BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy10286
(748 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 224 bits (572), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 114/270 (42%), Positives = 151/270 (55%), Gaps = 3/270 (1%)
Query: 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVR-- 533
+ VE +DP W +++ R V + +R+Y GGY+G RLS+VE D
Sbjct: 30 IDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTADE 89
Query: 534 -RVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH 592
VW V+PM +R GA L D +YV GG+DG ++E Y+P+ DQW ++ MQ
Sbjct: 90 DGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTA 149
Query: 593 RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKI 652
R G++ +Y LGG+DGL+I +SVE+YDP T WT+V PM TKR GVA LN+ I
Sbjct: 150 REGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHI 209
Query: 653 YVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLP 712
YV GG+DG L SVE Y+ TD W + SM R V G+L+AI GYDG S L
Sbjct: 210 YVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLS 269
Query: 713 TVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
++E YDP DSW V M GV V+
Sbjct: 270 SIECYDPIIDSWEVVTSMGTQRCDAGVCVL 299
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/178 (32%), Positives = 74/178 (41%), Gaps = 50/178 (28%)
Query: 615 SIFDSVERYDPKTDEWT------------------------------------------- 631
S D VE+YDPKT EW+
Sbjct: 28 SPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSLHDRIYVIGGYDGRSRLSSVECLDYTA 87
Query: 632 -------SVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN 684
SV PM +R G L + IYV GG+DG+ S+E YDP D+W M+ M
Sbjct: 88 DEDGVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQ 147
Query: 685 VMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
R LV G ++ +GGYDG++ L +VE YDP T W V PM G GV ++
Sbjct: 148 TAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALL 205
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 9/143 (6%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQ----MAEEETLSNAVISTKSCLTKAG---- 473
G I+ +GG + L++VE +DP G W MA + + + + G
Sbjct: 160 GVIYCLGGYDGL-NILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVGGFDGT 218
Query: 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVR 533
LS+VE ++ W +M+ R VG V++ RLYA GY+G+ LS++E +DP+
Sbjct: 219 AHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPII 278
Query: 534 RVWNKVSPMCFKRSAVGAAALND 556
W V+ M +R G L +
Sbjct: 279 DSWEVVTSMGTQRCDAGVCVLRE 301
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 161/298 (54%), Gaps = 14/298 (4%)
Query: 411 KTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRW-QMAEEETLSNAV------- 462
+ P R V I+ GG + SLS +E ++P G W ++A+ + + +
Sbjct: 8 QAVPCRAPKVGRLIYTAGGYFR--QSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGG 65
Query: 463 ----ISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN 518
+ ++ S ++ ++P+ +W +MS+ R+R+GV V+ +YA GG +
Sbjct: 66 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSH 125
Query: 519 GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEP 578
G S+VE ++P R W+ V+PM +R VG A LN LY GG+DG + LN+ ECY P
Sbjct: 126 GCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYP 185
Query: 579 DKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLT 638
++++WR++ M RS GV + +YA GG+DG +SVERYD +T+ WT V PM
Sbjct: 186 ERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRH 245
Query: 639 KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM 696
R LG+ KIYV GGYDG FL SVE YDP +D W + M RS V + M
Sbjct: 246 HRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAVTM 303
Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 149/271 (54%), Gaps = 4/271 (1%)
Query: 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN----GSERLSTVEEFD 530
SLS +E ++P G W + + RS + V+ LYA GG N G+ S ++ ++
Sbjct: 31 SLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 90
Query: 531 PVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ 590
P+ W+ + M R+ +G ++ +Y GG G ++VE YEP++D+W +V M
Sbjct: 91 PMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPML 150
Query: 591 KHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN 650
R GV + +YA+GG DG + +S E Y P+ +EW + PM T R GV L+N
Sbjct: 151 TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHN 210
Query: 651 KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSN 710
IY GGYDG L SVE YD T+ W +A M RS + + + GK++ +GGYDG +
Sbjct: 211 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTF 270
Query: 711 LPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
L +VE YDP +D+W+ V M + GVGV V
Sbjct: 271 LDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 301
Score = 113 bits (282), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 5/199 (2%)
Query: 551 AAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGG 610
A + +Y GGY SL+ +E Y P W + +Q RS +YA+GG
Sbjct: 14 APKVGRLIYTAGGYF-RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGG 72
Query: 611 H----DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQS 666
DG + +++ Y+P T++W+ M R R+GV ++ IY GG G I S
Sbjct: 73 RNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSS 132
Query: 667 VEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726
VE Y+P DEW ++A M R V + L+A+GG+DG + L + E Y P + W
Sbjct: 133 VERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM 192
Query: 727 VAPMCAHEGGVGVGVIPIC 745
+ PM G GV V+ C
Sbjct: 193 ITPMNTIRSGAGVCVLHNC 211
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 207 bits (527), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/298 (36%), Positives = 161/298 (54%), Gaps = 14/298 (4%)
Query: 411 KTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRW-QMAEEETLSNAV------- 462
+ P R V I+ GG + SLS +E ++P G W ++A+ + + +
Sbjct: 7 QAVPCRAPKVGRLIYTAGGYFR--QSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGG 64
Query: 463 ----ISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN 518
+ ++ S ++ ++P+ +W +MS+ R+R+GV V+ +YA GG +
Sbjct: 65 LLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSH 124
Query: 519 GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEP 578
G S+VE ++P R W+ V+PM +R VG A LN LY GG+DG + LN+ ECY P
Sbjct: 125 GCIHHSSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYP 184
Query: 579 DKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLT 638
++++WR++ M RS GV + +YA GG+DG +SVERYD +T+ WT V PM
Sbjct: 185 ERNEWRMITPMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRH 244
Query: 639 KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM 696
R LG+ KIYV GGYDG FL SVE YDP +D W + M RS V + M
Sbjct: 245 HRSALGITVHQGKIYVLGGYDGHTFLDSVECYDPDSDTWSEVTRMTSGRSGVGVAVTM 302
Score = 189 bits (479), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 100/271 (36%), Positives = 149/271 (54%), Gaps = 4/271 (1%)
Query: 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN----GSERLSTVEEFD 530
SLS +E ++P G W + + RS + V+ LYA GG N G+ S ++ ++
Sbjct: 30 SLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 89
Query: 531 PVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ 590
P+ W+ + M R+ +G ++ +Y GG G ++VE YEP++D+W +V M
Sbjct: 90 PMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSSVERYEPERDEWHLVAPML 149
Query: 591 KHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN 650
R GV + +YA+GG DG + +S E Y P+ +EW + PM T R GV L+N
Sbjct: 150 TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITPMNTIRSGAGVCVLHN 209
Query: 651 KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSN 710
IY GGYDG L SVE YD T+ W +A M RS + + + GK++ +GGYDG +
Sbjct: 210 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMRHHRSALGITVHQGKIYVLGGYDGHTF 269
Query: 711 LPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
L +VE YDP +D+W+ V M + GVGV V
Sbjct: 270 LDSVECYDPDSDTWSEVTRMTSGRSGVGVAV 300
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 96/199 (48%), Gaps = 5/199 (2%)
Query: 551 AAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGG 610
A + +Y GGY SL+ +E Y P W + +Q RS +YA+GG
Sbjct: 13 APKVGRLIYTAGGYF-RQSLSYLEAYNPSNGSWLRLADLQVPRSGLAGCVVGGLLYAVGG 71
Query: 611 H----DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQS 666
DG + +++ Y+P T++W+ M R R+GV ++ IY GG G I S
Sbjct: 72 RNNSPDGNTDSSALDCYNPMTNQWSPCASMSVPRNRIGVGVIDGHIYAVGGSHGCIHHSS 131
Query: 667 VEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726
VE Y+P DEW ++A M R V + L+A+GG+DG + L + E Y P + W
Sbjct: 132 VERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRM 191
Query: 727 VAPMCAHEGGVGVGVIPIC 745
+ PM G GV V+ C
Sbjct: 192 ITPMNTIRSGAGVCVLHNC 210
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 157/281 (55%), Gaps = 14/281 (4%)
Query: 424 IFAVGGLTKAGDSLSTVEVFDPLVGRW-QMAEEETLSNAV-----------ISTKSCLTK 471
I+ GG + SLS +E ++P G W ++A+ + + + + ++
Sbjct: 28 IYTAGGYFR--QSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 85
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP 531
S ++ ++P+ +W MS+ R+R+GV V+ +YA GG +G ++VE ++P
Sbjct: 86 GNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEP 145
Query: 532 VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591
R W+ V+PM +R VG A LN LY GG+DG + LN+ ECY P++++WR++ +M
Sbjct: 146 ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT 205
Query: 592 HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK 651
RS GV + +YA GG+DG +SVERYD +T+ WT V PM +R LG+ +
Sbjct: 206 IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGR 265
Query: 652 IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVAL 692
IYV GGYDG FL SVE YDP TD W + M RS V +
Sbjct: 266 IYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGV 306
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 149/271 (54%), Gaps = 4/271 (1%)
Query: 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN----GSERLSTVEEFD 530
SLS +E ++P G W + + RS + V+ LYA GG N G+ S ++ ++
Sbjct: 38 SLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 97
Query: 531 PVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ 590
P+ W+ +PM R+ +G ++ +Y GG G N+VE YEP++D+W +V M
Sbjct: 98 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML 157
Query: 591 KHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN 650
R GV + +YA+GG DG + +S E Y P+ +EW + M T R GV L+N
Sbjct: 158 TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHN 217
Query: 651 KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSN 710
IY GGYDG L SVE YD T+ W +A M RS + + + G+++ +GGYDG +
Sbjct: 218 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTF 277
Query: 711 LPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
L +VE YDP TD+W+ V M + GVGV V
Sbjct: 278 LDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 308
Score = 168 bits (425), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 129/235 (54%), Gaps = 5/235 (2%)
Query: 511 LYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGY----DG 566
+Y GGY + LS +E ++P W +++ + RS + + LY GG DG
Sbjct: 28 IYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 86
Query: 567 VSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPK 626
+ + ++CY P +QW M R+ GV D ++YA+GG G +SVERY+P+
Sbjct: 87 NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE 146
Query: 627 TDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM 686
DEW V PMLT+R +GVA LN +Y GG+DG L S E Y P +EW+MI +MN +
Sbjct: 147 RDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI 206
Query: 687 RSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
RS + ++A GGYDG L +VE YD T++W FVAPM +G+ V
Sbjct: 207 RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV 261
Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 9/185 (4%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE---ETLSNAVISTKSCLTKAG----- 473
GHI+AVGG + ++VE ++P W + + V L G
Sbjct: 123 GHIYAVGG-SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT 181
Query: 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVR 533
+ L++ E + P W+M AM+ +RS GV V+ N +YA GGY+G ++L++VE +D
Sbjct: 182 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVET 241
Query: 534 RVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHR 593
W V+PM +RSA+G ++YV GGYDG + L++VECY+PD D W V M R
Sbjct: 242 ETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGR 301
Query: 594 SAGGV 598
S GV
Sbjct: 302 SGVGV 306
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 558 LYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGH----DG 613
+Y GGY SL+ +E Y P W + +Q RS +YA+GG DG
Sbjct: 28 IYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 86
Query: 614 LSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPI 673
+ +++ Y+P T++W+ PM R R+GV ++ IY GG G I SVE Y+P
Sbjct: 87 NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE 146
Query: 674 TDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAH 733
DEW ++A M R V + L+A+GG+DG + L + E Y P + W + M
Sbjct: 147 RDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI 206
Query: 734 EGGVGVGVIPIC 745
G GV V+ C
Sbjct: 207 RSGAGVCVLHNC 218
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 424 IFAVGGLTKAGDSLSTVEVFDPLVGRWQM--AEEETLSNA-VISTKSCLTKAG-----DS 475
++AVGG + L++ E + P W+M A S A V +C+ AG D
Sbjct: 172 LYAVGGFDGT-NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 230
Query: 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV 535
L++VE +D W M RS +G+ V + R+Y GGY+G L +VE +DP
Sbjct: 231 LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 290
Query: 536 WNKVSPMCFKRSAVGAA 552
W++V+ M RS VG A
Sbjct: 291 WSEVTRMTSGRSGVGVA 307
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 204 bits (520), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 103/281 (36%), Positives = 157/281 (55%), Gaps = 14/281 (4%)
Query: 424 IFAVGGLTKAGDSLSTVEVFDPLVGRW-QMAEEETLSNAV-----------ISTKSCLTK 471
I+ GG + SLS +E ++P G W ++A+ + + + + ++
Sbjct: 27 IYTAGGYFR--QSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP 531
S ++ ++P+ +W MS+ R+R+GV V+ +YA GG +G ++VE ++P
Sbjct: 85 GNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEP 144
Query: 532 VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591
R W+ V+PM +R VG A LN LY GG+DG + LN+ ECY P++++WR++ +M
Sbjct: 145 ERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT 204
Query: 592 HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK 651
RS GV + +YA GG+DG +SVERYD +T+ WT V PM +R LG+ +
Sbjct: 205 IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGR 264
Query: 652 IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVAL 692
IYV GGYDG FL SVE YDP TD W + M RS V +
Sbjct: 265 IYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGRSGVGV 305
Score = 190 bits (482), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 101/271 (37%), Positives = 149/271 (54%), Gaps = 4/271 (1%)
Query: 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN----GSERLSTVEEFD 530
SLS +E ++P G W + + RS + V+ LYA GG N G+ S ++ ++
Sbjct: 37 SLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 96
Query: 531 PVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ 590
P+ W+ +PM R+ +G ++ +Y GG G N+VE YEP++D+W +V M
Sbjct: 97 PMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML 156
Query: 591 KHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN 650
R GV + +YA+GG DG + +S E Y P+ +EW + M T R GV L+N
Sbjct: 157 TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHN 216
Query: 651 KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSN 710
IY GGYDG L SVE YD T+ W +A M RS + + + G+++ +GGYDG +
Sbjct: 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTF 276
Query: 711 LPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
L +VE YDP TD+W+ V M + GVGV V
Sbjct: 277 LDSVECYDPDTDTWSEVTRMTSGRSGVGVAV 307
Score = 167 bits (424), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 90/235 (38%), Positives = 129/235 (54%), Gaps = 5/235 (2%)
Query: 511 LYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGY----DG 566
+Y GGY + LS +E ++P W +++ + RS + + LY GG DG
Sbjct: 27 IYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 567 VSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPK 626
+ + ++CY P +QW M R+ GV D ++YA+GG G +SVERY+P+
Sbjct: 86 NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE 145
Query: 627 TDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM 686
DEW V PMLT+R +GVA LN +Y GG+DG L S E Y P +EW+MI +MN +
Sbjct: 146 RDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI 205
Query: 687 RSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
RS + ++A GGYDG L +VE YD T++W FVAPM +G+ V
Sbjct: 206 RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV 260
Score = 119 bits (297), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 67/185 (36%), Positives = 99/185 (53%), Gaps = 9/185 (4%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE---ETLSNAVISTKSCLTKAG----- 473
GHI+AVGG + ++VE ++P W + + V L G
Sbjct: 122 GHIYAVGG-SHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGT 180
Query: 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVR 533
+ L++ E + P W+M AM+ +RS GV V+ N +YA GGY+G ++L++VE +D
Sbjct: 181 NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVET 240
Query: 534 RVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHR 593
W V+PM +RSA+G ++YV GGYDG + L++VECY+PD D W V M R
Sbjct: 241 ETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRMTSGR 300
Query: 594 SAGGV 598
S GV
Sbjct: 301 SGVGV 305
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 94/192 (48%), Gaps = 5/192 (2%)
Query: 558 LYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGH----DG 613
+Y GGY SL+ +E Y P W + +Q RS +YA+GG DG
Sbjct: 27 IYTAGGYF-RQSLSYLEAYNPSDGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 614 LSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPI 673
+ +++ Y+P T++W+ PM R R+GV ++ IY GG G I SVE Y+P
Sbjct: 86 NTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE 145
Query: 674 TDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAH 733
DEW ++A M R V + L+A+GG+DG + L + E Y P + W + M
Sbjct: 146 RDEWHLVAPMLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI 205
Query: 734 EGGVGVGVIPIC 745
G GV V+ C
Sbjct: 206 RSGAGVCVLHNC 217
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 68/137 (49%), Gaps = 9/137 (6%)
Query: 424 IFAVGGLTKAGDSLSTVEVFDPLVGRWQM--AEEETLSNA-VISTKSCLTKAG-----DS 475
++AVGG + L++ E + P W+M A S A V +C+ AG D
Sbjct: 171 LYAVGGFDGT-NRLNSAECYYPERNEWRMITAMNTIRSGAGVCVLHNCIYAAGGYDGQDQ 229
Query: 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV 535
L++VE +D W M RS +G+ V + R+Y GGY+G L +VE +DP
Sbjct: 230 LNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289
Query: 536 WNKVSPMCFKRSAVGAA 552
W++V+ M RS VG A
Sbjct: 290 WSEVTRMTSGRSGVGVA 306
>pdb|2XN4|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
pdb|2XN4|B Chain B, Crystal Structure Of The Kelch Domain Of Human Klhl2
(mayven)
Length = 302
Score = 202 bits (515), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/276 (39%), Positives = 157/276 (56%), Gaps = 3/276 (1%)
Query: 471 KAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFD 530
+A ++ +VE +D RW + R R G+ M ++A GG+NGS R+ TV+ +D
Sbjct: 24 QAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLRVRTVDSYD 83
Query: 531 PVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ 590
PV+ W V+ M +RS +GAA LN LY GG+DG + L++VE Y ++W V M
Sbjct: 84 PVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMN 143
Query: 591 KHRSAGGVIAFDSYVYALGGHDGLS--IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL 648
RS+ GV +YA+GG+D S +VE Y+ T+EWT + M T+R GV L
Sbjct: 144 TRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL 203
Query: 649 NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV 708
NN +Y GG+DG + +SVE+YDP T+ W+ +A MN+ R + A G L+ +GG DG
Sbjct: 204 NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAVNGLLYVVGGDDGS 263
Query: 709 SNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIPI 744
NL +VE Y+P+TD W V+ C G GV I
Sbjct: 264 CNLASVEYYNPTTDKWTVVSS-CMSTGRSYAGVTVI 298
Score = 135 bits (340), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 73/188 (38%), Positives = 106/188 (56%), Gaps = 2/188 (1%)
Query: 557 KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSI 616
KL V G ++ +VECY+ +++W V + R G++ V+A+GG +G
Sbjct: 16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMAGLVFAVGGFNGSLR 75
Query: 617 FDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE 676
+V+ YDP D+WTSV M +R LG A LN +Y GG+DG+ L SVE Y+ ++E
Sbjct: 76 VRTVDSYDPVKDQWTSVANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNE 135
Query: 677 WKMIASMNVMRSRVALVANMGKLWAIGGYDGVSN--LPTVEVYDPSTDSWAFVAPMCAHE 734
W +A MN RS V + G L+A+GGYD S L TVE Y+ +T+ W ++A M
Sbjct: 136 WFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRR 195
Query: 735 GGVGVGVI 742
G GVGV+
Sbjct: 196 SGAGVGVL 203
Score = 53.9 bits (128), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%)
Query: 637 LTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM 696
++ R RL K+ V G ++SVE YD + W +A + R R +V
Sbjct: 2 MSVRTRLRTPMNLPKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYMA 61
Query: 697 GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742
G ++A+GG++G + TV+ YDP D W VA M +G V+
Sbjct: 62 GLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL 107
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 54/140 (38%), Gaps = 49/140 (35%)
Query: 424 IFAVGG----LTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTV 479
++AVGG L + +VEV+DP W+
Sbjct: 207 LYAVGGHDGPLVR-----KSVEVYDPTTNAWR---------------------------- 233
Query: 480 EVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKV 539
Q+A+ M+M R GV + LY GG +GS L++VE ++P W V
Sbjct: 234 ----------QVAD-MNMCRRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVV 282
Query: 540 SP-MCFKRSAVGAAALNDKL 558
S M RS G ++ +L
Sbjct: 283 SSCMSTGRSYAGVTVIDKRL 302
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 191 bits (484), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/281 (34%), Positives = 150/281 (53%), Gaps = 14/281 (4%)
Query: 424 IFAVGGLTKAGDSLSTVEVFDPLVGRW-QMAEEETLSNAV-----------ISTKSCLTK 471
I+ GG + SLS +E ++P G W ++A+ + + + + ++
Sbjct: 27 IYTAGGYFR--QSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPD 84
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP 531
S ++ ++P +W S+ R+R+GV V+ +YA GG +G ++VE ++P
Sbjct: 85 GNTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEP 144
Query: 532 VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591
R W+ V+P +R VG A LN LY GG+DG + LN+ ECY P++++WR + +
Sbjct: 145 ERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNT 204
Query: 592 HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK 651
RS GV + +YA GG+DG +SVERYD +T+ WT V P +R LG+ +
Sbjct: 205 IRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGR 264
Query: 652 IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVAL 692
IYV GGYDG FL SVE YDP TD W + RS V +
Sbjct: 265 IYVLGGYDGHTFLDSVECYDPDTDTWSEVTRXTSGRSGVGV 305
Score = 177 bits (450), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 143/271 (52%), Gaps = 4/271 (1%)
Query: 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN----GSERLSTVEEFD 530
SLS +E ++P G W + + RS + V+ LYA GG N G+ S ++ ++
Sbjct: 37 SLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDGNTDSSALDCYN 96
Query: 531 PVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ 590
P W+ +P R+ +G ++ +Y GG G N+VE YEP++D+W +V
Sbjct: 97 PXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPXL 156
Query: 591 KHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN 650
R GV + +YA+GG DG + +S E Y P+ +EW + T R GV L+N
Sbjct: 157 TRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHN 216
Query: 651 KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSN 710
IY GGYDG L SVE YD T+ W +A RS + + + G+++ +GGYDG +
Sbjct: 217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTF 276
Query: 711 LPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
L +VE YDP TD+W+ V + GVGV V
Sbjct: 277 LDSVECYDPDTDTWSEVTRXTSGRSGVGVAV 307
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 85/235 (36%), Positives = 124/235 (52%), Gaps = 5/235 (2%)
Query: 511 LYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGY----DG 566
+Y GGY + LS +E ++P W +++ + RS + + LY GG DG
Sbjct: 27 IYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 567 VSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPK 626
+ + ++CY P +QW R+ GV D ++YA+GG G +SVERY+P+
Sbjct: 86 NTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE 145
Query: 627 TDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM 686
DEW V P LT+R +GVA LN +Y GG+DG L S E Y P +EW+ I + N +
Sbjct: 146 RDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTI 205
Query: 687 RSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
RS + ++A GGYDG L +VE YD T++W FVAP +G+ V
Sbjct: 206 RSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPXKHRRSALGITV 260
Score = 108 bits (271), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 96/187 (51%), Gaps = 9/187 (4%)
Query: 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE---ETLSNAVISTKSCLTKAG--- 473
+ GHI+AVGG + ++VE ++P W + + V L G
Sbjct: 120 IDGHIYAVGG-SHGCIHHNSVERYEPERDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFD 178
Query: 474 --DSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP 531
+ L++ E + P W+ A + +RS GV V+ N +YA GGY+G ++L++VE +D
Sbjct: 179 GTNRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQLNSVERYDV 238
Query: 532 VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591
W V+P +RSA+G ++YV GGYDG + L++VECY+PD D W V
Sbjct: 239 ETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSEVTRXTS 298
Query: 592 HRSAGGV 598
RS GV
Sbjct: 299 GRSGVGV 305
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 91/192 (47%), Gaps = 5/192 (2%)
Query: 558 LYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGH----DG 613
+Y GGY SL+ +E Y P W + +Q RS +YA+GG DG
Sbjct: 27 IYTAGGYF-RQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVVGGLLYAVGGRNNSPDG 85
Query: 614 LSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPI 673
+ +++ Y+P T++W+ P R R+GV ++ IY GG G I SVE Y+P
Sbjct: 86 NTDSSALDCYNPXTNQWSPCAPXSVPRNRIGVGVIDGHIYAVGGSHGCIHHNSVERYEPE 145
Query: 674 TDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAH 733
DEW ++A R V + L+A+GG+DG + L + E Y P + W +
Sbjct: 146 RDEWHLVAPXLTRRIGVGVAVLNRLLYAVGGFDGTNRLNSAECYYPERNEWRXITAXNTI 205
Query: 734 EGGVGVGVIPIC 745
G GV V+ C
Sbjct: 206 RSGAGVCVLHNC 217
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 65/137 (47%), Gaps = 9/137 (6%)
Query: 424 IFAVGGLTKAGDSLSTVEVFDPLVGRWQ--MAEEETLSNA-VISTKSCLTKAG-----DS 475
++AVGG + L++ E + P W+ A S A V +C+ AG D
Sbjct: 171 LYAVGGFDGT-NRLNSAECYYPERNEWRXITAXNTIRSGAGVCVLHNCIYAAGGYDGQDQ 229
Query: 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV 535
L++VE +D W RS +G+ V + R+Y GGY+G L +VE +DP
Sbjct: 230 LNSVERYDVETETWTFVAPXKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 289
Query: 536 WNKVSPMCFKRSAVGAA 552
W++V+ RS VG A
Sbjct: 290 WSEVTRXTSGRSGVGVA 306
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 107 bits (268), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 114/234 (48%), Gaps = 10/234 (4%)
Query: 482 FDPLVGR-WQMAEAMSMLRSRVGVAVMKNRLYAFGGY-----NGSERL-STVEEFDPVRR 534
+DP+ + A A + R+ + +N++Y GG N + L S + D V
Sbjct: 29 YDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSS 88
Query: 535 VWNKVSPMCFKRSAVGAAALNDKLYVCGGYD--GVSSLNTVECYEPDKDQWRIVKSMQKH 592
W + P+ R G ++DK+YV G D +SL++V CY+P +W VK++
Sbjct: 89 EWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK 148
Query: 593 RSAGGVIAFDSYVYALGGH-DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK 651
VI+ + +Y LGG D + V Y+PK +W + PM T R GVA K
Sbjct: 149 VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGK 208
Query: 652 IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGY 705
I + GG SVE +D T++W+++ RS ++LV+ G L+AIGG+
Sbjct: 209 IVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGF 262
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 82/191 (42%), Gaps = 23/191 (12%)
Query: 416 RCNYVMGH----IFAVGGLT-KAGDSLSTVEVFDPLVGRWQMAEE---ETLSNAVISTKS 467
RC + +G I+ V G + SL +V +DP+ +W + + + VIS
Sbjct: 100 RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNG 159
Query: 468 ---CLT-KAGDSLSTVEVF--DPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE 521
CL K D T VF +P G W+ M RS GVA+ K ++ GG
Sbjct: 160 MIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDG 219
Query: 522 RLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGV---------SSLNT 572
++VE FD W ++ +RS++ +L LY GG+ + + +N
Sbjct: 220 LSASVEAFDLKTNKWEVMTEFPQERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVND 279
Query: 573 VECYEPDKDQW 583
+ YE DK +W
Sbjct: 280 IWKYEDDKKEW 290
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/161 (25%), Positives = 74/161 (45%), Gaps = 9/161 (5%)
Query: 590 QKHRSAGGVIAFDSYVYALGGH--DGLSIFDSVERY----DPKTDEWTSVKPMLTKRCRL 643
Q R+ ++ + VY +GG D + ++ Y D + EW + P+ + RC
Sbjct: 44 QIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF 103
Query: 644 GVAALNNKIYVCGGYD--GAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWA 701
G+ +++KIYV G D L SV YDP+ +W + ++ + ++++ G ++
Sbjct: 104 GLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYC 163
Query: 702 IGG-YDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGV 741
+GG D V +Y+P W +APM GV +
Sbjct: 164 LGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI 204
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 67/148 (45%), Gaps = 7/148 (4%)
Query: 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHD--GLSIFDSVERYDPKTDEWTSVKPMLTK 639
+W + + R G+ D +Y + G D + DSV YDP +W+ VK + K
Sbjct: 89 EWVGLPPLPSARCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIK 148
Query: 640 RCRLGVAALNNKIYVCGG-YDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGK 698
V + N IY GG D V +Y+P +WK +A M RS + + GK
Sbjct: 149 VYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIHKGK 208
Query: 699 LWAIGGY--DGVSNLPTVEVYDPSTDSW 724
+ GG DG+S +VE +D T+ W
Sbjct: 209 IVIAGGVTEDGLS--ASVEAFDLKTNKW 234
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 74/262 (28%), Positives = 116/262 (44%), Gaps = 14/262 (5%)
Query: 472 AGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP 531
G + F+P W R N +Y GG +L ++ D
Sbjct: 19 GGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGG----SQLFPIKRMDC 74
Query: 532 ---VRRVW-NKVSPMCFKRSAVGAAALNDKLYVCGGYD-GVSSLNTVECYEPDKDQWRIV 586
V+ W +K+ P R ++ A A K+Y GG + G S+L ECY+ + W
Sbjct: 75 YNVVKDSWYSKLGPP-TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTK 133
Query: 587 KSMQKHRSAGGVIAFDSYVYALGGHDGLSI----FDSVERYDPKTDEWTSVKPMLTKRCR 642
SM R + G++ + +Y GG G ++ +S E YDP T+ WT + PM+ R
Sbjct: 134 PSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKN 193
Query: 643 LGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAI 702
G+ + +KI+ GG +G L +VE YD +EWKM++ M V A ++ +
Sbjct: 194 HGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVL 253
Query: 703 GGYDGVSNLPTVEVYDPSTDSW 724
G+ GV L + Y+ TD W
Sbjct: 254 AGFQGVGRLGHILEYNTETDKW 275
Score = 103 bits (256), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/226 (30%), Positives = 101/226 (44%), Gaps = 10/226 (4%)
Query: 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSS 569
R+ FGG + + F+P W + KR ++ +Y+ GG +
Sbjct: 14 RIALFGG----SQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFWDNVVYILGGSQ-LFP 68
Query: 570 LNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHD-GLSIFDSVERYDPKTD 628
+ ++CY KD W R + A + +Y GG + G S E YD +T+
Sbjct: 69 IKRMDCYNVVKDSWYSKLGPPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTE 128
Query: 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDG----AIFLQSVEMYDPITDEWKMIASMN 684
W + MLT+RC G+ N IYVCGG G L S E+YDP T+ W + M
Sbjct: 129 SWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMI 188
Query: 685 VMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730
R LV K++A+GG +G+ L VE YD + W V+PM
Sbjct: 189 EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM 234
Score = 73.9 bits (180), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 71/162 (43%), Gaps = 4/162 (2%)
Query: 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSER----LSTVEEFD 530
+L E +D W +M R G+ +Y GG G+ L++ E +D
Sbjct: 116 ALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYD 175
Query: 531 PVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ 590
P W ++ PM R G + DK++ GG +G+ L+ VE Y+ ++W++V M
Sbjct: 176 PATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMP 235
Query: 591 KHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632
A S VY L G G+ + Y+ +TD+W +
Sbjct: 236 WKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKWVA 277
Score = 73.2 bits (178), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 73/174 (41%), Gaps = 12/174 (6%)
Query: 422 GHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEE---ETLSNAVISTKSCLTKAGDSL-- 476
G I+ GG +L E +D W + S+ ++ + G SL
Sbjct: 102 GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGN 161
Query: 477 -------STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEF 529
++ EV+DP W M R G+ +K++++A GG NG L VE +
Sbjct: 162 NVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYY 221
Query: 530 DPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQW 583
D W VSPM +K V AA+ +YV G+ GV L + Y + D+W
Sbjct: 222 DIKLNEWKMVSPMPWKGVTVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETDKW 275
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
pdb|3I3N|B Chain B, Crystal Structure Of The Btb-Back Domains Of Human Klhl11
Length = 279
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 90/179 (50%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
+EA+I + Y+GR+ + + +V ++ +A + ++ + C +FLKK+ H +N + I A
Sbjct: 92 TVEAVIEYXYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLA 151
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
QL+ A +++ FH+V +EF L + + D + E+ + SEE +FE V++
Sbjct: 152 HXYTLSQLALKAADXIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLK 211
Query: 342 WVKHNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WV+ NA E YL V E L+ ++ C LV +A + H +
Sbjct: 212 WVQRNAEERERYFEELFKLLRLSQXKPTYLTRHVKPERLVANNEVCVKLVADAVERHAL 270
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a
Resolution
pdb|4APF|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a
Resolution
Length = 297
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 49/179 (27%), Positives = 89/179 (49%)
Query: 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFA 281
+EA+I + Y+GR+ + + +V ++ +A + ++ + C +FLKK+ H +N + I A
Sbjct: 110 TVEAVIEYMYTGRIRVSTGSVHEVLELADRFLLIRLKEFCGEFLKKKLHLSNCVAIHSLA 169
Query: 282 DTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMR 341
QL+ A +++ FH+V +EF L + + D + E+ + SEE +FE V++
Sbjct: 170 HMYTLSQLALKAADMIRRNFHKVIQDEEFYTLPFHLIRDWLSDLEITVDSEEVLFETVLK 229
Query: 342 WVKHNASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRSSHECRDLVDEARDFHLM 400
WV+ NA E YL V E L+ ++ C LV +A + H +
Sbjct: 230 WVQRNAEERERYFEELFKLLRLSQMKPTYLTRHVKPERLVANNEVCVKLVADAVERHAL 288
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 100/235 (42%), Gaps = 11/235 (4%)
Query: 482 FDPLVGRWQMAEAMSML-RSRVGVAVMKNRLYAFGG--YNGSERLSTVE----EFDPVRR 534
+DP A S + ++ V + +N+++ GG YN + + +FD +
Sbjct: 18 YDPAANECYXASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDS 77
Query: 535 VWNKVSPMCFKRSAVGAAALNDKLYVCGG---YDGVSSLNTVECYEPDKDQWRIVKSMQK 591
W + P+ R G + +YV GG DG L++V CY+ +W +
Sbjct: 78 EWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY 137
Query: 592 HRSAGGVIAFDSYVYALGGHDG-LSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN 650
V++ VY +GG + + YDPK EW + PM T R G +
Sbjct: 138 VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDG 197
Query: 651 KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGY 705
+I V G S E+Y ++W + RS ++LV+ +G L+AIGG+
Sbjct: 198 RIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGF 252
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 4/113 (3%)
Query: 622 RYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGG---YDGAIFLQSVEMYDPITDEWK 678
++D EW + P+ + RC G+ N IYV GG DG L SV YD ++ +W
Sbjct: 71 QFDHLDSEWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWG 130
Query: 679 MIASMNVMRSRVALVANMGKLWAIGGYDGVSN-LPTVEVYDPSTDSWAFVAPM 730
+ + ++++M ++ IGG L + VYDP W +APM
Sbjct: 131 ESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPM 183
Score = 45.8 bits (107), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 60/148 (40%), Gaps = 4/148 (2%)
Query: 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGH---DGLSIFDSVERYDPKTDEWTSVKPMLT 638
+W + + R G+ + +Y +GG DG DSV YD + +W P+
Sbjct: 78 EWLGMPPLPSPRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY 137
Query: 639 KRCRLGVAALNNKIYVCGGYDG-AIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMG 697
V + + +YV GG L + +YDP EWK +A M RS + G
Sbjct: 138 VVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDG 197
Query: 698 KLWAIGGYDGVSNLPTVEVYDPSTDSWA 725
++ G + EVY + + WA
Sbjct: 198 RIIVAAGVTDTGLTSSAEVYSITDNKWA 225
Score = 39.7 bits (91), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 76/197 (38%), Gaps = 28/197 (14%)
Query: 416 RCNYVMGH----IFAVGGL-TKAGDS-LSTVEVFDPLVGRWQMAEEETL-----SNAVIS 464
RC + +G I+ VGG K G+ L +V +D L +W E + L + V+S
Sbjct: 89 RCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKW--GESDPLPYVVYGHTVLS 146
Query: 465 TKSCLTKAGDS------LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN 518
+ G L+ + V+DP W+ M RS G V R+ G
Sbjct: 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVHDGRIIVAAGVT 206
Query: 519 GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGV---------SS 569
+ S+ E + W +RS++ +L LY GG+ + +
Sbjct: 207 DTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVSLVGTLYAIGGFATLETESGELVPTE 266
Query: 570 LNTVECYEPDKDQWRIV 586
LN + Y ++ +W V
Sbjct: 267 LNDIWRYNEEEKKWEGV 283
>pdb|3HVE|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 84/166 (50%), Gaps = 1/166 (0%)
Query: 226 LINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLN 285
++++ +SG++ ++ +Q ++ A L + + C +FL+ N +GIR FA
Sbjct: 88 ILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYC 147
Query: 286 CLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKH 345
+ A +Y++ +F +VS ++EF+ L ++ +++ +L++ +E VFEAV+RW+ H
Sbjct: 148 LHHVHYLATEYLETHFRDVSSTEEFLELSPQKLKEVISLEKLNVGNERYVFEAVIRWIAH 207
Query: 346 NASEXXXXXXXXXXXXXXXXXXXHYLADRVATEALIRS-SHECRDL 390
+ YL ++ E L+R EC ++
Sbjct: 208 DTEIRKVHXKDVXSALWVSGLDSSYLREQXLNEPLVREIVKECSNI 253
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/80 (20%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 126 VLAATIPYFQAM--FTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLM 183
+LAA PY + + + +I ++GI ++++++SG++ ++ +Q ++
Sbjct: 49 ILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXVXREILDYIFSGQIRLNEDTIQDVV 108
Query: 184 VVASFLQMQKVADACADFLK 203
A L + + C +FL+
Sbjct: 109 QAADLLLLTDLKTLCCEFLE 128
>pdb|2NN2|A Chain A, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
pdb|2NN2|B Chain B, Crystal Structure Of The Btb Domain From The LrfZBTB7
Transcriptional Regulator
Length = 133
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 61/142 (42%), Gaps = 34/142 (23%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ E R QG LCDV I V+ + F HR VLAA Y
Sbjct: 26 LNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQY------------------------- 60
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
F+ +FTS +Q + + A A+ AL++F Y+ +T+ + NV ++
Sbjct: 61 ---------FKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILS 111
Query: 185 VASFLQMQKVADACADFLKKRF 206
A L++ V+ CAD L ++
Sbjct: 112 AARLLEIPAVSHVCADLLDRQI 133
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 5/87 (5%)
Query: 188 FLQMQKVADACADFLKKRFHPNNVLD----YYVLF-SCRAMEALINFAYSGRVTIHSQNV 242
F + V AC+ + KK F V+D Y + F S A+ AL++FAY+ +T+ + NV
Sbjct: 47 FPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANV 106
Query: 243 QSLMVVASFLQMQKVADACADFLKKRF 269
++ A L++ V+ CAD L ++
Sbjct: 107 GDILSAARLLEIPAVSHVCADLLDRQI 133
>pdb|2IF5|A Chain A, Structure Of The Poz Domain Of Human Lrf, A Master
Regulator Of Oncogenesis
Length = 120
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 59/138 (42%), Gaps = 34/138 (24%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ E R QG LCDV I V+ + F HR VLAA Y
Sbjct: 16 LNEQRTQGLLCDVVILVEGREFPTHRSVLAACSQY------------------------- 50
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
F+ +FTS +Q + + A A+ AL++F Y+ +T+ + NV ++
Sbjct: 51 ---------FKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANVGDILS 101
Query: 185 VASFLQMQKVADACADFL 202
A L++ V+ CAD L
Sbjct: 102 AARLLEIPAVSHVCADLL 119
Score = 49.3 bits (116), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 5/83 (6%)
Query: 188 FLQMQKVADACADFLKKRFHPNNVLD----YYVLF-SCRAMEALINFAYSGRVTIHSQNV 242
F + V AC+ + KK F V+D Y + F S A+ AL++FAY+ +T+ + NV
Sbjct: 37 FPTHRSVLAACSQYFKKLFTSGAVVDQQNVYEIDFVSAEALTALMDFAYTATLTVSTANV 96
Query: 243 QSLMVVASFLQMQKVADACADFL 265
++ A L++ V+ CAD L
Sbjct: 97 GDILSAARLLEIPAVSHVCADLL 119
>pdb|2Z8H|A Chain A, Structure Of Mouse Bach1 Btb Domain
Length = 138
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 60/138 (43%), Gaps = 35/138 (25%)
Query: 69 RRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLA 128
R++ LCDVT+ V+ Q F HR VLAA YF S + E+T+
Sbjct: 31 RKKDVLCDVTVLVEGQRFRAHRSVLAACSSYFH----SRIVGQTDAELTV---------- 76
Query: 129 ATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASF 188
T+P E+T++G E LI F Y+ ++ + NV + F
Sbjct: 77 -TLP---------------EEVTVKG-----FEPLIQFAYTAKLILSKDNVDEVCRCVEF 115
Query: 189 LQMQKVADACADFLKKRF 206
L + + ++C FLK +F
Sbjct: 116 LSVHNIEESCFQFLKFKF 133
Score = 37.7 bits (86), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRF 269
+ E LI FAY+ ++ + NV + FL + + ++C FLK +F
Sbjct: 85 KGFEPLIQFAYTAKLILSKDNVDEVCRCVEFLSVHNIEESCFQFLKFKF 133
>pdb|2IHC|A Chain A, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|B Chain B, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|C Chain C, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
pdb|2IHC|D Chain D, Crystal Structure Of The Bric-A-Brac (Btb) Domain Of Human
Bach1
Length = 124
Score = 53.1 bits (126), Expect = 6e-07, Method: Composition-based stats.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 35/139 (25%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ + R++ LCDVTI V+ Q F HR VLAA YF + A+ +
Sbjct: 20 LNDQRKKDVLCDVTIFVEGQRFRAHRSVLAACSSYFHSRIVGQ-ADGE------------ 66
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
L T+P E+T++G E LI F Y+ ++ + +NV +
Sbjct: 67 --LNITLP---------------EEVTVKG-----FEPLIQFAYTAKLILSKENVDEVCK 104
Query: 185 VASFLQMQKVADACADFLK 203
FL + + ++C FLK
Sbjct: 105 CVEFLSVHNIEESCFQFLK 123
Score = 36.6 bits (83), Expect = 0.048, Method: Composition-based stats.
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 219 SCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
+ + E LI FAY+ ++ + +NV + FL + + ++C FLK
Sbjct: 76 TVKGFEPLIQFAYTAKLILSKENVDEVCKCVEFLSVHNIEESCFQFLK 123
>pdb|3GA1|A Chain A, Crystal Structure Of The Human Nac1 Poz Domain
pdb|3GA1|B Chain B, Crystal Structure Of The Human Nac1 Poz Domain
Length = 129
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 62/140 (44%), Gaps = 37/140 (26%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ E R QG CDV++ V +F HR VLAA+ YF+ +F + + AV
Sbjct: 24 LNEQRLQGLYCDVSVVVKGHAFKAHRAVLAASSSYFRDLFNNSRS-------------AV 70
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
+ L A + + + +++F Y+GR++++ + LM
Sbjct: 71 VELPA------------------------AVQPQSFQQILSFCYTGRLSMNVGDQDLLMY 106
Query: 185 VASFLQMQKVADACADFLKK 204
A FLQ+Q++ + +F K
Sbjct: 107 TAGFLQIQEIMEKGTEFFLK 126
Score = 33.9 bits (76), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 30/47 (63%)
Query: 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK 267
++ + +++F Y+GR++++ + LM A FLQ+Q++ + +F K
Sbjct: 80 QSFQQILSFCYTGRLSMNVGDQDLLMYTAGFLQIQEIMEKGTEFFLK 126
>pdb|3OHU|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHU|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form I
pdb|3OHV|A Chain A, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|B Chain B, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|C Chain C, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|D Chain D, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|E Chain E, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
pdb|3OHV|F Chain F, Crystal Structure Of The Human Bach2 Poz Domain, Form Ii
Length = 125
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 62/135 (45%), Gaps = 37/135 (27%)
Query: 69 RRQGKLCDVTIKVDDQSFTCHRIVLAATIPYF-QAMFTSDMAESKQREITMQGIDAVIVL 127
R++ LCDVT+ V+ + F HR VLAA YF QA+ + ++K
Sbjct: 27 RKKDILCDVTLIVERKEFRAHRAVLAACSEYFWQAL----VGQTK--------------- 67
Query: 128 AATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVAS 187
+D+ S E+T +G L+ F Y+ ++ + +N++ ++ A
Sbjct: 68 ------------NDLVVSLPEEVTARGFG-----PLLQFAYTAKLLLSRENIREVIRCAE 110
Query: 188 FLQMQKVADACADFL 202
FL+M + D+C FL
Sbjct: 111 FLRMHNLEDSCFSFL 125
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 28/47 (59%)
Query: 219 SCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFL 265
+ R L+ FAY+ ++ + +N++ ++ A FL+M + D+C FL
Sbjct: 79 TARGFGPLLQFAYTAKLLLSRENIREVIRCAEFLRMHNLEDSCFSFL 125
>pdb|1R28|A Chain A, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R28|B Chain B, Crystal Structure Of The B-Cell Lymphoma 6 (Bcl6) Btb
Domain To 2.2 Angstrom
pdb|1R29|A Chain A, Crystal Structure Of The B-cell Lymphoma 6 (bcl6) Btb
Domain To 1.3 Angstrom
pdb|1R2B|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|1R2B|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With A
Smrt Co-Repressor Peptide
pdb|3BIM|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|C Chain C, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|D Chain D, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|E Chain E, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|F Chain F, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|G Chain G, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3BIM|H Chain H, Crystal Structure Of The Bcl6 Btb Domain Dimer In Complex
With The Bcor Bbd Corepressor Peptide
pdb|3LBZ|A Chain A, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
pdb|3LBZ|B Chain B, Crystal Structure Of The Bcl6 Btb Domain Complexed With
The Molecule Inhibitor 79-6
Length = 127
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 34/139 (24%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ +R + L DV I V + F H+ VL A F ++FT + +R +++ +D
Sbjct: 20 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQL----KRNLSVINLDP- 74
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
EI +G + L++F+Y+ R+ + N+ ++M
Sbjct: 75 ------------------------EINPEGFNI-----LLDFMYTSRLNLREGNIMAVMA 105
Query: 185 VASFLQMQKVADACADFLK 203
A +LQM+ V D C F+K
Sbjct: 106 TAMYLQMEHVVDTCRKFIK 124
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 226 LINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
L++F Y+ R+ + N+ ++M A +LQM+ V D C F+K
Sbjct: 84 LLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 124
>pdb|2Q81|A Chain A, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|B Chain B, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|C Chain C, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
pdb|2Q81|D Chain D, Crystal Structure Of The Miz-1 BtbPOZ DOMAIN
Length = 119
Score = 48.9 bits (115), Expect = 1e-05, Method: Composition-based stats.
Identities = 35/139 (25%), Positives = 60/139 (43%), Gaps = 44/139 (31%)
Query: 64 VMEEIRRQ---GKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQG 120
V+E++ +Q G LCD T VD F H+ VLAA Y
Sbjct: 14 VLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEY--------------------- 52
Query: 121 IDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI-DAVAMEALINFVYSGRVTIHSQNV 179
F+ +F Q+++ I +A + ++ F+Y+ ++++ +NV
Sbjct: 53 -------------FKMLFVD------QKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENV 93
Query: 180 QSLMVVASFLQMQKVADAC 198
++ VA+FLQMQ + AC
Sbjct: 94 DDVLAVATFLQMQDIITAC 112
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 40/74 (54%)
Query: 188 FLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMV 247
F + V AC+++ K F + + + + + ++ F Y+ ++++ +NV ++
Sbjct: 39 FKAHKAVLAACSEYFKMLFVDQKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLA 98
Query: 248 VASFLQMQKVADAC 261
VA+FLQMQ + AC
Sbjct: 99 VATFLQMQDIITAC 112
>pdb|3M52|A Chain A, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
pdb|3M52|B Chain B, Crystal Structure Of The Btb Domain From The Miz-1ZBTB17
Transcription Regulator
Length = 117
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 49/149 (32%)
Query: 59 SQGFP-----VMEEIRRQ---GKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAE 110
S FP V+E++ +Q G LCD T VD F H+ VLAA Y
Sbjct: 2 SMDFPQHSQHVLEQLNQQRQLGLLCDCTFVVDGVHFKAHKAVLAACSEY----------- 50
Query: 111 SKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI-DAVAMEALINFVYS 169
F+ +F Q+++ I +A + ++ F+Y+
Sbjct: 51 -----------------------FKMLFVD------QKDVVHLDISNAAGLGQVLEFMYT 81
Query: 170 GRVTIHSQNVQSLMVVASFLQMQKVADAC 198
++++ +NV ++ VA+FLQMQ + AC
Sbjct: 82 AKLSLSPENVDDVLAVATFLQMQDIITAC 110
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%)
Query: 192 QKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASF 251
+ V AC+++ K F + + + + + ++ F Y+ ++++ +NV ++ VA+F
Sbjct: 41 KAVLAACSEYFKMLFVDQKDVVHLDISNAAGLGQVLEFMYTAKLSLSPENVDDVLAVATF 100
Query: 252 LQMQKVADAC 261
LQMQ + AC
Sbjct: 101 LQMQDIITAC 110
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
pdb|4EOZ|C Chain C, Crystal Structure Of The Spop Btb Domain Complexed With
The Cul3 N- Terminal Domain
Length = 145
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 126 VLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVV 185
+LAA P F AMF +M ESK+ + + ++ + ++ F+Y+G+ + L+
Sbjct: 43 ILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAA 102
Query: 186 ASFLQMQKVADACADFLKKRFHPNNVLDYYVL 217
A ++++ C D L N + +L
Sbjct: 103 ADKYALERLKVMCEDALCSNLSVENAAEILIL 134
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HQI|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
pdb|3HU6|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
SpopmathxBTB3-Box-Pucsbc1
Length = 312
Score = 45.4 bits (106), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 43/92 (46%)
Query: 126 VLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVV 185
+LAA P F AMF +M ESK+ + + ++ + ++ F+Y+G+ + L+
Sbjct: 192 ILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAA 251
Query: 186 ASFLQMQKVADACADFLKKRFHPNNVLDYYVL 217
A ++++ C D L N + +L
Sbjct: 252 ADKYALERLKVMCEDALCSNLSVENAAEILIL 283
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 18/150 (12%)
Query: 71 QGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVI----- 125
+ D + V Q F H+ +LAA P F AMF +M ESK+ + + ++ +
Sbjct: 171 NSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMM 230
Query: 126 --VLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLM 183
+ P M +A + + ++ + + +AL + + +N ++
Sbjct: 231 CFIYTGKAPNLDKMADDLLAAADK--YALERLKVMCEDALCS-------NLSVENAAEIL 281
Query: 184 VVASFLQMQKVADACADFLKKRFHPNNVLD 213
++A ++ DF+ +H +VL+
Sbjct: 282 ILADLHSADQLKTQAVDFI--NYHATDVLE 309
>pdb|3E4U|A Chain A, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|B Chain B, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|C Chain C, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|D Chain D, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|E Chain E, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
pdb|3E4U|F Chain F, Crystal Structure Of The Wild-Type Human Bcl6 BtbPOZ
DOMAIN
Length = 130
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 59/139 (42%), Gaps = 34/139 (24%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAV 124
+ +R + L DV I V + F H+ VL A F ++FT + + +++ +D
Sbjct: 23 LNRLRSRDILTDVVIVVSREQFRAHKTVLMACSGLFYSIFTDQL----KCNLSVINLDP- 77
Query: 125 IVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMV 184
EI +G L++F+Y+ R+ + N+ ++M
Sbjct: 78 ------------------------EINPEG-----FCILLDFMYTSRLNLREGNIMAVMA 108
Query: 185 VASFLQMQKVADACADFLK 203
A +LQM+ V D C F+K
Sbjct: 109 TAMYLQMEHVVDTCRKFIK 127
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 226 LINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLK 266
L++F Y+ R+ + N+ ++M A +LQM+ V D C F+K
Sbjct: 87 LLDFMYTSRLNLREGNIMAVMATAMYLQMEHVVDTCRKFIK 127
>pdb|1CS3|A Chain A, Structure Of BtbPOZ TRANSCRIPTION REPRESSION DOMAIN FROM
PROMELOCYTIC Leukemia Zinc Finger Oncoprotein
Length = 116
Score = 42.7 bits (99), Expect = 8e-04, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 67 EIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMF 104
++R G LCDV I VD Q F HR VLA T F+ +F
Sbjct: 20 QMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF 57
>pdb|1BUO|A Chain A, Btb Domain From Plzf
Length = 121
Score = 42.4 bits (98), Expect = 9e-04, Method: Composition-based stats.
Identities = 19/38 (50%), Positives = 23/38 (60%)
Query: 67 EIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMF 104
++R G LCDV I VD Q F HR VLA T F+ +F
Sbjct: 21 QMRLAGTLCDVVIMVDSQEFHAHRTVLACTSKMFEILF 58
>pdb|2VPK|A Chain A, Crystal Structure Of The Btb Domain Of Human Myoneurin
Length = 116
Score = 42.4 bits (98), Expect = 0.001, Method: Composition-based stats.
Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 36/130 (27%)
Query: 69 RRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLA 128
R G LCD TI + + F HR VLA+ YF A++ S + + + +
Sbjct: 17 REAGFLCDCTIVIGEFQFKAHRNVLASFSEYFGAIYRS----TSENNVFLD--------- 63
Query: 129 ATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASF 188
Q ++ G + L+ F+Y+G + + S NV+ + A +
Sbjct: 64 ------------------QSQVKADG-----FQKLLEFIYTGTLNLDSWNVKEIHQAADY 100
Query: 189 LQMQKVADAC 198
L++++V C
Sbjct: 101 LKVEEVVTKC 110
Score = 30.0 bits (66), Expect = 5.5, Method: Composition-based stats.
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 209 NNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADAC 261
NNV + L+ F Y+G + + S NV+ + A +L++++V C
Sbjct: 58 NNVFLDQSQVKADGFQKLLEFIYTGTLNLDSWNVKEIHQAADYLKVEEVVTKC 110
>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
II
pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33, FORM
I
Length = 124
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFT 105
+ E R G CDVT+ V+D+ F H+ +L+A+ YF +F+
Sbjct: 24 LNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFS 64
>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
Containing 33
Length = 116
Score = 40.8 bits (94), Expect = 0.003, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 65 MEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFT 105
+ E R G CDVT+ V+D+ F H+ +L+A+ YF +F+
Sbjct: 22 LNEQRGHGLFCDVTVIVEDRKFRAHKNILSASSTYFHQLFS 62
>pdb|2EIB|A Chain A, Crystal Structure Of Galactose Oxidase, W290h Mutant
Length = 639
Score = 39.3 bits (90), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 77/202 (38%), Gaps = 33/202 (16%)
Query: 484 PLVGRWQMAEAMSMLRSRVGVAVMKNRLY--------AFGGYNGSERLSTVEEFDPVRRV 535
P +GRW + ++ + + R+ AFGG G L++ +DP +
Sbjct: 156 PGLGRWGPTIDLPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTS--SWDPSTGI 213
Query: 536 WN-------KVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS 588
+ K C S G N ++ V GG D Y+ D W
Sbjct: 214 VSDRTVTVTKHDMFCPGISMDG----NGQIVVTGGND----AKKTSLYDSSSDSWIPGPD 265
Query: 589 MQKHRS-AGGVIAFDSYVYALGGHDGLSIFD-SVERYDPKTDEWTS-----VKPMLTKRC 641
MQ R D V+ +GG +F+ + E Y P + WTS V PMLT
Sbjct: 266 MQVARGYQSSATMSDGRVFTIGGSHSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD- 324
Query: 642 RLGVAALNNKIYVCGGYDGAIF 663
+ G+ +N ++ G G++F
Sbjct: 325 KQGLYRSDNHAWLFGWKKGSVF 346
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 38.5 bits (88), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/257 (24%), Positives = 95/257 (36%), Gaps = 60/257 (23%)
Query: 540 SPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVI 599
+P+ FK S GA ND +Y+ G G ++ ++ DK +W + +
Sbjct: 6 TPVPFK-SGTGAID-NDTVYIGLGSAG-TAWYKLDTQAKDK-KWTALAAFPGGPRDQATS 61
Query: 600 AF-DSYVYALGG----HDGLS-IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAA-----L 648
AF D +Y GG +GL+ +F+ V +Y+PKT+ W L G A
Sbjct: 62 AFIDGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVK----LXSHAPXGXAGHVTFVH 117
Query: 649 NNKIYVCGGYDGAIFLQSVE----------------------------------MYDPIT 674
N K YV GG + IF E +DP T
Sbjct: 118 NGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPST 177
Query: 675 DEWKMIASMNVMRSRVALVANMG-KLWAIGGYDGVSNLPTVEVYD----PSTDSWAFVAP 729
+W + A V N G K W I G + L T V++ + W +AP
Sbjct: 178 QQWSYAGESPWYGTAGAAVVNKGDKTWLING-EAKPGLRTDAVFELDFTGNNLKWNKLAP 236
Query: 730 MCAHEGGVGVGVIPICN 746
+ + + GV G I N
Sbjct: 237 VSSPD-GVAGGFAGISN 252
>pdb|2VKP|A Chain A, Crystal Structure Of Btb Domain From Btbd6
pdb|2VKP|B Chain B, Crystal Structure Of Btb Domain From Btbd6
Length = 109
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 126 VLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVV 185
VLA F A F D+AE K EI + ++ A L+ + YS + + + V + +
Sbjct: 30 VLAVGSSVFYAXFYGDLAEVKS-EIHIPDVEPAAFLILLKYXYSDEIDLEADTVLATLYA 88
Query: 186 ASFLQMQKVADACADFLK 203
A + +A AC +FL+
Sbjct: 89 AKKYIVPALAKACVNFLE 106
>pdb|2PPI|A Chain A, Structure Of The Btb (Tramtrack And Bric A Brac) Domain Of
Human Gigaxonin
Length = 144
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 17/80 (21%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 126 VLAATIPYFQAM--FTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLM 183
+LAA PY + + + +I ++GI + M ++++++SG++ ++ +Q ++
Sbjct: 65 ILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVMVMREILDYIFSGQIRLNEDTIQDVV 124
Query: 184 VVASFLQMQKVADACADFLK 203
A L + + C +FL+
Sbjct: 125 QAADLLLLTDLKTLCCEFLE 144
>pdb|3HVE|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Gigaxoninbtb3-Box
Length = 256
Score = 37.0 bits (84), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 41/79 (51%)
Query: 226 LINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLN 285
++++ +SG++ ++ +Q ++ A L + + C +FL+ N +GIR FA
Sbjct: 88 ILDYIFSGQIRLNEDTIQDVVQAADLLLLTDLKTLCCEFLEGCIAAENCIGIRDFALHYC 147
Query: 286 CLQLSEAADKYVQQYFHEV 304
+ A +Y++ +F +V
Sbjct: 148 LHHVHYLATEYLETHFRDV 166
Score = 35.0 bits (79), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 16/80 (20%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 126 VLAATIPYFQAM--FTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLM 183
+LAA PY + + + +I ++GI ++++++SG++ ++ +Q ++
Sbjct: 49 ILAAASPYIRTKLNYNPPKDDGSTYKIELEGISVXVXREILDYIFSGQIRLNEDTIQDVV 108
Query: 184 VVASFLQMQKVADACADFLK 203
A L + + C +FL+
Sbjct: 109 QAADLLLLTDLKTLCCEFLE 128
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|B Chain B, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|C Chain C, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
pdb|3HTM|D Chain D, Structures Of Spop-Substrate Complexes: Insights Into
Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:
Spopbtb3-Box
Length = 172
Score = 35.0 bits (79), Expect = 0.16, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 73 KLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGID 122
+ D + V Q F H+ +LAA P F A F + ESK+ + + ++
Sbjct: 33 RFTDCCLCVAGQEFQAHKAILAARSPVFSAXFEHEXEESKKNRVEINDVE 82
Score = 33.1 bits (74), Expect = 0.65, Method: Composition-based stats.
Identities = 21/101 (20%), Positives = 42/101 (41%)
Query: 126 VLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVV 185
+LAA P F A F + ESK+ + + ++ + F+Y+G+ + L+
Sbjct: 52 ILAARSPVFSAXFEHEXEESKKNRVEINDVEPEVFKEXXCFIYTGKAPNLDKXADDLLAA 111
Query: 186 ASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEAL 226
A ++++ C D L N + +L + + L
Sbjct: 112 ADKYALERLKVXCEDALCSNLSVENAAEILILADLHSADQL 152
>pdb|3B84|A Chain A, Crystal Structure Of The Human Btb Domain Of The Krueppel
Related Zinc Finger Protein 3 (Hkr3)
Length = 119
Score = 34.3 bits (77), Expect = 0.25, Method: Composition-based stats.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 41/144 (28%)
Query: 64 VMEEIRRQ---GKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQG 120
V++E+ +Q G+ CD T+ V F H VLA +FQ+++ G
Sbjct: 11 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQSLYGD-------------G 57
Query: 121 IDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQ 180
+VL A F +F G+ L++F Y+G + + S N
Sbjct: 58 SGGSVVLPAG---FAEIF---------------GL-------LLDFFYTGHLALTSGNRD 92
Query: 181 SLMVVASFLQMQKVADACADFLKK 204
+++ A L++ + + C F K
Sbjct: 93 QVLLAARELRVPEAVELCQSFKPK 116
>pdb|2YY9|A Chain A, Crystal Structure Of Btb Domain From Mouse Hkr3
pdb|2YY9|B Chain B, Crystal Structure Of Btb Domain From Mouse Hkr3
Length = 135
Score = 33.5 bits (75), Expect = 0.40, Method: Composition-based stats.
Identities = 32/141 (22%), Positives = 56/141 (39%), Gaps = 41/141 (29%)
Query: 64 VMEEIRRQ---GKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQG 120
V++E+ +Q G+ CD T+ V F H VLA +FQ ++ G
Sbjct: 12 VLQELNKQREKGQYCDATLDVGGLVFKAHWSVLACCSHFFQRIYGD-------------G 58
Query: 121 IDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQ 180
+VL A F +F G+ L++F Y+G + + S N
Sbjct: 59 TGGSVVLPAG---FAEIF---------------GL-------LLDFFYTGHLALTSGNRD 93
Query: 181 SLMVVASFLQMQKVADACADF 201
+++ A L++ + + C F
Sbjct: 94 QVLLAAKELRVPEAVELCQSF 114
>pdb|4EQB|A Chain A, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
And Hepes.
pdb|4EQB|B Chain B, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC
Transporter Substrate-Binding Protein From Streptococcus
Pneumoniae Strain Canada Mdr_19a In Complex With Calcium
And Hepes
Length = 330
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 11/102 (10%)
Query: 228 NFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTL--- 284
+ A I+ + L+V + +++ + + +FL + F P N I F TL
Sbjct: 59 DIAIPSEYMINKMKDEDLLVPLDYSKIEGIENIGPEFLNQSFDPGNKFSIPYFWGTLGIV 118
Query: 285 -NCLQLSEAA----DKYVQQYFHEVSMSD---EFIGLGVNEV 318
N + EA D + +Y + + + D E +GLG+N +
Sbjct: 119 YNETMVDEAPEHWDDLWKLEYKNSIMLFDGAREVLGLGLNSL 160
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,103,625
Number of Sequences: 62578
Number of extensions: 756209
Number of successful extensions: 1931
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1698
Number of HSP's gapped (non-prelim): 125
length of query: 748
length of database: 14,973,337
effective HSP length: 106
effective length of query: 642
effective length of database: 8,340,069
effective search space: 5354324298
effective search space used: 5354324298
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)