSLLRDLHAA---NHSVFGYNRS 40
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa}
PDB: 1zx9_A*
Length = 467
Score = 34.0 bits (79), Expect = 0.17
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 427 GEVVDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479
+ L G + VR +G + + F C++A GA
Sbjct: 98 AKYEGILGGNPAITVVHGE--ARFKDDQSLTVRLNEGGERVVMFDRCLVATGA 148
>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE
protein structure initiative; 2.50A {Geobacter
metallireducens}
Length = 312
Score = 33.7 bits (78), Expect = 0.18
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
I I+G GA+G ++ G V + R
Sbjct: 5 IAIVGAGALGLYYGALLQRS---GEDVHFLLR 33
Score = 33.7 bits (78), Expect = 0.18
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
I I+G GA+G ++ G V + R
Sbjct: 5 IAIVGAGALGLYYGALLQRS---GEDVHFLLR 33
>3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family
ketopantoate reductase, struct genomics, joint center
for structural genomics; HET: NDP BCN; 2.15A {Ralstonia
eutropha}
Length = 318
Score = 33.4 bits (77), Expect = 0.20
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
+ I+G GA+G + G V ++ R
Sbjct: 22 VAIMGAGAVGCYYGGMLARA---GHEVILIAR 50
Score = 33.4 bits (77), Expect = 0.20
Identities = 8/32 (25%), Positives = 14/32 (43%), Gaps = 3/32 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
+ I+G GA+G + G V ++ R
Sbjct: 22 VAIMGAGAVGCYYGGMLARA---GHEVILIAR 50
>3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics,
putative 2-dehydropantoate 2-reductase, protein
structure initiative; 2.30A {Staphylococcus aureus
subsp}
Length = 294
Score = 33.4 bits (77), Expect = 0.20
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
+ IIG GA+G++IAY +++ ++ R
Sbjct: 5 VAIIGPGAVGTTIAYELQQS---LPHTTLIGR 33
Score = 33.4 bits (77), Expect = 0.20
Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
+ IIG GA+G++IAY +++ ++ R
Sbjct: 5 VAIIGPGAVGTTIAYELQQS---LPHTTLIGR 33
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 33.2 bits (76), Expect = 0.23
Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 95 TLFPTHVDILIIGGGAIGSSIAYFIKEKVLD--GCRVAVVDRDFTVNYDLDEDGSNP 149
T+ + V ++G G G +IA + G V V R + E G P
Sbjct: 154 TIHGSQV--AVLGLGRTGMTIA-----RTFAALGANVKVGARSSAHLARITEMGLVP 203
Score = 32.1 bits (73), Expect = 0.56
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 9/43 (20%)
Query: 239 TLFPTHVDILIIGGGAIGSSIAYFIKEKVLD--GCRVAVVDRD 279
T+ + V ++G G G +IA + G V V R
Sbjct: 154 TIHGSQV--AVLGLGRTGMTIA-----RTFAALGANVKVGARS 189
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 33.1 bits (75), Expect = 0.25
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 89 SRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
RY + + D++++G G+ G S AY I + +VA++++
Sbjct: 28 RRYMTDMITYAETDVVVVGAGSAGLSAAYEISKN--PNVQVAIIEQ 71
Score = 33.1 bits (75), Expect = 0.25
Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 233 SRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
RY + + D++++G G+ G S AY I + +VA++++
Sbjct: 28 RRYMTDMITYAETDVVVVGAGSAGLSAAYEISKN--PNVQVAIIEQ 71
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 33.5 bits (77), Expect = 0.25
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLD--GCRVAVVDRD 135
P D+LI+GGG +G ++A L VV++
Sbjct: 24 PIETDVLILGGGPVGMALALD-----LAHRQVGHLVVEQT 58
Score = 33.5 bits (77), Expect = 0.25
Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 7/40 (17%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLD--GCRVAVVDRD 279
P D+LI+GGG +G ++A L VV++
Sbjct: 24 PIETDVLILGGGPVGMALALD-----LAHRQVGHLVVEQT 58
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI,
M structural genomics; 1.70A {Archaeoglobus fulgidus}
Length = 141
Score = 31.8 bits (73), Expect = 0.26
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ ++IG A G + + G +V VD+
Sbjct: 8 EYIVIGSEAAGVGLVRELTA---AGKKVLAVDKS 38
Score = 31.8 bits (73), Expect = 0.26
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ ++IG A G + + G +V VD+
Sbjct: 8 EYIVIGSEAAGVGLVRELTA---AGKKVLAVDKS 38
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 33.2 bits (75), Expect = 0.26
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 89 SRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 138
SRY + D++I+G G+ G S AY I + +V +++
Sbjct: 54 SRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKN-RPDLKVCIIESSVAP 102
Score = 33.2 bits (75), Expect = 0.26
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 233 SRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 282
SRY + D++I+G G+ G S AY I + +V +++
Sbjct: 54 SRYFKDLDKFAVSDVIIVGAGSSGLSAAYVIAKN-RPDLKVCIIESSVAP 102
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 33.3 bits (75), Expect = 0.29
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 240 LFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVG 299
H D++I+G G ++ + G ++ V+DR+ Y + +L++
Sbjct: 16 FQGEHYDVIILGTGLKECILSGLLSHY---GKKILVLDRN-------PYYGGETASLNLT 65
Query: 300 GLRQQFSLRENIEMSLF 316
L F +ENI
Sbjct: 66 NLYNTFKPKENIPSKYG 82
Score = 30.7 bits (68), Expect = 2.0
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 96 LFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
H D++I+G G ++ + G ++ V+DR
Sbjct: 16 FQGEHYDVIILGTGLKECILSGLLSHY---GKKILVLDR 51
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding
protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB:
1woc_A 2pnh_A 4apv_A
Length = 104
Score = 30.9 bits (70), Expect = 0.30
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 461 EKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFL 500
E G + + VI +G + + + +G + QGF+
Sbjct: 39 EAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFI 78
>3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE,
unknown function, cytoplasm, NADP, oxidoreductase; 1.90A
{Bacillus subtilis}
Length = 307
Score = 33.0 bits (76), Expect = 0.32
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I IIGGG++G AY++ V VV R
Sbjct: 5 IGIIGGGSVGLLCAYYLSL----YHDVTVVTRR 33
Score = 33.0 bits (76), Expect = 0.32
Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 4/33 (12%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I IIGGG++G AY++ V VV R
Sbjct: 5 IGIIGGGSVGLLCAYYLSL----YHDVTVVTRR 33
>2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure,
alpha-beta structure, structural genomics, protein
structure initiative; HET: MSE; 2.00A {Enterococcus
faecalis}
Length = 316
Score = 32.6 bits (75), Expect = 0.33
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I I G GA+GS + + + G V ++D+
Sbjct: 6 IAIAGAGAMGSRLGIMLHQG---GNDVTLIDQW 35
Score = 32.6 bits (75), Expect = 0.33
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I I G GA+GS + + + G V ++D+
Sbjct: 6 IAIAGAGAMGSRLGIMLHQG---GNDVTLIDQW 35
>2hjr_A Malate dehydrogenase; malaria, structural genomics, structural
genomics consortium, SGC, oxidoreductase; HET: CIT APR;
2.20A {Cryptosporidium parvum}
Length = 328
Score = 32.5 bits (75), Expect = 0.36
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLD 125
I IIG G IGS+IA + +K L
Sbjct: 17 ISIIGAGQIGSTIALLLGQKDLG 39
Score = 32.5 bits (75), Expect = 0.36
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLD 269
I IIG G IGS+IA + +K L
Sbjct: 17 ISIIGAGQIGSTIALLLGQKDLG 39
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 33.0 bits (76), Expect = 0.37
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ ++++G G G +A ++ L G V V++R
Sbjct: 9 RSDAAVIVVGAGPAGMMLAGELR---LAGVEVVVLERL 43
Score = 33.0 bits (76), Expect = 0.37
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ ++++G G G +A ++ L G V V++R
Sbjct: 9 RSDAAVIVVGAGPAGMMLAGELR---LAGVEVVVLERL 43
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 32.8 bits (75), Expect = 0.37
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+++IGGG G + AY ++ + ++ ++
Sbjct: 5 VVVIGGGVGGIATAYNLRNL-MPDLKITLISDR 36
Score = 32.8 bits (75), Expect = 0.37
Identities = 7/33 (21%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+++IGGG G + AY ++ + ++ ++
Sbjct: 5 VVVIGGGVGGIATAYNLRNL-MPDLKITLISDR 36
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 32.5 bits (73), Expect = 0.41
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I+IIG G G A + E + + +
Sbjct: 9 TPKIVIIGAGPTGLGAAVRLTEL--GYKNWHLYECN 42
Score = 32.5 bits (73), Expect = 0.41
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 2/36 (5%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I+IIG G G A + E + + +
Sbjct: 9 TPKIVIIGAGPTGLGAAVRLTEL--GYKNWHLYECN 42
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 32.7 bits (75), Expect = 0.42
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ ++++G G G +A + L G V V+++
Sbjct: 10 RSDASVIVVGAGPAGLMLAGEL---RLGGVDVMVLEQL 44
Score = 32.7 bits (75), Expect = 0.42
Identities = 8/38 (21%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ ++++G G G +A + L G V V+++
Sbjct: 10 RSDASVIVVGAGPAGLMLAGEL---RLGGVDVMVLEQL 44
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase,
homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Length = 468
Score = 32.5 bits (75), Expect = 0.44
Identities = 11/49 (22%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 430 VDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAG 478
V++L ++N +Y+G G + + + V G+ + + +IA G
Sbjct: 99 VEYLFKKNKVTYYKGE--GSFETAHSIRVNGLDGKQEMLETKKTIIATG 145
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 32.5 bits (75), Expect = 0.45
Identities = 10/49 (20%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 430 VDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAG 478
V L + N +EG+ G+ + + V G + + ++A+G
Sbjct: 105 VASLIKANGVTLFEGH--GKLLAGKKVEVTAADGSSQVLDTENVILASG 151
>2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A
{Archaeoglobus fulgidus}
Length = 236
Score = 32.0 bits (72), Expect = 0.45
Identities = 19/89 (21%), Positives = 39/89 (43%), Gaps = 17/89 (19%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCR-VAVVDRDFT---VNYDLDEYARASTTLSVGGLR 302
+ +IG GAIG +A +++ +G A++D + +DE+ + ++V
Sbjct: 3 VGLIGYGAIGKFLAEWLER---NGFEIAAILDVRGEHEKMVRGIDEFLQREMDVAVEAAS 59
Query: 303 QQFSLRENIEMSLFGAEFLRNIKHHCHVI 331
QQ ++++ E L K +I
Sbjct: 60 QQ-AVKDYAEKIL---------KAGIDLI 78
Score = 31.2 bits (70), Expect = 0.87
Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCR-VAVVDRDFT---VNYDLDEDGSNPGD 151
+ +IG GAIG +A +++ +G A++D + +DE D
Sbjct: 3 VGLIGYGAIGKFLAEWLER---NGFEIAAILDVRGEHEKMVRGIDEFLQREMD 52
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate
dehydrogenase, alpha- ketoglutarate dehydrogenase; HET:
FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A*
1zy8_A* 3rnm_A*
Length = 474
Score = 32.5 bits (75), Expect = 0.46
Identities = 13/49 (26%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 430 VDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAG 478
+ L ++N VH GY G+ N+ G + I +IA G
Sbjct: 103 IAHLFKQNKVVHVNGY--GKITGKNQVTATKADGGTQVIDTKNILIATG 149
>1v1q_A Primosomal replication protein N; primosome, DNA replication, DNA
binding; 2.1A {Escherichia coli} SCOP: b.40.4.3 PDB:
2ccz_A
Length = 134
Score = 31.1 bits (70), Expect = 0.48
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 461 EKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFL 500
E G + + VI +G + + + +G + QGF+
Sbjct: 56 EAGFHRQAWCQMPVIVSGHENQAITHSITVGSRITVQGFI 95
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 32.3 bits (72), Expect = 0.54
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
V I IIG G G S A + G +V + D+
Sbjct: 3 VPIAIIGTGIAGLSAAQALTAA---GHQVHLFDK 33
Score = 32.3 bits (72), Expect = 0.54
Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
V I IIG G G S A + G +V + D+
Sbjct: 3 VPIAIIGTGIAGLSAAQALTAA---GHQVHLFDK 33
>1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase;
HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5
d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A
2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A*
1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A*
Length = 322
Score = 32.1 bits (74), Expect = 0.54
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLD 125
I+++G G IG +A I +K L
Sbjct: 7 IVLVGSGMIGGVMATLIVQKNLG 29
Score = 32.1 bits (74), Expect = 0.54
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLD 269
I+++G G IG +A I +K L
Sbjct: 7 IVLVGSGMIGGVMATLIVQKNLG 29
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 32.1 bits (74), Expect = 0.55
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 430 VDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAG 478
V FL ++N ++G G+ + V +EKGE + + VIA G
Sbjct: 121 VSFLFKKNKIDGFQGT--GKVLGQGKVSVTNEKGEEQVLEAKNVVIATG 167
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 32.3 bits (73), Expect = 0.55
Identities = 7/38 (18%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
T +++ ++GGG G ++A+ ++ + G +++
Sbjct: 14 TTGMNVAVVGGGISGLAVAHHLRSR---GTDAVLLESS 48
Score = 32.3 bits (73), Expect = 0.55
Identities = 7/38 (18%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
T +++ ++GGG G ++A+ ++ + G +++
Sbjct: 14 TTGMNVAVVGGGISGLAVAHHLRSR---GTDAVLLESS 48
>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain,
PSI-2, NYSGXRC, structur genomics, protein structure
initiative; 2.00A {Ralstonia solanacearum}
Length = 335
Score = 31.9 bits (73), Expect = 0.61
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
I I+G GA+G + + G + V+ R
Sbjct: 6 ICIVGAGAVGGYLGARLALA---GEAINVLAR 34
Score = 31.9 bits (73), Expect = 0.61
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
I I+G GA+G + + G + V+ R
Sbjct: 6 ICIVGAGAVGGYLGARLALA---GEAINVLAR 34
>1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann
fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma
gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A*
1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A*
Length = 331
Score = 31.8 bits (73), Expect = 0.62
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 133
+ +IG G IG ++ Y + L V + D
Sbjct: 12 VAMIGSGMIGGTMGYLCALREL--ADVVLYD 40
Score = 31.8 bits (73), Expect = 0.62
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 277
+ +IG G IG ++ Y + L V + D
Sbjct: 12 VAMIGSGMIGGTMGYLCALREL--ADVVLYD 40
>1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein
structure initiative, joint center for structural G
oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima}
SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A*
Length = 253
Score = 31.5 bits (71), Expect = 0.66
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
H+ +LIIG G IG + ++ + ++ DR
Sbjct: 12 HMTVLIIGMGNIGKKLV-----ELGNFEKIYAYDR 41
Score = 31.5 bits (71), Expect = 0.66
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
H+ +LIIG G IG + ++ + ++ DR
Sbjct: 12 HMTVLIIGMGNIGKKLV-----ELGNFEKIYAYDR 41
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.50A {Sulfolobus solfataricus}
Length = 466
Score = 32.1 bits (74), Expect = 0.70
Identities = 8/49 (16%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 430 VDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAG 478
+ + Y+GY + +V+ ++G+ +IA+G
Sbjct: 95 KRNMSQYETLTFYKGY--VKIKDPTHVIVKTDEGKEIEAETRYMIIASG 141
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 31.3 bits (71), Expect = 0.72
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
P H +LI+G G IG+ ++ + G ++
Sbjct: 37 PGHAQVLILGMGRIGTGAYDELRAR--YGKISLGIEIR 72
Score = 31.3 bits (71), Expect = 0.72
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
P H +LI+G G IG+ ++ + G ++
Sbjct: 37 PGHAQVLILGMGRIGTGAYDELRAR--YGKISLGIEIR 72
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 32.0 bits (73), Expect = 0.74
Identities = 12/57 (21%), Positives = 27/57 (47%), Gaps = 11/57 (19%)
Query: 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
VD++++G G G S A + G +V +++++ + + L+ GG+
Sbjct: 127 VDVVVVGSGGAGFSAAISATDS---GAKVILIEKEPVI--------GGNAKLAAGGM 172
Score = 30.8 bits (70), Expect = 1.6
Identities = 9/38 (23%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 138
VD++++G G G S A + G +V +++++ +
Sbjct: 127 VDVVVVGSGGAGFSAAISATDS---GAKVILIEKEPVI 161
>3tl2_A Malate dehydrogenase; center for structural genomics of infectious
diseases, csgid dehydrogenase, oxidoreductase, citric
acid cycle; 1.70A {Bacillus anthracis}
Length = 315
Score = 31.7 bits (73), Expect = 0.74
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 133
+ +IG G G++ A+ + +K L V +VD
Sbjct: 11 VSVIGAGFTGATTAFLLAQKEL--ADVVLVD 39
Score = 31.7 bits (73), Expect = 0.74
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 277
+ +IG G G++ A+ + +K L V +VD
Sbjct: 11 VSVIGAGFTGATTAFLLAQKEL--ADVVLVD 39
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 32.0 bits (73), Expect = 0.77
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 11/61 (18%)
Query: 241 FPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGG 300
D++IIG G G + A ++ G +V +++++ +T L+ GG
Sbjct: 123 VKETTDVVIIGSGGAGLAAAVSARDA---GAKVILLEKEPIP--------GGNTKLAAGG 171
Query: 301 L 301
+
Sbjct: 172 M 172
Score = 29.7 bits (67), Expect = 3.8
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 97 FPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTV 138
D++IIG G G + A ++ G +V +++++
Sbjct: 123 VKETTDVVIIGSGGAGLAAAVSARDA---GAKVILLEKEPIP 161
>2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase;
2.87A {Aeropyrum pernix}
Length = 308
Score = 31.7 bits (73), Expect = 0.79
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLD 125
I I+G G +G + A + + D
Sbjct: 2 ITILGAGKVGMATAVMLMMRGYD 24
Score = 31.7 bits (73), Expect = 0.79
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLD 269
I I+G G +G + A + + D
Sbjct: 2 ITILGAGKVGMATAVMLMMRGYD 24
>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein
structure initiative, southeast collaboratory for
structural genomics; HET: MES; 1.65A {Caenorhabditis
elegans} SCOP: c.2.1.2
Length = 236
Score = 31.1 bits (71), Expect = 0.81
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 103 ILIIGG-GAIGSSIA-YFIKEKVLDGCRVAVVDRD 135
+++ GG GA+GS+I +F K G V +D
Sbjct: 6 VIVYGGKGALGSAILEFFKKN----GYTVLNIDLS 36
Score = 31.1 bits (71), Expect = 0.81
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 6/35 (17%)
Query: 247 ILIIGG-GAIGSSIA-YFIKEKVLDGCRVAVVDRD 279
+++ GG GA+GS+I +F K G V +D
Sbjct: 6 VIVYGGKGALGSAILEFFKKN----GYTVLNIDLS 36
>2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex,
oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum}
PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A
Length = 317
Score = 31.7 bits (73), Expect = 0.82
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 133
I +IG G IG +IAY + + L V + D
Sbjct: 7 IAVIGSGQIGGNIAYIVGKDNL--ADVVLFD 35
Score = 31.7 bits (73), Expect = 0.82
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 277
I +IG G IG +IAY + + L V + D
Sbjct: 7 IAVIGSGQIGGNIAYIVGKDNL--ADVVLFD 35
>3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid
cycle, structural genomics; HET: ADP; 2.25A {Brucella
melitensis biovar ABORTUS2308} PDB: 3gvh_A*
Length = 324
Score = 31.3 bits (72), Expect = 0.84
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 133
I +IG G IG ++A+ K L V + D
Sbjct: 10 IALIGSGMIGGTLAHLAGLKEL--GDVVLFD 38
Score = 31.3 bits (72), Expect = 0.84
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 277
I +IG G IG ++A+ K L V + D
Sbjct: 10 IALIGSGMIGGTLAHLAGLKEL--GDVVLFD 38
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 31.6 bits (72), Expect = 0.86
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
D++++GGG +G +A ++ G V+++
Sbjct: 47 ALTTDVVVVGGGPVGLMLAGELR---AGGVGALVLEKL 81
Score = 31.6 bits (72), Expect = 0.86
Identities = 8/38 (21%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
D++++GGG +G +A ++ G V+++
Sbjct: 47 ALTTDVVVVGGGPVGLMLAGELR---AGGVGALVLEKL 81
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 31.6 bits (72), Expect = 0.88
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
VD+L++G G G S A F+ G RV VV+R
Sbjct: 3 DHEVDVLVVGAGLGGLSTAMFLA---RQGVRVLVVERR 37
Score = 31.6 bits (72), Expect = 0.88
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 3/38 (7%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
VD+L++G G G S A F+ G RV VV+R
Sbjct: 3 DHEVDVLVVGAGLGGLSTAMFLA---RQGVRVLVVERR 37
>1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle,
NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP:
c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A*
Length = 310
Score = 31.3 bits (72), Expect = 0.90
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 133
I +IG G +G++ A+ + EK L + ++D
Sbjct: 3 ITVIGAGNVGATTAFRLAEKQL-ARELVLLD 32
Score = 31.3 bits (72), Expect = 0.90
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 277
I +IG G +G++ A+ + EK L + ++D
Sbjct: 3 ITVIGAGNVGATTAFRLAEKQL-ARELVLLD 32
>3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural
genomics, center structural genomics of infectious
diseases, csgid; 2.20A {Francisella tularensis}
Length = 321
Score = 31.3 bits (72), Expect = 0.93
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLD 125
I ++G G IG ++A+ K L
Sbjct: 8 ITLVGAGNIGGTLAHLALIKQLG 30
Score = 31.3 bits (72), Expect = 0.93
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLD 269
I ++G G IG ++A+ K L
Sbjct: 8 ITLVGAGNIGGTLAHLALIKQLG 30
>3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD,
oxidoreductase, tricarboxylic acid cycle; 1.55A
{Salinibacter ruber}
Length = 314
Score = 31.3 bits (72), Expect = 0.93
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 133
+ +IG G +G+++A + + + V +VD
Sbjct: 3 VTVIGAGNVGATVAECVARQDV-AKEVVMVD 32
Score = 31.3 bits (72), Expect = 0.93
Identities = 8/31 (25%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 277
+ +IG G +G+++A + + + V +VD
Sbjct: 3 VTVIGAGNVGATVAECVARQDV-AKEVVMVD 32
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG,
structural genomics, PSI-2, protein initiative; 1.90A
{Bordetella parapertussis} PDB: 3dm4_A 3klw_A
Length = 115
Score = 29.8 bits (67), Expect = 1.1
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 460 DEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFL 500
E G + + I +A G + +A +G + Q QGFL
Sbjct: 37 VEAGHPRRVELTISAVALGDLALLLAD-TPLGTEMQVQGFL 76
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 31.3 bits (70), Expect = 1.1
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
V L+IG G G+ A + + G +V+
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQA---GIPTQIVEM 42
Score = 31.3 bits (70), Expect = 1.1
Identities = 9/35 (25%), Positives = 15/35 (42%), Gaps = 3/35 (8%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
V L+IG G G+ A + + G +V+
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQA---GIPTQIVEM 42
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 31.3 bits (71), Expect = 1.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEK 122
H + IIG GA G +A +K+
Sbjct: 4 HHKVAIIGAGAAGIGMAITLKDF 26
Score = 31.3 bits (71), Expect = 1.1
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEK 266
H + IIG GA G +A +K+
Sbjct: 4 HHKVAIIGAGAAGIGMAITLKDF 26
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 31.5 bits (71), Expect = 1.2
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 82 RNVQDPESRYQGNTLFPTH-VDILIIGGGAIGSSIAYFIKE---KVLDGCRVAVVD 133
+ + P + H VD+L++GGG A+ K ++ +VD
Sbjct: 3 PSKETPRGVAIAEPIIVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVD 58
Score = 31.5 bits (71), Expect = 1.2
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 226 RNVQDPESRYQGNTLFPTH-VDILIIGGGAIGSSIAYFIKE---KVLDGCRVAVVD 277
+ + P + H VD+L++GGG A+ K ++ +VD
Sbjct: 3 PSKETPRGVAIAEPIIVEHSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVD 58
>1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle;
HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5
d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A*
1uxi_A*
Length = 309
Score = 30.9 bits (71), Expect = 1.2
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 133
I IIG G +GS+ A+++ K L + ++D
Sbjct: 5 ISIIGAGFVGSTTAHWLAAKEL--GDIVLLD 33
Score = 30.9 bits (71), Expect = 1.2
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 277
I IIG G +GS+ A+++ K L + ++D
Sbjct: 5 ISIIGAGFVGSTTAHWLAAKEL--GDIVLLD 33
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD;
2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5
d.87.1.1
Length = 499
Score = 31.4 bits (72), Expect = 1.2
Identities = 6/54 (11%), Positives = 12/54 (22%), Gaps = 4/54 (7%)
Query: 430 VDFLRRRNNQVHYEGY----DDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479
+ G D + + G + ++A GA
Sbjct: 101 ITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGA 154
Score = 28.3 bits (64), Expect = 8.9
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVV 132
++++G G G+ E G V VV
Sbjct: 185 LIVVGSGVTGAEFVDAYTEL---GVPVTVV 211
Score = 28.3 bits (64), Expect = 8.9
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVV 276
++++G G G+ E G V VV
Sbjct: 185 LIVVGSGVTGAEFVDAYTEL---GVPVTVV 211
>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or
NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP:
c.2.1.2 PDB: 1dir_A* 1hdr_A*
Length = 241
Score = 30.8 bits (70), Expect = 1.3
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 103 ILIIGG-GAIGSSIA-YFIKEKVLDGCRVAVVDRD 135
+L+ GG GA+GS F VA +D
Sbjct: 10 VLVYGGRGALGSRCVQAFRAR----NWWVASIDVV 40
Score = 30.8 bits (70), Expect = 1.3
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 6/35 (17%)
Query: 247 ILIIGG-GAIGSSIA-YFIKEKVLDGCRVAVVDRD 279
+L+ GG GA+GS F VA +D
Sbjct: 10 VLVYGGRGALGSRCVQAFRAR----NWWVASIDVV 40
>2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83,
structural genomics, PSI-2; HET: MSE; 2.15A
{Porphyromonas gingivalis}
Length = 317
Score = 30.7 bits (70), Expect = 1.3
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 103 ILIIGGGAIGSSIAYFIKE---KVLDGCRVAVVDR 134
I + G G +G + V+ + R
Sbjct: 11 IAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45
Score = 30.7 bits (70), Expect = 1.3
Identities = 6/35 (17%), Positives = 11/35 (31%), Gaps = 3/35 (8%)
Query: 247 ILIIGGGAIGSSIAYFIKE---KVLDGCRVAVVDR 278
I + G G +G + V+ + R
Sbjct: 11 IAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIAR 45
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex
protein, pyruvate dehydrogenase complex, glycine
decarboxylase complex; HET: FAD; 3.15A {Pisum sativum}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 30.9 bits (71), Expect = 1.4
Identities = 13/50 (26%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 430 VDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479
++ L ++N + +GY G++ S +E V +GE + +IA G+
Sbjct: 102 IEGLFKKNKVTYVKGY--GKFVSPSEISVDTIEGENTVVKGKHIIIATGS 149
>3en2_A Probable primosomal replication protein N; PRIB RSR213C NESG X-RAY
Q8XZT7 Q8XZT7_ralso, structural genomics, PSI-2; 2.30A
{Ralstonia solanacearum}
Length = 101
Score = 29.0 bits (65), Expect = 1.5
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 461 EKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFL 500
E + + F+I + AG + + R + G + GFL
Sbjct: 39 EAQAARQVEFSIEALGAGKMASVLDR-IAPGTVLECVGFL 77
>2dpo_A L-gulonate 3-dehydrogenase; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
1.70A {Oryctolagus cuniculus} PDB: 2ep9_A* 3ado_A 3a97_A
3adp_A* 3f3s_A*
Length = 319
Score = 30.8 bits (70), Expect = 1.5
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 103 ILIIGGGAIGSSIAY-FIKEKVLDGCRVAVVDRD 135
+LI+G G +G S A F G RV + D +
Sbjct: 9 VLIVGSGLVGRSWAMLFA----SGGFRVKLYDIE 38
Score = 30.8 bits (70), Expect = 1.5
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 247 ILIIGGGAIGSSIAY-FIKEKVLDGCRVAVVDRD 279
+LI+G G +G S A F G RV + D +
Sbjct: 9 VLIVGSGLVGRSWAMLFA----SGGFRVKLYDIE 38
>1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET:
ENA; 2.79A {Archaeoglobus fulgidus} SCOP: c.2.1.5
d.162.1.1 PDB: 1ojs_A* 2x0i_A* 2x0j_A*
Length = 294
Score = 30.5 bits (70), Expect = 1.5
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 133
+ +G G +GS+ A+ + +A+VD
Sbjct: 3 LGFVGAGRVGSTSAFTCLLNLDVD-EIALVD 32
Score = 30.5 bits (70), Expect = 1.5
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVD 277
+ +G G +GS+ A+ + +A+VD
Sbjct: 3 LGFVGAGRVGSTSAFTCLLNLDVD-EIALVD 32
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 31.0 bits (69), Expect = 1.5
Identities = 12/98 (12%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSVGGL 301
D++++G G ++ + G +V +DR+ Y S++++
Sbjct: 4 DEEYDVIVLGTGLTECILSGIMSVN---GKKVLHMDRN-------PYYGGESSSITPLEE 53
Query: 302 RQQFSLRENIEMSLFGAEFLRNIKHHCHVIGEDEPDVN 339
+ G N+ + + V
Sbjct: 54 LYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANGQLVK 91
Score = 30.2 bits (67), Expect = 2.6
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
D++++G G ++ + G +V +DR
Sbjct: 4 DEEYDVIVLGTGLTECILSGIMSVN---GKKVLHMDR 37
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD;
2.72A {Stenotrophomonas maltophilia}
Length = 357
Score = 30.8 bits (70), Expect = 1.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
VD+++IGGG G S YF++ G ++D
Sbjct: 3 SVDVVVIGGGQSGLSAGYFLRRS---GLSYVILDA 34
Score = 30.8 bits (70), Expect = 1.6
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
VD+++IGGG G S YF++ G ++D
Sbjct: 3 SVDVVVIGGGQSGLSAGYFLRRS---GLSYVILDA 34
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A*
3ada_A*
Length = 965
Score = 30.7 bits (69), Expect = 1.8
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136
H D+L++G G G + A +E G RV ++D
Sbjct: 128 HTDVLVVGAGPAGLAAA---REASRSGARVMLLDERA 161
Score = 30.7 bits (69), Expect = 1.8
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 280
H D+L++G G G + A +E G RV ++D
Sbjct: 128 HTDVLVVGAGPAGLAAA---REASRSGARVMLLDERA 161
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains;
transport, coiled coil, cytoskeleton, FAD, flavoprotein,
metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB:
2c4c_A* 2bra_A*
Length = 497
Score = 30.5 bits (68), Expect = 1.8
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 55 VDPAKTDEHYH-IKRAMRILKLD--FQKLWRNVQDPESRYQGNTLFPTHVDILIIGGGAI 111
V+ YH IK + + KL + P + T+ L++G G
Sbjct: 47 VESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQAC---TNTKCLVVGAGPC 103
Query: 112 GSSIAYFIKEKVLDGCRVAVVDR 134
G A E L G RV +V++
Sbjct: 104 GLRAAV---ELALLGARVVLVEK 123
Score = 30.5 bits (68), Expect = 1.8
Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 9/83 (10%)
Query: 199 VDPAKTDEHYH-IKRAMRILKLD--FQKLWRNVQDPESRYQGNTLFPTHVDILIIGGGAI 255
V+ YH IK + + KL + P + T+ L++G G
Sbjct: 47 VESGGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQGQAC---TNTKCLVVGAGPC 103
Query: 256 GSSIAYFIKEKVLDGCRVAVVDR 278
G A E L G RV +V++
Sbjct: 104 GLRAAV---ELALLGARVVLVEK 123
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 29.6 bits (67), Expect = 1.9
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+IG G G SI + G V VD +
Sbjct: 8 QFAVIGLGRFGGSIVKELHRM---GHEVLAVDIN 38
Score = 29.6 bits (67), Expect = 1.9
Identities = 10/34 (29%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+IG G G SI + G V VD +
Sbjct: 8 QFAVIGLGRFGGSIVKELHRM---GHEVLAVDIN 38
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 30.4 bits (69), Expect = 2.1
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
+L++G G+ G + + K+ G V +VD+
Sbjct: 121 TTQVLVVGAGSAGFNASLAAKKA---GANVILVDK 152
Score = 30.4 bits (69), Expect = 2.1
Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
+L++G G+ G + + K+ G V +VD+
Sbjct: 121 TTQVLVVGAGSAGFNASLAAKKA---GANVILVDK 152
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus
stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 455
Score = 30.2 bits (69), Expect = 2.2
Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 430 VDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAG 478
V+ L + N +G + N V + +T TF +IA G
Sbjct: 97 VEGLLKGNKVEIVKGE--AYFVDANTVRVVNGDSA-QTYTFKNAIIATG 142
>1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate
pathway, dehydrogenase, oxidoreductase; 2.00A
{Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A*
1e5q_A
Length = 450
Score = 30.3 bits (67), Expect = 2.3
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+L++G G + + + G +V V R
Sbjct: 6 VLMLGSGFVTRPTLDVLTDS---GIKVTVACRT 35
Score = 30.3 bits (67), Expect = 2.3
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+L++G G + + + G +V V R
Sbjct: 6 VLMLGSGFVTRPTLDVLTDS---GIKVTVACRT 35
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase;
HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2
c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 30.4 bits (68), Expect = 2.4
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 98 PTHVDILIIGGGAIGSSIAYF--IKEKVLDGCRVAVVDR 134
++ D+LI+G G G A + +V ++D+
Sbjct: 6 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK 44
Score = 30.4 bits (68), Expect = 2.4
Identities = 9/39 (23%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 242 PTHVDILIIGGGAIGSSIAYF--IKEKVLDGCRVAVVDR 278
++ D+LI+G G G A + +V ++D+
Sbjct: 6 ESYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDK 44
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein
complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A
{Pyrococcus horikoshii}
Length = 493
Score = 30.3 bits (68), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 136
VD+ IIGGG G A +++ VA+++
Sbjct: 108 VVDVAIIGGGPAGIGAALELQQ----YLTVALIEERG 140
Score = 30.3 bits (68), Expect = 2.4
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDF 280
VD+ IIGGG G A +++ VA+++
Sbjct: 108 VVDVAIIGGGPAGIGAALELQQ----YLTVALIEERG 140
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 30.1 bits (68), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 102 DILIIGGGAIGSSIAYFIKEKVLD-GCRVAVVD 133
DILIIGGG G AY G +V +V+
Sbjct: 24 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
Score = 30.1 bits (68), Expect = 2.4
Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 246 DILIIGGGAIGSSIAYFIKEKVLD-GCRVAVVD 277
DILIIGGG G AY G +V +V+
Sbjct: 24 DILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; 2.20A {Mycobacterium
avium}
Length = 407
Score = 30.2 bits (69), Expect = 2.5
Identities = 23/89 (25%), Positives = 35/89 (39%), Gaps = 17/89 (19%)
Query: 273 VAVVDRDFTVNYDLDEYARASTTL-SVGGLRQQFSLRENIEMSLFGAEFLRNIKHHCHVI 331
V V D++ V D DE+ R TT+ + L+ F EM F L+
Sbjct: 196 VPVRDQNGLVILDHDEHMRPDTTMEGLAKLKTAF--DGVGEMGGFDDVALQKYHW----- 248
Query: 332 GEDEPDVNFTP-NGYLFCASQ--DGAATL 357
++ + T N +S DGAA +
Sbjct: 249 -VEKINHVHTGGN-----SSGIVDGAALV 271
>3kw8_A Laccase, putative copper oxidase; two-domain laccase,
oxidoreductase, multicopper blue protein; HET: PG4 PGE;
2.29A {Streptomyces coelicolor}
Length = 276
Score = 30.0 bits (67), Expect = 2.6
Identities = 19/168 (11%), Positives = 37/168 (22%), Gaps = 28/168 (16%)
Query: 505 PVEPRKRYVYCFESPR-GPGVNTPMVIDTTGTYF--------------RREGL-GNYYIC 548
VEP Y + + + G + + G + R GL G +
Sbjct: 80 DVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVR 139
Query: 549 GKSPTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAI 608
K D + + +R A G +
Sbjct: 140 RKGDVL----------PDATHTIVFNDMTINNR--KPHTGPDFEATVGDRVEIVMITHGE 187
Query: 609 IGLHPSYHNIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDLSRF 656
H +A +G +++ A+ +
Sbjct: 188 YYHTFHMHGHRWADNRTGILTGPDDPSRVIDNKITGPADSFGFQIIAG 235
>2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate
dehydrogenase, oxidoreductase, ubiquitin-protein L
unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A
Length = 303
Score = 29.9 bits (68), Expect = 2.8
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I ++GGG +G + I K + R+ ++D
Sbjct: 17 ITVVGGGELGIACTLAISAKGI-ADRLVLLDLS 48
Score = 29.9 bits (68), Expect = 2.8
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I ++GGG +G + I K + R+ ++D
Sbjct: 17 ITVVGGGELGIACTLAISAKGI-ADRLVLLDLS 48
>3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor;
HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1
Length = 330
Score = 30.0 bits (68), Expect = 2.8
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 78 QKLWRNVQDPESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
KL ++ + N I ++G A+G + A + K L VA+VD
Sbjct: 6 DKLIGHLATSQEPRSYNK-------ITVVGCDAVGMADAISVLMKDL-ADEVALVDVM 55
Score = 30.0 bits (68), Expect = 2.8
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 8/58 (13%)
Query: 222 QKLWRNVQDPESRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
KL ++ + N I ++G A+G + A + K L VA+VD
Sbjct: 6 DKLIGHLATSQEPRSYNK-------ITVVGCDAVGMADAISVLMKDL-ADEVALVDVM 55
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 29.8 bits (68), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
H D+++IGGG G A E+ G V ++D+
Sbjct: 26 HYDVIVIGGGPSGLMAAIGAAEE---GANVLLLDK 57
Score = 29.8 bits (68), Expect = 2.9
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
H D+++IGGG G A E+ G V ++D+
Sbjct: 26 HYDVIVIGGGPSGLMAAIGAAEE---GANVLLLDK 57
>4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex,
fragment-based LEAD genera inhibitors; HET: 52C; 1.75A
{Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A*
4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A*
4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A*
5ldh_A* 1ldm_A* ...
Length = 331
Score = 29.8 bits (68), Expect = 2.9
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCR-VAVVDRD 135
I ++G GA+G + A I K L +A+VD
Sbjct: 22 ITVVGVGAVGMACAISILMKDL--ADELALVDVI 53
Score = 29.8 bits (68), Expect = 2.9
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCR-VAVVDRD 279
I ++G GA+G + A I K L +A+VD
Sbjct: 22 ITVVGVGAVGMACAISILMKDL--ADELALVDVI 53
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD,
oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 29.9 bits (68), Expect = 3.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 94 NTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVV 132
NTL D+LIIG GA G S+A ++ D +V V+
Sbjct: 2 NTLPEHSCDVLIIGSGAAGLSLAL----RLADQHQVIVL 36
Score = 29.9 bits (68), Expect = 3.0
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 4/39 (10%)
Query: 238 NTLFPTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVV 276
NTL D+LIIG GA G S+A ++ D +V V+
Sbjct: 2 NTLPEHSCDVLIIGSGAAGLSLAL----RLADQHQVIVL 36
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide
dehydrogenase, pyruvate dehydrogenase, alpha keto acid
dehydrogenase; HET: FAD; 2.40A {Mycobacterium
tuberculosis} PDB: 3ii4_A*
Length = 464
Score = 29.8 bits (68), Expect = 3.0
Identities = 15/50 (30%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
Query: 430 VDFLRRRNNQVHYEGYDDGEYHSVNECVVRDEKGELKTITFAICVIAAGA 479
V FL ++N GY G + N +V G +++TF +IA G+
Sbjct: 97 VHFLMKKNKITEIHGY--GTFADANTLLVDLNDGGTESVTFDNAIIATGS 144
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 30.0 bits (67), Expect = 3.0
Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ ++I+GGG G + AY+ + + + +++
Sbjct: 3 SSKRLVIVGGGITGLAAAYYAE-RAFPDLNITLLEAG 38
Score = 30.0 bits (67), Expect = 3.0
Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ ++I+GGG G + AY+ + + + +++
Sbjct: 3 SSKRLVIVGGGITGLAAAYYAE-RAFPDLNITLLEAG 38
>1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis,
hyperthermophiles, thermotoga MA protein stability; HET:
FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5
d.162.1.1
Length = 319
Score = 29.8 bits (68), Expect = 3.0
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
I I+G G +GSS A+ + K + ++D D
Sbjct: 3 IGIVGLGRVGSSTAFALLMKGF-AREMVLIDVD 34
Score = 29.8 bits (68), Expect = 3.0
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
I I+G G +GSS A+ + K + ++D D
Sbjct: 3 IGIVGLGRVGSSTAFALLMKGF-AREMVLIDVD 34
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 30.1 bits (67), Expect = 3.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ + +IG G G + AY +K G V V + +
Sbjct: 11 SSAKRVAVIGAGVSGLAAAYKLKIH---GLNVTVFEAE 45
Score = 30.1 bits (67), Expect = 3.1
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ + +IG G G + AY +K G V V + +
Sbjct: 11 SSAKRVAVIGAGVSGLAAAYKLKIH---GLNVTVFEAE 45
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann
fold, oxidoreductase (AC NADH), NADH binding,
oxidoreductase; HET: NAD; 2.16A {Dictyostelium
discoideum}
Length = 251
Score = 29.6 bits (67), Expect = 3.2
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 103 ILIIGG-GAIGSSIA-YFIKEKVLDGCRVAVVDRD 135
IL++GG GA+G+ + +F + +D
Sbjct: 25 ILVLGGSGALGAEVVKFFKSK----SWNTISIDFR 55
Score = 29.6 bits (67), Expect = 3.2
Identities = 9/35 (25%), Positives = 17/35 (48%), Gaps = 6/35 (17%)
Query: 247 ILIIGG-GAIGSSIA-YFIKEKVLDGCRVAVVDRD 279
IL++GG GA+G+ + +F + +D
Sbjct: 25 ILVLGGSGALGAEVVKFFKSK----SWNTISIDFR 55
>3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD,
oxidoreductase, phosphoprotein; 1.80A {Staphylococcus
aureus} PDB: 3d4p_A* 3h3j_A*
Length = 317
Score = 29.8 bits (68), Expect = 3.3
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+++IG GA+GSS A+ + + + + ++D D
Sbjct: 9 VVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD 40
Score = 29.8 bits (68), Expect = 3.3
Identities = 10/33 (30%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+++IG GA+GSS A+ + + + + ++D D
Sbjct: 9 VVLIGNGAVGSSYAFSLVNQSI-VDELVIIDLD 40
>1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP
NAD; 2.50A {Geobacillus stearothermophilus} SCOP:
c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A*
Length = 316
Score = 29.4 bits (67), Expect = 3.4
Identities = 6/33 (18%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+++IG G +G+S + + + + + ++D +
Sbjct: 9 VVVIGAGFVGASYVFALMNQGI-ADEIVLIDAN 40
Score = 29.4 bits (67), Expect = 3.4
Identities = 6/33 (18%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+++IG G +G+S + + + + + ++D +
Sbjct: 9 VVVIGAGFVGASYVFALMNQGI-ADEIVLIDAN 40
>1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD;
2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1
Length = 318
Score = 29.4 bits (67), Expect = 3.4
Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
++++G GA+GSS A+ + ++ + +VD
Sbjct: 8 VVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVV 39
Score = 29.4 bits (67), Expect = 3.4
Identities = 9/33 (27%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
++++G GA+GSS A+ + ++ + +VD
Sbjct: 8 VVLVGDGAVGSSYAFAMAQQGI-AEEFVIVDVV 39
>1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural
genomics, secsg, protein struc initiative, PSI,
oxidoreductase; 3.01A {Clostridium thermocellum} SCOP:
c.2.1.5 d.162.1.1
Length = 318
Score = 29.4 bits (67), Expect = 3.4
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ IIG G +G+S A+ + + + ++D
Sbjct: 10 VAIIGAGFVGASAAFTMALRQT-ANELVLIDVF 41
Score = 29.4 bits (67), Expect = 3.4
Identities = 8/33 (24%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ IIG G +G+S A+ + + + ++D
Sbjct: 10 VAIIGAGFVGASAAFTMALRQT-ANELVLIDVF 41
>3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A
{Bacillus subtilis} PDB: 3pqf_A* 3pqd_A*
Length = 326
Score = 29.4 bits (67), Expect = 3.5
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ +IG G +GSS A+ + + + + V+D +
Sbjct: 8 VALIGAGFVGSSYAFALINQGI-TDELVVIDVN 39
Score = 29.4 bits (67), Expect = 3.5
Identities = 9/33 (27%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ +IG G +GSS A+ + + + + V+D +
Sbjct: 8 VALIGAGFVGSSYAFALINQGI-TDELVVIDVN 39
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 29.7 bits (67), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
P+HV L+IGGG + A I+ + RV +V D
Sbjct: 9 PSHVPFLLIGGGTAAFAAARSIRARDPGA-RVLIVSED 45
Score = 29.7 bits (67), Expect = 3.6
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
P+HV L+IGGG + A I+ + RV +V D
Sbjct: 9 PSHVPFLLIGGGTAAFAAARSIRARDPGA-RVLIVSED 45
>2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold,
cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A
{Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A*
Length = 326
Score = 29.4 bits (67), Expect = 3.7
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
++++G GA+GSS AY + + + + +VD
Sbjct: 12 VILVGDGAVGSSYAYAMVLQGI-AQEIGIVDIF 43
Score = 29.4 bits (67), Expect = 3.7
Identities = 10/33 (30%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
++++G GA+GSS AY + + + + +VD
Sbjct: 12 VILVGDGAVGSSYAYAMVLQGI-AQEIGIVDIF 43
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 29.4 bits (67), Expect = 3.8
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 100 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
+ + +IIG GA G A + + G V V D
Sbjct: 4 YSENIIIGAGAAGLFCAAQLAKL---GKSVTVFDN 35
Score = 29.4 bits (67), Expect = 3.8
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)
Query: 244 HVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
+ + +IIG GA G A + + G V V D
Sbjct: 4 YSENIIIGAGAAGLFCAAQLAKL---GKSVTVFDN 35
>2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle;
HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A*
3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A
Length = 310
Score = 29.4 bits (67), Expect = 3.8
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCR-VAVVDRD 135
+ I+G G +GS+ AY + + R V +VD D
Sbjct: 3 VGIVGSGMVGSATAYALALLGV--AREVVLVDLD 34
Score = 29.4 bits (67), Expect = 3.8
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCR-VAVVDRD 279
+ I+G G +GS+ AY + + R V +VD D
Sbjct: 3 VGIVGSGMVGSATAYALALLGV--AREVVLVDLD 34
>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain
dehydrogenase, HUM structural genomics, structural
genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens}
SCOP: c.2.1.2
Length = 272
Score = 29.1 bits (66), Expect = 3.8
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 103 ILIIGGGA-IGSSIAY-FIKEKVLDGCRVAVVDRD 135
+LI G G IG AY F K ++ + D +
Sbjct: 34 VLITGAGHGIGRLTAYEFAKL----KSKLVLWDIN 64
Score = 29.1 bits (66), Expect = 3.8
Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 6/35 (17%)
Query: 247 ILIIGGGA-IGSSIAY-FIKEKVLDGCRVAVVDRD 279
+LI G G IG AY F K ++ + D +
Sbjct: 34 VLITGAGHGIGRLTAYEFAKL----KSKLVLWDIN 64
>3k8a_A Putative primosomal replication protein; beta-barrel, OB-fold, DNA
binding protein; 2.70A {Neisseria gonorrhoeae fa 1090}
Length = 103
Score = 27.8 bits (62), Expect = 3.8
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 460 DEKGELKTITFAICVIAAGAYSGQVARMLKIGDKNQEQGFL 500
+E G+ + I G + + + GD +GFL
Sbjct: 43 EENGQQCLVQLEIPARILGRQAEEWQ--YRQGDCATVEGFL 81
>1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET:
NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5
d.162.1.1 PDB: 1lth_T*
Length = 319
Score = 29.4 bits (67), Expect = 3.9
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+ +IG GA+GS++A+ ++ + + + D
Sbjct: 10 LAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIA 41
Score = 29.4 bits (67), Expect = 3.9
Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
+ +IG GA+GS++A+ ++ + + + D
Sbjct: 10 LAVIGAGAVGSTLAFAAAQRGI-AREIVLEDIA 41
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 29.2 bits (66), Expect = 4.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 101 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
D+++ G G G + + G V V++R
Sbjct: 42 ADVVVAGYGIAGVAASIEAARA---GADVLVLER 72
Score = 29.2 bits (66), Expect = 4.5
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 245 VDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
D+++ G G G + + G V V++R
Sbjct: 42 ADVVVAGYGIAGVAASIEAARA---GADVLVLER 72
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural
genomi research consortium, nysgrc; HET: FDA; 2.51A
{Sinorhizobium meliloti}
Length = 417
Score = 29.0 bits (66), Expect = 5.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 99 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 134
D++IIG GA G A ++ G RV V+D
Sbjct: 26 EKQDVVIIGAGAAGMMCAIEAGKR---GRRVLVIDH 58
Score = 29.0 bits (66), Expect = 5.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 3/36 (8%)
Query: 243 THVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDR 278
D++IIG GA G A ++ G RV V+D
Sbjct: 26 EKQDVVIIGAGAAGMMCAIEAGKR---GRRVLVIDH 58
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 28.6 bits (63), Expect = 6.9
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
IL+IG G G A +K + + +V+++
Sbjct: 3 ILVIGAGPAGLVFASQLK-QARPLWAIDIVEKN 34
Score = 28.6 bits (63), Expect = 6.9
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
IL+IG G G A +K + + +V+++
Sbjct: 3 ILVIGAGPAGLVFASQLK-QARPLWAIDIVEKN 34
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 28.7 bits (64), Expect = 7.2
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 98 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD-------FTVNYD 141
I IIG G G + ++++ +++R + NY
Sbjct: 4 SKDSRIAIIGAGPAGLAAGMYLEQA--GFHDYTILERTDHVGGKCHSPNYH 52
Score = 28.7 bits (64), Expect = 7.2
Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 242 PTHVDILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD-------FTVNYD 285
I IIG G G + ++++ +++R + NY
Sbjct: 4 SKDSRIAIIGAGPAGLAAGMYLEQA--GFHDYTILERTDHVGGKCHSPNYH 52
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase,
oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
PDB: 3a63_A* 3abi_A*
Length = 365
Score = 28.4 bits (63), Expect = 7.4
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRDFTVNYDLDEYARASTTLSV 298
+LI+G G IG +IA+ +K++ V + D + N +L++ +T L V
Sbjct: 19 VLILGAGNIGRAIAWDLKDEF----DVYIGDVN---NENLEKVKEFATPLKV 63
Score = 28.4 bits (63), Expect = 8.5
Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
+LI+G G IG +IA+ +K++ V + D +
Sbjct: 19 VLILGAGNIGRAIAWDLKDEF----DVYIGDVN 47
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin
biosynthesis, NAD, oxidoreducta porphyrin biosynthesis;
2.30A {Bacillus megaterium}
Length = 223
Score = 28.0 bits (63), Expect = 7.7
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 89 SRYQGNTLFPTHVD-----ILIIGGGAIGSS-IAYFIKEKVLDGCRVAVVDRDFT 137
+G ++ +D +L++GGG I + I F++E G + VV +
Sbjct: 15 GHIEGRHMYTVMLDLKGRSVLVVGGGTIATRRIKGFLQE----GAAITVVAPTVS 65
Score = 28.0 bits (63), Expect = 7.7
Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 10/55 (18%)
Query: 233 SRYQGNTLFPTHVD-----ILIIGGGAIGSS-IAYFIKEKVLDGCRVAVVDRDFT 281
+G ++ +D +L++GGG I + I F++E G + VV +
Sbjct: 15 GHIEGRHMYTVMLDLKGRSVLVVGGGTIATRRIKGFLQE----GAAITVVAPTVS 65
>2qgm_A Succinoglycan biosynthesis protein; Q817Z0, NESG, X-RAY, BCR136,
structural genomics, PSI-2, protein structure
initiative; 1.70A {Bacillus cereus atcc 14579} SCOP:
c.150.1.3
Length = 445
Score = 28.7 bits (63), Expect = 7.8
Identities = 20/113 (17%), Positives = 35/113 (30%), Gaps = 3/113 (2%)
Query: 560 VDNLDVDYEYFNEN--VWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENA-IIGLHPSYH 616
D+ E F VW H H K + K+ AG + D N IG +
Sbjct: 287 ADHAMWAQETFGGKTMVWAHNIHIAKGIIDEKLYPYVAGQFLKERLDNNYVTIGSTTTEG 346
Query: 617 NIHFATGFSGHGIQQAPAIGRAVSELILDAEFKTIDLSRFLLERVARRQEARE 669
N + ++ + + + FLL+ + +A +
Sbjct: 347 NFTLYSEYNPSTGGKITTDTIPQDVKSFNYTLGKVPYKMFLLDNRHLKGQAEK 399
>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein
structure initiative; 2.20A {Lactobacillus plantarum}
Length = 324
Score = 28.4 bits (64), Expect = 8.0
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 12/64 (18%)
Query: 76 DFQKLWRNVQDPE---SRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLD--GCRVA 130
+ W N + +TL + LI G G IG S+A G V
Sbjct: 112 GYHAAWLNQRGARQWALPMTTSTLTGQQL--LIYGTGQIGQSLA-----AKASALGMHVI 164
Query: 131 VVDR 134
V+
Sbjct: 165 GVNT 168
Score = 28.4 bits (64), Expect = 8.0
Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 12/64 (18%)
Query: 220 DFQKLWRNVQDPE---SRYQGNTLFPTHVDILIIGGGAIGSSIAYFIKEKVLD--GCRVA 274
+ W N + +TL + LI G G IG S+A G V
Sbjct: 112 GYHAAWLNQRGARQWALPMTTSTLTGQQL--LIYGTGQIGQSLA-----AKASALGMHVI 164
Query: 275 VVDR 278
V+
Sbjct: 165 GVNT 168
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 28.6 bits (64), Expect = 8.2
Identities = 12/80 (15%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 139 NYDLDEDGSNPGDQE---SSNDKDRISTSGQPTQESKVSD--PHKALKETTNRYSFNDAE 193
N DLD+ + E + ++ ++ +E+ + K + +T Y F+ +
Sbjct: 9 NLDLDDYELDEEPGEEELTEEQEEEFRSAVATVRETLLGVPISEKEIADTVWYYYFDVEK 68
Query: 194 APSGYVDPAKTDEHYHIKRA 213
+ + + A + K+
Sbjct: 69 SVNYLLQKASSKAGAKEKQN 88
>2aef_A Calcium-gated potassium channel MTHK; rossmann fold,
helix-turn-helix, Ca2+ binding, flexible interface;
1.70A {Methanothermobacterthermautotrophicus} PDB:
2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A
Length = 234
Score = 28.1 bits (63), Expect = 8.6
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 5/33 (15%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
++I G + L G V V+ D
Sbjct: 12 VVICGWSESTLECL-----RELRGSEVFVLAED 39
Score = 28.1 bits (63), Expect = 8.6
Identities = 7/33 (21%), Positives = 11/33 (33%), Gaps = 5/33 (15%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
++I G + L G V V+ D
Sbjct: 12 VVICGWSESTLECL-----RELRGSEVFVLAED 39
>2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative; HET: NAD; 2.50A
{Legionella pneumophila subsp}
Length = 480
Score = 28.5 bits (63), Expect = 9.0
Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 103 ILIIGGGAIGSSIAYFIKEKV-LDGCRVAVVDRDFTVNYDLDEDG 146
+I+G G +G ++ I EK + +V ++ + T + G
Sbjct: 16 FVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEGTKVDVAQQYG 60
>1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific
opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter
SP} SCOP: a.100.1.5 c.2.1.6
Length = 359
Score = 28.1 bits (62), Expect = 9.4
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 103 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 135
++G G G + A ++ K G V D D
Sbjct: 7 YAVLGLGNGGHAFAAYLALK---GQSVLAWDID 36
Score = 28.1 bits (62), Expect = 9.4
Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 3/33 (9%)
Query: 247 ILIIGGGAIGSSIAYFIKEKVLDGCRVAVVDRD 279
++G G G + A ++ K G V D D
Sbjct: 7 YAVLGLGNGGHAFAAYLALK---GQSVLAWDID 36
>2jak_A Serine/threonine-protein phosphatase 2A 56 kDa RE subunit gamma
isoform; B56G, PP2A, PPP2R5C, phosphorylation; 2.60A
{Homo sapiens} SCOP: a.118.1.20
Length = 392
Score = 28.2 bits (62), Expect = 9.7
Identities = 12/60 (20%), Positives = 19/60 (31%)
Query: 552 PTPEQEPPVDNLDVDYEYFNENVWPHLAHRVKAFEELKVSNAWAGYYDFNYFDENAIIGL 611
P + + E E WPHL + F S + Y D+ ++ L
Sbjct: 120 PPSSNPTGAEFDPEEDEPTLEAAWPHLQLVYEFFLRFLESPDFQPNIAKKYIDQKFVLQL 179
>2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance,
NAD, cytoplasm, mesophilic, glycolysis; 2.50A
{Deinococcus radiodurans}
Length = 304
Score = 27.8 bits (63), Expect = 9.9
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 103 ILIIGGGAIGSSIAYFI 119
+ ++G G +GS+ A+ +
Sbjct: 3 VGVVGTGFVGSTAAFAL 19
Score = 27.8 bits (63), Expect = 9.9
Identities = 5/17 (29%), Positives = 12/17 (70%)
Query: 247 ILIIGGGAIGSSIAYFI 263
+ ++G G +GS+ A+ +
Sbjct: 3 VGVVGTGFVGSTAAFAL 19
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.136 0.410
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,979,721
Number of extensions: 702692
Number of successful extensions: 2536
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2449
Number of HSP's successfully gapped: 337
Length of query: 673
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 573
Effective length of database: 3,909,693
Effective search space: 2240254089
Effective search space used: 2240254089
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (27.2 bits)