Query psy10286
Match_columns 748
No_of_seqs 580 out of 3729
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 22:33:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy10286.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/10286hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441|consensus 100.0 1.7E-97 4E-102 819.1 54.6 560 48-745 10-571 (571)
2 PHA02713 hypothetical protein; 100.0 1.1E-87 2.5E-92 746.5 50.4 519 51-731 2-544 (557)
3 PHA03098 kelch-like protein; P 100.0 2.3E-77 5.1E-82 672.8 50.6 512 71-739 6-530 (534)
4 PHA02790 Kelch-like protein; P 100.0 9.4E-74 2E-78 627.3 49.0 465 62-727 10-477 (480)
5 KOG4441|consensus 100.0 4.4E-54 9.6E-59 474.6 25.5 238 506-743 282-522 (571)
6 PHA02713 hypothetical protein; 100.0 4.2E-47 9.1E-52 422.0 32.6 233 510-743 259-512 (557)
7 PHA03098 kelch-like protein; P 100.0 9.6E-42 2.1E-46 383.9 37.9 404 173-689 104-527 (534)
8 PLN02193 nitrile-specifier pro 100.0 2E-39 4.4E-44 355.0 37.2 261 479-740 139-436 (470)
9 PLN02153 epithiospecifier prot 100.0 1.7E-39 3.6E-44 343.6 33.7 261 484-744 4-313 (341)
10 PHA02790 Kelch-like protein; P 100.0 3.1E-39 6.8E-44 354.5 36.4 193 475-680 285-477 (480)
11 PLN02153 epithiospecifier prot 100.0 3.7E-39 8E-44 341.0 34.7 271 412-720 20-339 (341)
12 PLN02193 nitrile-specifier pro 100.0 8.1E-38 1.8E-42 342.4 35.8 271 412-721 163-469 (470)
13 TIGR03547 muta_rot_YjhT mutatr 100.0 3.1E-37 6.7E-42 327.8 32.2 242 477-718 29-344 (346)
14 TIGR03548 mutarot_permut cycli 100.0 2.8E-37 6.1E-42 324.4 30.8 232 476-708 38-315 (323)
15 PRK14131 N-acetylneuraminic ac 100.0 2.4E-36 5.3E-41 322.8 32.8 249 478-726 51-374 (376)
16 TIGR03547 muta_rot_YjhT mutatr 100.0 2.3E-36 5E-41 321.1 30.5 247 492-742 1-320 (346)
17 TIGR03548 mutarot_permut cycli 100.0 1.3E-35 2.8E-40 311.8 29.8 245 498-743 3-303 (323)
18 KOG4693|consensus 100.0 2.4E-35 5.2E-40 273.0 22.4 230 478-707 45-313 (392)
19 PRK14131 N-acetylneuraminic ac 100.0 1.3E-34 2.9E-39 309.4 30.1 252 488-743 18-343 (376)
20 KOG4693|consensus 100.0 7E-34 1.5E-38 263.3 21.9 255 488-742 3-301 (392)
21 KOG0379|consensus 100.0 1.3E-29 2.7E-34 276.5 26.6 251 493-743 55-328 (482)
22 KOG4350|consensus 100.0 9.7E-31 2.1E-35 255.3 12.3 232 53-382 23-254 (620)
23 KOG0379|consensus 100.0 2.5E-27 5.5E-32 258.4 26.7 252 478-729 89-370 (482)
24 KOG4152|consensus 100.0 1E-27 2.3E-32 240.7 20.0 257 409-707 27-343 (830)
25 KOG1230|consensus 99.9 1.5E-26 3.2E-31 227.6 20.2 204 477-680 98-347 (521)
26 KOG1230|consensus 99.9 1.9E-26 4.1E-31 226.9 19.5 235 493-727 61-347 (521)
27 KOG4152|consensus 99.9 3.4E-26 7.5E-31 229.8 18.5 253 488-742 18-331 (830)
28 KOG2075|consensus 99.9 3.2E-21 7E-26 194.5 14.7 230 56-382 96-341 (521)
29 KOG4682|consensus 99.8 1.1E-19 2.5E-24 178.7 15.1 187 64-344 59-246 (488)
30 COG3055 Uncharacterized protei 99.8 5.4E-17 1.2E-21 158.9 21.2 243 474-718 55-372 (381)
31 PF00651 BTB: BTB/POZ domain; 99.8 1.8E-18 4E-23 151.3 9.7 107 65-205 1-110 (111)
32 KOG0783|consensus 99.8 5.4E-18 1.2E-22 180.0 14.8 241 59-321 539-867 (1267)
33 COG3055 Uncharacterized protei 99.7 2.7E-16 5.9E-21 154.1 20.4 245 490-740 28-346 (381)
34 KOG4591|consensus 99.7 6.3E-17 1.4E-21 143.9 8.4 171 56-327 48-223 (280)
35 smart00225 BTB Broad-Complex, 99.6 4E-15 8.7E-20 124.5 6.7 90 76-199 1-90 (90)
36 KOG2437|consensus 99.5 3.6E-15 7.8E-20 150.9 4.8 235 496-730 258-544 (723)
37 PF07707 BACK: BTB And C-termi 99.5 1.1E-14 2.3E-19 125.3 3.5 102 274-375 1-102 (103)
38 KOG2437|consensus 99.4 2.5E-13 5.5E-18 137.7 4.0 177 542-718 257-469 (723)
39 smart00875 BACK BTB And C-term 99.3 1.9E-12 4.1E-17 110.9 7.5 99 274-373 1-99 (101)
40 KOG0783|consensus 99.3 1.1E-11 2.4E-16 132.7 8.6 133 72-269 708-847 (1267)
41 PF13964 Kelch_6: Kelch motif 99.2 3.1E-11 6.8E-16 87.8 6.4 49 498-546 1-50 (50)
42 PF13964 Kelch_6: Kelch motif 99.2 4.9E-11 1.1E-15 86.7 6.4 49 545-593 1-50 (50)
43 PF01344 Kelch_1: Kelch motif; 99.0 8.1E-10 1.8E-14 79.3 4.9 46 498-543 1-47 (47)
44 PF01344 Kelch_1: Kelch motif; 98.9 1.1E-09 2.3E-14 78.6 4.4 46 545-590 1-47 (47)
45 PF13415 Kelch_3: Galactose ox 98.9 2.7E-09 5.9E-14 77.0 5.9 47 696-742 1-49 (49)
46 PF13415 Kelch_3: Galactose ox 98.9 6.4E-09 1.4E-13 75.0 6.1 47 508-554 1-49 (49)
47 KOG2838|consensus 98.8 8.8E-09 1.9E-13 97.0 7.3 110 56-197 112-224 (401)
48 PF07646 Kelch_2: Kelch motif; 98.8 1.8E-08 4E-13 72.7 6.6 46 498-543 1-49 (49)
49 PF07646 Kelch_2: Kelch motif; 98.8 2E-08 4.3E-13 72.5 6.5 46 545-590 1-49 (49)
50 PF07250 Glyoxal_oxid_N: Glyox 98.7 5.2E-07 1.1E-11 88.0 16.7 160 572-744 47-226 (243)
51 PF13418 Kelch_4: Galactose ox 98.7 1.7E-08 3.6E-13 73.0 4.4 47 498-544 1-49 (49)
52 smart00612 Kelch Kelch domain. 98.7 2.3E-08 5E-13 71.7 5.0 47 510-556 1-47 (47)
53 PF13418 Kelch_4: Galactose ox 98.7 1.9E-08 4.2E-13 72.7 4.4 47 639-685 1-49 (49)
54 smart00612 Kelch Kelch domain. 98.7 3.6E-08 7.8E-13 70.7 5.3 47 557-603 1-47 (47)
55 TIGR01640 F_box_assoc_1 F-box 98.5 3.5E-05 7.7E-10 76.7 23.6 194 524-722 14-230 (230)
56 PLN02772 guanylate kinase 98.5 6.7E-07 1.5E-11 92.6 11.2 83 637-721 22-109 (398)
57 PLN02772 guanylate kinase 98.5 8.4E-07 1.8E-11 91.9 11.2 83 591-675 23-110 (398)
58 PF07250 Glyoxal_oxid_N: Glyox 98.5 3.5E-06 7.7E-11 82.3 14.2 148 478-638 47-210 (243)
59 KOG2838|consensus 98.4 1.1E-07 2.3E-12 89.8 3.1 128 61-213 222-395 (401)
60 TIGR01640 F_box_assoc_1 F-box 98.3 0.00011 2.3E-09 73.3 21.8 195 477-675 14-230 (230)
61 PF13854 Kelch_5: Kelch motif 98.3 1.6E-06 3.4E-11 60.0 5.2 40 542-581 1-42 (42)
62 PF13854 Kelch_5: Kelch motif 98.3 1.8E-06 3.8E-11 59.7 5.3 40 683-722 1-42 (42)
63 PRK11138 outer membrane biogen 98.1 0.0068 1.5E-07 65.7 31.9 256 420-723 68-356 (394)
64 KOG4350|consensus 98.1 7.4E-06 1.6E-10 82.1 6.5 143 177-340 116-263 (620)
65 TIGR03300 assembly_YfgL outer 98.0 0.015 3.3E-07 62.7 32.7 256 420-723 64-341 (377)
66 PF03089 RAG2: Recombination a 98.0 0.0011 2.4E-08 64.1 20.2 190 510-701 40-280 (337)
67 KOG0511|consensus 98.0 5E-06 1.1E-10 82.6 4.4 143 84-317 301-446 (516)
68 PRK11138 outer membrane biogen 98.0 0.0054 1.2E-07 66.5 28.4 242 420-703 119-383 (394)
69 PF13360 PQQ_2: PQQ-like domai 97.9 0.019 4.1E-07 57.3 28.7 206 479-723 5-233 (238)
70 PF03089 RAG2: Recombination a 97.9 0.0006 1.3E-08 65.9 16.1 186 558-745 41-283 (337)
71 TIGR03300 assembly_YfgL outer 97.8 0.02 4.4E-07 61.7 29.2 231 439-704 116-369 (377)
72 KOG2716|consensus 97.6 0.00023 5E-09 68.2 7.6 94 77-205 7-104 (230)
73 PF02214 BTB_2: BTB/POZ domain 97.4 0.00014 3.1E-09 60.8 4.0 89 77-198 1-94 (94)
74 PF11822 DUF3342: Domain of un 97.3 0.00024 5.3E-09 71.0 4.5 89 84-205 14-103 (317)
75 PF13360 PQQ_2: PQQ-like domai 97.3 0.24 5.1E-06 49.3 26.3 174 524-726 3-199 (238)
76 PF08450 SGL: SMP-30/Gluconola 97.3 0.1 2.2E-06 52.4 23.4 200 475-702 20-243 (246)
77 PF07893 DUF1668: Protein of u 97.2 0.011 2.3E-07 62.3 16.4 118 601-729 75-216 (342)
78 PF00651 BTB: BTB/POZ domain; 97.2 0.00013 2.8E-09 63.3 1.6 50 219-268 60-110 (111)
79 PF07893 DUF1668: Protein of u 97.2 0.034 7.5E-07 58.5 20.0 123 554-687 75-221 (342)
80 PF07707 BACK: BTB And C-termi 97.2 0.00036 7.8E-09 59.5 3.9 93 180-323 2-103 (103)
81 TIGR03866 PQQ_ABC_repeats PQQ- 96.9 0.63 1.4E-05 47.8 29.0 254 439-723 12-282 (300)
82 PF08450 SGL: SMP-30/Gluconola 96.8 0.33 7.1E-06 48.7 21.8 194 508-731 11-223 (246)
83 KOG0511|consensus 96.7 0.0013 2.8E-08 65.9 3.8 197 65-306 137-423 (516)
84 PRK05137 tolB translocation pr 96.6 1.4 3E-05 48.5 27.4 191 524-728 226-420 (435)
85 PF12768 Rax2: Cortical protei 96.6 0.063 1.4E-06 54.3 14.6 124 616-744 14-147 (281)
86 KOG3473|consensus 96.6 0.0063 1.4E-07 48.5 5.8 82 77-191 19-112 (112)
87 KOG1987|consensus 96.5 0.0035 7.5E-08 65.1 5.7 94 83-210 109-205 (297)
88 PRK04792 tolB translocation pr 96.3 2.4 5.1E-05 46.8 27.2 186 524-726 242-430 (448)
89 KOG4682|consensus 96.2 0.0023 5.1E-08 64.9 2.0 120 87-270 47-171 (488)
90 cd00216 PQQ_DH Dehydrogenases 96.1 3.3 7.2E-05 46.2 29.7 281 420-726 60-432 (488)
91 PRK11028 6-phosphogluconolacto 96.0 2.5 5.3E-05 44.5 31.0 248 468-741 48-327 (330)
92 KOG2055|consensus 96.0 0.36 7.8E-06 50.4 16.3 172 508-704 224-406 (514)
93 PF02191 OLF: Olfactomedin-lik 96.0 0.69 1.5E-05 46.1 18.1 183 508-703 30-237 (250)
94 PRK04792 tolB translocation pr 95.9 2.5 5.5E-05 46.5 24.3 148 571-728 242-390 (448)
95 cd00094 HX Hemopexin-like repe 95.9 0.62 1.3E-05 44.7 17.1 142 550-723 11-178 (194)
96 KOG2714|consensus 95.9 0.015 3.3E-07 59.9 5.9 85 77-196 13-102 (465)
97 TIGR03866 PQQ_ABC_repeats PQQ- 95.8 2.6 5.7E-05 43.1 24.8 175 477-677 11-191 (300)
98 PF05096 Glu_cyclase_2: Glutam 95.8 0.22 4.8E-06 49.2 13.5 157 503-681 49-214 (264)
99 cd00094 HX Hemopexin-like repe 95.8 0.65 1.4E-05 44.6 16.8 142 504-676 12-178 (194)
100 PRK00178 tolB translocation pr 95.8 2.9 6.3E-05 45.9 24.2 147 571-729 223-372 (430)
101 smart00875 BACK BTB And C-term 95.7 0.017 3.6E-07 48.8 5.0 91 181-320 3-99 (101)
102 PRK04922 tolB translocation pr 95.7 4.1 9E-05 44.7 26.6 184 523-723 227-414 (433)
103 PF05096 Glu_cyclase_2: Glutam 95.7 0.13 2.8E-06 50.8 11.6 153 550-725 49-208 (264)
104 KOG2055|consensus 95.5 0.44 9.6E-06 49.8 14.8 148 555-723 224-377 (514)
105 PF12768 Rax2: Cortical protei 95.5 0.2 4.4E-06 50.6 12.3 109 569-682 14-130 (281)
106 cd00200 WD40 WD40 domain, foun 95.5 3.1 6.8E-05 41.5 26.5 204 476-707 72-283 (289)
107 TIGR02800 propeller_TolB tol-p 95.5 3.6 7.7E-05 44.9 23.4 160 555-728 200-362 (417)
108 KOG4591|consensus 95.4 0.038 8.2E-07 50.6 6.0 25 206-230 166-190 (280)
109 KOG0310|consensus 95.3 2.3 5E-05 44.9 19.4 211 477-727 48-273 (487)
110 PRK04922 tolB translocation pr 95.3 4.2 9E-05 44.7 23.3 145 571-728 228-376 (433)
111 cd00200 WD40 WD40 domain, foun 95.3 3.5 7.6E-05 41.1 24.3 184 508-722 62-251 (289)
112 smart00284 OLF Olfactomedin-li 95.2 2.7 5.9E-05 41.6 18.8 183 508-702 34-241 (255)
113 COG1520 FOG: WD40-like repeat 95.0 3.2 7E-05 44.4 21.0 152 505-679 65-225 (370)
114 PRK05137 tolB translocation pr 94.9 7.2 0.00016 42.8 23.9 191 523-727 181-373 (435)
115 cd00216 PQQ_DH Dehydrogenases 94.9 7.9 0.00017 43.2 26.5 118 503-633 56-192 (488)
116 PRK00178 tolB translocation pr 94.9 7.2 0.00016 42.7 28.3 185 524-723 223-409 (430)
117 smart00512 Skp1 Found in Skp1 94.9 0.039 8.5E-07 46.9 4.5 81 77-191 4-104 (104)
118 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.8 9 0.0002 43.1 24.7 202 504-723 65-336 (527)
119 PF02897 Peptidase_S9_N: Proly 94.7 7.8 0.00017 42.2 23.4 239 474-727 147-411 (414)
120 PRK11028 6-phosphogluconolacto 94.7 6.8 0.00015 41.1 26.1 228 477-729 12-269 (330)
121 TIGR02800 propeller_TolB tol-p 94.6 8.6 0.00019 41.9 26.0 183 524-722 214-399 (417)
122 PTZ00421 coronin; Provisional 94.6 9.6 0.00021 42.4 23.8 153 556-727 138-297 (493)
123 COG1520 FOG: WD40-like repeat 94.5 8.3 0.00018 41.3 22.7 225 478-719 79-319 (370)
124 PF03178 CPSF_A: CPSF A subuni 94.4 2.9 6.3E-05 43.8 18.2 122 571-704 62-190 (321)
125 KOG2075|consensus 94.4 0.018 4E-07 60.1 1.4 55 221-275 169-223 (521)
126 smart00225 BTB Broad-Complex, 94.3 0.041 8.9E-07 44.9 3.1 45 218-262 46-90 (90)
127 KOG3840|consensus 94.2 0.55 1.2E-05 46.2 10.9 86 73-189 94-182 (438)
128 PF02191 OLF: Olfactomedin-lik 94.2 3.8 8.3E-05 40.8 17.3 159 555-726 30-209 (250)
129 PF09910 DUF2139: Uncharacteri 94.2 6.9 0.00015 39.2 18.4 155 538-702 27-219 (339)
130 KOG0310|consensus 94.1 8.2 0.00018 41.0 19.8 210 465-707 78-301 (487)
131 PF03178 CPSF_A: CPSF A subuni 94.0 3.6 7.9E-05 43.0 18.0 122 524-656 62-190 (321)
132 PRK03629 tolB translocation pr 93.9 12 0.00026 41.0 24.6 202 511-729 167-372 (429)
133 smart00284 OLF Olfactomedin-li 93.8 7.6 0.00016 38.6 19.3 161 487-656 62-242 (255)
134 KOG1665|consensus 93.6 0.29 6.2E-06 46.0 7.5 93 76-200 10-105 (302)
135 PLN02919 haloacid dehalogenase 93.5 24 0.00053 43.4 29.5 233 466-723 579-891 (1057)
136 PRK03629 tolB translocation pr 93.5 14 0.00031 40.4 27.8 188 524-727 223-413 (429)
137 PRK02889 tolB translocation pr 93.4 15 0.00032 40.3 25.3 225 477-721 176-404 (427)
138 PF10282 Lactonase: Lactonase, 92.7 15 0.00033 38.8 27.1 233 478-730 16-287 (345)
139 PLN00181 protein SPA1-RELATED; 92.6 28 0.00061 41.6 24.7 182 509-721 545-739 (793)
140 PLN02919 haloacid dehalogenase 92.1 38 0.00081 41.8 27.5 191 466-676 635-891 (1057)
141 PRK02889 tolB translocation pr 92.0 22 0.00047 38.9 22.2 191 523-728 175-368 (427)
142 PF03931 Skp1_POZ: Skp1 family 91.8 0.42 9.1E-06 36.1 5.2 55 77-168 3-58 (62)
143 PF09910 DUF2139: Uncharacteri 91.8 15 0.00034 36.8 21.0 156 490-655 26-219 (339)
144 PF12217 End_beta_propel: Cata 91.8 14 0.0003 36.1 18.2 159 500-658 76-258 (367)
145 TIGR02658 TTQ_MADH_Hv methylam 91.6 20 0.00044 37.7 28.0 68 649-723 259-333 (352)
146 PF06433 Me-amine-dh_H: Methyl 91.5 6 0.00013 40.9 14.4 234 473-724 63-324 (342)
147 TIGR03075 PQQ_enz_alc_DH PQQ-d 91.4 6.7 0.00014 44.1 16.3 117 551-679 65-197 (527)
148 COG4257 Vgb Streptogramin lyas 91.1 17 0.00037 36.0 20.0 224 476-728 82-313 (353)
149 PRK13684 Ycf48-like protein; P 91.1 23 0.00049 37.3 25.4 193 486-704 34-233 (334)
150 PLN00181 protein SPA1-RELATED; 90.7 44 0.00095 40.0 25.6 171 477-674 555-739 (793)
151 KOG2715|consensus 90.7 0.73 1.6E-05 41.2 6.1 101 75-205 21-121 (210)
152 PRK13684 Ycf48-like protein; P 90.3 27 0.00058 36.8 27.6 218 479-728 68-296 (334)
153 PF14870 PSII_BNR: Photosynthe 90.2 24 0.00053 36.3 25.1 221 478-729 38-270 (302)
154 PRK04043 tolB translocation pr 90.2 31 0.00068 37.5 27.2 190 524-728 213-408 (419)
155 PF02897 Peptidase_S9_N: Proly 89.8 26 0.00056 38.1 19.1 204 508-720 134-357 (414)
156 PRK04043 tolB translocation pr 89.8 34 0.00074 37.3 22.1 189 477-680 213-407 (419)
157 PF14870 PSII_BNR: Photosynthe 89.7 26 0.00057 36.0 22.5 240 440-704 39-294 (302)
158 PF10282 Lactonase: Lactonase, 89.5 31 0.00067 36.5 26.1 265 439-728 16-332 (345)
159 PTZ00420 coronin; Provisional 88.9 46 0.001 37.7 27.1 150 557-727 139-300 (568)
160 PRK10115 protease 2; Provision 88.2 59 0.0013 38.0 27.3 240 475-729 151-403 (686)
161 PF14583 Pectate_lyase22: Olig 87.6 27 0.00059 36.9 16.0 236 477-724 60-332 (386)
162 KOG1724|consensus 87.5 1 2.3E-05 41.2 5.1 54 152-205 48-126 (162)
163 TIGR02658 TTQ_MADH_Hv methylam 87.0 44 0.00095 35.2 23.5 107 477-589 27-146 (352)
164 PRK01742 tolB translocation pr 86.9 52 0.0011 36.0 22.1 153 555-727 214-368 (429)
165 PLN03215 ascorbic acid mannose 86.8 25 0.00055 37.1 15.3 96 533-637 189-305 (373)
166 PF01466 Skp1: Skp1 family, di 86.4 0.77 1.7E-05 36.5 3.2 35 174-208 11-45 (78)
167 PTZ00421 coronin; Provisional 86.1 62 0.0013 36.1 24.0 153 509-680 138-297 (493)
168 PF08268 FBA_3: F-box associat 85.8 8 0.00017 34.1 9.9 82 552-634 2-88 (129)
169 COG4257 Vgb Streptogramin lyas 85.5 41 0.00089 33.5 18.9 181 478-681 125-313 (353)
170 PF06433 Me-amine-dh_H: Methyl 85.4 12 0.00026 38.7 11.8 104 477-586 17-133 (342)
171 PF08268 FBA_3: F-box associat 85.1 9.6 0.00021 33.6 10.0 81 646-727 2-87 (129)
172 KOG2716|consensus 85.0 1.1 2.4E-05 43.4 4.1 60 206-267 42-103 (230)
173 PF11822 DUF3342: Domain of un 84.9 0.95 2.1E-05 45.9 3.7 79 212-322 47-126 (317)
174 PLN00033 photosystem II stabil 84.8 61 0.0013 34.9 24.2 217 480-728 113-364 (398)
175 PF13088 BNR_2: BNR repeat-lik 84.1 51 0.0011 33.3 16.5 215 485-701 28-275 (275)
176 KOG0316|consensus 83.7 41 0.00089 32.6 13.6 107 601-724 69-177 (307)
177 KOG0289|consensus 83.5 45 0.00097 35.3 14.8 143 545-705 347-496 (506)
178 PRK01742 tolB translocation pr 83.2 76 0.0017 34.7 24.7 181 524-727 228-411 (429)
179 KOG0316|consensus 81.8 53 0.0011 31.9 18.9 184 508-723 70-260 (307)
180 PLN03215 ascorbic acid mannose 81.4 74 0.0016 33.7 16.0 132 580-727 189-353 (373)
181 PRK10115 protease 2; Provision 81.2 1.2E+02 0.0026 35.6 24.4 249 421-682 137-403 (686)
182 KOG1332|consensus 81.1 57 0.0012 31.9 16.2 103 604-730 176-297 (299)
183 KOG1036|consensus 81.0 66 0.0014 32.5 16.3 154 525-701 36-203 (323)
184 KOG0646|consensus 80.7 41 0.00088 35.8 13.5 26 693-723 285-310 (476)
185 COG5201 SKP1 SCF ubiquitin lig 79.0 4.1 9E-05 34.8 4.8 55 153-207 44-123 (158)
186 KOG1036|consensus 78.5 79 0.0017 32.0 16.1 131 478-629 36-166 (323)
187 COG3823 Glutamine cyclotransfe 78.5 45 0.00097 31.8 11.7 161 502-685 49-219 (262)
188 KOG1332|consensus 78.2 71 0.0015 31.3 13.6 102 510-635 176-296 (299)
189 PLN00033 photosystem II stabil 77.4 1.1E+02 0.0024 33.0 25.7 197 483-704 162-389 (398)
190 PF02239 Cytochrom_D1: Cytochr 77.2 97 0.0021 33.1 16.0 233 476-733 15-268 (369)
191 PF02239 Cytochrom_D1: Cytochr 75.0 1.2E+02 0.0027 32.3 17.3 290 421-733 48-360 (369)
192 KOG0278|consensus 73.6 71 0.0015 31.3 11.9 132 476-626 164-299 (334)
193 PF12217 End_beta_propel: Cata 73.5 98 0.0021 30.5 20.7 142 470-611 95-258 (367)
194 KOG3545|consensus 73.4 98 0.0021 30.5 15.1 183 525-733 11-214 (249)
195 KOG2321|consensus 72.8 28 0.00061 38.1 10.0 116 591-723 132-261 (703)
196 TIGR03074 PQQ_membr_DH membran 72.2 2.1E+02 0.0046 33.8 20.4 118 549-679 188-352 (764)
197 KOG2723|consensus 71.2 14 0.00031 35.6 6.9 49 155-203 57-107 (221)
198 COG4880 Secreted protein conta 69.8 1.3E+02 0.0027 32.1 13.5 181 473-682 402-599 (603)
199 KOG0296|consensus 69.7 1.4E+02 0.0031 30.9 17.2 144 555-723 75-223 (399)
200 COG4946 Uncharacterized protei 69.4 1.7E+02 0.0037 31.6 17.1 223 477-727 59-302 (668)
201 PF13088 BNR_2: BNR repeat-lik 68.3 1.4E+02 0.003 30.1 18.5 201 532-734 28-256 (275)
202 KOG0296|consensus 67.6 1.6E+02 0.0035 30.6 17.7 144 508-676 75-223 (399)
203 KOG0281|consensus 66.5 1.2E+02 0.0026 31.2 12.3 96 599-708 326-421 (499)
204 KOG2321|consensus 66.0 1.1E+02 0.0024 33.8 12.7 74 545-629 133-208 (703)
205 KOG2048|consensus 65.4 2.4E+02 0.0052 31.9 25.7 223 474-729 44-286 (691)
206 KOG0289|consensus 65.2 2E+02 0.0042 30.8 17.5 130 501-649 350-485 (506)
207 KOG2048|consensus 65.1 2.4E+02 0.0053 31.8 23.0 261 434-728 221-513 (691)
208 KOG0266|consensus 64.0 2.3E+02 0.0051 31.2 23.8 182 508-721 214-410 (456)
209 PF14583 Pectate_lyase22: Olig 63.8 1.1E+02 0.0023 32.6 12.1 229 421-659 46-303 (386)
210 KOG0315|consensus 63.5 1.6E+02 0.0034 29.1 23.3 217 477-723 61-291 (311)
211 PTZ00420 coronin; Provisional 63.1 2.7E+02 0.0059 31.7 23.5 150 510-680 139-300 (568)
212 KOG0281|consensus 62.9 96 0.0021 31.9 10.9 166 505-706 203-379 (499)
213 COG4880 Secreted protein conta 59.5 2.2E+02 0.0047 30.4 13.0 180 520-729 402-599 (603)
214 KOG0305|consensus 59.0 2.9E+02 0.0062 30.6 19.8 225 477-743 197-436 (484)
215 KOG0286|consensus 58.7 2.1E+02 0.0045 28.9 22.6 210 478-721 78-304 (343)
216 KOG3545|consensus 56.7 2.1E+02 0.0045 28.3 17.0 198 479-702 12-235 (249)
217 PF01466 Skp1: Skp1 family, di 56.2 11 0.00024 29.9 2.7 35 238-272 12-46 (78)
218 KOG0266|consensus 56.1 3.2E+02 0.0068 30.2 20.7 188 464-674 212-410 (456)
219 COG0823 TolB Periplasmic compo 54.7 1.7E+02 0.0037 31.9 12.4 149 571-728 218-367 (425)
220 KOG0649|consensus 52.9 2.4E+02 0.0051 27.8 14.4 128 555-703 126-263 (325)
221 PRK02888 nitrous-oxide reducta 52.0 3.8E+02 0.0082 30.6 14.5 178 524-722 152-353 (635)
222 KOG0278|consensus 51.1 2.6E+02 0.0056 27.7 11.8 124 523-661 164-290 (334)
223 COG3823 Glutamine cyclotransfe 50.9 1.9E+02 0.0041 27.8 10.0 108 550-674 50-159 (262)
224 PRK01029 tolB translocation pr 50.6 3.7E+02 0.008 29.4 26.5 191 524-729 211-412 (428)
225 KOG0318|consensus 50.5 3.8E+02 0.0083 29.5 20.9 105 601-721 453-561 (603)
226 KOG0305|consensus 49.4 4E+02 0.0087 29.4 19.5 204 473-707 235-453 (484)
227 KOG0291|consensus 49.1 4.8E+02 0.01 30.2 24.2 151 509-680 319-473 (893)
228 PRK01029 tolB translocation pr 49.1 3.9E+02 0.0084 29.2 21.3 190 477-681 211-411 (428)
229 PF02214 BTB_2: BTB/POZ domain 48.5 14 0.0003 30.4 2.3 43 219-261 49-94 (94)
230 KOG1778|consensus 47.9 6.5 0.00014 40.4 0.2 92 76-202 28-121 (319)
231 TIGR03074 PQQ_membr_DH membran 47.6 5.5E+02 0.012 30.5 25.6 34 502-541 188-223 (764)
232 KOG0291|consensus 47.0 5.1E+02 0.011 30.0 22.3 140 476-633 329-473 (893)
233 KOG0265|consensus 45.6 3.5E+02 0.0075 27.6 12.6 131 508-674 58-205 (338)
234 PF08662 eIF2A: Eukaryotic tra 43.5 2.8E+02 0.0061 26.3 10.8 110 602-722 71-181 (194)
235 KOG0646|consensus 43.3 4E+02 0.0087 28.7 12.2 26 646-676 285-310 (476)
236 PF14781 BBS2_N: Ciliary BBSom 42.7 2.4E+02 0.0053 25.0 9.2 67 650-728 64-135 (136)
237 PF13570 PQQ_3: PQQ-like domai 42.2 80 0.0017 20.9 4.9 26 596-627 15-40 (40)
238 KOG1446|consensus 41.7 4E+02 0.0087 27.2 24.1 214 476-722 35-264 (311)
239 KOG1517|consensus 40.9 6.8E+02 0.015 30.4 14.4 204 489-722 1154-1383(1387)
240 KOG0308|consensus 40.3 5E+02 0.011 29.4 12.7 94 555-660 129-235 (735)
241 cd04379 RhoGAP_SYD1 RhoGAP_SYD 39.2 1.3E+02 0.0029 29.0 7.8 46 287-332 127-172 (207)
242 PF03000 NPH3: NPH3 family; I 38.5 1.6E+02 0.0035 29.5 8.3 156 155-347 68-234 (258)
243 KOG2111|consensus 38.2 4.6E+02 0.01 26.9 11.7 124 602-744 58-191 (346)
244 KOG3881|consensus 36.3 5.4E+02 0.012 27.2 12.6 147 509-675 161-322 (412)
245 KOG3881|consensus 36.3 5.5E+02 0.012 27.2 12.2 147 556-722 161-322 (412)
246 COG0823 TolB Periplasmic compo 35.0 6.3E+02 0.014 27.6 16.2 149 524-681 218-367 (425)
247 PRK02888 nitrous-oxide reducta 33.5 6.7E+02 0.014 28.8 12.8 52 618-674 296-352 (635)
248 KOG0270|consensus 33.2 6.5E+02 0.014 27.1 15.9 188 510-722 257-451 (463)
249 COG4447 Uncharacterized protei 31.6 5.6E+02 0.012 25.9 13.8 201 480-704 67-279 (339)
250 KOG2715|consensus 30.7 66 0.0014 29.3 3.7 50 219-268 72-121 (210)
251 KOG0274|consensus 30.1 8.5E+02 0.018 27.5 24.8 176 522-723 309-485 (537)
252 KOG1665|consensus 30.1 61 0.0013 31.0 3.5 45 219-263 60-105 (302)
253 KOG0640|consensus 28.9 3.3E+02 0.0071 27.8 8.4 96 463-565 224-326 (430)
254 KOG0272|consensus 28.8 7.5E+02 0.016 26.5 12.5 139 549-707 307-452 (459)
255 PF07734 FBA_1: F-box associat 28.1 4.7E+02 0.01 23.9 14.6 82 552-634 2-91 (164)
256 KOG0263|consensus 27.4 5.6E+02 0.012 29.5 10.9 107 598-721 541-650 (707)
257 KOG0308|consensus 26.7 8.9E+02 0.019 27.6 11.9 65 508-582 129-204 (735)
258 KOG0265|consensus 26.2 7.2E+02 0.016 25.4 11.5 60 555-632 58-126 (338)
259 KOG1523|consensus 25.2 7.7E+02 0.017 25.5 11.2 97 523-630 31-136 (361)
260 KOG0272|consensus 25.1 8.7E+02 0.019 26.0 13.0 109 508-636 314-426 (459)
261 KOG0649|consensus 24.9 6.9E+02 0.015 24.7 17.9 129 507-656 125-263 (325)
262 COG3386 Gluconolactonase [Carb 24.4 8E+02 0.017 25.4 20.4 195 524-739 47-261 (307)
263 KOG0306|consensus 24.2 1.2E+03 0.026 27.2 14.8 65 503-580 378-443 (888)
264 PF07734 FBA_1: F-box associat 23.1 5.8E+02 0.013 23.3 14.5 127 599-728 2-147 (164)
265 PF05262 Borrelia_P83: Borreli 23.0 4.9E+02 0.011 28.9 9.3 84 616-702 373-456 (489)
266 KOG0315|consensus 22.7 7.7E+02 0.017 24.5 20.5 186 508-722 51-247 (311)
267 KOG1898|consensus 22.3 1.5E+03 0.032 27.7 16.0 167 566-742 848-1028(1205)
268 cd04404 RhoGAP-p50rhoGAP RhoGA 21.0 4.6E+02 0.01 24.8 8.0 42 287-328 125-166 (195)
269 KOG0294|consensus 20.9 5.9E+02 0.013 26.2 8.6 94 624-730 25-123 (362)
270 PF05262 Borrelia_P83: Borreli 20.9 5.9E+02 0.013 28.2 9.4 87 520-609 371-457 (489)
271 KOG0282|consensus 20.8 6.1E+02 0.013 27.6 9.1 51 477-535 280-333 (503)
272 COG4946 Uncharacterized protei 20.8 1.1E+03 0.024 25.7 22.2 98 525-634 342-439 (668)
No 1
>KOG4441|consensus
Probab=100.00 E-value=1.7e-97 Score=819.13 Aligned_cols=560 Identities=48% Similarity=0.845 Sum_probs=526.9
Q ss_pred ccceecchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehh
Q psy10286 48 ECLVFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVL 127 (748)
Q Consensus 48 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~ 127 (748)
....+....|...+++.|+.+++++.+|||++.+++++|+|||.||||+|+||++||+++++|+.+..|.+
T Consensus 10 ~~~~~~~~~h~~~~l~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~~~~~i~l--------- 80 (571)
T KOG4441|consen 10 STSEFTDPSHSKFLLQGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKESKQKEINL--------- 80 (571)
T ss_pred cccccccHHHHHHHHHHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccccceEEEE---------
Confidence 34567888999999999999999999999999999999999999999999999999999888887777666
Q ss_pred hccccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhccc
Q psy10286 128 AATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFH 207 (748)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~ 207 (748)
.++++++++.+|+|+|||++.|+.+||++|+.+|++|||+.++++|++||+++++
T Consensus 81 -------------------------~~v~~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~~~l~ 135 (571)
T KOG4441|consen 81 -------------------------EGVDPETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPEVVDACCEFLESQLD 135 (571)
T ss_pred -------------------------ecCCHHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 8899999999999999999999999999999999999999999999999999887
Q ss_pred CCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCch
Q psy10286 208 PNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCL 287 (748)
Q Consensus 208 ~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~ 287 (748)
++||++| ..+|+.+++.
T Consensus 136 ~~Nclgi---------------------------------------------------------------~~~a~~~~~~ 152 (571)
T KOG4441|consen 136 PSNCLGI---------------------------------------------------------------RRFAELHSCT 152 (571)
T ss_pred HHHHHHH---------------------------------------------------------------HHHHHhcCcH
Confidence 7777664 4456778888
Q ss_pred HHHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCCCC
Q psy10286 288 QLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLS 367 (748)
Q Consensus 288 ~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~l~ 367 (748)
+|.+.+..|+.+||.++.++++|.+|+.+.|..++.++.|++.+|++||+++++|++++.+.|+.+++.+++++|+++++
T Consensus 153 ~L~~~a~~~i~~~F~~v~~~eefl~L~~~~l~~ll~~d~l~v~~E~~vf~a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~ 232 (571)
T KOG4441|consen 153 ELLEVADEYILQHFAEVSKTEEFLLLSLEELIGLLSSDDLNVDSEEEVFEAAMRWVKHDFEEREEHLPALLEAVRLPLLP 232 (571)
T ss_pred HHHHHHHHHHHHHHHHHhccHHhhCCCHHHHHhhccccCCCcCCHHHHHHHHHHHHhcCHhhHHHHHHHHHHhcCccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhccchhhccChhhhHHHHHHHhhccCcccccccCCCccCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCC
Q psy10286 368 PHYLADRVATEALIRSSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLV 447 (748)
Q Consensus 368 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~ 447 (748)
+.+|.+.+...+++..+..|++++.++++|+..+.++..++.++++||. ...+.||++||+....
T Consensus 233 ~~~l~~~v~~~~~~~~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~--~~~~~l~~vGG~~~~~------------- 297 (571)
T KOG4441|consen 233 PQFLVEIVESEPLIKRDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRR--SVSGKLVAVGGYNRQG------------- 297 (571)
T ss_pred HHHHHHHHhhhhhhccCHHHHHHHHHHHHHhhCcccCccccCCCcccCc--CCCCeEEEECCCCCCC-------------
Confidence 9999999999999999999999999999999999887778888888886 4678999999986422
Q ss_pred CceeecccccccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCC-CCCCCCeE
Q psy10286 448 GRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN-GSERLSTV 526 (748)
Q Consensus 448 ~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v 526 (748)
...+.+..||+.+++|..+++||.+|..+++++++|+||++||.+ +...++++
T Consensus 298 --------------------------~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~v 351 (571)
T KOG4441|consen 298 --------------------------QSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSV 351 (571)
T ss_pred --------------------------cccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceE
Confidence 566889999999999999999999999999999999999999999 78889999
Q ss_pred EEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEE
Q psy10286 527 EEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVY 606 (748)
Q Consensus 527 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy 606 (748)
|+|||.+++|..+++|+.+|..+++++++|.||++||.++...++++++|||.+++|+.+++|+.+|.+|++++++|+||
T Consensus 352 e~YD~~~~~W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 352 ERYDPRTNQWTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLY 431 (571)
T ss_pred EEecCCCCceeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCc-ccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCC
Q psy10286 607 ALGGHDGLS-IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNV 685 (748)
Q Consensus 607 v~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~ 685 (748)
++||.++.. .++++++|||.+++|+.+++|+.+|.++++++++++||++||+++.....++++|||.+++|+.+++|+.
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~ 511 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS 511 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence 999998877 8999999999999999999999999999999999999999999997778899999999999999999999
Q ss_pred CCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCCCCCcceEEEEeecC
Q psy10286 686 MRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIPIC 745 (748)
Q Consensus 686 ~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 745 (748)
+|.+++++++++++|++||+++..++++|++|||.+++|+..+++...|.+.+|+++..|
T Consensus 512 ~rs~~g~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~~~~~~~~~~~~~~~~~ 571 (571)
T KOG4441|consen 512 PRSAVGVVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTEPESGRGGAGVAVIPMP 571 (571)
T ss_pred ccccccEEEECCEEEEEecccCccccceeEEcCCCCCceeeCCCccccccCcceEEecCC
Confidence 999999999999999999999999999999999999999999997778888888877654
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=1.1e-87 Score=746.45 Aligned_cols=519 Identities=18% Similarity=0.348 Sum_probs=453.5
Q ss_pred eecchhhHhhHHHHHHHHHhcCCcccEEEEEC-CeEEeeeeeeeeccCHHHHHhhcccccccc-cceeeeecchheehhh
Q psy10286 51 VFQQLDLFSQGFPVMEEIRRQGKLCDVTIKVD-DQSFTCHRIVLAATIPYFQAMFTSDMAESK-QREITMQGIDAVIVLA 128 (748)
Q Consensus 51 ~~~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~-~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~-~~~~~~~~~~~~~~~~ 128 (748)
++.+..|...+++.|++|++++.+|||+|.++ |++|+|||+||||+|+||++||+++++|.. +..|.+
T Consensus 2 ~~~~~~h~~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l---------- 71 (557)
T PHA02713 2 DIDDIKHNRRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNL---------- 71 (557)
T ss_pred CcchhhhhHHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEe----------
Confidence 45667899999999999999999999999997 899999999999999999999999888753 455555
Q ss_pred ccccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccC
Q psy10286 129 ATIPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHP 208 (748)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~ 208 (748)
+++++++|+.+|+|+|||+ ++.+||++|+.+|++||++.|+++|++||++++++
T Consensus 72 ------------------------~~v~~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~ 125 (557)
T PHA02713 72 ------------------------QMFDKDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNH 125 (557)
T ss_pred ------------------------ccCCHHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCc
Confidence 8999999999999999998 68899999999999999999999999999998888
Q ss_pred CcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchH
Q psy10286 209 NNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQ 288 (748)
Q Consensus 209 ~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~ 288 (748)
+||++++ .++..+.+.+
T Consensus 126 ~NCl~i~---------------------------------------------------------------~~~~~~~~~~ 142 (557)
T PHA02713 126 DTCIYMY---------------------------------------------------------------HRLYEMSHIP 142 (557)
T ss_pred cchHHHH---------------------------------------------------------------HHHHhccchH
Confidence 8887643 2233445567
Q ss_pred HHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCC-cCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCCCC
Q psy10286 289 LSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSE-LHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLS 367 (748)
Q Consensus 289 l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~-l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~l~ 367 (748)
|.++|.+||.+||.++.++++|..|+.+.|.++|++++ |++.+|++||+++++|++|+...|++ +.+++++|||+++.
T Consensus 143 L~~~a~~~i~~~f~~v~~~~ef~~L~~~~l~~lL~~d~~l~v~~Ee~v~eav~~W~~~d~~~r~~-~~~ll~~VR~~~l~ 221 (557)
T PHA02713 143 IVKYIKRMLMSNIPTLITTDAFKKTVFEILFDIISTNDNVYLYREGYKVTILLKWLEYNYITEEQ-LLCILSCIDIQNLD 221 (557)
T ss_pred HHHHHHHHHHHHHHHHhCChhhhhCCHHHHHHHhccccccCCCcHHHHHHHHHHHHhcCHHHHHH-HhhhHhhhhHhhcc
Confidence 88999999999999999999999999999999999987 78999999999999999999876655 66999999999999
Q ss_pred hHHHHhhhccchhhccChhhhHHHHHHHhhccCcccccccCCCccCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCC
Q psy10286 368 PHYLADRVATEALIRSSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLV 447 (748)
Q Consensus 368 ~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~ 447 (748)
+.++. .+...+++...+.|.+.+.++..++ ...||. ..+++.||...
T Consensus 222 ~~~~~-~~~~~~~i~~~~~c~~~l~~a~~~~------------~~~~r~-----~~l~~~~g~~~--------------- 268 (557)
T PHA02713 222 KKSRL-LLYSNKTINMYPSCIQFLLDNKQNR------------NIIPRQ-----LCLVCHDTKYN--------------- 268 (557)
T ss_pred hhhhh-hhcchHHHHhhHHHHHHHhhhhhhc------------ccCCcc-----eEEEEecCccc---------------
Confidence 98876 5556678888889998887765321 123443 34666655211
Q ss_pred CceeecccccccceEEecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCC-CCCCCCeE
Q psy10286 448 GRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYN-GSERLSTV 526 (748)
Q Consensus 448 ~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~v 526 (748)
.....+++||+.+++|..+++||.+|.++++++++|+|||+||.+ +....+++
T Consensus 269 --------------------------~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v 322 (557)
T PHA02713 269 --------------------------VCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKV 322 (557)
T ss_pred --------------------------cCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceE
Confidence 122468999999999999999999999999999999999999975 34457899
Q ss_pred EEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEE
Q psy10286 527 EEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVY 606 (748)
Q Consensus 527 ~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy 606 (748)
++|||.+++|..+++||.+|.++++++++|+||++||.++...++++++|||.+++|+.+++||.+|..+++++++|+||
T Consensus 323 ~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IY 402 (557)
T PHA02713 323 YKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIY 402 (557)
T ss_pred EEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEE
Confidence 99999999999999999999999999999999999999877778899999999999999999999999999999999999
Q ss_pred EEccCCCCc------------------ccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCcc-ccEE
Q psy10286 607 ALGGHDGLS------------------IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIF-LQSV 667 (748)
Q Consensus 607 v~GG~~~~~------------------~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~-~~~v 667 (748)
++||.++.. ..+.+++|||.+++|+.+++|+.+|..+++++++|+|||+||.++... .+.+
T Consensus 403 viGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~v 482 (557)
T PHA02713 403 IIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCI 482 (557)
T ss_pred EEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeE
Confidence 999986421 257899999999999999999999999999999999999999875433 3568
Q ss_pred EEEeCCC-CcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCC
Q psy10286 668 EMYDPIT-DEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMC 731 (748)
Q Consensus 668 ~~yd~~~-~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~ 731 (748)
++|||.+ ++|+.+++||.+|..+++++++|+||++||+++. .++++||+.+++|+.+.+-.
T Consensus 483 e~Ydp~~~~~W~~~~~m~~~r~~~~~~~~~~~iyv~Gg~~~~---~~~e~yd~~~~~W~~~~~~~ 544 (557)
T PHA02713 483 FRYNTNTYNGWELITTTESRLSALHTILHDNTIMMLHCYESY---MLQDTFNVYTYEWNHICHQH 544 (557)
T ss_pred EEecCCCCCCeeEccccCcccccceeEEECCEEEEEeeecce---eehhhcCcccccccchhhhc
Confidence 9999999 8999999999999999999999999999998864 47999999999999887643
No 3
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=2.3e-77 Score=672.77 Aligned_cols=512 Identities=23% Similarity=0.446 Sum_probs=437.6
Q ss_pred cCCcccEEEEE--CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccce
Q psy10286 71 QGKLCDVTIKV--DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQR 148 (748)
Q Consensus 71 ~~~~~Dv~i~~--~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (748)
++.+|||+|++ +|++|+|||.||+++|+||++||.++++ ...|.+
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~---~~~i~l------------------------------ 52 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFK---ENEINL------------------------------ 52 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCC---CceEEe------------------------------
Confidence 89999999998 9999999999999999999999998876 334444
Q ss_pred eeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHH
Q psy10286 149 EITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALIN 228 (748)
Q Consensus 149 ~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~ 228 (748)
++ ++++|+.+|+|+|||++.++.+++++|+.+|++||++.|++.|++||.++++.+||
T Consensus 53 ----~~-~~~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~~~l~~~nc----------------- 110 (534)
T PHA03098 53 ----NI-DYDSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDFLINLCINYIIKIIDDNNC----------------- 110 (534)
T ss_pred ----cC-CHHHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhCCHhHH-----------------
Confidence 78 99999999999999999999999999999999999999998888888776555554
Q ss_pred hhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHhhhhhccCc
Q psy10286 229 FAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSD 308 (748)
Q Consensus 229 ~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~l~~~~ 308 (748)
+.++.+|+.+++.+|.++|++||.+||.++.+++
T Consensus 111 ----------------------------------------------~~~~~~a~~~~~~~L~~~~~~~i~~nf~~v~~~~ 144 (534)
T PHA03098 111 ----------------------------------------------IDIYRFSFFYGCKKLYSAAYNYIRNNIELIYNDP 144 (534)
T ss_pred ----------------------------------------------HHHHHHHHHcCcHHHHHHHHHHHHHHHHHHhcCc
Confidence 4555667788889999999999999999999999
Q ss_pred ccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCCCChHHHHhhhc------cchhhc
Q psy10286 309 EFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVA------TEALIR 382 (748)
Q Consensus 309 ~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~l~~~~l~~~~~------~~~l~~ 382 (748)
+|..|+.+.|..+|+++.|.+.+|++||+++++|++++.++|.+++.+++++|||++|++++|.+... ...++
T Consensus 145 ~f~~l~~~~l~~ll~~~~L~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~~- 223 (534)
T PHA03098 145 DFIYLSKNELIKILSDDKLNVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKIV- 223 (534)
T ss_pred hhhcCCHHHHHHHhcCCCcCcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCccee-
Confidence 99999999999999999999999999999999999999999999999999999999999999877653 34444
Q ss_pred cChhhhHHHHHHHhhccCcccccccCCCccCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceE
Q psy10286 383 SSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAV 462 (748)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~ 462 (748)
....|...+..+..+.. ...+|.. ..+..+++.||...
T Consensus 224 ~~~~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~~~g~~~------------------------------ 261 (534)
T PHA03098 224 FNKRCIKIIYSKKYNLN-----------KILPRSS-TFGSIIYIHITMSI------------------------------ 261 (534)
T ss_pred ccccchHHHHHHHhccc-----------CCCcCcc-CCCcceEeecccch------------------------------
Confidence 56678877766655421 0112221 12345666565421
Q ss_pred EecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCC-CCCeEEEEECCCCeEEEccC
Q psy10286 463 ISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSE-RLSTVEEFDPVRRVWNKVSP 541 (748)
Q Consensus 463 ~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~v~~yd~~t~~W~~~~~ 541 (748)
....+..|++.+++|..+++.+. +..|+++++++.||++||..+.. ..+++++||+.+++|..+++
T Consensus 262 ------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 328 (534)
T PHA03098 262 ------------FTYNYITNYSPLSEINTIIDIHY-VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPE 328 (534)
T ss_pred ------------hhceeeecchhhhhcccccCccc-cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCC
Confidence 11234568888888988876664 44578899999999999987533 45789999999999999999
Q ss_pred CCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCC-CcccCeE
Q psy10286 542 MCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDG-LSIFDSV 620 (748)
Q Consensus 542 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~ 620 (748)
||.+|.+|++++++++||++||.++...++++++||+.+++|+..+++|.+|.+|+++.++++||++||... ...++++
T Consensus 329 ~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v 408 (534)
T PHA03098 329 LIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTV 408 (534)
T ss_pred CCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceE
Confidence 999999999999999999999998766789999999999999999999999999999999999999999743 3346899
Q ss_pred EEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCc---cccEEEEEeCCCCcEEEccCCCCCCcceEEEEECC
Q psy10286 621 ERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAI---FLQSVEMYDPITDEWKMIASMNVMRSRVALVANMG 697 (748)
Q Consensus 621 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~---~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 697 (748)
++||+.+++|+.++++|.+|.+|+++.++++||++||.+... ..+.+++||+.+++|+.++++|.+|.+++++.+++
T Consensus 409 ~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 488 (534)
T PHA03098 409 ECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIFNN 488 (534)
T ss_pred EEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEECC
Confidence 999999999999999999999999999999999999976543 25679999999999999999999999999999999
Q ss_pred EEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCCCCCcceEE
Q psy10286 698 KLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGV 739 (748)
Q Consensus 698 ~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 739 (748)
+|||+||.++....+++++||+.+++|+.++.+|.......+
T Consensus 489 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~ 530 (534)
T PHA03098 489 KIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGSLEK 530 (534)
T ss_pred EEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccceee
Confidence 999999998776678999999999999999998876655443
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=9.4e-74 Score=627.26 Aligned_cols=465 Identities=20% Similarity=0.352 Sum_probs=380.2
Q ss_pred HHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccc
Q psy10286 62 FPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSD 141 (748)
Q Consensus 62 ~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (748)
-+.+..|+.++++|||++.++ ++|+|||+||||.|+|||+||.++++|+.. .+.+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~-~~~~~HR~VLAa~S~YFraMF~~~~~Es~~-~v~~----------------------- 64 (480)
T PHA02790 10 CKNILALSMTKKFKTIIEAIG-GNIIVNSTILKKLSPYFRTHLRQKYTKNKD-PVTR----------------------- 64 (480)
T ss_pred hhhHHHHHhhhhhceEEEEcC-cEEeeehhhhhhcCHHHHHHhcCCcccccc-ceEE-----------------------
Confidence 356788999999999998864 699999999999999999999999988743 3333
Q ss_pred cccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhh
Q psy10286 142 MAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCR 221 (748)
Q Consensus 142 ~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~ 221 (748)
...++++++|+.+|+|+|||++.++.+||++|+.||++||++.++++|++||+++++++||++
T Consensus 65 ---------~~~~v~~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~~~l~~~NCl~-------- 127 (480)
T PHA02790 65 ---------VCLDLDIHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEFIIYTCINFILRDFRKEYCVE-------- 127 (480)
T ss_pred ---------EecCcCHHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHHHHHHHHHHHHhhCCcchHHH--------
Confidence 113899999999999999999999999999999999999999999999888888766666654
Q ss_pred HHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHhh
Q psy10286 222 AMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYF 301 (748)
Q Consensus 222 ~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~~ 301 (748)
++.+|+.|++.+|.+++.+||.+||
T Consensus 128 -------------------------------------------------------i~~~A~~y~~~~L~~~a~~fi~~nF 152 (480)
T PHA02790 128 -------------------------------------------------------CYMMGIEYGLSNLLCHTKDFIAKHF 152 (480)
T ss_pred -------------------------------------------------------HHHHHHHhCHHHHHHHHHHHHHHhH
Confidence 4556777888899999999999999
Q ss_pred hhhccC--cccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhh-ccCCCCChHHHHhhhccc
Q psy10286 302 HEVSMS--DEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAA-VRLPLLSPHYLADRVATE 378 (748)
Q Consensus 302 ~~l~~~--~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~-vR~~~l~~~~l~~~~~~~ 378 (748)
.++.++ ++|..|+. .++|++|+|++.+|++||+++++|++++. .+...+.++++. +|++++++..+..
T Consensus 153 ~~v~~~~~~ef~~L~~---~~lLssd~L~v~~Ee~V~eav~~Wl~~~~-~~~~~l~~~vr~~ir~~~l~~~~l~~----- 223 (480)
T PHA02790 153 LELEDDIIDNFDYLSM---KLILESDELNVPDEDYVVDFVIKWYMKRR-NRLGNLLLLIKNVIRSNYLSPRGINN----- 223 (480)
T ss_pred HHHhcccchhhhhCCH---HHhcccccCCCccHHHHHHHHHHHHHhhH-HHHHHHHHHHHhcCChhhCCHHHHHH-----
Confidence 999986 89999986 67999999999999999999999999742 222233333333 6777777665531
Q ss_pred hhhccChhhhHHHHHHHhhccCcccccccCCCccCCCccCCcCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccc
Q psy10286 379 ALIRSSHECRDLVDEARDFHLMPERRFLLAGEKTTPRRCNYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETL 458 (748)
Q Consensus 379 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~ 458 (748)
+..++.++..++.. ..||.... +..++
T Consensus 224 --------~~~~~~~~~~~~~~-----------~~~r~~~~-----~~~~~----------------------------- 250 (480)
T PHA02790 224 --------VKWILDCTKIFHCD-----------KQPRKSYK-----YPFIE----------------------------- 250 (480)
T ss_pred --------HHHHHHHHHHhhcc-----------cccccccc-----ccccc-----------------------------
Confidence 22233333332211 12232100 00000
Q ss_pred cceEEecccccccCCCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEE
Q psy10286 459 SNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNK 538 (748)
Q Consensus 459 ~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~ 538 (748)
+.+..++|.... ....++.+++.||++||.++....+.+++|||.+++|..
T Consensus 251 -----------------------~~~~~~~~~~~~------~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~ 301 (480)
T PHA02790 251 -----------------------YPMNMDQIIDIF------HMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIP 301 (480)
T ss_pred -----------------------cCCcccceeecc------CCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEE
Confidence 223444565432 112235589999999998766677899999999999999
Q ss_pred ccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccC
Q psy10286 539 VSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFD 618 (748)
Q Consensus 539 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 618 (748)
+++|+.+|..+++++++|+||++||.++ .+++++|||.+++|+.+++||.+|.++++++++|+||++||.++. .+
T Consensus 302 ~~~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~--~~ 376 (480)
T PHA02790 302 IPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET--DT 376 (480)
T ss_pred CCCCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC--Cc
Confidence 9999999999999999999999999753 267999999999999999999999999999999999999998643 36
Q ss_pred eEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCE
Q psy10286 619 SVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGK 698 (748)
Q Consensus 619 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 698 (748)
.+++|||.+++|+.+++|+.+|..+++++++|+||++||. +++||+++++|+.+++|+.+|.++++++++|+
T Consensus 377 ~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~~ 448 (480)
T PHA02790 377 TTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLIDDPIYPRDNPELIIVDNK 448 (480)
T ss_pred cEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcCCCCCCccccEEEEECCE
Confidence 7999999999999999999999999999999999999983 68899999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 699 LWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 699 l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
|||+||.++....+++++|||++++|+..
T Consensus 449 IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 449 LLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred EEEECCcCCCcccceEEEEECCCCeEEec
Confidence 99999998666678999999999999864
No 5
>KOG4441|consensus
Probab=100.00 E-value=4.4e-54 Score=474.60 Aligned_cols=238 Identities=47% Similarity=0.835 Sum_probs=228.0
Q ss_pred EECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCC-CCCCCceEEEEeCCCCeE
Q psy10286 506 VMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD-GVSSLNTVECYEPDKDQW 583 (748)
Q Consensus 506 ~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W 583 (748)
...+.||++||..+ ....+.++.|||.+++|...++||.+|..+++++++|+||++||.+ +...++++|+|||.+++|
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W 361 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQW 361 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEECCEEEEEccccCCCcccceEEEecCCCCce
Confidence 45789999999986 6678899999999999999999999999999999999999999999 788899999999999999
Q ss_pred EEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCc-
Q psy10286 584 RIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAI- 662 (748)
Q Consensus 584 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~- 662 (748)
+.+++|+.+|.++++++++|.||++||.++...++++++|||.+++|+.+++|+.+|.+|++++++++||++||.++..
T Consensus 362 ~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~ 441 (571)
T KOG4441|consen 362 TPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSN 441 (571)
T ss_pred eccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998877
Q ss_pred cccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCCCCCcceEEEEe
Q psy10286 663 FLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742 (748)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 742 (748)
.++++++|||.+++|+.+++|+.+|.++++++++++||++||+++.....+|+.|||.+++|+.+++|+.+|..++++++
T Consensus 442 ~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~ 521 (571)
T KOG4441|consen 442 CLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL 521 (571)
T ss_pred ccceEEEEcCCCCceeecCCcccccccceEEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE
Confidence 89999999999999999999999999999999999999999999976778899999999999999999999999999887
Q ss_pred e
Q psy10286 743 P 743 (748)
Q Consensus 743 ~ 743 (748)
-
T Consensus 522 ~ 522 (571)
T KOG4441|consen 522 G 522 (571)
T ss_pred C
Confidence 3
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=4.2e-47 Score=422.02 Aligned_cols=233 Identities=18% Similarity=0.304 Sum_probs=207.3
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCC-CCCCCceEEEEeCCCCeEEEccC
Q psy10286 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD-GVSSLNTVECYEPDKDQWRIVKS 588 (748)
Q Consensus 510 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~ 588 (748)
.+++.||..+ .....+++||+.+++|..+++||.+|.++++++++++||++||.+ +...++++++|||.+++|..+++
T Consensus 259 ~l~~~~g~~~-~~~~~v~~yd~~~~~W~~l~~mp~~r~~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~ 337 (557)
T PHA02713 259 CLVCHDTKYN-VCNPCILVYNINTMEYSVISTIPNHIINYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPP 337 (557)
T ss_pred EEEEecCccc-cCCCCEEEEeCCCCeEEECCCCCccccceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCC
Confidence 3455555321 233578999999999999999999999999999999999999976 34467899999999999999999
Q ss_pred CCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCc------
Q psy10286 589 MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAI------ 662 (748)
Q Consensus 589 ~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~------ 662 (748)
||.+|..+++++++|+||++||.++....+++++|||.+++|+.+++||.+|..+++++++|+||++||.++..
T Consensus 338 m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~ 417 (557)
T PHA02713 338 MIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVH 417 (557)
T ss_pred CcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccc
Confidence 99999999999999999999999876677899999999999999999999999999999999999999986421
Q ss_pred ------------cccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCC-CCeEEEEeCCC-CceEecC
Q psy10286 663 ------------FLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSN-LPTVEVYDPST-DSWAFVA 728 (748)
Q Consensus 663 ------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~-~~~v~~yd~~~-~~W~~~~ 728 (748)
..+++++|||.+++|+.+++|+.+|..+++++++|+|||+||.++... .+.+++|||++ ++|+.++
T Consensus 418 ~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~ 497 (557)
T PHA02713 418 HMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT 497 (557)
T ss_pred ccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc
Confidence 257899999999999999999999999999999999999999875433 34689999999 8999999
Q ss_pred CCCCCCcceEEEEee
Q psy10286 729 PMCAHEGGVGVGVIP 743 (748)
Q Consensus 729 ~~~~~r~~~~~~~~~ 743 (748)
+||.+|..++++++.
T Consensus 498 ~m~~~r~~~~~~~~~ 512 (557)
T PHA02713 498 TTESRLSALHTILHD 512 (557)
T ss_pred ccCcccccceeEEEC
Confidence 999999999999874
No 7
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=9.6e-42 Score=383.86 Aligned_cols=404 Identities=20% Similarity=0.354 Sum_probs=292.9
Q ss_pred EeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhc
Q psy10286 173 TIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFL 252 (748)
Q Consensus 173 ~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~ 252 (748)
.++.+|+.+++.+|..+.++.|.+.|.+|+.+ |+.++.+..+|.
T Consensus 104 ~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~------------------------------------nf~~v~~~~~f~ 147 (534)
T PHA03098 104 IIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRN------------------------------------NIELIYNDPDFI 147 (534)
T ss_pred hCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHH------------------------------------HHHHHhcCchhh
Confidence 36788999999999999999999999999877 455666666666
Q ss_pred CcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHH-------HhhhhhccCcccccCCHHhHhcccc--
Q psy10286 253 QMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQ-------QYFHEVSMSDEFIGLGVNEVNDIVK-- 323 (748)
Q Consensus 253 ~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~-------~~~~~l~~~~~f~~L~~~~l~~il~-- 323 (748)
+|+. +.....|. .+.+ ..-+.+++++++++|+. +++.++++.++|..|+.+.|..+..
T Consensus 148 ~l~~--~~l~~ll~----~~~L-------~v~~E~~v~~av~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~ 214 (534)
T PHA03098 148 YLSK--NELIKILS----DDKL-------NVSSEDVVLEIIIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWK 214 (534)
T ss_pred cCCH--HHHHHHhc----CCCc-------CcCCHHHHHHHHHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHH
Confidence 6641 11112222 1110 01134579999999995 3678999999999999999988764
Q ss_pred ----cCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCCCChHHHHhhhccchhhccChhhhHHHHHHHhhcc
Q psy10286 324 ----RSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLADRVATEALIRSSHECRDLVDEARDFHL 399 (748)
Q Consensus 324 ----~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~l~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 399 (748)
.+.+. .++. ....+..-..+....+ .|..... ..+ ++.. ... ........+..
T Consensus 215 ~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~----------~~~~~~~-~~~--------~~~~-g~~-~~~~~~~~~~~ 271 (534)
T PHA03098 215 LRIKKKKIV-FNKR-CIKIIYSKKYNLNKIL----------PRSSTFG-SII--------YIHI-TMS-IFTYNYITNYS 271 (534)
T ss_pred hhcCCccee-cccc-chHHHHHHHhcccCCC----------cCccCCC-cce--------Eeec-ccc-hhhceeeecch
Confidence 33433 2332 1111111000000000 0100000 000 0000 000 00000001111
Q ss_pred CcccccccCCCccCCCcc---CCcCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceEEecccccccCCCcc
Q psy10286 400 MPERRFLLAGEKTTPRRC---NYVMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSL 476 (748)
Q Consensus 400 ~~~~~~~~~~~~~~~r~~---~~~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~ 476 (748)
....|..+.... .+.+ ...++.||++||....+ ...
T Consensus 272 ~~~~~~~~~~~~--~~~~~~~~~~~~~lyv~GG~~~~~---------------------------------------~~~ 310 (534)
T PHA03098 272 PLSEINTIIDIH--YVYCFGSVVLNNVIYFIGGMNKNN---------------------------------------LSV 310 (534)
T ss_pred hhhhcccccCcc--ccccceEEEECCEEEEECCCcCCC---------------------------------------Cee
Confidence 111122121111 1222 23789999999985432 344
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 556 (748)
++++.||+.+++|..++++|.+|.+|++++++++||++||.++....+++++||+.+++|+..+++|.+|.+|+++.+++
T Consensus 311 ~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~ 390 (534)
T PHA03098 311 NSVVSYDTKTKSWNKVPELIYPRKNPGVTVFNNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNN 390 (534)
T ss_pred ccEEEEeCCCCeeeECCCCCcccccceEEEECCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECC
Confidence 68999999999999999999999999999999999999999876678899999999999999999999999999999999
Q ss_pred EEEEEeCCCC-CCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCc---ccCeEEEEECCCCcEEE
Q psy10286 557 KLYVCGGYDG-VSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLS---IFDSVERYDPKTDEWTS 632 (748)
Q Consensus 557 ~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~~ 632 (748)
+||++||... ...++++++||+.+++|+.++++|.+|.+|++++++++||++||.+... ..+.+++||+.+++|+.
T Consensus 391 ~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~ 470 (534)
T PHA03098 391 LIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTE 470 (534)
T ss_pred EEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceee
Confidence 9999999753 3457899999999999999999999999999999999999999985432 35679999999999999
Q ss_pred ccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcc
Q psy10286 633 VKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSR 689 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~ 689 (748)
++++|.+|..+++++++++|||+||.++....+++++||+.+++|+.++.+|.....
T Consensus 471 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~ 527 (534)
T PHA03098 471 LSSLNFPRINASLCIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFPKVIGS 527 (534)
T ss_pred CCCCCcccccceEEEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCcccccc
Confidence 999999999999999999999999998776688999999999999999887765443
No 8
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=2e-39 Score=354.95 Aligned_cols=261 Identities=22% Similarity=0.392 Sum_probs=223.4
Q ss_pred EEEEeCCC----CceEEccC---CCcccceeEEEEECCEEEEEccCCC-C-CCCCeEEEEECCCCeEEEccC---CCC-C
Q psy10286 479 VEVFDPLV----GRWQMAEA---MSMLRSRVGVAVMKNRLYAFGGYNG-S-ERLSTVEEFDPVRRVWNKVSP---MCF-K 545 (748)
Q Consensus 479 ~~~yd~~~----~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~-~-~~~~~v~~yd~~t~~W~~~~~---~~~-~ 545 (748)
++.+++.+ ++|..+.+ +|.+|.+|++++++++|||+||... . ...+++|+||+.+++|+.+++ +|. +
T Consensus 139 ~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~ 218 (470)
T PLN02193 139 AYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLS 218 (470)
T ss_pred EEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCc
Confidence 34446655 79998876 5889999999999999999999753 2 234689999999999998764 343 3
Q ss_pred cceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC---CCCCcceEEEEECCEEEEEccCCCCcccCeEEE
Q psy10286 546 RSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM---QKHRSAGGVIAFDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 546 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
|.+|++++++++||++||.++...++++++||+.+++|+.++++ |.+|..|++++++++||++||.++....+++++
T Consensus 219 ~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~ 298 (470)
T PLN02193 219 CLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDS 298 (470)
T ss_pred ccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEE
Confidence 56889999999999999998777789999999999999999887 889999999999999999999987777889999
Q ss_pred EECCCCcEEEccC---CCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccC---CCCCCcceEEEEEC
Q psy10286 623 YDPKTDEWTSVKP---MLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS---MNVMRSRVALVANM 696 (748)
Q Consensus 623 yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~ 696 (748)
||+.+++|+.++. +|.+|..|++++++++||++||.++. ..+++++||+.+++|+.++. .|.+|..|+++.++
T Consensus 299 yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~-~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~ 377 (470)
T PLN02193 299 YNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGC-EVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVG 377 (470)
T ss_pred EECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCC-ccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEEC
Confidence 9999999999874 67889999999999999999998764 36899999999999999865 48899999999999
Q ss_pred CEEEEEeCCCCC---------CCCCeEEEEeCCCCceEecCCC------CCCCcceEEE
Q psy10286 697 GKLWAIGGYDGV---------SNLPTVEVYDPSTDSWAFVAPM------CAHEGGVGVG 740 (748)
Q Consensus 697 ~~l~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~~~------~~~r~~~~~~ 740 (748)
++|||+||.... ...+++++||+.+++|+.++.+ |.+|..|+++
T Consensus 378 ~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~ 436 (470)
T PLN02193 378 KHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTAST 436 (470)
T ss_pred CEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccce
Confidence 999999997531 2346899999999999988753 6778777643
No 9
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.7e-39 Score=343.64 Aligned_cols=261 Identities=22% Similarity=0.332 Sum_probs=220.7
Q ss_pred CCCCceEEccC----CCcccceeEEEEECCEEEEEccCCC--CCCCCeEEEEECCCCeEEEccCCC-CCc---ceeEEEE
Q psy10286 484 PLVGRWQMAEA----MSMLRSRVGVAVMKNRLYAFGGYNG--SERLSTVEEFDPVRRVWNKVSPMC-FKR---SAVGAAA 553 (748)
Q Consensus 484 ~~~~~W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~v~~yd~~t~~W~~~~~~~-~~r---~~~~~~~ 553 (748)
+...+|.++.. +|.+|.+|++++++++|||+||... ....+++++||+.+++|+.+++++ .+| .+|++++
T Consensus 4 ~~~~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~ 83 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVA 83 (341)
T ss_pred ccCCeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEE
Confidence 35667998876 7899999999999999999999853 234578999999999999988764 343 3788999
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC-----CCCCcceEEEEECCEEEEEccCCCCc------ccCeEEE
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM-----QKHRSAGGVIAFDSYVYALGGHDGLS------IFDSVER 622 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-----~~~r~~~~~~~~~~~iyv~GG~~~~~------~~~~~~~ 622 (748)
++++||++||.++...++++++||+.+++|+.++++ |.+|..|++++.+++|||+||.+... .++++++
T Consensus 84 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~ 163 (341)
T PLN02153 84 VGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEA 163 (341)
T ss_pred ECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEE
Confidence 999999999988777788999999999999999877 78999999999999999999985321 3578999
Q ss_pred EECCCCcEEEccCCC---CCCcceeEEEECCEEEEEeccCCC--------ccccEEEEEeCCCCcEEEcc---CCCCCCc
Q psy10286 623 YDPKTDEWTSVKPML---TKRCRLGVAALNNKIYVCGGYDGA--------IFLQSVEMYDPITDEWKMIA---SMNVMRS 688 (748)
Q Consensus 623 yd~~~~~W~~~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~--------~~~~~v~~yd~~~~~W~~~~---~~p~~r~ 688 (748)
||+.+++|+.++.+. .+|..|++++++++|||+||.+.. ...+++++||+.+++|+.+. .+|.+|.
T Consensus 164 yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~ 243 (341)
T PLN02153 164 YNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARS 243 (341)
T ss_pred EECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcc
Confidence 999999999998653 789999999999999999997521 23578999999999999985 4688999
Q ss_pred ceEEEEECCEEEEEeCCCC---------CCCCCeEEEEeCCCCceEecC-----CCCCCCcceEEEEeec
Q psy10286 689 RVALVANMGKLWAIGGYDG---------VSNLPTVEVYDPSTDSWAFVA-----PMCAHEGGVGVGVIPI 744 (748)
Q Consensus 689 ~~~~~~~~~~l~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~-----~~~~~r~~~~~~~~~~ 744 (748)
.|++++++++||||||... ....+++++||+++++|+.++ ++|++|..++++++..
T Consensus 244 ~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~ 313 (341)
T PLN02153 244 VFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYG 313 (341)
T ss_pred eeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCC
Confidence 9999999999999999742 223568999999999999885 6788888777776654
No 10
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=3.1e-39 Score=354.47 Aligned_cols=193 Identities=21% Similarity=0.388 Sum_probs=179.1
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..+.+++|||.+++|..+++|+.+|..+++++++|+||++||.++ .+++++|||.+++|..+++||.+|.+|+++++
T Consensus 285 ~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~ 361 (480)
T PHA02790 285 IHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKPRCNPAVASI 361 (480)
T ss_pred cCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCCCcccEEEEE
Confidence 456799999999999999999999999999999999999999753 26799999999999999999999999999999
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEcc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVK 634 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 634 (748)
+|+||++||.++. .+.+++|||.+++|+.+++|+.+|..+++++++|+||++||. +++|||.+++|+.++
T Consensus 362 ~g~IYviGG~~~~--~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG~--------~e~ydp~~~~W~~~~ 431 (480)
T PHA02790 362 NNVIYVIGGHSET--DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGRN--------AEFYCESSNTWTLID 431 (480)
T ss_pred CCEEEEecCcCCC--CccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECCc--------eEEecCCCCcEeEcC
Confidence 9999999998643 368999999999999999999999999999999999999984 689999999999999
Q ss_pred CCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 635 PMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 635 ~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
+|+.+|..+++++++|+||++||+++....+++++||+.+++|+..
T Consensus 432 ~m~~~r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 432 DPIYPRDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred CCCCCccccEEEEECCEEEEECCcCCCcccceEEEEECCCCeEEec
Confidence 9999999999999999999999988666678999999999999865
No 11
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3.7e-39 Score=341.01 Aligned_cols=271 Identities=20% Similarity=0.315 Sum_probs=221.1
Q ss_pred cCCCccCC---cCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceEEecccccccCCCccceEEEEeCCCCc
Q psy10286 412 TTPRRCNY---VMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGR 488 (748)
Q Consensus 412 ~~~r~~~~---~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~ 488 (748)
+.||.++. ++++||++||....+ ....+++++||+.+++
T Consensus 20 P~pR~~h~~~~~~~~iyv~GG~~~~~--------------------------------------~~~~~~~~~yd~~~~~ 61 (341)
T PLN02153 20 PGPRCSHGIAVVGDKLYSFGGELKPN--------------------------------------EHIDKDLYVFDFNTHT 61 (341)
T ss_pred CCCCCcceEEEECCEEEEECCccCCC--------------------------------------CceeCcEEEEECCCCE
Confidence 45676554 789999999974321 0234689999999999
Q ss_pred eEEccCCC-ccc---ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC-----CCCcceeEEEEECCEEE
Q psy10286 489 WQMAEAMS-MLR---SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM-----CFKRSAVGAAALNDKLY 559 (748)
Q Consensus 489 W~~~~~~~-~~r---~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-----~~~r~~~~~~~~~~~iy 559 (748)
|..+++++ .|| .+|++++++++|||+||..+....+++++||+.+++|+.+++| |.+|..|++++.+++||
T Consensus 62 W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iy 141 (341)
T PLN02153 62 WSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVY 141 (341)
T ss_pred EEEcCccCCCCCCccCceEEEEECCEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEE
Confidence 99988764 343 3788999999999999987766778999999999999999887 88999999999999999
Q ss_pred EEeCCCCC------CCCceEEEEeCCCCeEEEccCCC---CCCcceEEEEECCEEEEEccCCCC--------cccCeEEE
Q psy10286 560 VCGGYDGV------SSLNTVECYEPDKDQWRIVKSMQ---KHRSAGGVIAFDSYVYALGGHDGL--------SIFDSVER 622 (748)
Q Consensus 560 v~GG~~~~------~~~~~~~~yd~~~~~W~~~~~~~---~~r~~~~~~~~~~~iyv~GG~~~~--------~~~~~~~~ 622 (748)
|+||.+.. ..++++++||+.+++|+.++++. .+|.+|++++++++||++||.+.. ...+++++
T Consensus 142 v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~ 221 (341)
T PLN02153 142 VFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQF 221 (341)
T ss_pred EECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEE
Confidence 99998632 14578999999999999998764 789999999999999999996421 12578999
Q ss_pred EECCCCcEEEccC---CCCCCcceeEEEECCEEEEEeccCC---------CccccEEEEEeCCCCcEEEcc-----CCCC
Q psy10286 623 YDPKTDEWTSVKP---MLTKRCRLGVAALNNKIYVCGGYDG---------AIFLQSVEMYDPITDEWKMIA-----SMNV 685 (748)
Q Consensus 623 yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~-----~~p~ 685 (748)
||+.+++|+.++. +|.+|..|++++++++|||+||... ....+++++||+.+++|+.++ ++|.
T Consensus 222 yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr 301 (341)
T PLN02153 222 FDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPR 301 (341)
T ss_pred EEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCC
Confidence 9999999999864 6889999999999999999999732 234679999999999999985 4555
Q ss_pred CCcceEEEEE--CCEEEEEeCCCCC-CCCCeEEEEeCC
Q psy10286 686 MRSRVALVAN--MGKLWAIGGYDGV-SNLPTVEVYDPS 720 (748)
Q Consensus 686 ~r~~~~~~~~--~~~l~v~GG~~~~-~~~~~v~~yd~~ 720 (748)
+|..++++.+ +++||++||.++. ..+.++++|+..
T Consensus 302 ~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~~~ 339 (341)
T PLN02153 302 GWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYAVN 339 (341)
T ss_pred ccccccccccCCcceEEEEcCcCCCCccccceEEEecc
Confidence 5654444443 4589999999764 467899999764
No 12
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=8.1e-38 Score=342.36 Aligned_cols=271 Identities=23% Similarity=0.355 Sum_probs=225.7
Q ss_pred cCCCccCC---cCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceEEecccccccCCCccceEEEEeCCCCc
Q psy10286 412 TTPRRCNY---VMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGR 488 (748)
Q Consensus 412 ~~~r~~~~---~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~ 488 (748)
+.||..+. +++.||++||....+. ...+++|+||+.+++
T Consensus 163 P~pR~~h~~~~~~~~iyv~GG~~~~~~--------------------------------------~~~~~v~~yD~~~~~ 204 (470)
T PLN02193 163 PGLRCSHGIAQVGNKIYSFGGEFTPNQ--------------------------------------PIDKHLYVFDLETRT 204 (470)
T ss_pred CCCccccEEEEECCEEEEECCcCCCCC--------------------------------------CeeCcEEEEECCCCE
Confidence 45676654 7899999999743210 223579999999999
Q ss_pred eEEccC---CCc-ccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC---CCCcceeEEEEECCEEEEE
Q psy10286 489 WQMAEA---MSM-LRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM---CFKRSAVGAAALNDKLYVC 561 (748)
Q Consensus 489 W~~~~~---~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~---~~~r~~~~~~~~~~~iyv~ 561 (748)
|..++. +|. +|.+|++++++++|||+||..+....+++|+||+.+++|+.++++ |.+|+.|++++++++||++
T Consensus 205 W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~ 284 (470)
T PLN02193 205 WSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVF 284 (470)
T ss_pred EEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEE
Confidence 998764 343 357899999999999999988777789999999999999999887 8899999999999999999
Q ss_pred eCCCCCCCCceEEEEeCCCCeEEEccC---CCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCC--
Q psy10286 562 GGYDGVSSLNTVECYEPDKDQWRIVKS---MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM-- 636 (748)
Q Consensus 562 GG~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~-- 636 (748)
||.++...++++++||+.+++|+.+++ +|.+|..|++++++++||++||.++.. .+++++||+.+++|+.++++
T Consensus 285 GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~-~~dv~~yD~~t~~W~~~~~~g~ 363 (470)
T PLN02193 285 GGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCE-VDDVHYYDPVQDKWTQVETFGV 363 (470)
T ss_pred CCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCc-cCceEEEECCCCEEEEeccCCC
Confidence 999877778999999999999999864 678899999999999999999986543 68999999999999999754
Q ss_pred -CCCCcceeEEEECCEEEEEeccCC---------CccccEEEEEeCCCCcEEEccC------CCCCCcceEEE--EE-C-
Q psy10286 637 -LTKRCRLGVAALNNKIYVCGGYDG---------AIFLQSVEMYDPITDEWKMIAS------MNVMRSRVALV--AN-M- 696 (748)
Q Consensus 637 -p~~r~~~~~~~~~~~i~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~~~------~p~~r~~~~~~--~~-~- 696 (748)
|.+|..|++++++++|||+||... ....+++++||+.+++|+.++. .|.+|..++++ .+ +
T Consensus 364 ~P~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~~~~~~~~ 443 (470)
T PLN02193 364 RPSERSVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEEEETPSSRGWTASTTGTIDGK 443 (470)
T ss_pred CCCCcceeEEEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCCCCCCCCCccccceeeEEcCC
Confidence 889999999999999999999753 1245789999999999999864 35677766432 23 3
Q ss_pred CEEEEEeCCCC-CCCCCeEEEEeCCC
Q psy10286 697 GKLWAIGGYDG-VSNLPTVEVYDPST 721 (748)
Q Consensus 697 ~~l~v~GG~~~-~~~~~~v~~yd~~~ 721 (748)
+.|++|||.++ +...+++|+|+..+
T Consensus 444 ~~~~~fGG~~~~~~~~~D~~~~~~~~ 469 (470)
T PLN02193 444 KGLVMHGGKAPTNDRFDDLFFYGIDS 469 (470)
T ss_pred ceEEEEcCCCCccccccceEEEecCC
Confidence 45999999975 45678999998764
No 13
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=3.1e-37 Score=327.81 Aligned_cols=242 Identities=18% Similarity=0.263 Sum_probs=198.5
Q ss_pred ceEEEEeC--CCCceEEccCCC-cccceeEEEEECCEEEEEccCCCCC------CCCeEEEEECCCCeEEEcc-CCCCCc
Q psy10286 477 STVEVFDP--LVGRWQMAEAMS-MLRSRVGVAVMKNRLYAFGGYNGSE------RLSTVEEFDPVRRVWNKVS-PMCFKR 546 (748)
Q Consensus 477 ~~~~~yd~--~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~------~~~~v~~yd~~t~~W~~~~-~~~~~r 546 (748)
+.+++||+ .+++|..+++|| .+|.++++++++++|||+||..... .++++|+|||.+++|+.++ ++|.+|
T Consensus 29 ~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~ 108 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGL 108 (346)
T ss_pred CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcc
Confidence 35788885 678999999999 6899999999999999999985321 4678999999999999997 567788
Q ss_pred ceeEEE-EECCEEEEEeCCCCCC----------------------------------CCceEEEEeCCCCeEEEccCCCC
Q psy10286 547 SAVGAA-ALNDKLYVCGGYDGVS----------------------------------SLNTVECYEPDKDQWRIVKSMQK 591 (748)
Q Consensus 547 ~~~~~~-~~~~~iyv~GG~~~~~----------------------------------~~~~~~~yd~~~~~W~~~~~~~~ 591 (748)
.+++++ +++++||++||.++.. .++++++|||.+++|+.+++||.
T Consensus 109 ~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~ 188 (346)
T TIGR03547 109 LGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPF 188 (346)
T ss_pred cceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCC
Confidence 888777 6899999999986320 24789999999999999999996
Q ss_pred -CCcceEEEEECCEEEEEccCCCCc-ccCeEEEEE--CCCCcEEEccCCCCCC-------cceeEEEECCEEEEEeccCC
Q psy10286 592 -HRSAGGVIAFDSYVYALGGHDGLS-IFDSVERYD--PKTDEWTSVKPMLTKR-------CRLGVAALNNKIYVCGGYDG 660 (748)
Q Consensus 592 -~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd--~~~~~W~~~~~~p~~r-------~~~~~~~~~~~i~v~GG~~~ 660 (748)
+|..+++++++++||++||..... ....++.|| +.+++|+.+++||.+| ..|++++++++|||+||.+.
T Consensus 189 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~ 268 (346)
T TIGR03547 189 LGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANF 268 (346)
T ss_pred CcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCC
Confidence 689999999999999999985433 234565555 5778999999998765 24557889999999999752
Q ss_pred Cc-----------------cccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCC-CCCCeEEEEe
Q psy10286 661 AI-----------------FLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV-SNLPTVEVYD 718 (748)
Q Consensus 661 ~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~v~~yd 718 (748)
.. ....+++||+++++|+.+++||.+|..+++++++++|||+||.+.. ...++|+.|-
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 269 PGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred CCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCCCCCEeeeEEEEE
Confidence 11 1247899999999999999999999999988999999999998754 3456777653
No 14
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.8e-37 Score=324.36 Aligned_cols=232 Identities=18% Similarity=0.308 Sum_probs=197.0
Q ss_pred cceEEEEe-CCC-CceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeE----EEccCCCCCccee
Q psy10286 476 LSTVEVFD-PLV-GRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVW----NKVSPMCFKRSAV 549 (748)
Q Consensus 476 ~~~~~~yd-~~~-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W----~~~~~~~~~r~~~ 549 (748)
.++++.|+ +.. .+|..+++||.+|..+++++++++||++||.++....+++++||+.+++| +.+++||.+|..|
T Consensus 38 ~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~ 117 (323)
T TIGR03548 38 YKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENG 117 (323)
T ss_pred eeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCc
Confidence 46778775 332 37999999999999888899999999999988777788999999999988 7789999999999
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC-CCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ-KHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
++++++++||++||......++++++||+.+++|+.++++| .+|..|++++++++||++||.++.. ..++++||+.++
T Consensus 118 ~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~ 196 (323)
T TIGR03548 118 SACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKN 196 (323)
T ss_pred eEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCcc-ccceEEEecCCC
Confidence 99999999999999865556899999999999999999988 4799999999999999999986543 457899999999
Q ss_pred cEEEccCCC---CC--CcceeE-EEECCEEEEEeccCCCc--------------------------------cccEEEEE
Q psy10286 629 EWTSVKPML---TK--RCRLGV-AALNNKIYVCGGYDGAI--------------------------------FLQSVEMY 670 (748)
Q Consensus 629 ~W~~~~~~p---~~--r~~~~~-~~~~~~i~v~GG~~~~~--------------------------------~~~~v~~y 670 (748)
+|+.+++++ .+ +..+++ +..+++|||+||.++.. ..+++++|
T Consensus 197 ~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~y 276 (323)
T TIGR03548 197 QWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIY 276 (323)
T ss_pred eeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHHhCCCccccCcCceEEEE
Confidence 999998753 23 333443 44479999999986431 13689999
Q ss_pred eCCCCcEEEccCCC-CCCcceEEEEECCEEEEEeCCCCC
Q psy10286 671 DPITDEWKMIASMN-VMRSRVALVANMGKLWAIGGYDGV 708 (748)
Q Consensus 671 d~~~~~W~~~~~~p-~~r~~~~~~~~~~~l~v~GG~~~~ 708 (748)
|+.+++|+.++++| .+|.+++++.++++||++||....
T Consensus 277 d~~~~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~p 315 (323)
T TIGR03548 277 NVRTGKWKSIGNSPFFARCGAALLLTGNNIFSINGELKP 315 (323)
T ss_pred ECCCCeeeEcccccccccCchheEEECCEEEEEeccccC
Confidence 99999999999887 589999999999999999997543
No 15
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=2.4e-36 Score=322.79 Aligned_cols=249 Identities=18% Similarity=0.255 Sum_probs=204.7
Q ss_pred eEEEEeCC--CCceEEccCCC-cccceeEEEEECCEEEEEccCCC------CCCCCeEEEEECCCCeEEEccC-CCCCcc
Q psy10286 478 TVEVFDPL--VGRWQMAEAMS-MLRSRVGVAVMKNRLYAFGGYNG------SERLSTVEEFDPVRRVWNKVSP-MCFKRS 547 (748)
Q Consensus 478 ~~~~yd~~--~~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~-~~~~r~ 547 (748)
.++.||+. +++|..++++| .+|.++++++++++|||+||... ....+++|+||+.+++|+.+++ +|.++.
T Consensus 51 ~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~ 130 (376)
T PRK14131 51 SWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLA 130 (376)
T ss_pred eEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCccc
Confidence 46788876 47899999998 58999999999999999999864 1236789999999999999985 477788
Q ss_pred eeEEEE-ECCEEEEEeCCCCC----------------------------------CCCceEEEEeCCCCeEEEccCCCC-
Q psy10286 548 AVGAAA-LNDKLYVCGGYDGV----------------------------------SSLNTVECYEPDKDQWRIVKSMQK- 591 (748)
Q Consensus 548 ~~~~~~-~~~~iyv~GG~~~~----------------------------------~~~~~~~~yd~~~~~W~~~~~~~~- 591 (748)
+|++++ .+++||++||.+.. ...+++++||+.+++|+.++++|.
T Consensus 131 ~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~ 210 (376)
T PRK14131 131 GHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFL 210 (376)
T ss_pred ceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCC
Confidence 888777 79999999997531 024789999999999999999996
Q ss_pred CCcceEEEEECCEEEEEccCCCCc-ccCeEE--EEECCCCcEEEccCCCCCCcc--------eeEEEECCEEEEEeccCC
Q psy10286 592 HRSAGGVIAFDSYVYALGGHDGLS-IFDSVE--RYDPKTDEWTSVKPMLTKRCR--------LGVAALNNKIYVCGGYDG 660 (748)
Q Consensus 592 ~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~--~yd~~~~~W~~~~~~p~~r~~--------~~~~~~~~~i~v~GG~~~ 660 (748)
+|..++++.++++||++||..... ....++ .||+++++|+.+++||.+|.. +.+++++++|||+||.+.
T Consensus 211 ~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~ 290 (376)
T PRK14131 211 GTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANF 290 (376)
T ss_pred CCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCC
Confidence 788899999999999999974322 233444 567899999999999887642 335678999999999753
Q ss_pred Cc-----------------cccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCC-CCCCeEEEEeCCCC
Q psy10286 661 AI-----------------FLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV-SNLPTVEVYDPSTD 722 (748)
Q Consensus 661 ~~-----------------~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~-~~~~~v~~yd~~~~ 722 (748)
.. ....+++||+.+++|+.++.+|.+|.+++++.++++|||+||...+ ...++|++|+++.+
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~~~~~~~~~v~~~~~~~~ 370 (376)
T PRK14131 291 PGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGETAGGKAVSDVTLLSWDGK 370 (376)
T ss_pred CCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCCCCCcEeeeEEEEEEcCC
Confidence 21 1235789999999999999999999999999999999999998653 46779999999988
Q ss_pred ceEe
Q psy10286 723 SWAF 726 (748)
Q Consensus 723 ~W~~ 726 (748)
.|..
T Consensus 371 ~~~~ 374 (376)
T PRK14131 371 KLTV 374 (376)
T ss_pred EEEE
Confidence 8864
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=2.3e-36 Score=321.08 Aligned_cols=247 Identities=19% Similarity=0.230 Sum_probs=205.0
Q ss_pred ccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEEC--CCCeEEEccCCC-CCcceeEEEEECCEEEEEeCCCCC-
Q psy10286 492 AEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP--VRRVWNKVSPMC-FKRSAVGAAALNDKLYVCGGYDGV- 567 (748)
Q Consensus 492 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~- 567 (748)
+++||.+|..+++++++++|||+||... +.+++||+ .+++|..+++|| .+|..+++++++++|||+||....
T Consensus 1 ~~~lp~~~~~~~~~~~~~~vyv~GG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~ 76 (346)
T TIGR03547 1 LPDLPVGFKNGTGAIIGDKVYVGLGSAG----TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKAN 76 (346)
T ss_pred CCCCCccccCceEEEECCEEEEEccccC----CeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCC
Confidence 4688999999888899999999999632 67999996 678999999999 689999999999999999998532
Q ss_pred -----CCCceEEEEeCCCCeEEEcc-CCCCCCcceEEE-EECCEEEEEccCCCCc-------------------------
Q psy10286 568 -----SSLNTVECYEPDKDQWRIVK-SMQKHRSAGGVI-AFDSYVYALGGHDGLS------------------------- 615 (748)
Q Consensus 568 -----~~~~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~-~~~~~iyv~GG~~~~~------------------------- 615 (748)
..++++++|||.+++|+.++ ++|.+|.+++++ +++++||++||.++..
T Consensus 77 ~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (346)
T TIGR03547 77 SEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAY 156 (346)
T ss_pred CCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHH
Confidence 24789999999999999997 466777777776 7899999999985321
Q ss_pred ---------ccCeEEEEECCCCcEEEccCCCC-CCcceeEEEECCEEEEEeccCCCc-cccEEEEEe--CCCCcEEEccC
Q psy10286 616 ---------IFDSVERYDPKTDEWTSVKPMLT-KRCRLGVAALNNKIYVCGGYDGAI-FLQSVEMYD--PITDEWKMIAS 682 (748)
Q Consensus 616 ---------~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd--~~~~~W~~~~~ 682 (748)
..+++++|||.+++|+.+++||. +|..+++++++++|||+||..... ...+++.|| +++++|+.+++
T Consensus 157 ~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~ 236 (346)
T TIGR03547 157 FSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP 236 (346)
T ss_pred hCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC
Confidence 13789999999999999999996 688999999999999999976433 234566565 57789999999
Q ss_pred CCCCC-------cceEEEEECCEEEEEeCCCCCC-----------------CCCeEEEEeCCCCceEecCCCCCCCcceE
Q psy10286 683 MNVMR-------SRVALVANMGKLWAIGGYDGVS-----------------NLPTVEVYDPSTDSWAFVAPMCAHEGGVG 738 (748)
Q Consensus 683 ~p~~r-------~~~~~~~~~~~l~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~~~~r~~~~ 738 (748)
||.+| .+|.+++++++|||+||.+... ...++++||+++++|+.+++||.+|..++
T Consensus 237 m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~~~~~~ 316 (346)
T TIGR03547 237 LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGKLPQGLAYGV 316 (346)
T ss_pred CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCCCCCCceeeE
Confidence 98765 3455778999999999985311 12468999999999999999999999888
Q ss_pred EEEe
Q psy10286 739 VGVI 742 (748)
Q Consensus 739 ~~~~ 742 (748)
++++
T Consensus 317 ~~~~ 320 (346)
T TIGR03547 317 SVSW 320 (346)
T ss_pred EEEc
Confidence 7665
No 17
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=1.3e-35 Score=311.79 Aligned_cols=245 Identities=16% Similarity=0.230 Sum_probs=205.4
Q ss_pred ccceeEEEEECCEEEEEccCCCC----------CCCCeEEEEE-CCC-CeEEEccCCCCCcceeEEEEECCEEEEEeCCC
Q psy10286 498 LRSRVGVAVMKNRLYAFGGYNGS----------ERLSTVEEFD-PVR-RVWNKVSPMCFKRSAVGAAALNDKLYVCGGYD 565 (748)
Q Consensus 498 ~r~~~~~~~~~~~iyv~GG~~~~----------~~~~~v~~yd-~~t-~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~ 565 (748)
.++++.++++++.|||+||.+.. ...+++++|+ +.. .+|..+++||.+|.++++++++++||++||.+
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~~~lyviGG~~ 82 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVENGIYYIGGSN 82 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEECCEEEEEcCCC
Confidence 46788999999999999997632 1345788885 332 37999999999999999999999999999998
Q ss_pred CCCCCceEEEEeCCCCeE----EEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCC-CCC
Q psy10286 566 GVSSLNTVECYEPDKDQW----RIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPML-TKR 640 (748)
Q Consensus 566 ~~~~~~~~~~yd~~~~~W----~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r 640 (748)
+...++++++||+.+++| +.++++|.+|..|++++++++||++||..+....+++++||+.+++|+.++++| .+|
T Consensus 83 ~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r 162 (323)
T TIGR03548 83 SSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPR 162 (323)
T ss_pred CCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCC
Confidence 777789999999999998 788999999999999999999999999865556789999999999999999888 479
Q ss_pred cceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCC---CC--CcceE-EEEECCEEEEEeCCCCCC-----
Q psy10286 641 CRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN---VM--RSRVA-LVANMGKLWAIGGYDGVS----- 709 (748)
Q Consensus 641 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p---~~--r~~~~-~~~~~~~l~v~GG~~~~~----- 709 (748)
..+++++++++|||+||.++.. ..++++||+++++|+.+++++ .+ +..++ ++..+++|||+||.++..
T Consensus 163 ~~~~~~~~~~~iYv~GG~~~~~-~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~ 241 (323)
T TIGR03548 163 VQPVCVKLQNELYVFGGGSNIA-YTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKINESLLLCIGGFNKDVYNDAV 241 (323)
T ss_pred CcceEEEECCEEEEEcCCCCcc-ccceEEEecCCCeeEECCCCCCCCCceeccceeEEEECCCEEEEECCcCHHHHHHHH
Confidence 9999999999999999986543 457899999999999998753 23 33444 444579999999987421
Q ss_pred ---------------------------CCCeEEEEeCCCCceEecCCCC-CCCcceEEEEee
Q psy10286 710 ---------------------------NLPTVEVYDPSTDSWAFVAPMC-AHEGGVGVGVIP 743 (748)
Q Consensus 710 ---------------------------~~~~v~~yd~~~~~W~~~~~~~-~~r~~~~~~~~~ 743 (748)
..+++++||+.+++|+.++++| .+|.+++++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~ 303 (323)
T TIGR03548 242 IDLATMKDESLKGYKKEYFLKPPEWYNWNRKILIYNVRTGKWKSIGNSPFFARCGAALLLTG 303 (323)
T ss_pred hhhhhccchhhhhhHHHHhCCCccccCcCceEEEEECCCCeeeEcccccccccCchheEEEC
Confidence 1367999999999999999988 589999887763
No 18
>KOG4693|consensus
Probab=100.00 E-value=2.4e-35 Score=272.99 Aligned_cols=230 Identities=24% Similarity=0.430 Sum_probs=196.4
Q ss_pred eEEEEeCCCCceEEccC-------------CCcccceeEEEEECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEc---c
Q psy10286 478 TVEVFDPLVGRWQMAEA-------------MSMLRSRVGVAVMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKV---S 540 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~-------------~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~---~ 540 (748)
++..++..+-+|+++++ .|.-|++|+++.+++++|+.||++. .+.-+.++.|||.+++|.+. .
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G 124 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEG 124 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCccCcccccceeeeeccccccccccceee
Confidence 56666666666666654 3556999999999999999999986 45667899999999999875 4
Q ss_pred CCCCCcceeEEEEECCEEEEEeCCCC--CCCCceEEEEeCCCCeEEEcc---CCCCCCcceEEEEECCEEEEEccCCCC-
Q psy10286 541 PMCFKRSAVGAAALNDKLYVCGGYDG--VSSLNTVECYEPDKDQWRIVK---SMQKHRSAGGVIAFDSYVYALGGHDGL- 614 (748)
Q Consensus 541 ~~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~- 614 (748)
-+|.+|.+|+++++++.+|||||+.. ....+++..+|..|-+|+.+. ..|.-|..|+++++++.+|||||..+.
T Consensus 125 ~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~ 204 (392)
T KOG4693|consen 125 FVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDES 204 (392)
T ss_pred ecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccC
Confidence 58999999999999999999999864 345789999999999999985 344558889999999999999998432
Q ss_pred --------cccCeEEEEECCCCcEEEcc---CCCCCCcceeEEEECCEEEEEeccCCC--ccccEEEEEeCCCCcEEEc-
Q psy10286 615 --------SIFDSVERYDPKTDEWTSVK---PMLTKRCRLGVAALNNKIYVCGGYDGA--IFLQSVEMYDPITDEWKMI- 680 (748)
Q Consensus 615 --------~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~--~~~~~v~~yd~~~~~W~~~- 680 (748)
...+.+..+|.+|..|...+ ..|.+|..|++.++++++|+|||+++. ...+++|+|||++..|..+
T Consensus 205 gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~ 284 (392)
T KOG4693|consen 205 GPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVIS 284 (392)
T ss_pred CCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeee
Confidence 23567889999999999876 367889999999999999999999885 5689999999999999998
Q ss_pred --cCCCCCCcceEEEEECCEEEEEeCCCC
Q psy10286 681 --ASMNVMRSRVALVANMGKLWAIGGYDG 707 (748)
Q Consensus 681 --~~~p~~r~~~~~~~~~~~l~v~GG~~~ 707 (748)
+.-|.+|..+++++.++++|+|||...
T Consensus 285 ~~Gk~P~aRRRqC~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 285 VRGKYPSARRRQCSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ccCCCCCcccceeEEEECCEEEEecCCCC
Confidence 568899999999999999999999653
No 19
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=1.3e-34 Score=309.39 Aligned_cols=252 Identities=17% Similarity=0.212 Sum_probs=206.9
Q ss_pred ceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECC--CCeEEEccCCC-CCcceeEEEEECCEEEEEeCC
Q psy10286 488 RWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPV--RRVWNKVSPMC-FKRSAVGAAALNDKLYVCGGY 564 (748)
Q Consensus 488 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~ 564 (748)
.++.+++||.+|..+++++++++|||+||... +.+++||+. +++|..++++| .+|.++++++++++|||+||.
T Consensus 18 ~~~~l~~lP~~~~~~~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~GG~ 93 (376)
T PRK14131 18 NAEQLPDLPVPFKNGTGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFGGI 93 (376)
T ss_pred ecccCCCCCcCccCCeEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEcCC
Confidence 47788999999988899999999999999643 458999986 47899999998 589999999999999999997
Q ss_pred CC------CCCCceEEEEeCCCCeEEEccC-CCCCCcceEEEE-ECCEEEEEccCCCC----------------------
Q psy10286 565 DG------VSSLNTVECYEPDKDQWRIVKS-MQKHRSAGGVIA-FDSYVYALGGHDGL---------------------- 614 (748)
Q Consensus 565 ~~------~~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~-~~~~iyv~GG~~~~---------------------- 614 (748)
.. ...++++++||+.+++|+.+++ +|.++.+|++++ .+++||++||.+..
T Consensus 94 ~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i 173 (376)
T PRK14131 94 GKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKI 173 (376)
T ss_pred CCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhh
Confidence 64 1246899999999999999985 467777788777 89999999997531
Q ss_pred ------------cccCeEEEEECCCCcEEEccCCCC-CCcceeEEEECCEEEEEeccCCCc-cccEEE--EEeCCCCcEE
Q psy10286 615 ------------SIFDSVERYDPKTDEWTSVKPMLT-KRCRLGVAALNNKIYVCGGYDGAI-FLQSVE--MYDPITDEWK 678 (748)
Q Consensus 615 ------------~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~--~yd~~~~~W~ 678 (748)
...+++++||+.+++|+.++++|. +|..++++.++++|||+||..... ...+++ .||+++++|.
T Consensus 174 ~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~ 253 (376)
T PRK14131 174 NDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQ 253 (376)
T ss_pred HHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCccee
Confidence 024789999999999999999996 788899999999999999974332 234444 5678999999
Q ss_pred EccCCCCCCcc--------eEEEEECCEEEEEeCCCCCC-----------------CCCeEEEEeCCCCceEecCCCCCC
Q psy10286 679 MIASMNVMRSR--------VALVANMGKLWAIGGYDGVS-----------------NLPTVEVYDPSTDSWAFVAPMCAH 733 (748)
Q Consensus 679 ~~~~~p~~r~~--------~~~~~~~~~l~v~GG~~~~~-----------------~~~~v~~yd~~~~~W~~~~~~~~~ 733 (748)
.++++|.+|.+ +.+++++++|||+||.+... ....+++||+++++|+.+++||.+
T Consensus 254 ~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~ 333 (376)
T PRK14131 254 KLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQG 333 (376)
T ss_pred ecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCcCCCC
Confidence 99999887642 33567899999999976321 113578999999999999999999
Q ss_pred CcceEEEEee
Q psy10286 734 EGGVGVGVIP 743 (748)
Q Consensus 734 r~~~~~~~~~ 743 (748)
|.+++++++.
T Consensus 334 r~~~~av~~~ 343 (376)
T PRK14131 334 LAYGVSVSWN 343 (376)
T ss_pred ccceEEEEeC
Confidence 9999887663
No 20
>KOG4693|consensus
Probab=100.00 E-value=7e-34 Score=263.27 Aligned_cols=255 Identities=19% Similarity=0.368 Sum_probs=214.9
Q ss_pred ceEEccCCCcccceeEEEEECCEEEEEccCCCC-----CCCCeEEEEECCCCeEEEccC-------------CCCCccee
Q psy10286 488 RWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGS-----ERLSTVEEFDPVRRVWNKVSP-------------MCFKRSAV 549 (748)
Q Consensus 488 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~-----~~~~~v~~yd~~t~~W~~~~~-------------~~~~r~~~ 549 (748)
+|+.--.--..|-.|+++.++.+||-|||+-.+ ...-+|.++|..+-+|+.+++ .|..|++|
T Consensus 3 ~WTVHLeGGPrRVNHAavaVG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGH 82 (392)
T KOG4693|consen 3 TWTVHLEGGPRRVNHAAVAVGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGH 82 (392)
T ss_pred eEEEEecCCcccccceeeeecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCc
Confidence 355433334568899999999999999998522 234579999999999999865 46789999
Q ss_pred EEEEECCEEEEEeCCCC-CCCCceEEEEeCCCCeEEEc---cCCCCCCcceEEEEECCEEEEEccCCC--CcccCeEEEE
Q psy10286 550 GAAALNDKLYVCGGYDG-VSSLNTVECYEPDKDQWRIV---KSMQKHRSAGGVIAFDSYVYALGGHDG--LSIFDSVERY 623 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~y 623 (748)
+.+.+++++|+.||.+. .+.-+.+++|||+++.|... .-+|.+|.+|++++.++.+|||||+.. ....++++++
T Consensus 83 tvV~y~d~~yvWGGRND~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~l 162 (392)
T KOG4693|consen 83 TVVEYQDKAYVWGGRNDDEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVL 162 (392)
T ss_pred eEEEEcceEEEEcCccCcccccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeE
Confidence 99999999999999986 55678999999999999775 468999999999999999999999843 3468899999
Q ss_pred ECCCCcEEEcc---CCCCCCcceeEEEECCEEEEEeccCCC---------ccccEEEEEeCCCCcEEEcc---CCCCCCc
Q psy10286 624 DPKTDEWTSVK---PMLTKRCRLGVAALNNKIYVCGGYDGA---------IFLQSVEMYDPITDEWKMIA---SMNVMRS 688 (748)
Q Consensus 624 d~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~---------~~~~~v~~yd~~~~~W~~~~---~~p~~r~ 688 (748)
|..|.+|+.+. ..|.-|..|+++++++.+|||||+... .+-+.+..+|.++..|...+ ..|.+|.
T Consensus 163 d~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRR 242 (392)
T KOG4693|consen 163 DFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRR 242 (392)
T ss_pred eccceeeeehhccCCCchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCccc
Confidence 99999999986 345568889999999999999997543 24568899999999999874 3678899
Q ss_pred ceEEEEECCEEEEEeCCCCC--CCCCeEEEEeCCCCceEecC---CCCCCCcceEEEEe
Q psy10286 689 RVALVANMGKLWAIGGYDGV--SNLPTVEVYDPSTDSWAFVA---PMCAHEGGVGVGVI 742 (748)
Q Consensus 689 ~~~~~~~~~~l~v~GG~~~~--~~~~~v~~yd~~~~~W~~~~---~~~~~r~~~~~~~~ 742 (748)
.|++.++++++|+|||+++. ...+++|+|||.+..|+.+. .-|.+|..++||+.
T Consensus 243 SHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~ 301 (392)
T KOG4693|consen 243 SHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVS 301 (392)
T ss_pred ccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEE
Confidence 99999999999999999874 35579999999999999874 48889999988875
No 21
>KOG0379|consensus
Probab=99.97 E-value=1.3e-29 Score=276.48 Aligned_cols=251 Identities=24% Similarity=0.419 Sum_probs=221.0
Q ss_pred cCCCcccceeEEEEECCEEEEEccCCCCCCCCe--EEEEECCCCeEEEc---cCCCCCcceeEEEEECCEEEEEeCCCC-
Q psy10286 493 EAMSMLRSRVGVAVMKNRLYAFGGYNGSERLST--VEEFDPVRRVWNKV---SPMCFKRSAVGAAALNDKLYVCGGYDG- 566 (748)
Q Consensus 493 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~--v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~- 566 (748)
...|.+|.+|+++.+++++||+||......... +|++|..+..|... ...|.+|++|++++++++||+|||.+.
T Consensus 55 ~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~ 134 (482)
T KOG0379|consen 55 GVGPIPRAGHSAVLIGNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKK 134 (482)
T ss_pred CCCcchhhccceeEECCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCC
Confidence 456788999999999999999999876555444 99999999999875 357899999999999999999999884
Q ss_pred CCCCceEEEEeCCCCeEEEcc---CCCCCCcceEEEEECCEEEEEccCCCCc-ccCeEEEEECCCCcEEEcc---CCCCC
Q psy10286 567 VSSLNTVECYEPDKDQWRIVK---SMQKHRSAGGVIAFDSYVYALGGHDGLS-IFDSVERYDPKTDEWTSVK---PMLTK 639 (748)
Q Consensus 567 ~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~ 639 (748)
...+++++.||+.+++|..+. ..|.+|.+|+++++++++|||||.+... ..+++|+||+++.+|.++. +.|.|
T Consensus 135 ~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~p 214 (482)
T KOG0379|consen 135 YRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSP 214 (482)
T ss_pred CCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCC
Confidence 567899999999999999885 4688999999999999999999997766 7899999999999999985 67889
Q ss_pred CcceeEEEECCEEEEEeccC-CCccccEEEEEeCCCCcEEEc---cCCCCCCcceEEEEECCEEEEEeCCCCC--CCCCe
Q psy10286 640 RCRLGVAALNNKIYVCGGYD-GAIFLQSVEMYDPITDEWKMI---ASMNVMRSRVALVANMGKLWAIGGYDGV--SNLPT 713 (748)
Q Consensus 640 r~~~~~~~~~~~i~v~GG~~-~~~~~~~v~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~~~l~v~GG~~~~--~~~~~ 713 (748)
|.+|++++++++++++||.+ +..+++++|++|..+.+|..+ +..|.+|.+|..+..+++++++||.... ....+
T Consensus 215 R~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~ 294 (482)
T KOG0379|consen 215 RYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGD 294 (482)
T ss_pred CCCceEEEECCeEEEEeccccCCceecceEeeecccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccc
Confidence 99999999999999999988 677899999999999999976 5689999999999999999999998764 25789
Q ss_pred EEEEeCCCCceEecCCC----CCCCcceEEEEee
Q psy10286 714 VEVYDPSTDSWAFVAPM----CAHEGGVGVGVIP 743 (748)
Q Consensus 714 v~~yd~~~~~W~~~~~~----~~~r~~~~~~~~~ 743 (748)
++.||.+++.|..+... |.+|..++.+.+.
T Consensus 295 ~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 328 (482)
T KOG0379|consen 295 LYGLDLETLVWSKVESVGVVRPSPRLGHAAELID 328 (482)
T ss_pred cccccccccceeeeeccccccccccccccceeec
Confidence 99999999999987554 4677777766554
No 22
>KOG4350|consensus
Probab=99.97 E-value=9.7e-31 Score=255.28 Aligned_cols=232 Identities=23% Similarity=0.384 Sum_probs=194.3
Q ss_pred cchhhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcccc
Q psy10286 53 QQLDLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIP 132 (748)
Q Consensus 53 ~~~~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 132 (748)
........+.+.+.+++-+..++||+|++++++|+|||+|||+||.|||+|+.+++.|+.+..|++
T Consensus 23 ~~~~i~~~fS~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es~q~~ipL-------------- 88 (620)
T KOG4350|consen 23 ESAAISNNFSQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQESHQQLIPL-------------- 88 (620)
T ss_pred hhhhhccchhHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhhhhccccc--------------
Confidence 344566777889999999999999999999999999999999999999999999999998888877
Q ss_pred ccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCccc
Q psy10286 133 YFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVL 212 (748)
Q Consensus 133 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl 212 (748)
++...++|+.+|+|||||++.+....
T Consensus 89 --------------------q~t~~eAF~~lLrYiYtg~~~l~~~~---------------------------------- 114 (620)
T KOG4350|consen 89 --------------------QETNSEAFRALLRYIYTGKIDLAGVE---------------------------------- 114 (620)
T ss_pred --------------------ccccHHHHHHHHHHHhhcceecccch----------------------------------
Confidence 78889999999999999999865431
Q ss_pred chhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHH
Q psy10286 213 DYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEA 292 (748)
Q Consensus 213 ~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~ 292 (748)
.+-..+.+..|..|++.+|.....+||++.|..+|++.++..|..|+..+|...
T Consensus 115 --------------------------ed~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~ 168 (620)
T KOG4350|consen 115 --------------------------EDILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDY 168 (620)
T ss_pred --------------------------HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHH
Confidence 111234445555555555555566666666777788888888888888889999
Q ss_pred HHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCCHHHHHhhccCCCCChHHHH
Q psy10286 293 ADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPSLPRLLAAVRLPLLSPHYLA 372 (748)
Q Consensus 293 ~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~~~~l~~~vR~~~l~~~~l~ 372 (748)
|+.|+.+|..+++.++.|..|+.+.|.+++.+|.+. ..|.++|.|+.+|.++|.+ .....+++.+|+|+|+...|.
T Consensus 169 C~mfmDrnA~~lL~~~sFn~LSk~sL~e~l~RDsFf-ApE~~IFlAv~~W~~~Nsk---e~~k~~~~~VRLPLm~lteLL 244 (620)
T KOG4350|consen 169 CMMFMDRNADQLLEDPSFNRLSKDSLKELLARDSFF-APELKIFLAVRSWHQNNSK---EASKVLLELVRLPLMTLTELL 244 (620)
T ss_pred HHHHHhcCHHhhhcCcchhhhhHHHHHHHHhhhccc-chHHHHHHHHHHHHhcCch---hhHHHHHHHHhhhhccHHHHH
Confidence 999999999999999999999999999999999985 5899999999999998863 455778999999999999999
Q ss_pred hhhccchhhc
Q psy10286 373 DRVATEALIR 382 (748)
Q Consensus 373 ~~~~~~~l~~ 382 (748)
..+....++.
T Consensus 245 nvVRPsGlls 254 (620)
T KOG4350|consen 245 NVVRPSGLLS 254 (620)
T ss_pred hccCcccCcC
Confidence 8887766653
No 23
>KOG0379|consensus
Probab=99.96 E-value=2.5e-27 Score=258.41 Aligned_cols=252 Identities=21% Similarity=0.268 Sum_probs=207.6
Q ss_pred eEEEEeCCCCceEEcc---CCCcccceeEEEEECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEcc---CCCCCcceeE
Q psy10286 478 TVEVFDPLVGRWQMAE---AMSMLRSRVGVAVMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKVS---PMCFKRSAVG 550 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~---~~~~~r~~~~ 550 (748)
++|.+|..+..|.... ..|.+|.+|+++.++++||+|||.+. ....++++.||+.|++|..+. .+|.+|.+|+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs 168 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHS 168 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccce
Confidence 6999999999997764 46789999999999999999999984 566789999999999999874 4689999999
Q ss_pred EEEECCEEEEEeCCCCCC-CCceEEEEeCCCCeEEEcc---CCCCCCcceEEEEECCEEEEEccCC-CCcccCeEEEEEC
Q psy10286 551 AAALNDKLYVCGGYDGVS-SLNTVECYEPDKDQWRIVK---SMQKHRSAGGVIAFDSYVYALGGHD-GLSIFDSVERYDP 625 (748)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~-~~~~~~~~~~yd~ 625 (748)
++++++++|||||.+... .++++++||+.+.+|.++. +.|.||.+|+++++++++++|||.+ +...++++|.+|.
T Consensus 169 ~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~~~ldl 248 (482)
T KOG0379|consen 169 ATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDVHILDL 248 (482)
T ss_pred EEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecceEeeec
Confidence 999999999999998655 8999999999999999884 6788999999999999999999997 6778999999999
Q ss_pred CCCcEEEcc---CCCCCCcceeEEEECCEEEEEeccCCC--ccccEEEEEeCCCCcEEEccC----CCCCCcceEEEEEC
Q psy10286 626 KTDEWTSVK---PMLTKRCRLGVAALNNKIYVCGGYDGA--IFLQSVEMYDPITDEWKMIAS----MNVMRSRVALVANM 696 (748)
Q Consensus 626 ~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~~~--~~~~~v~~yd~~~~~W~~~~~----~p~~r~~~~~~~~~ 696 (748)
.+.+|..+. ..|.+|..|.++..+++++++||.... ..+.++|.||..+..|..+.. .|.+|..+..+..+
T Consensus 249 ~~~~W~~~~~~g~~p~~R~~h~~~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~ 328 (482)
T KOG0379|consen 249 STWEWKLLPTGGDLPSPRSGHSLTVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVGVVRPSPRLGHAAELID 328 (482)
T ss_pred ccceeeeccccCCCCCCcceeeeEEECCEEEEEcCCcccccccccccccccccccceeeeeccccccccccccccceeec
Confidence 999999765 578999999999999999999998764 368899999999999999843 46778888777664
Q ss_pred C----EEEEEeCCCC-CCCCCeEEEE----eCCCCceEecCC
Q psy10286 697 G----KLWAIGGYDG-VSNLPTVEVY----DPSTDSWAFVAP 729 (748)
Q Consensus 697 ~----~l~v~GG~~~-~~~~~~v~~y----d~~~~~W~~~~~ 729 (748)
. ...++||... ....++++.. ...++.|...+.
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 370 (482)
T KOG0379|consen 329 ELGKDGLGILGGNQILGERLADVFSLQIKLLSRKNEVQEPGT 370 (482)
T ss_pred cCCccceeeecCccccccchhhcccccccccccCCccccccc
Confidence 3 3444444221 1223344432 344566665543
No 24
>KOG4152|consensus
Probab=99.96 E-value=1e-27 Score=240.71 Aligned_cols=257 Identities=20% Similarity=0.335 Sum_probs=210.9
Q ss_pred CCccCCCccCC---cCcEEEEEcCccCCCCCCcceEeecCCCCceeecccccccceEEecccccccCCCccceEEEEeCC
Q psy10286 409 GEKTTPRRCNY---VMGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPL 485 (748)
Q Consensus 409 ~~~~~~r~~~~---~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~ 485 (748)
++.++||.+|- +.+.|++|||-+. ...++++.||..
T Consensus 27 GPvPrpRHGHRAVaikELiviFGGGNE-----------------------------------------GiiDELHvYNTa 65 (830)
T KOG4152|consen 27 GPVPRPRHGHRAVAIKELIVIFGGGNE-----------------------------------------GIIDELHVYNTA 65 (830)
T ss_pred CCCCCccccchheeeeeeEEEecCCcc-----------------------------------------cchhhhhhhccc
Confidence 34566676653 7889999999533 456889999999
Q ss_pred CCceEEc---cCCCcccceeEEEEECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEcc-------CCCCCcceeEEEEE
Q psy10286 486 VGRWQMA---EAMSMLRSRVGVAVMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKVS-------PMCFKRSAVGAAAL 554 (748)
Q Consensus 486 ~~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~-------~~~~~r~~~~~~~~ 554 (748)
+++|..- ++.|.+-..|+.+..+.+||+|||... +.+.++++.+......|+++. ++|.||-+|+...+
T Consensus 66 tnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~ 145 (830)
T KOG4152|consen 66 TNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLV 145 (830)
T ss_pred cceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEe
Confidence 9999754 578888889999999999999999863 456777776666666777762 47899999999999
Q ss_pred CCEEEEEeCCCC---------CCCCceEEEEeCCCC----eEEEc---cCCCCCCcceEEEEE------CCEEEEEccCC
Q psy10286 555 NDKLYVCGGYDG---------VSSLNTVECYEPDKD----QWRIV---KSMQKHRSAGGVIAF------DSYVYALGGHD 612 (748)
Q Consensus 555 ~~~iyv~GG~~~---------~~~~~~~~~yd~~~~----~W~~~---~~~~~~r~~~~~~~~------~~~iyv~GG~~ 612 (748)
+++-|+|||..+ ..++++++..+...+ .|... ..+|.+|..|+++.+ ..++||+||.+
T Consensus 146 gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~ 225 (830)
T KOG4152|consen 146 GNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMS 225 (830)
T ss_pred ccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccc
Confidence 999999999642 236899999987754 38765 578999999999998 34899999997
Q ss_pred CCcccCeEEEEECCCCcEEEcc---CCCCCCcceeEEEECCEEEEEeccC-----CC---------ccccEEEEEeCCCC
Q psy10286 613 GLSIFDSVERYDPKTDEWTSVK---PMLTKRCRLGVAALNNKIYVCGGYD-----GA---------IFLQSVEMYDPITD 675 (748)
Q Consensus 613 ~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~v~GG~~-----~~---------~~~~~v~~yd~~~~ 675 (748)
|. ++.++|.+|.++-.|.+.. -.|.||+.|+++.+++++|||||+- .. ...+++-++|+.+.
T Consensus 226 G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~ 304 (830)
T KOG4152|consen 226 GC-RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTM 304 (830)
T ss_pred cc-cccceeEEecceeecccccccCCCCCCcccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecch
Confidence 75 4889999999999999875 4688999999999999999999962 11 23568889999999
Q ss_pred cEEEc-------cCCCCCCcceEEEEECCEEEEEeCCCC
Q psy10286 676 EWKMI-------ASMNVMRSRVALVANMGKLWAIGGYDG 707 (748)
Q Consensus 676 ~W~~~-------~~~p~~r~~~~~~~~~~~l~v~GG~~~ 707 (748)
.|..+ ...|.+|.+|+++.++.++|+..|+++
T Consensus 305 ~W~tl~~d~~ed~tiPR~RAGHCAvAigtRlYiWSGRDG 343 (830)
T KOG4152|consen 305 AWETLLMDTLEDNTIPRARAGHCAVAIGTRLYIWSGRDG 343 (830)
T ss_pred heeeeeeccccccccccccccceeEEeccEEEEEeccch
Confidence 99987 237899999999999999999999876
No 25
>KOG1230|consensus
Probab=99.95 E-value=1.5e-26 Score=227.63 Aligned_cols=204 Identities=21% Similarity=0.314 Sum_probs=174.3
Q ss_pred ceEEEEeCCCCceEEc--cCCCcccceeEEEEE-CCEEEEEccCCCC------CCCCeEEEEECCCCeEEEcc--CCCCC
Q psy10286 477 STVEVFDPLVGRWQMA--EAMSMLRSRVGVAVM-KNRLYAFGGYNGS------ERLSTVEEFDPVRRVWNKVS--PMCFK 545 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~--~~~~~~r~~~~~~~~-~~~iyv~GG~~~~------~~~~~v~~yd~~t~~W~~~~--~~~~~ 545 (748)
++++.||..+++|+.+ ++.|.||+.|+++++ .|.+|+|||.-.+ ....++|.||..+++|+++. .-|.+
T Consensus 98 ndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~ 177 (521)
T KOG1230|consen 98 NDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSP 177 (521)
T ss_pred eeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCC
Confidence 7899999999999887 456789999999988 4899999996421 24679999999999999884 46899
Q ss_pred cceeEEEEECCEEEEEeCCCC----CCCCceEEEEeCCCCeEEEccC---CCCCCcceEEEEE-CCEEEEEccCCC----
Q psy10286 546 RSAVGAAALNDKLYVCGGYDG----VSSLNTVECYEPDKDQWRIVKS---MQKHRSAGGVIAF-DSYVYALGGHDG---- 613 (748)
Q Consensus 546 r~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~-~~~iyv~GG~~~---- 613 (748)
|++|.+++...+|++|||+-. ..++|++|+||+++-+|+.+.+ -|.||.+|++.+. +|.|||.||++.
T Consensus 178 RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~k 257 (521)
T KOG1230|consen 178 RSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVK 257 (521)
T ss_pred CccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhh
Confidence 999999999999999999753 2368999999999999999854 4789999999999 999999999842
Q ss_pred -----CcccCeEEEEECCC-----CcEEEccC---CCCCCcceeEEEE-CCEEEEEeccCC---------CccccEEEEE
Q psy10286 614 -----LSIFDSVERYDPKT-----DEWTSVKP---MLTKRCRLGVAAL-NNKIYVCGGYDG---------AIFLQSVEMY 670 (748)
Q Consensus 614 -----~~~~~~~~~yd~~~-----~~W~~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~---------~~~~~~v~~y 670 (748)
....+++|.++|.. -+|+++.+ -|.||.++++++. +++-|.|||... ..+.|++|.|
T Consensus 258 K~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~f 337 (521)
T KOG1230|consen 258 KDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFF 337 (521)
T ss_pred hhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhhe
Confidence 23578999999998 67999874 5899999999988 559999999643 2368999999
Q ss_pred eCCCCcEEEc
Q psy10286 671 DPITDEWKMI 680 (748)
Q Consensus 671 d~~~~~W~~~ 680 (748)
|...++|...
T Consensus 338 dlt~nrW~~~ 347 (521)
T KOG1230|consen 338 DLTRNRWSEG 347 (521)
T ss_pred ecccchhhHh
Confidence 9999999864
No 26
>KOG1230|consensus
Probab=99.95 E-value=1.9e-26 Score=226.88 Aligned_cols=235 Identities=19% Similarity=0.297 Sum_probs=197.1
Q ss_pred cCCCcccceeEEEEE--CCEEEEEccCC--CC--CCCCeEEEEECCCCeEEEc--cCCCCCcceeEEEEE-CCEEEEEeC
Q psy10286 493 EAMSMLRSRVGVAVM--KNRLYAFGGYN--GS--ERLSTVEEFDPVRRVWNKV--SPMCFKRSAVGAAAL-NDKLYVCGG 563 (748)
Q Consensus 493 ~~~~~~r~~~~~~~~--~~~iyv~GG~~--~~--~~~~~v~~yd~~t~~W~~~--~~~~~~r~~~~~~~~-~~~iyv~GG 563 (748)
.+.|.||.++++.+. .+.+++|||.- +. ...+++++||..+++|+.+ ++.|.||+.|.++++ .|.+|+|||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGG 140 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGG 140 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEecc
Confidence 456789999988876 56899999953 22 2468999999999999987 567899999999998 489999999
Q ss_pred CCC------CCCCceEEEEeCCCCeEEEcc--CCCCCCcceEEEEECCEEEEEccCCCC----cccCeEEEEECCCCcEE
Q psy10286 564 YDG------VSSLNTVECYEPDKDQWRIVK--SMQKHRSAGGVIAFDSYVYALGGHDGL----SIFDSVERYDPKTDEWT 631 (748)
Q Consensus 564 ~~~------~~~~~~~~~yd~~~~~W~~~~--~~~~~r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~~W~ 631 (748)
--. .....++|.||..+++|+++. .-|.+|.+|-+++...+|++|||+... .++|++|+||+.+-+|+
T Consensus 141 EfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~ 220 (521)
T KOG1230|consen 141 EFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWS 220 (521)
T ss_pred ccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeee
Confidence 532 124689999999999999985 468899999999999999999998432 36899999999999999
Q ss_pred EccC---CCCCCcceeEEEE-CCEEEEEeccCCC---------ccccEEEEEeCCC-----CcEEEc---cCCCCCCcce
Q psy10286 632 SVKP---MLTKRCRLGVAAL-NNKIYVCGGYDGA---------IFLQSVEMYDPIT-----DEWKMI---ASMNVMRSRV 690 (748)
Q Consensus 632 ~~~~---~p~~r~~~~~~~~-~~~i~v~GG~~~~---------~~~~~v~~yd~~~-----~~W~~~---~~~p~~r~~~ 690 (748)
++.+ .|.+|+++++.+. +|.|||.||+... ...+++|.+++.. -.|+.+ +.-|.||.++
T Consensus 221 Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgf 300 (521)
T KOG1230|consen 221 KLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGF 300 (521)
T ss_pred eccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCce
Confidence 9863 5899999999998 9999999998532 3467999999988 678887 4578999999
Q ss_pred EEEEE-CCEEEEEeCCCC---------CCCCCeEEEEeCCCCceEec
Q psy10286 691 ALVAN-MGKLWAIGGYDG---------VSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 691 ~~~~~-~~~l~v~GG~~~---------~~~~~~v~~yd~~~~~W~~~ 727 (748)
++++. +++-+.|||..+ +...++++.||...++|...
T Consensus 301 sv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 301 SVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEG 347 (521)
T ss_pred eEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHh
Confidence 99887 679999999865 12568999999999999864
No 27
>KOG4152|consensus
Probab=99.94 E-value=3.4e-26 Score=229.85 Aligned_cols=253 Identities=16% Similarity=0.227 Sum_probs=208.7
Q ss_pred ceEEc----cCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEc---cCCCCCcceeEEEEECCEEEE
Q psy10286 488 RWQMA----EAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKV---SPMCFKRSAVGAAALNDKLYV 560 (748)
Q Consensus 488 ~W~~~----~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~~iyv 560 (748)
+|+++ ++.|.+|.+|-++++..-|.+|||-+. +..+.+.+||..+++|..- .++|.+-..|+.+..+.+||+
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNE-GiiDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilv 96 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNE-GIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILV 96 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCcc-cchhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEE
Confidence 68776 467899999999999999999999543 3567899999999999754 578889999999999999999
Q ss_pred EeCCCC-CCCCceEEEEeCCCCeEEEcc-------CCCCCCcceEEEEECCEEEEEccCCCC---------cccCeEEEE
Q psy10286 561 CGGYDG-VSSLNTVECYEPDKDQWRIVK-------SMQKHRSAGGVIAFDSYVYALGGHDGL---------SIFDSVERY 623 (748)
Q Consensus 561 ~GG~~~-~~~~~~~~~yd~~~~~W~~~~-------~~~~~r~~~~~~~~~~~iyv~GG~~~~---------~~~~~~~~y 623 (748)
|||... ..+.|+++......-.|+.+. +.|.||-+|+...++++.|+|||..++ .+++++|..
T Consensus 97 FGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~l 176 (830)
T KOG4152|consen 97 FGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYIL 176 (830)
T ss_pred EccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEE
Confidence 999875 346787777766666777763 467899999999999999999997322 358899998
Q ss_pred ECCCC----cEEEc---cCCCCCCcceeEEEE------CCEEEEEeccCCCccccEEEEEeCCCCcEEEc---cCCCCCC
Q psy10286 624 DPKTD----EWTSV---KPMLTKRCRLGVAAL------NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI---ASMNVMR 687 (748)
Q Consensus 624 d~~~~----~W~~~---~~~p~~r~~~~~~~~------~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~r 687 (748)
+...+ .|... ..+|.+|..|.++++ ..++||+||.++. .+.++|.+|+++..|.+. +..|.+|
T Consensus 177 eL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G~-RLgDLW~Ldl~Tl~W~kp~~~G~~PlPR 255 (830)
T KOG4152|consen 177 ELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSGC-RLGDLWTLDLDTLTWNKPSLSGVAPLPR 255 (830)
T ss_pred EeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEcccccc-cccceeEEecceeecccccccCCCCCCc
Confidence 87644 48764 368999999999998 2479999998875 488999999999999986 5678899
Q ss_pred cceEEEEECCEEEEEeCCCC----C----------CCCCeEEEEeCCCCceEec-------CCCCCCCcceEEEEe
Q psy10286 688 SRVALVANMGKLWAIGGYDG----V----------SNLPTVEVYDPSTDSWAFV-------APMCAHEGGVGVGVI 742 (748)
Q Consensus 688 ~~~~~~~~~~~l~v~GG~~~----~----------~~~~~v~~yd~~~~~W~~~-------~~~~~~r~~~~~~~~ 742 (748)
+-|+++.+++++|||||+-- + ...++.-++++.+..|..+ ...|++|.+|+++.+
T Consensus 256 SLHsa~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCAvAi 331 (830)
T KOG4152|consen 256 SLHSATTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCAVAI 331 (830)
T ss_pred ccccceeecceeEEecceeeeeccccccccccceeeeccceeeeeecchheeeeeeccccccccccccccceeEEe
Confidence 99999999999999999731 1 1346788999999999854 238999999998765
No 28
>KOG2075|consensus
Probab=99.86 E-value=3.2e-21 Score=194.49 Aligned_cols=230 Identities=21% Similarity=0.380 Sum_probs=186.9
Q ss_pred hhHhhHHHHHHHHHhcCCcccEEEEECC-----eEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcc
Q psy10286 56 DLFSQGFPVMEEIRRQGKLCDVTIKVDD-----QSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAAT 130 (748)
Q Consensus 56 ~~~~~~~~~l~~l~~~~~~~Dv~i~~~~-----~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~ 130 (748)
-....+.+....++++...+||.|++++ +.|||||.|||..|.+|.+||.+++.+....
T Consensus 96 ~~~~t~~er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~~s~---------------- 159 (521)
T KOG2075|consen 96 AQKETMRERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAEDASL---------------- 159 (521)
T ss_pred cchhhHHHhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccccCc----------------
Confidence 3446677788899999999999999963 7999999999999999999999998876444
Q ss_pred ccccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCc
Q psy10286 131 IPYFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNN 210 (748)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~n 210 (748)
+|+++++++.+|..+|+|+|+.++.+..+++..++.+|+.|-++.|.+.|.+||+.++-+.|
T Consensus 160 ------------------ei~lpdvepaaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~n 221 (521)
T KOG2075|consen 160 ------------------EIRLPDVEPAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADN 221 (521)
T ss_pred ------------------eeecCCcChhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChH
Confidence 45559999999999999999999999999999999999999999999999999888644433
Q ss_pred ccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHH
Q psy10286 211 VLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLS 290 (748)
Q Consensus 211 cl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~ 290 (748)
. +.+|.+.|..+ ...+|.
T Consensus 222 a------------------------------f~~L~q~A~lf--------------------------------~ep~Li 239 (521)
T KOG2075|consen 222 A------------------------------FLELFQRAKLF--------------------------------DEPSLI 239 (521)
T ss_pred H------------------------------HHHHHHHHHhh--------------------------------cCHHHH
Confidence 2 23333334444 445666
Q ss_pred HHHHHHHHHhhhhhccCcccccCC--HHhHhcccccCCcCCCChHHHHHHHHHHHhcC---------ccCCCCCHHHHHh
Q psy10286 291 EAADKYVQQYFHEVSMSDEFIGLG--VNEVNDIVKRSELHLMSEEQVFEAVMRWVKHN---------ASERAPSLPRLLA 359 (748)
Q Consensus 291 ~~~~~~i~~~~~~l~~~~~f~~L~--~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~---------~~~r~~~~~~l~~ 359 (748)
+.|++-|..++...+..+.|..+. .+.++++++++.+.+. |..+|+|+++|.... ...+...+.+.+.
T Consensus 240 ~~c~e~id~~~~~al~~EGf~did~~~dt~~evl~r~~l~~~-e~~lfeA~lkw~~~e~~rs~~~~~~~~~~~vl~~~l~ 318 (521)
T KOG2075|consen 240 SICLEVIDKSFEDALTPEGFCDIDSTRDTYEEVLRRDTLEAR-EFRLFEAALKWAEAECQRSGGPVNGQNKRKVLGRALS 318 (521)
T ss_pred HHHHHHhhhHHHhhhCccceeehhhHHHHHHHHHhhcccchh-HHHHHHHHHhhccCcchhhcCCCCccchhhhhhheee
Confidence 666666778889999999999998 9999999999999874 999999999998742 2344567788888
Q ss_pred hccCCCCChHHHHhhhccchhhc
Q psy10286 360 AVRLPLLSPHYLADRVATEALIR 382 (748)
Q Consensus 360 ~vR~~~l~~~~l~~~~~~~~l~~ 382 (748)
.+|||.|..+.+...+.+.++..
T Consensus 319 lirfp~m~~Eefa~~~e~sgIl~ 341 (521)
T KOG2075|consen 319 LIRFPFMNIEEFARGVEQSGILT 341 (521)
T ss_pred eecccccchhhhccCccccCCcc
Confidence 99999999988876665555543
No 29
>KOG4682|consensus
Probab=99.82 E-value=1.1e-19 Score=178.67 Aligned_cols=187 Identities=19% Similarity=0.355 Sum_probs=161.3
Q ss_pred HHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccc
Q psy10286 64 VMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMA 143 (748)
Q Consensus 64 ~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (748)
-+++|+.+++-+||++.+-|.+...||..|+ .|+||.+||+|.|+|+....|.+
T Consensus 59 iyq~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es~~~iIql------------------------- 112 (488)
T KOG4682|consen 59 IYQNLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKESSMNIIQL------------------------- 112 (488)
T ss_pred HHHHHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChhhCceEEE-------------------------
Confidence 3788999999999999999999999999997 48999999999999999988887
Q ss_pred cccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHH
Q psy10286 144 ESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAM 223 (748)
Q Consensus 144 ~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~ 223 (748)
+|..+.|+..+|..++.-+|.+++.|+.+.|..++++|.++|++.|.+.|.+.|+..+.++|.
T Consensus 113 -----eI~Dp~Id~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldgl~qrC~evMie~lspkta------------ 175 (488)
T KOG4682|consen 113 -----EIPDPNIDVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDGLIQRCGEVMIETLSPKTA------------ 175 (488)
T ss_pred -----EcCCCcccHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcChhhh------------
Confidence 556688999999999999999999999999999999999999999999998888886555444
Q ss_pred HHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHhhhh
Q psy10286 224 EALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHE 303 (748)
Q Consensus 224 ~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~ 303 (748)
+.++..+..|+.+.|.+.|++|+..|+..
T Consensus 176 ---------------------------------------------------~~yYea~ckYgle~vk~kc~ewl~~nl~~ 204 (488)
T KOG4682|consen 176 ---------------------------------------------------CGYYEAACKYGLESVKKKCLEWLLNNLMT 204 (488)
T ss_pred ---------------------------------------------------hHhhhhhhhhhhHHHHHHHHHHHHHhhHh
Confidence 33444455566667777777777778777
Q ss_pred hccCcccccCCHHhHhcccccCCcCCCC-hHHHHHHHHHHHh
Q psy10286 304 VSMSDEFIGLGVNEVNDIVKRSELHLMS-EEQVFEAVMRWVK 344 (748)
Q Consensus 304 l~~~~~f~~L~~~~l~~il~~~~l~~~~-E~~v~~~v~~W~~ 344 (748)
+.....|..++.+.+..++.+++|.+-+ |.+++..+..|+-
T Consensus 205 i~~~q~l~ei~~~Lm~~ll~SpnLfvmq~EfdLyttlk~Wmf 246 (488)
T KOG4682|consen 205 IQNVQLLKEISINLMKQLLGSPNLFVMQVEFDLYTTLKKWMF 246 (488)
T ss_pred hhhHHHHHhcCHHHHHHHhCCCCeEEEEeeehHHHHHHHHHH
Confidence 7776688889999999999999997655 9999999999975
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.76 E-value=5.4e-17 Score=158.93 Aligned_cols=243 Identities=19% Similarity=0.291 Sum_probs=182.8
Q ss_pred CccceEEEEeCCC--CceEEccCCC-cccceeEEEEECCEEEEEccCCCC-----CCCCeEEEEECCCCeEEEccC-CCC
Q psy10286 474 DSLSTVEVFDPLV--GRWQMAEAMS-MLRSRVGVAVMKNRLYAFGGYNGS-----ERLSTVEEFDPVRRVWNKVSP-MCF 544 (748)
Q Consensus 474 ~~~~~~~~yd~~~--~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~~-----~~~~~v~~yd~~t~~W~~~~~-~~~ 544 (748)
..-...+..|... ..|++++..| .+|.+..+++++++||||||.... ...+++++|||.+|+|..+.. .|.
T Consensus 55 s~G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~ 134 (381)
T COG3055 55 SAGTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPT 134 (381)
T ss_pred cCCccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCCCCceEeeeeEEecCCCChhheecccccc
Confidence 3345667777665 4799999988 679999999999999999998632 236899999999999998854 567
Q ss_pred CcceeEEEEECC-EEEEEeCCCC----------------------------------CCCCceEEEEeCCCCeEEEccCC
Q psy10286 545 KRSAVGAAALND-KLYVCGGYDG----------------------------------VSSLNTVECYEPDKDQWRIVKSM 589 (748)
Q Consensus 545 ~r~~~~~~~~~~-~iyv~GG~~~----------------------------------~~~~~~~~~yd~~~~~W~~~~~~ 589 (748)
...++.++.+++ +||++||.+. ......+..|||.++.|+.+...
T Consensus 135 gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~ 214 (381)
T COG3055 135 GLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGEN 214 (381)
T ss_pred ccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcC
Confidence 788899999977 9999999631 01246778999999999999876
Q ss_pred C-CCCcceEEEEECCEEEEEccCCCCc-ccCeEEEEECC--CCcEEEccCCCCCCcce-------eEEEECCEEEEEecc
Q psy10286 590 Q-KHRSAGGVIAFDSYVYALGGHDGLS-IFDSVERYDPK--TDEWTSVKPMLTKRCRL-------GVAALNNKIYVCGGY 658 (748)
Q Consensus 590 ~-~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~--~~~W~~~~~~p~~r~~~-------~~~~~~~~i~v~GG~ 658 (748)
| .++++.+.+.-++++.++-|.-..+ +...+.+++.. .-+|..++++|.+-..- -.-..++.+.|.||-
T Consensus 215 pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGA 294 (381)
T COG3055 215 PFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGA 294 (381)
T ss_pred cccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCC
Confidence 6 4677766666688899998874333 35566777765 45799998877654432 112236788888884
Q ss_pred CC-------------------CccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCC-CCCeEEEEe
Q psy10286 659 DG-------------------AIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVS-NLPTVEVYD 718 (748)
Q Consensus 659 ~~-------------------~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~v~~yd 718 (748)
+= ....++||.+| .+.|+.++.+|.++.+..++..++.||++||-+..+ ....|+.+-
T Consensus 295 nF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~YG~s~~~nn~vl~IGGE~~~Gka~~~v~~l~ 372 (381)
T COG3055 295 NFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLAYGVSLSYNNKVLLIGGETSGGKATTRVYSLS 372 (381)
T ss_pred CChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCccceEEEecCCcEEEEccccCCCeeeeeEEEEE
Confidence 31 01346899998 899999999999999999999999999999976544 344555443
No 31
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.76 E-value=1.8e-18 Score=151.28 Aligned_cols=107 Identities=32% Similarity=0.661 Sum_probs=93.8
Q ss_pred HHHHHhcCCcccEEEEEC-CeEEeeeeeeeeccCHHHHHhhccc-ccccccceeeeecchheehhhcccccccccccccc
Q psy10286 65 MEEIRRQGKLCDVTIKVD-DQSFTCHRIVLAATIPYFQAMFTSD-MAESKQREITMQGIDAVIVLAATIPYFQAMFTSDM 142 (748)
Q Consensus 65 l~~l~~~~~~~Dv~i~~~-~~~~~aHk~iL~a~S~~F~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (748)
|+++++++.++|++|.++ +++|+|||.||+++|+||++||.+. +.+.....
T Consensus 1 ~~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~~~~~--------------------------- 53 (111)
T PF00651_consen 1 LNDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKESTVPE--------------------------- 53 (111)
T ss_dssp HHHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTSSEEE---------------------------
T ss_pred ChHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccccccc---------------------------
Confidence 578999999999999999 8999999999999999999999986 34433333
Q ss_pred ccccceeeeecCCCHHHHHHHHHhhhceeEEee-chhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 143 AESKQREITMQGIDAVAMEALINFVYSGRVTIH-SQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 143 ~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~-~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
|.++++++++|+.+|+|+|+|++.++ .+++.+++.+|++|+++.|++.|.++|.++
T Consensus 54 -------i~~~~~~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 54 -------ISLPDVSPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp -------EEETTSCHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred -------cccccccccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 44499999999999999999999999 999999999999999999999999999874
No 32
>KOG0783|consensus
Probab=99.76 E-value=5.4e-18 Score=180.01 Aligned_cols=241 Identities=13% Similarity=0.243 Sum_probs=179.7
Q ss_pred hhHHHHHHHHHhcC----CcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcccccc
Q psy10286 59 SQGFPVMEEIRRQG----KLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYF 134 (748)
Q Consensus 59 ~~~~~~l~~l~~~~----~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 134 (748)
+.+...+.+|+... .+.||||.|++..|+|||.|||+||++||++|....+.+....|.+.++
T Consensus 539 s~fe~sf~kLl~e~~~~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s~~~dIY~~~~------------- 605 (1267)
T KOG0783|consen 539 SNFEGSFPKLLSEENYKDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSSVSNDIYIEEI------------- 605 (1267)
T ss_pred ccchhhhHHHhhccccccccceEEEEecCeecccceEEEEeccHHHHHHHHhhccccccceeeeecc-------------
Confidence 34556677776655 6779999999999999999999999999999988766666666766443
Q ss_pred ccccccccccccceeeeecCCCHHHHHHHHHhhhceeEE--------------eechhHHH-------HHHHHHHhcchh
Q psy10286 135 QAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVT--------------IHSQNVQS-------LMVVASFLQMQK 193 (748)
Q Consensus 135 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~--------------i~~~~v~~-------ll~~A~~l~i~~ 193 (748)
.+....|.++++++..|+.+|+||||+.+- .-.+|... +.-.++.|++.+
T Consensus 606 ---------~~~~~~~~ve~i~p~mfe~lL~~iYtdt~~~P~heDdidci~fs~~k~N~~qrtrtCeMl~~~lekf~l~e 676 (1267)
T KOG0783|consen 606 ---------TQSHSTIRVEDIPPLMFEILLHYIYTDTLLSPWHEDDIDCIRFSPLKENLSQRTRTCEMLANLLEKFHLAE 676 (1267)
T ss_pred ---------cccCceeeeccCCHHHHHHHHHHHhcccccCCccccchhhhhccccccChhhcccHHHHHHHHHhhhhHHh
Confidence 345567788999999999999999999542 11223333 777788888877
Q ss_pred HHHHHHHHhhhc----------------------------------ccCCcccchhhh----------------------
Q psy10286 194 VADACADFLKKR----------------------------------FHPNNVLDYYVL---------------------- 217 (748)
Q Consensus 194 l~~~c~~~l~~~----------------------------------l~~~ncl~i~~~---------------------- 217 (748)
|......+--.+ +....|.-..++
T Consensus 677 l~~~~~s~~~~~~~~n~ia~~~~N~l~lsdh~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~~ 756 (1267)
T KOG0783|consen 677 LLPFSVSRQPLLSLTNDIAQLYNNFLVLSDHEETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNLS 756 (1267)
T ss_pred hhhhhhhccchhhcccHHHHHhcCeeEecCCccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeecC
Confidence 776543322110 111222211111
Q ss_pred -hhhhHHHHHHHhhcc-eeEEE-----ecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHH
Q psy10286 218 -FSCRAMEALINFAYS-GRVTI-----HSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLS 290 (748)
Q Consensus 218 -~~~~~~~~ll~~~y~-~~~~~-----~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~ 290 (748)
.....++.+++|+|+ ....+ ..+-+.+++..||.+.+.+|+.+|+.-|.+.|+..+|-.++.+|..|++.+|+
T Consensus 757 p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl~lk~~~~llefaamY~ak~L~ 836 (1267)
T KOG0783|consen 757 PLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKLNLKTLPTLLEFAAMYHAKELY 836 (1267)
T ss_pred cchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchHHHHHHHHHhhHHHHH
Confidence 012467889999994 33221 23346889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhccCcccccCCHHhHhcc
Q psy10286 291 EAADKYVQQYFHEVSMSDEFIGLGVNEVNDI 321 (748)
Q Consensus 291 ~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~i 321 (748)
..|++||++|+..++.-....+++-..|..+
T Consensus 837 ~~C~dfic~N~~~~Learsi~~~dg~~LK~l 867 (1267)
T KOG0783|consen 837 SRCIDFICHNIEFFLEARSISEWDGFHLKKL 867 (1267)
T ss_pred HHHHHHHHHhHHHHHHhccHhhhcchHHHHH
Confidence 9999999999999988777777766655543
No 33
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.73 E-value=2.7e-16 Score=154.07 Aligned_cols=245 Identities=19% Similarity=0.243 Sum_probs=182.4
Q ss_pred EEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCC--CeEEEccCCC-CCcceeEEEEECCEEEEEeCCCC
Q psy10286 490 QMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVR--RVWNKVSPMC-FKRSAVGAAALNDKLYVCGGYDG 566 (748)
Q Consensus 490 ~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~-~~r~~~~~~~~~~~iyv~GG~~~ 566 (748)
.++|++|.+-.+-+-+.+++.+||-=|..+ ...+..|... ..|+.++..| .+|....+++++++||+|||...
T Consensus 28 ~~lPdlPvg~KnG~Ga~ig~~~YVGLGs~G----~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk 103 (381)
T COG3055 28 GQLPDLPVGFKNGAGALIGDTVYVGLGSAG----TAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGK 103 (381)
T ss_pred ccCCCCCccccccccceecceEEEEeccCC----ccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeecccc
Confidence 346788888766677888899999766333 3566777664 5799999877 67999999999999999999763
Q ss_pred C-----CCCceEEEEeCCCCeEEEccC-CCCCCcceEEEEECC-EEEEEccCCCC-------------------------
Q psy10286 567 V-----SSLNTVECYEPDKDQWRIVKS-MQKHRSAGGVIAFDS-YVYALGGHDGL------------------------- 614 (748)
Q Consensus 567 ~-----~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~~~-~iyv~GG~~~~------------------------- 614 (748)
. ..++++++|||.+|+|+++.. .|....+++++.+++ +||++||.+..
T Consensus 104 ~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~ 183 (381)
T COG3055 104 SVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAH 183 (381)
T ss_pred CCCCCceEeeeeEEecCCCChhheeccccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHH
Confidence 2 247999999999999999964 455677888888877 99999996321
Q ss_pred ---------cccCeEEEEECCCCcEEEccCCC-CCCcceeEEEECCEEEEEeccCCCc-cccEEEEEeCC--CCcEEEcc
Q psy10286 615 ---------SIFDSVERYDPKTDEWTSVKPML-TKRCRLGVAALNNKIYVCGGYDGAI-FLQSVEMYDPI--TDEWKMIA 681 (748)
Q Consensus 615 ---------~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~--~~~W~~~~ 681 (748)
.....+..|||.+++|+.+...| .++++.+.+.-++++.++-|.-... ....+++++.. ..+|..++
T Consensus 184 yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~ 263 (381)
T COG3055 184 YFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLS 263 (381)
T ss_pred HhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeecc
Confidence 12457899999999999998666 4566655555578888888864332 34566677665 45799998
Q ss_pred CCCCCCcce-------EEEEECCEEEEEeCCCCC-------------------CCCCeEEEEeCCCCceEecCCCCCCCc
Q psy10286 682 SMNVMRSRV-------ALVANMGKLWAIGGYDGV-------------------SNLPTVEVYDPSTDSWAFVAPMCAHEG 735 (748)
Q Consensus 682 ~~p~~r~~~-------~~~~~~~~l~v~GG~~~~-------------------~~~~~v~~yd~~~~~W~~~~~~~~~r~ 735 (748)
++|.+...- -.-..++.+.|.||.+-. ...++|+++| ++.|+.++.||.+++
T Consensus 264 ~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~l~ 341 (381)
T COG3055 264 DLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQGLA 341 (381)
T ss_pred CCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCCcc
Confidence 888764321 122347889999995411 1345789988 899999999999887
Q ss_pred ceEEE
Q psy10286 736 GVGVG 740 (748)
Q Consensus 736 ~~~~~ 740 (748)
+-..+
T Consensus 342 YG~s~ 346 (381)
T COG3055 342 YGVSL 346 (381)
T ss_pred ceEEE
Confidence 65544
No 34
>KOG4591|consensus
Probab=99.69 E-value=6.3e-17 Score=143.90 Aligned_cols=171 Identities=19% Similarity=0.385 Sum_probs=126.1
Q ss_pred hhHhhHHHHHHHHHhcCCcccEEEEEC---CeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcccc
Q psy10286 56 DLFSQGFPVMEEIRRQGKLCDVTIKVD---DQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIP 132 (748)
Q Consensus 56 ~~~~~~~~~l~~l~~~~~~~Dv~i~~~---~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 132 (748)
++.+.++.--..|++.+.|+|++|.++ ++.++|||.||||||.+.. |...-.| ++
T Consensus 48 SF~SRLLaitadL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-ks------------------- 105 (280)
T KOG4591|consen 48 SFISRLLAITADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-KS------------------- 105 (280)
T ss_pred hHHHHHHHHHHHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-ch-------------------
Confidence 567888888899999999999999997 4789999999999998765 2211111 11
Q ss_pred ccccccccccccccceeeeecCCCHHHHHHHHHhhhceeEEeechh--HHHHHHHHHHhcchhHHHHHHHHhhhcccCCc
Q psy10286 133 YFQAMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQN--VQSLMVVASFLQMQKVADACADFLKKRFHPNN 210 (748)
Q Consensus 133 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~--v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~n 210 (748)
.+..++++++++|..+|+|+||++++...++ +.++..+|+.||++.|++.|+.
T Consensus 106 ---------------e~~~~dDad~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~Lke~C~k---------- 160 (280)
T KOG4591|consen 106 ---------------EELDLDDADFEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLELLKERCEK---------- 160 (280)
T ss_pred ---------------hhhcccccCHHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHHHHHHHHH----------
Confidence 1223389999999999999999999876654 5555555555555555555544
Q ss_pred ccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHH
Q psy10286 211 VLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLS 290 (748)
Q Consensus 211 cl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~ 290 (748)
-+-..+.++||+.++.+|+.++...|.
T Consensus 161 -----------------------------------------------------~l~a~l~V~NCIk~Ye~AEe~n~~qL~ 187 (280)
T KOG4591|consen 161 -----------------------------------------------------GLGALLHVDNCIKFYEFAEELNARQLM 187 (280)
T ss_pred -----------------------------------------------------HHhhHhhHhhHHHHHHHHHHhhHHHHH
Confidence 444445566666667777777778888
Q ss_pred HHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCc
Q psy10286 291 EAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSEL 327 (748)
Q Consensus 291 ~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l 327 (748)
..|-..|..+...+ ...+|.+|++..|-.++....-
T Consensus 188 n~~~eiIA~~W~dL-~~a~FaqMs~aLLYklId~kTe 223 (280)
T KOG4591|consen 188 NVAAEIIAGAWDDL-GKADFAQMSAALLYKLIDGKTE 223 (280)
T ss_pred HHHHHHHHhhcccc-ChHHHHhccHHHHHHHHcCCCc
Confidence 88888887777664 4578999999999999887654
No 35
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.57 E-value=4e-15 Score=124.49 Aligned_cols=90 Identities=37% Similarity=0.738 Sum_probs=81.6
Q ss_pred cEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 76 DVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 76 Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
||+|.+++++|++||.+|+++|+||++||.+.+.+.....+. ++++
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~~~~~i~----------------------------------l~~~ 46 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKESKKSEIY----------------------------------LDDV 46 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccCCCCEEE----------------------------------ecCC
Confidence 789999999999999999999999999999876655444444 4889
Q ss_pred CHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHH
Q psy10286 156 DAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACA 199 (748)
Q Consensus 156 ~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~ 199 (748)
++++|+.+|+|+|++++.++..++.+++.+|++|+++.|.+.|+
T Consensus 47 ~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 47 SPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred CHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 99999999999999999999999999999999999999999984
No 36
>KOG2437|consensus
Probab=99.54 E-value=3.6e-15 Score=150.91 Aligned_cols=235 Identities=17% Similarity=0.265 Sum_probs=171.8
Q ss_pred CcccceeEEEEECC--EEEEEccCCCCCCCCeEEEEECCCCeEEEc---cCCCCCcceeEEEEECC--EEEEEeCCCCC-
Q psy10286 496 SMLRSRVGVAVMKN--RLYAFGGYNGSERLSTVEEFDPVRRVWNKV---SPMCFKRSAVGAAALND--KLYVCGGYDGV- 567 (748)
Q Consensus 496 ~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~---~~~~~~r~~~~~~~~~~--~iyv~GG~~~~- 567 (748)
|..|.+|.++...+ .||+.||++|-..+.++|.|+...+.|..+ ...|..|..|.++..-. ++|+.|-+-+.
T Consensus 258 p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~sS 337 (723)
T KOG2437|consen 258 PGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDSS 337 (723)
T ss_pred ccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhccccc
Confidence 56699999999855 999999999999999999999999999987 34789999999998744 99999976432
Q ss_pred -----CCCceEEEEeCCCCeEEEcc------CCCCCCcceEEEEECCE--EEEEccCCC---CcccCeEEEEECCCCcEE
Q psy10286 568 -----SSLNTVECYEPDKDQWRIVK------SMQKHRSAGGVIAFDSY--VYALGGHDG---LSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 568 -----~~~~~~~~yd~~~~~W~~~~------~~~~~r~~~~~~~~~~~--iyv~GG~~~---~~~~~~~~~yd~~~~~W~ 631 (748)
....++|+||.+++.|..+. .-|...+.|.+++.+.+ |||+||... ......++.||.....|.
T Consensus 338 ~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~ 417 (723)
T KOG2437|consen 338 VRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWK 417 (723)
T ss_pred cccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccHH
Confidence 23578999999999998874 24566788999999877 999999832 235778999999999998
Q ss_pred EccC----------CCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEcc-------CCCCCCcceEE
Q psy10286 632 SVKP----------MLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA-------SMNVMRSRVAL 692 (748)
Q Consensus 632 ~~~~----------~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-------~~p~~r~~~~~ 692 (748)
.+.. ....|.+|.+-.+ +.++|++||......++-...||+....=..+. ++...+....-
T Consensus 418 ~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~~~~~s~~~k~dsS~~pS~~f~qR 497 (723)
T KOG2437|consen 418 LLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEHVDIISDGTKKDSSMVPSTGFTQR 497 (723)
T ss_pred HHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcceeccccchhhhccCcCccccCCCcchhhh
Confidence 7642 2345777776555 678999999877666666667766543322221 11111111111
Q ss_pred EE---ECCEEEEEeCCCCC------CCCCeEEEEeCCCCceEecCCC
Q psy10286 693 VA---NMGKLWAIGGYDGV------SNLPTVEVYDPSTDSWAFVAPM 730 (748)
Q Consensus 693 ~~---~~~~l~v~GG~~~~------~~~~~v~~yd~~~~~W~~~~~~ 730 (748)
+. -..+|.+.-|+... +..++.|+|+..+++|..+..+
T Consensus 498 s~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~~I 544 (723)
T KOG2437|consen 498 ATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIYKI 544 (723)
T ss_pred cccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHhhh
Confidence 12 24677777776422 2456889999999999765443
No 37
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=99.50 E-value=1.1e-14 Score=125.34 Aligned_cols=102 Identities=40% Similarity=0.701 Sum_probs=92.4
Q ss_pred cchHHHHHhhcCchHHHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCC
Q psy10286 274 VLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPS 353 (748)
Q Consensus 274 ~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~ 353 (748)
|++++.+|..+++.+|.++|.+||..||.++.++.+|.+|+.+.+..+++++++++.+|.++|+++++|++++...|.+.
T Consensus 1 C~~i~~~A~~~~~~~L~~~~~~~i~~nf~~v~~~~~f~~L~~~~l~~iL~~~~l~v~~E~~v~~av~~W~~~~~~~r~~~ 80 (103)
T PF07707_consen 1 CLSIYRLAEKYGLEELAEACLRFIAKNFNEVSKSDEFLELPFDQLIEILSSDDLNVSSEDDVFEAVLRWLKHNPENREEH 80 (103)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHTHHHHTTSHHHHCS-HHHHHHHHHTSS--ECTCCCHHHHHHHHHHCTHHHHTTT
T ss_pred ChhHHHHHHHcChHHHHHHHHHHHHHHHHHHccchhhhcCCHHHHHHHHhccccccccHHHHHHHHHHHHHhCHHHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred HHHHHhhccCCCCChHHHHhhh
Q psy10286 354 LPRLLAAVRLPLLSPHYLADRV 375 (748)
Q Consensus 354 ~~~l~~~vR~~~l~~~~l~~~~ 375 (748)
+..++++|||++|+++.|.+.+
T Consensus 81 ~~~Ll~~iR~~~l~~~~L~~~v 102 (103)
T PF07707_consen 81 LKELLSCIRFPLLSPEELQNVV 102 (103)
T ss_dssp HHHHHCCCHHHCT-HHHHHHCC
T ss_pred HHHHHHhCCcccCCHHHHHHHH
Confidence 9999999999999999987643
No 38
>KOG2437|consensus
Probab=99.37 E-value=2.5e-13 Score=137.73 Aligned_cols=177 Identities=20% Similarity=0.245 Sum_probs=138.1
Q ss_pred CCCCcceeEEEEECC--EEEEEeCCCCCCCCceEEEEeCCCCeEEEcc---CCCCCCcceEEEEECC--EEEEEccCCCC
Q psy10286 542 MCFKRSAVGAAALND--KLYVCGGYDGVSSLNTVECYEPDKDQWRIVK---SMQKHRSAGGVIAFDS--YVYALGGHDGL 614 (748)
Q Consensus 542 ~~~~r~~~~~~~~~~--~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~~~--~iyv~GG~~~~ 614 (748)
-|..|.+|-++...+ .||+.||++|...+.+.|.|+...+.|+.+. ..|..|..|-++.... ++|+.|-+-+.
T Consensus 257 ~p~~RgGHQMV~~~~~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S~~KLYLlG~Y~~s 336 (723)
T KOG2437|consen 257 RPGMRGGHQMVIDVQTECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDISRRKLYLLGRYLDS 336 (723)
T ss_pred CccccCcceEEEeCCCcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhhHhHHhhhhhcccc
Confidence 367899999999855 9999999999999999999999999998874 4788899999998755 99999976332
Q ss_pred ------cccCeEEEEECCCCcEEEcc------CCCCCCcceeEEEECCE--EEEEeccCCC---ccccEEEEEeCCCCcE
Q psy10286 615 ------SIFDSVERYDPKTDEWTSVK------PMLTKRCRLGVAALNNK--IYVCGGYDGA---IFLQSVEMYDPITDEW 677 (748)
Q Consensus 615 ------~~~~~~~~yd~~~~~W~~~~------~~p~~r~~~~~~~~~~~--i~v~GG~~~~---~~~~~v~~yd~~~~~W 677 (748)
....++|+||..++.|..+. .-|..-+.|+|++.+++ |||+||.... .....+|.||.+...|
T Consensus 337 S~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w 416 (723)
T KOG2437|consen 337 SVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTW 416 (723)
T ss_pred ccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEEecCeeccCCCccccceEEEecCCccH
Confidence 23578999999999999874 35677888999999887 9999997543 2456899999999999
Q ss_pred EEccC----------CCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEe
Q psy10286 678 KMIAS----------MNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYD 718 (748)
Q Consensus 678 ~~~~~----------~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd 718 (748)
..+.. ....|-+|++-.. +..+|++||-.....++-...||
T Consensus 417 ~~l~e~~~~~~~vvE~~~sR~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~ 469 (723)
T KOG2437|consen 417 KLLREDSCNAGPVVEDIQSRIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYD 469 (723)
T ss_pred HHHHHHHhhcCcchhHHHHHHHHHHHhcCCCCeEEeccCcccceEEeehhcce
Confidence 87632 1234667765444 68899999965443333334443
No 39
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=99.35 E-value=1.9e-12 Score=110.92 Aligned_cols=99 Identities=44% Similarity=0.788 Sum_probs=90.9
Q ss_pred cchHHHHHhhcCchHHHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCChHHHHHHHHHHHhcCccCCCCC
Q psy10286 274 VLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSEEQVFEAVMRWVKHNASERAPS 353 (748)
Q Consensus 274 ~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E~~v~~~v~~W~~~~~~~r~~~ 353 (748)
|+.++.+|+.+++.+|.++|.+||.+||..+.++++|..|+.+.+..+++++++.+.+|..+|+++.+|++++...+. .
T Consensus 1 c~~i~~~a~~~~~~~L~~~~~~~i~~nf~~~~~~~~f~~L~~~~l~~iL~~d~l~v~~E~~v~~av~~W~~~~~~~~~-~ 79 (101)
T smart00875 1 CLGIRRFAELYGLEELLEKALRFILKNFLEVAQSEEFLELSLEQLLSLLSSDDLNVPSEEEVFEAVLRWVKHDPERRR-H 79 (101)
T ss_pred CHhHHHHHHHhChHHHHHHHHHHHHHHHHHHhcCcHHhcCCHHHHHHHhCcccCCCCCHHHHHHHHHHHHHCCHHHHH-H
Confidence 567888899999999999999999999999999999999999999999999999988899999999999999876555 7
Q ss_pred HHHHHhhccCCCCChHHHHh
Q psy10286 354 LPRLLAAVRLPLLSPHYLAD 373 (748)
Q Consensus 354 ~~~l~~~vR~~~l~~~~l~~ 373 (748)
+..+++++||++|++..+..
T Consensus 80 ~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 80 LPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HHHHHHhCCCCCCCHHHHHh
Confidence 88999999999999987653
No 40
>KOG0783|consensus
Probab=99.26 E-value=1.1e-11 Score=132.70 Aligned_cols=133 Identities=20% Similarity=0.437 Sum_probs=105.6
Q ss_pred CCcccEEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceee
Q psy10286 72 GKLCDVTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREI 150 (748)
Q Consensus 72 ~~~~Dv~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 150 (748)
++.-|+.|++ +|++++|||++|+||++||..||..-|.|+.+-.+..
T Consensus 708 ~e~~d~~i~~KDGkvl~aHkc~L~aRlEYF~smf~~~w~E~sS~t~~~-------------------------------- 755 (1267)
T KOG0783|consen 708 EETMDTVIKLKDGKVLKAHKCFLSARLEYFSSMFQFVWMESSSITVNL-------------------------------- 755 (1267)
T ss_pred ccceeEEEEecCCcCcccceeEeeeHHHHHHHHHHHHHhhhccceeec--------------------------------
Confidence 3444666666 7888999999999999999999999998887643333
Q ss_pred eecCCCHHHHHHHHHhhh-ceeEEe-----echhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHH
Q psy10286 151 TMQGIDAVAMEALINFVY-SGRVTI-----HSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAME 224 (748)
Q Consensus 151 ~~~~~~~~~~~~~l~flY-tg~~~i-----~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~ 224 (748)
-.+..+.|..+|+|+| +.+..+ ..+-+-+++.+|+.|-+.+|++.|+.-|.+.+
T Consensus 756 --~p~~~e~m~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~Lk~Ice~~ll~kl------------------ 815 (1267)
T KOG0783|consen 756 --SPLTVEHMSIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILELKSICEQSLLRKL------------------ 815 (1267)
T ss_pred --CcchHHHHHHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHh------------------
Confidence 4567999999999999 444432 22247889999999999999999999988864
Q ss_pred HHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcC
Q psy10286 225 ALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRF 269 (748)
Q Consensus 225 ~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l 269 (748)
+.+++..|++.|.+|...+|+..|.+|+..++
T Consensus 816 -------------~lk~~~~llefaamY~ak~L~~~C~dfic~N~ 847 (1267)
T KOG0783|consen 816 -------------NLKTLPTLLEFAAMYHAKELYSRCIDFICHNI 847 (1267)
T ss_pred -------------cccchHHHHHHHHHhhHHHHHHHHHHHHHHhH
Confidence 45555777777888888888889999988543
No 41
>PF13964 Kelch_6: Kelch motif
Probab=99.21 E-value=3.1e-11 Score=87.77 Aligned_cols=49 Identities=31% Similarity=0.664 Sum_probs=46.1
Q ss_pred ccceeEEEEECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEccCCCCCc
Q psy10286 498 LRSRVGVAVMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKVSPMCFKR 546 (748)
Q Consensus 498 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~~~r 546 (748)
||.+|++++++++|||+||..+ ....+++++||+.+++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6899999999999999999987 678899999999999999999999987
No 42
>PF13964 Kelch_6: Kelch motif
Probab=99.19 E-value=4.9e-11 Score=86.72 Aligned_cols=49 Identities=35% Similarity=0.647 Sum_probs=46.1
Q ss_pred CcceeEEEEECCEEEEEeCCCC-CCCCceEEEEeCCCCeEEEccCCCCCC
Q psy10286 545 KRSAVGAAALNDKLYVCGGYDG-VSSLNTVECYEPDKDQWRIVKSMQKHR 593 (748)
Q Consensus 545 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~~~r 593 (748)
+|.+|++++++++|||+||..+ ...++++++||+.+++|+.+++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 6899999999999999999987 678999999999999999999999987
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.97 E-value=8.1e-10 Score=79.26 Aligned_cols=46 Identities=35% Similarity=0.761 Sum_probs=42.5
Q ss_pred ccceeEEEEECCEEEEEccCCC-CCCCCeEEEEECCCCeEEEccCCC
Q psy10286 498 LRSRVGVAVMKNRLYAFGGYNG-SERLSTVEEFDPVRRVWNKVSPMC 543 (748)
Q Consensus 498 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~v~~yd~~t~~W~~~~~~~ 543 (748)
||.+|++++++++|||+||.++ ...++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999987 778899999999999999999886
No 44
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.93 E-value=1.1e-09 Score=78.62 Aligned_cols=46 Identities=39% Similarity=0.803 Sum_probs=42.6
Q ss_pred CcceeEEEEECCEEEEEeCCCC-CCCCceEEEEeCCCCeEEEccCCC
Q psy10286 545 KRSAVGAAALNDKLYVCGGYDG-VSSLNTVECYEPDKDQWRIVKSMQ 590 (748)
Q Consensus 545 ~r~~~~~~~~~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~~ 590 (748)
||.+|++++++++||++||.++ ...++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 6899999999999999999987 678999999999999999999886
No 45
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.91 E-value=2.7e-09 Score=76.99 Aligned_cols=47 Identities=34% Similarity=0.596 Sum_probs=43.2
Q ss_pred CCEEEEEeCCC--CCCCCCeEEEEeCCCCceEecCCCCCCCcceEEEEe
Q psy10286 696 MGKLWAIGGYD--GVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742 (748)
Q Consensus 696 ~~~l~v~GG~~--~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 742 (748)
|++||||||.+ .....+++|+||+.+++|+.++++|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 68999999998 566789999999999999999999999999999875
No 46
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.85 E-value=6.4e-09 Score=75.03 Aligned_cols=47 Identities=36% Similarity=0.663 Sum_probs=43.1
Q ss_pred CCEEEEEccCC--CCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 508 KNRLYAFGGYN--GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 508 ~~~iyv~GG~~--~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
+++|||+||.+ +....+++|+||+.+++|++++++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCCccceEEEEC
Confidence 57999999998 567789999999999999999999999999999863
No 47
>KOG2838|consensus
Probab=98.82 E-value=8.8e-09 Score=97.05 Aligned_cols=110 Identities=23% Similarity=0.262 Sum_probs=84.6
Q ss_pred hhHhhHHHHHHHHHhcCCcccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccc
Q psy10286 56 DLFSQGFPVMEEIRRQGKLCDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQ 135 (748)
Q Consensus 56 ~~~~~~~~~l~~l~~~~~~~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 135 (748)
....++++++...++...+.|+-|.+....|+|||++|++|||+|+.+......-. ..+
T Consensus 112 ~ea~sf~kD~ad~ye~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~--ae~------------------- 170 (401)
T KOG2838|consen 112 KEANSFLKDFADGYERKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPE--AED------------------- 170 (401)
T ss_pred cchhHHHHHHhhhhheeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcc--hhh-------------------
Confidence 34577889999999999999999999999999999999999999998886532111 000
Q ss_pred cccccccccccceeeeecCCCHHHHHHHHHhhhceeEEee---chhHHHHHHHHHHhcchhHHHH
Q psy10286 136 AMFTSDMAESKQREITMQGIDAVAMEALINFVYSGRVTIH---SQNVQSLMVVASFLQMQKVADA 197 (748)
Q Consensus 136 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~---~~~v~~ll~~A~~l~i~~l~~~ 197 (748)
.-.|..-+++.++|+++|+|+|||+.-.. -.|+.-|-+++.-|+...-.+.
T Consensus 171 -----------i~dik~ag~dm~~feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG~~kkLd~ 224 (401)
T KOG2838|consen 171 -----------ICDIKFAGFDMDAFEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFGCFKKLDE 224 (401)
T ss_pred -----------hhhhhhhccChHHHHHHHHHHHhcccchhhcCCchHHHHHHHHHhhCCchhhhH
Confidence 01233367899999999999999997544 3468888888888887654443
No 48
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.78 E-value=1.8e-08 Score=72.65 Aligned_cols=46 Identities=35% Similarity=0.665 Sum_probs=41.6
Q ss_pred ccceeEEEEECCEEEEEccC---CCCCCCCeEEEEECCCCeEEEccCCC
Q psy10286 498 LRSRVGVAVMKNRLYAFGGY---NGSERLSTVEEFDPVRRVWNKVSPMC 543 (748)
Q Consensus 498 ~r~~~~~~~~~~~iyv~GG~---~~~~~~~~v~~yd~~t~~W~~~~~~~ 543 (748)
||.+|++++++++|||+||. ......+++++||+.+++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 45567889999999999999998875
No 49
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.77 E-value=2e-08 Score=72.47 Aligned_cols=46 Identities=37% Similarity=0.657 Sum_probs=41.6
Q ss_pred CcceeEEEEECCEEEEEeCC---CCCCCCceEEEEeCCCCeEEEccCCC
Q psy10286 545 KRSAVGAAALNDKLYVCGGY---DGVSSLNTVECYEPDKDQWRIVKSMQ 590 (748)
Q Consensus 545 ~r~~~~~~~~~~~iyv~GG~---~~~~~~~~~~~yd~~~~~W~~~~~~~ 590 (748)
+|++|++++++++||++||. ......+++++||+++++|+.++++|
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 68999999999999999999 35567899999999999999998875
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.73 E-value=5.2e-07 Score=88.04 Aligned_cols=160 Identities=16% Similarity=0.278 Sum_probs=110.7
Q ss_pred eEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCC----CcEEEcc-CCCCCCcceeEE
Q psy10286 572 TVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKT----DEWTSVK-PMLTKRCRLGVA 646 (748)
Q Consensus 572 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~----~~W~~~~-~~p~~r~~~~~~ 646 (748)
....||+.+++++.+......-+...+..-+|++.+.||..+. ...+-.|+|.+ ..|.+.. .|..+|...++.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G--~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDG--NKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCcc--ccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 3467999999999886544444444455558999999998542 34677788865 6798876 588999999998
Q ss_pred EE-CCEEEEEeccCCCccccEEEEEeCCC-----CcEEEccC----CCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEE
Q psy10286 647 AL-NNKIYVCGGYDGAIFLQSVEMYDPIT-----DEWKMIAS----MNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEV 716 (748)
Q Consensus 647 ~~-~~~i~v~GG~~~~~~~~~v~~yd~~~-----~~W~~~~~----~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~ 716 (748)
.+ +|+++|+||... ...+.+.... ..|..+.. .+...+-+..+.-+|+||+++.. ...+
T Consensus 125 ~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i 193 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSII 193 (243)
T ss_pred ECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEE
Confidence 88 889999999762 2233333322 12222222 22223334555569999999873 4689
Q ss_pred EeCCCCce-EecCCCCC-CCcc---eEEEEeec
Q psy10286 717 YDPSTDSW-AFVAPMCA-HEGG---VGVGVIPI 744 (748)
Q Consensus 717 yd~~~~~W-~~~~~~~~-~r~~---~~~~~~~~ 744 (748)
||+.++++ +.+|++|. .|.+ -+.++|++
T Consensus 194 ~d~~~n~v~~~lP~lPg~~R~YP~sgssvmLPl 226 (243)
T PF07250_consen 194 YDYKTNTVVRTLPDLPGGPRNYPASGSSVMLPL 226 (243)
T ss_pred EeCCCCeEEeeCCCCCCCceecCCCcceEEecC
Confidence 99999987 88999998 4544 35777777
No 51
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.71 E-value=1.7e-08 Score=73.04 Aligned_cols=47 Identities=26% Similarity=0.443 Sum_probs=31.4
Q ss_pred ccceeEEEEE-CCEEEEEccCCCC-CCCCeEEEEECCCCeEEEccCCCC
Q psy10286 498 LRSRVGVAVM-KNRLYAFGGYNGS-ERLSTVEEFDPVRRVWNKVSPMCF 544 (748)
Q Consensus 498 ~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W~~~~~~~~ 544 (748)
||.+|+++.+ +++|||+||.+.. ...+++|+||+.+++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6899999999 5899999999865 688999999999999999988873
No 52
>smart00612 Kelch Kelch domain.
Probab=98.70 E-value=2.3e-08 Score=71.73 Aligned_cols=47 Identities=36% Similarity=0.769 Sum_probs=42.6
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECC
Q psy10286 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556 (748)
Q Consensus 510 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 556 (748)
+||++||..+....+++++||+.+++|+.+++||.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998766678899999999999999999999999999998765
No 53
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.70 E-value=1.9e-08 Score=72.69 Aligned_cols=47 Identities=30% Similarity=0.514 Sum_probs=31.5
Q ss_pred CCcceeEEEE-CCEEEEEeccCCC-ccccEEEEEeCCCCcEEEccCCCC
Q psy10286 639 KRCRLGVAAL-NNKIYVCGGYDGA-IFLQSVEMYDPITDEWKMIASMNV 685 (748)
Q Consensus 639 ~r~~~~~~~~-~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p~ 685 (748)
+|.+|+++.+ +++|||+||.+.. ..++++|+||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 6899999999 5899999999876 589999999999999999988773
No 54
>smart00612 Kelch Kelch domain.
Probab=98.67 E-value=3.6e-08 Score=70.69 Aligned_cols=47 Identities=40% Similarity=0.838 Sum_probs=42.7
Q ss_pred EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECC
Q psy10286 557 KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDS 603 (748)
Q Consensus 557 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 603 (748)
+||++||..+...++++++||+.+++|+.+++|+.+|..|+++++++
T Consensus 1 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGGQRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCCceeeeEEEECCCCCeEccCCCCCCccccceEEEeCC
Confidence 48999998776678999999999999999999999999999988764
No 55
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.51 E-value=3.5e-05 Score=76.72 Aligned_cols=194 Identities=10% Similarity=0.114 Sum_probs=118.4
Q ss_pred CeEEEEECCCCeEEEccCCCCCccee----EEEEECC-----EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCC-C
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAV----GAAALND-----KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH-R 593 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~----~~~~~~~-----~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~-r 593 (748)
..+.++||.|++|..+|+.+.++... ....++. |+..++...+......+++|+..++.|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 46889999999999998655421111 1111221 555554432222345789999999999998743322 1
Q ss_pred cceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEE-ccCCCCCCc----ceeEEEECCEEEEEeccCCCccccEEE
Q psy10286 594 SAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS-VKPMLTKRC----RLGVAALNNKIYVCGGYDGAIFLQSVE 668 (748)
Q Consensus 594 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~~~p~~r~----~~~~~~~~~~i~v~GG~~~~~~~~~v~ 668 (748)
.....+.++|.+|-++..........+..||..+.+|.. ++ +|..+. ....+.++|++.++....... .-+||
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~-~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~IW 171 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIP-LPCGNSDSVDYLSLINYKGKLAVLKQKKDTN-NFDLW 171 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeee-cCccccccccceEEEEECCEEEEEEecCCCC-cEEEE
Confidence 122367789999988754321111269999999999995 53 343332 345677789988877543211 24788
Q ss_pred EEe-CCCCcEEEccCCC---CCCc----ceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 669 MYD-PITDEWKMIASMN---VMRS----RVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 669 ~yd-~~~~~W~~~~~~p---~~r~----~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
+.+ .....|++.-.++ .+.. ....+..+++|++..+.. ...-+..||+++|
T Consensus 172 vl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 172 VLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYYNVGEN 230 (230)
T ss_pred EECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEEeccCC
Confidence 875 4456798763332 1111 123455688988877531 1123899999875
No 56
>PLN02772 guanylate kinase
Probab=98.51 E-value=6.7e-07 Score=92.62 Aligned_cols=83 Identities=17% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCCcceeEEEECCEEEEEeccCCCc-cccEEEEEeCCCCcEEEc---cCCCCCCcceEEEEE-CCEEEEEeCCCCCCCC
Q psy10286 637 LTKRCRLGVAALNNKIYVCGGYDGAI-FLQSVEMYDPITDEWKMI---ASMNVMRSRVALVAN-MGKLWAIGGYDGVSNL 711 (748)
Q Consensus 637 p~~r~~~~~~~~~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~---~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~ 711 (748)
..++..++++.+++++||+||.+... ..+.+++||..+++|..- +..|.+|.+|+++++ +++|+|+++....+
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~~-- 99 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPD-- 99 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCCc--
Confidence 34788899999999999999987764 678999999999999874 788999999999998 69999998755432
Q ss_pred CeEEEEeCCC
Q psy10286 712 PTVEVYDPST 721 (748)
Q Consensus 712 ~~v~~yd~~~ 721 (748)
.++|.+...|
T Consensus 100 ~~~w~l~~~t 109 (398)
T PLN02772 100 DSIWFLEVDT 109 (398)
T ss_pred cceEEEEcCC
Confidence 5788877665
No 57
>PLN02772 guanylate kinase
Probab=98.48 E-value=8.4e-07 Score=91.90 Aligned_cols=83 Identities=17% Similarity=0.179 Sum_probs=70.3
Q ss_pred CCCcceEEEEECCEEEEEccCCCCc-ccCeEEEEECCCCcEEEcc---CCCCCCcceeEEEE-CCEEEEEeccCCCcccc
Q psy10286 591 KHRSAGGVIAFDSYVYALGGHDGLS-IFDSVERYDPKTDEWTSVK---PMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQ 665 (748)
Q Consensus 591 ~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~ 665 (748)
.++..++++.+++++|++||.++.+ ..+.+++||+.+.+|.... ..|.+|.+|+++++ +++|+|+++.... -+
T Consensus 23 ~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~~--~~ 100 (398)
T PLN02772 23 KPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAP--DD 100 (398)
T ss_pred CCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCCC--cc
Confidence 4788899999999999999987765 6789999999999998764 77899999999999 6899999975443 37
Q ss_pred EEEEEeCCCC
Q psy10286 666 SVEMYDPITD 675 (748)
Q Consensus 666 ~v~~yd~~~~ 675 (748)
++|.+...|.
T Consensus 101 ~~w~l~~~t~ 110 (398)
T PLN02772 101 SIWFLEVDTP 110 (398)
T ss_pred ceEEEEcCCH
Confidence 7888876653
No 58
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.46 E-value=3.5e-06 Score=82.28 Aligned_cols=148 Identities=17% Similarity=0.220 Sum_probs=100.4
Q ss_pred eEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCC----CeEEEcc-CCCCCcceeEEE
Q psy10286 478 TVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVR----RVWNKVS-PMCFKRSAVGAA 552 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t----~~W~~~~-~~~~~r~~~~~~ 552 (748)
.-..||+.+++++.+......-+..++..-+|++.+.||..+ ..+.+..|+|.+ ..|.+.+ .|..+|-+.++.
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~--G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~ 124 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDND--GNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTAT 124 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCc--cccceEEEecCCCCCCCCceECcccccCCCccccce
Confidence 456799999999988654433333334444899999999764 335677888876 6798875 489999999988
Q ss_pred EE-CCEEEEEeCCCCCCCCceEEEEeCCC-----CeEEEccC----CCCCCcceEEEEECCEEEEEccCCCCcccCeEEE
Q psy10286 553 AL-NDKLYVCGGYDGVSSLNTVECYEPDK-----DQWRIVKS----MQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 553 ~~-~~~iyv~GG~~~~~~~~~~~~yd~~~-----~~W~~~~~----~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
.+ ||+++|+||... ...+.+.+.. ..|..+.. .+...+-+....-+|+||+++.. ....
T Consensus 125 ~L~DG~vlIvGG~~~----~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~-------~s~i 193 (243)
T PF07250_consen 125 TLPDGRVLIVGGSNN----PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANR-------GSII 193 (243)
T ss_pred ECCCCCEEEEeCcCC----CcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcC-------CcEE
Confidence 88 899999999762 2233333321 12322322 12222333444459999999985 5678
Q ss_pred EECCCCcE-EEccCCCC
Q psy10286 623 YDPKTDEW-TSVKPMLT 638 (748)
Q Consensus 623 yd~~~~~W-~~~~~~p~ 638 (748)
||+.++++ ..++.+|.
T Consensus 194 ~d~~~n~v~~~lP~lPg 210 (243)
T PF07250_consen 194 YDYKTNTVVRTLPDLPG 210 (243)
T ss_pred EeCCCCeEEeeCCCCCC
Confidence 89999987 67887774
No 59
>KOG2838|consensus
Probab=98.44 E-value=1.1e-07 Score=89.84 Aligned_cols=128 Identities=20% Similarity=0.290 Sum_probs=86.5
Q ss_pred HHHHHHHHHhcCCcccEEEE-E-CC--------------eEEeeeeeeeeccCHHHHHhhccccccccccee-eeecchh
Q psy10286 61 GFPVMEEIRRQGKLCDVTIK-V-DD--------------QSFTCHRIVLAATIPYFQAMFTSDMAESKQREI-TMQGIDA 123 (748)
Q Consensus 61 ~~~~l~~l~~~~~~~Dv~i~-~-~~--------------~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~-~~~~~~~ 123 (748)
|-++++.++++...-|+.|. + +| .+++|||+|.++||++||.++.+..++.....- ++..
T Consensus 222 Ld~Dmkglfd~~c~~d~li~~ssD~elveafggeeNc~deeikahkai~aaRS~ffRnLL~RkiregeE~sdrtlr~--- 298 (401)
T KOG2838|consen 222 LDEDMKGLFDQDCKHDDLIIESSDGELVEAFGGEENCEDEEIKAHKAIAAARSKFFRNLLLRKIREGEEGSDRTLRR--- 298 (401)
T ss_pred hhHHHHHHHHhhcccCcEEEEeccchhhhhcCCcccchhHHHHHHHHHHHhhhHHHHHHHHHHhhcccccccccccC---
Confidence 34456777777755555543 3 22 479999999999999999999886665432211 1111
Q ss_pred eehhhccccccccccccccccccceeeeecCCCHHHH-HHHHHhhhceeEEe----------------------------
Q psy10286 124 VIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAM-EALINFVYSGRVTI---------------------------- 174 (748)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~l~flYtg~~~i---------------------------- 174 (748)
+...|-..-|=|.+| ..+|+++||+.+++
T Consensus 299 ----------------------PkRIifdE~I~PkafA~i~lhclYTD~lDlSl~hkce~SigSLSeakAitnaGkpn~~ 356 (401)
T KOG2838|consen 299 ----------------------PKRIIFDELIFPKAFAPIFLHCLYTDRLDLSLAHKCEDSIGSLSEAKAITNAGKPNDL 356 (401)
T ss_pred ----------------------CceeechhhhcchhhhhhhhhhheecccchhhcccCCcccccHHHHHHHHcCCCCchh
Confidence 111111123444444 67899999998872
Q ss_pred echhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccc
Q psy10286 175 HSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLD 213 (748)
Q Consensus 175 ~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~ 213 (748)
..+..++|+.+|-+|++..|.++|++.+...+..++..+
T Consensus 357 qaaeAleL~~IAlFfEfemLaQa~e~Vir~acaadlsn~ 395 (401)
T KOG2838|consen 357 QAAEALELIEIALFFEFEMLAQACEDVIRKACAADLSNG 395 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 223478899999999999999999999988776665444
No 60
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.33 E-value=0.00011 Score=73.26 Aligned_cols=195 Identities=11% Similarity=0.102 Sum_probs=110.7
Q ss_pred ceEEEEeCCCCceEEccCCCcccc---e--eEEEEE---CC-EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCC-c
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRS---R--VGVAVM---KN-RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFK-R 546 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~---~--~~~~~~---~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~-r 546 (748)
..+..+||.|++|..+++.+.++. . .+.... +. +|..++...+......+++|+..+++|+.+...+.. .
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~~~~~~~Vys~~~~~Wr~~~~~~~~~~ 93 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNRNQSEHQVYTLGSNSWRTIECSPPHHP 93 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCCCCccEEEEEeCCCCccccccCCCCcc
Confidence 356667777777777765433211 0 111110 11 333333221112335789999999999998643321 1
Q ss_pred ceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCC----cceEEEEECCEEEEEccCCCCcccCeEEE
Q psy10286 547 SAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHR----SAGGVIAFDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 547 ~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r----~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
.....+.++|.+|-+...........+..||..+++|+..-++|..+ .....+.++|++.++....... .-++|.
T Consensus 94 ~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~-~~~IWv 172 (230)
T TIGR01640 94 LKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFIPLPCGNSDSVDYLSLINYKGKLAVLKQKKDTN-NFDLWV 172 (230)
T ss_pred ccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeeeecCccccccccceEEEEECCEEEEEEecCCCC-cEEEEE
Confidence 12226678999998875332222237899999999999522344333 2346677899999887643211 246888
Q ss_pred EE-CCCCcEEEccCCC---CCCc----ceeEEEECCEEEEEeccCCCccccEEEEEeCCCC
Q psy10286 623 YD-PKTDEWTSVKPML---TKRC----RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITD 675 (748)
Q Consensus 623 yd-~~~~~W~~~~~~p---~~r~----~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 675 (748)
.+ -....|++.-..+ .++. ....+..+++|++..+.. ...-+..||++++
T Consensus 173 l~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g~I~~~~~~~---~~~~~~~y~~~~~ 230 (230)
T TIGR01640 173 LNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKGEIVLCCEDE---NPFYIFYYNVGEN 230 (230)
T ss_pred ECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCCEEEEEeCCC---CceEEEEEeccCC
Confidence 75 4456798753222 1111 123445578888877531 1123888998875
No 61
>PF13854 Kelch_5: Kelch motif
Probab=98.29 E-value=1.6e-06 Score=59.96 Aligned_cols=40 Identities=23% Similarity=0.340 Sum_probs=35.4
Q ss_pred CCCCcceeEEEEECCEEEEEeCCCC--CCCCceEEEEeCCCC
Q psy10286 542 MCFKRSAVGAAALNDKLYVCGGYDG--VSSLNTVECYEPDKD 581 (748)
Q Consensus 542 ~~~~r~~~~~~~~~~~iyv~GG~~~--~~~~~~~~~yd~~~~ 581 (748)
+|.+|.+|++++++++||++||.++ ...++++|+||..+.
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 567899999998763
No 62
>PF13854 Kelch_5: Kelch motif
Probab=98.28 E-value=1.8e-06 Score=59.72 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=35.3
Q ss_pred CCCCCcceEEEEECCEEEEEeCCCC--CCCCCeEEEEeCCCC
Q psy10286 683 MNVMRSRVALVANMGKLWAIGGYDG--VSNLPTVEVYDPSTD 722 (748)
Q Consensus 683 ~p~~r~~~~~~~~~~~l~v~GG~~~--~~~~~~v~~yd~~~~ 722 (748)
+|.+|.+|+++.++++|||+||.+. +...+++|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 4889999999999999999999984 557789999998764
No 63
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.12 E-value=0.0068 Score=65.75 Aligned_cols=256 Identities=16% Similarity=0.167 Sum_probs=147.2
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCC--ceeecccc-----------cccceEEecccccccCCCccceEEEEeCCC
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVG--RWQMAEEE-----------TLSNAVISTKSCLTKAGDSLSTVEVFDPLV 486 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~--~W~~~~~~-----------~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~ 486 (748)
.+++||+.+.. ..+.++|..++ .|..-... ......+..++.++.. .....++.+|..+
T Consensus 68 ~~~~vy~~~~~-------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~-~~~g~l~ald~~t 139 (394)
T PRK11138 68 AYNKVYAADRA-------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIG-SEKGQVYALNAED 139 (394)
T ss_pred ECCEEEEECCC-------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEE-cCCCEEEEEECCC
Confidence 57788887542 25788887644 47643221 1111122233333332 2234689999987
Q ss_pred Cc--eEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCC--CcceeEEEEECCEEEE
Q psy10286 487 GR--WQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCF--KRSAVGAAALNDKLYV 560 (748)
Q Consensus 487 ~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv 560 (748)
++ |+.-.+- . ...+-++.++.+|+..+ ...++.+|+.+.+ |+.-...|. .+...+-++.++.+|+
T Consensus 140 G~~~W~~~~~~--~-~~ssP~v~~~~v~v~~~------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~ 210 (394)
T PRK11138 140 GEVAWQTKVAG--E-ALSRPVVSDGLVLVHTS------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIV 210 (394)
T ss_pred CCCcccccCCC--c-eecCCEEECCEEEEECC------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEE
Confidence 74 8654221 1 11223455888887543 2368999998775 876543221 1222233445777776
Q ss_pred EeCCCCCCCCceEEEEeCCCCe--EEEccCCCCC--------CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc-
Q psy10286 561 CGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKH--------RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE- 629 (748)
Q Consensus 561 ~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~- 629 (748)
.++ + ..+..+|+.+.+ |+.....|.. ....+-++.++.+|+.+.. ..++++|+.+.+
T Consensus 211 ~~~-~-----g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~------g~l~ald~~tG~~ 278 (394)
T PRK11138 211 GGD-N-----GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYN------GNLVALDLRSGQI 278 (394)
T ss_pred EcC-C-----CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcC------CeEEEEECCCCCE
Confidence 443 2 357788887764 8653222211 1123445678999986532 369999998764
Q ss_pred -EEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEECCEEEEEeCCC
Q psy10286 630 -WTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVANMGKLWAIGGYD 706 (748)
Q Consensus 630 -W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 706 (748)
|+.-- ... ...+..+++||+... ...++.+|+++.+ |+.-. ...+...+.++.+++||+... +
T Consensus 279 ~W~~~~--~~~---~~~~~~~~~vy~~~~------~g~l~ald~~tG~~~W~~~~--~~~~~~~sp~v~~g~l~v~~~-~ 344 (394)
T PRK11138 279 VWKREY--GSV---NDFAVDGGRIYLVDQ------NDRVYALDTRGGVELWSQSD--LLHRLLTAPVLYNGYLVVGDS-E 344 (394)
T ss_pred EEeecC--CCc---cCcEEECCEEEEEcC------CCeEEEEECCCCcEEEcccc--cCCCcccCCEEECCEEEEEeC-C
Confidence 87531 111 234567899998764 2478999988764 86421 112333445567899987532 1
Q ss_pred CCCCCCeEEEEeCCCCc
Q psy10286 707 GVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 707 ~~~~~~~v~~yd~~~~~ 723 (748)
..++++|+.+++
T Consensus 345 -----G~l~~ld~~tG~ 356 (394)
T PRK11138 345 -----GYLHWINREDGR 356 (394)
T ss_pred -----CEEEEEECCCCC
Confidence 258889988875
No 64
>KOG4350|consensus
Probab=98.05 E-value=7.4e-06 Score=82.07 Aligned_cols=143 Identities=15% Similarity=0.180 Sum_probs=110.4
Q ss_pred hhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHH
Q psy10286 177 QNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQK 256 (748)
Q Consensus 177 ~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~ 256 (748)
+.+.+.|.+|+.|++.+|..+..+||++-|..+|.+-++..|..+.+.+|.+|+.- +...|+.+|+....|..|.+
T Consensus 116 d~lld~LslAh~Ygf~~Le~aiSeYl~~iL~~~NvCmifdaA~ly~l~~Lt~~C~m----fmDrnA~~lL~~~sFn~LSk 191 (620)
T KOG4350|consen 116 DILLDYLSLAHRYGFIQLETAISEYLKEILKNENVCMIFDAAYLYQLTDLTDYCMM----FMDRNADQLLEDPSFNRLSK 191 (620)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHcccceeeeeeHHHHhcchHHHHHHHH----HHhcCHHhhhcCcchhhhhH
Confidence 44556788999999999999999999999999999999888888888888888753 67788888887777766532
Q ss_pred HHHHHHHHHhhcCCCCCcchHHHHHhhcCc-hHHHHHHHHHHHH----hhhhhccCcccccCCHHhHhcccccCCcCCCC
Q psy10286 257 VADACADFLKKRFHPNNVLGIRQFADTLNC-LQLSEAADKYVQQ----YFHEVSMSDEFIGLGVNEVNDIVKRSELHLMS 331 (748)
Q Consensus 257 l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~-~~l~~~~~~~i~~----~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~ 331 (748)
+.+.+++.-...... .+++.++..|-+. ++..+++-++++.++..+|...+....|. +
T Consensus 192 ---------------~sL~e~l~RDsFfApE~~IFlAv~~W~~~Nske~~k~~~~~VRLPLm~lteLLnvVRPsGll--s 254 (620)
T KOG4350|consen 192 ---------------DSLKELLARDSFFAPELKIFLAVRSWHQNNSKEASKVLLELVRLPLMTLTELLNVVRPSGLL--S 254 (620)
T ss_pred ---------------HHHHHHHhhhcccchHHHHHHHHHHHHhcCchhhHHHHHHHHhhhhccHHHHHhccCcccCc--C
Confidence 111122221222222 3788999999874 47778889999999999999999988875 7
Q ss_pred hHHHHHHHH
Q psy10286 332 EEQVFEAVM 340 (748)
Q Consensus 332 E~~v~~~v~ 340 (748)
.+.+++|+.
T Consensus 255 pD~iLDAI~ 263 (620)
T KOG4350|consen 255 PDTILDAIE 263 (620)
T ss_pred HHHHHHHHH
Confidence 788888875
No 65
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.04 E-value=0.015 Score=62.70 Aligned_cols=256 Identities=18% Similarity=0.218 Sum_probs=144.3
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCCc--eeecccccccceEEecccccccCCCccceEEEEeCCCCc--eEEccCC
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVGR--WQMAEEETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGR--WQMAEAM 495 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~--W~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~--W~~~~~~ 495 (748)
.++.+|+.+.. ..+.+||+.+++ |...-......+.+..++.++..+ ....++.+|..+++ |+.-..-
T Consensus 64 ~~~~v~v~~~~-------g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~~~~v~v~~-~~g~l~ald~~tG~~~W~~~~~~ 135 (377)
T TIGR03300 64 AGGKVYAADAD-------GTVVALDAETGKRLWRVDLDERLSGGVGADGGLVFVGT-EKGEVIALDAEDGKELWRAKLSS 135 (377)
T ss_pred ECCEEEEECCC-------CeEEEEEccCCcEeeeecCCCCcccceEEcCCEEEEEc-CCCEEEEEECCCCcEeeeeccCc
Confidence 46667765432 358999987665 765433333333333344444332 23578999988765 8654221
Q ss_pred CcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCC--CcceeEEEEECCEEEEEeCCCCCCCCc
Q psy10286 496 SMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCF--KRSAVGAAALNDKLYVCGGYDGVSSLN 571 (748)
Q Consensus 496 ~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~ 571 (748)
. ...+.++.++.+|+..+ ...++.+|+.+.+ |+.....+. .+...+.+..++.+|+ |..+ .
T Consensus 136 --~-~~~~p~v~~~~v~v~~~------~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v~~-~~~~-----g 200 (377)
T TIGR03300 136 --E-VLSPPLVANGLVVVRTN------DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGVLV-GFAG-----G 200 (377)
T ss_pred --e-eecCCEEECCEEEEECC------CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEEEE-ECCC-----C
Confidence 1 11223445778877543 2468999998764 875433221 1222334555776654 4322 3
Q ss_pred eEEEEeCCCC--eEEEccCCCCCC--------cceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEccCCCCC
Q psy10286 572 TVECYEPDKD--QWRIVKSMQKHR--------SAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVKPMLTK 639 (748)
Q Consensus 572 ~~~~yd~~~~--~W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~ 639 (748)
.+..+|+.++ .|+.-...+... ...+.++.++.+|+.+.. ..+++||+++.+ |+.-.
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG~~~W~~~~----- 269 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSGRVLWKRDA----- 269 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCCcEEEeecc-----
Confidence 6888998776 486542222111 123344568888886532 369999988764 76531
Q ss_pred CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCC--cEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEE
Q psy10286 640 RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITD--EWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVY 717 (748)
Q Consensus 640 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~y 717 (748)
....+.+..++++|+... ...++++|..+. .|+.-. +. .+...+.+..++.||+.. .+ ..++++
T Consensus 270 ~~~~~p~~~~~~vyv~~~------~G~l~~~d~~tG~~~W~~~~-~~-~~~~ssp~i~g~~l~~~~-~~-----G~l~~~ 335 (377)
T TIGR03300 270 SSYQGPAVDDNRLYVTDA------DGVVVALDRRSGSELWKNDE-LK-YRQLTAPAVVGGYLVVGD-FE-----GYLHWL 335 (377)
T ss_pred CCccCceEeCCEEEEECC------CCeEEEEECCCCcEEEcccc-cc-CCccccCEEECCEEEEEe-CC-----CEEEEE
Confidence 112334556889988753 247899998776 476521 11 122233345678887753 22 258889
Q ss_pred eCCCCc
Q psy10286 718 DPSTDS 723 (748)
Q Consensus 718 d~~~~~ 723 (748)
|+.+++
T Consensus 336 d~~tG~ 341 (377)
T TIGR03300 336 SREDGS 341 (377)
T ss_pred ECCCCC
Confidence 987764
No 66
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.02 E-value=0.0011 Score=64.14 Aligned_cols=190 Identities=15% Similarity=0.106 Sum_probs=107.4
Q ss_pred EEEEEccCCCCCC-CCeEEEEECC--C-Ce-----E---EEccCCCCCcceeEEEEE--CC--EEEEEeCCC----CC--
Q psy10286 510 RLYAFGGYNGSER-LSTVEEFDPV--R-RV-----W---NKVSPMCFKRSAVGAAAL--ND--KLYVCGGYD----GV-- 567 (748)
Q Consensus 510 ~iyv~GG~~~~~~-~~~v~~yd~~--t-~~-----W---~~~~~~~~~r~~~~~~~~--~~--~iyv~GG~~----~~-- 567 (748)
.-++.||++.++. .+.++..... . |+ . ..+..+|.+|++|++.++ .| -..+|||.. +.
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 3456688875544 3455554433 2 22 1 234789999999999887 23 477889964 11
Q ss_pred --------CCCceEEEEeCCCCeEEE--ccCCCCCCcceEEEEECCEEEEEccCC--CCcccCeEEEEECCCC---cEEE
Q psy10286 568 --------SSLNTVECYEPDKDQWRI--VKSMQKHRSAGGVIAFDSYVYALGGHD--GLSIFDSVERYDPKTD---EWTS 632 (748)
Q Consensus 568 --------~~~~~~~~yd~~~~~W~~--~~~~~~~r~~~~~~~~~~~iyv~GG~~--~~~~~~~~~~yd~~~~---~W~~ 632 (748)
.....|+..|++-+-.+. ++.+......|.+..-++.+|++||.. .+.+...+++...+-- -+-.
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vs 199 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVS 199 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeE
Confidence 123556777877776543 456667788899999999999999973 3334455665543211 1111
Q ss_pred ccCCCCCCcceeEEEE---CCEEEEEeccCCCc--c---------ccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCE
Q psy10286 633 VKPMLTKRCRLGVAAL---NNKIYVCGGYDGAI--F---------LQSVEMYDPITDEWKMIASMNVMRSRVALVANMGK 698 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~--~---------~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~ 698 (748)
..-++...+-.++.+. .+..+|+||+.... . -+.|.+-..+.-.|+. .....|.+++...-+|.
T Consensus 200 C~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~Wt~--dI~hSrtWFGgs~G~G~ 277 (337)
T PF03089_consen 200 CTVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPEWTG--DIKHSRTWFGGSMGKGS 277 (337)
T ss_pred EEECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCCCCC--CcCcCccccccccCCce
Confidence 1122333333333322 35688899985432 1 1123333334445542 34455667666555555
Q ss_pred EEE
Q psy10286 699 LWA 701 (748)
Q Consensus 699 l~v 701 (748)
+++
T Consensus 278 ~Li 280 (337)
T PF03089_consen 278 ALI 280 (337)
T ss_pred EEE
Confidence 444
No 67
>KOG0511|consensus
Probab=98.01 E-value=5e-06 Score=82.58 Aligned_cols=143 Identities=15% Similarity=0.204 Sum_probs=101.2
Q ss_pred eEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCCCHHHHHHH
Q psy10286 84 QSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEAL 163 (748)
Q Consensus 84 ~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~ 163 (748)
.++|||+++++ |+.||+.||.+++.|++.+... ....++.....+++..
T Consensus 301 ~RyP~hla~i~-R~eyfk~mf~g~f~e~s~n~~~------------------------------p~lslp~~~~~vveI~ 349 (516)
T KOG0511|consen 301 DRYPAHLARIL-RVEYFKSMFVGDFIESSVNDTR------------------------------PGLSLPSLADVVVEID 349 (516)
T ss_pred ccccHHHHHHH-HHHHHHHHhccchhhhcCCccc------------------------------cccccchHHHHHHHHH
Confidence 46999999995 7899999999999986532211 1233377888999999
Q ss_pred HHhhhceeEEeechhHHHHHHHHHHhcchhHH---HHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecc
Q psy10286 164 INFVYSGRVTIHSQNVQSLMVVASFLQMQKVA---DACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQ 240 (748)
Q Consensus 164 l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~---~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~ 240 (748)
++|+|+.+.+|..+-+.+++-.|+++.+..-. .+...-+.++
T Consensus 350 lr~lY~d~tdi~~~~A~dvll~ad~lal~~dr~Lkt~as~~itq~----------------------------------- 394 (516)
T KOG0511|consen 350 LRNLYCDQTDIIFDVASDVLLFADKLALADDRLLKTAASAEITQW----------------------------------- 394 (516)
T ss_pred HHHhhcccccchHHHHhhHHHHhhHhhhhhhhhhhhhhhHHHHHH-----------------------------------
Confidence 99999999999999888888888887665311 1111111110
Q ss_pred cHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHhhhhhccCcccccCCHHh
Q psy10286 241 NVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHEVSMSDEFIGLGVNE 317 (748)
Q Consensus 241 ~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~ 317 (748)
.++ ++.=++.+++..+...+...|.+.+..++..|+..++..+++...-...
T Consensus 395 ---------------------~e~----id~y~V~dIl~~~wd~~~~rlEqfa~~~~a~hl~~l~~dPe~~~~~~~s 446 (516)
T KOG0511|consen 395 ---------------------LEL----IDMYGVLDILEYCWDLVACRLEQFAETHEARHLLLLLPDPEGDSSLRTS 446 (516)
T ss_pred ---------------------HHH----HHhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhcCCchhhHHHHhc
Confidence 011 1222456677777777888899999999999999999988886643333
No 68
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.00 E-value=0.0054 Score=66.54 Aligned_cols=242 Identities=14% Similarity=0.159 Sum_probs=138.5
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCC--ceeeccccc-ccceEEecccccccCCCccceEEEEeCCCCc--eEEccC
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVG--RWQMAEEET-LSNAVISTKSCLTKAGDSLSTVEVFDPLVGR--WQMAEA 494 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~--~W~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~--W~~~~~ 494 (748)
.+++||+.+. + ..+.++|..++ .|....... ....++.. +.++.. .....++.+|+.+++ |+.-..
T Consensus 119 ~~~~v~v~~~-~------g~l~ald~~tG~~~W~~~~~~~~~ssP~v~~-~~v~v~-~~~g~l~ald~~tG~~~W~~~~~ 189 (394)
T PRK11138 119 AGGKVYIGSE-K------GQVYALNAEDGEVAWQTKVAGEALSRPVVSD-GLVLVH-TSNGMLQALNESDGAVKWTVNLD 189 (394)
T ss_pred ECCEEEEEcC-C------CEEEEEECCCCCCcccccCCCceecCCEEEC-CEEEEE-CCCCEEEEEEccCCCEeeeecCC
Confidence 4667776432 1 35889998765 686643322 22223332 222222 223468999999886 876543
Q ss_pred CCc--ccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCC-----c---ceeEEEEECCEEEEEe
Q psy10286 495 MSM--LRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFK-----R---SAVGAAALNDKLYVCG 562 (748)
Q Consensus 495 ~~~--~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~-----r---~~~~~~~~~~~iyv~G 562 (748)
.+. .+...+-++.++.+|+.++. ..+..+|+.+.+ |+.-...|.. | ...+-++.++.+|+.+
T Consensus 190 ~~~~~~~~~~sP~v~~~~v~~~~~~------g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~ 263 (394)
T PRK11138 190 VPSLTLRGESAPATAFGGAIVGGDN------GRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA 263 (394)
T ss_pred CCcccccCCCCCEEECCEEEEEcCC------CEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE
Confidence 221 12223334557777775431 357888888764 8643221211 0 1123445689999865
Q ss_pred CCCCCCCCceEEEEeCCCCe--EEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC--cEEEccCCCC
Q psy10286 563 GYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD--EWTSVKPMLT 638 (748)
Q Consensus 563 G~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~ 638 (748)
. + ..++++|+.+++ |+.-- ..+ ...+..++.||+.... ..++++|+.+. .|+.-. ..
T Consensus 264 ~-~-----g~l~ald~~tG~~~W~~~~--~~~---~~~~~~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~--~~ 324 (394)
T PRK11138 264 Y-N-----GNLVALDLRSGQIVWKREY--GSV---NDFAVDGGRIYLVDQN------DRVYALDTRGGVELWSQSD--LL 324 (394)
T ss_pred c-C-----CeEEEEECCCCCEEEeecC--CCc---cCcEEECCEEEEEcCC------CeEEEEECCCCcEEEcccc--cC
Confidence 3 2 368899998765 87632 111 1346678999997642 46999999876 476421 12
Q ss_pred CCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEECCEEEEEe
Q psy10286 639 KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVANMGKLWAIG 703 (748)
Q Consensus 639 ~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~G 703 (748)
.+...+.++.+++||+... + ..++++|+.+.+ |+. .++......+.+..+++|||-.
T Consensus 325 ~~~~~sp~v~~g~l~v~~~-~-----G~l~~ld~~tG~~~~~~--~~~~~~~~s~P~~~~~~l~v~t 383 (394)
T PRK11138 325 HRLLTAPVLYNGYLVVGDS-E-----GYLHWINREDGRFVAQQ--KVDSSGFLSEPVVADDKLLIQA 383 (394)
T ss_pred CCcccCCEEECCEEEEEeC-C-----CEEEEEECCCCCEEEEE--EcCCCcceeCCEEECCEEEEEe
Confidence 2334455667899887543 2 368889988875 543 1122223344566788888874
No 69
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.91 E-value=0.019 Score=57.26 Aligned_cols=206 Identities=17% Similarity=0.198 Sum_probs=120.7
Q ss_pred EEEEeCCCCc--eEEccCCCcccceeE--EEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCCcceeEEE
Q psy10286 479 VEVFDPLVGR--WQMAEAMSMLRSRVG--VAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 479 ~~~yd~~~~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~ 552 (748)
+..+|+.+++ |+.- +.....+.. .+..++.+|+..+ ...++++|+.+++ |+.-. +.+-... ..
T Consensus 5 l~~~d~~tG~~~W~~~--~~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~~~-~~ 73 (238)
T PF13360_consen 5 LSALDPRTGKELWSYD--LGPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPISGA-PV 73 (238)
T ss_dssp EEEEETTTTEEEEEEE--CSSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGGSG-EE
T ss_pred EEEEECCCCCEEEEEE--CCCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--cccccce-ee
Confidence 4556665553 5441 111122223 3446889998743 3579999998876 66543 2222222 46
Q ss_pred EECCEEEEEeCCCCCCCCceEEEEeCCCCe--EE-EccCCCCC--CcceEEEEECCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 553 ALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WR-IVKSMQKH--RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 553 ~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~-~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
..++.+|+..+. +.++.+|..+.+ |+ .....+.. +.....++.++.+|+... ...+..+|+.+
T Consensus 74 ~~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~~t 141 (238)
T PF13360_consen 74 VDGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDPKT 141 (238)
T ss_dssp EETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEETTT
T ss_pred ecccccccccce------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEecCC
Confidence 778999887631 379999977764 98 45443332 233445555778877664 24799999987
Q ss_pred Cc--EEEccCCCCCCc--------ceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEE
Q psy10286 628 DE--WTSVKPMLTKRC--------RLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVAN 695 (748)
Q Consensus 628 ~~--W~~~~~~p~~r~--------~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~ 695 (748)
++ |+.-...+.... ....+..++.+|+.++.. .+..+|..+.+ |+.. ... ........
T Consensus 142 G~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~~--~~~--~~~~~~~~ 211 (238)
T PF13360_consen 142 GKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSKP--ISG--IYSLPSVD 211 (238)
T ss_dssp TEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEEC--SS---ECECEECC
T ss_pred CcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEec--CCC--ccCCceee
Confidence 74 776443332111 133333468888887643 25666999987 8432 211 11224455
Q ss_pred CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 696 MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 696 ~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
++.||+.. . ...++++|+++++
T Consensus 212 ~~~l~~~~-~-----~~~l~~~d~~tG~ 233 (238)
T PF13360_consen 212 GGTLYVTS-S-----DGRLYALDLKTGK 233 (238)
T ss_dssp CTEEEEEE-T-----TTEEEEEETTTTE
T ss_pred CCEEEEEe-C-----CCEEEEEECCCCC
Confidence 78888776 2 2479999999974
No 70
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.90 E-value=0.0006 Score=65.94 Aligned_cols=186 Identities=13% Similarity=0.081 Sum_probs=108.5
Q ss_pred EEEEeCCCCCC-CCceEEEEeCCCCe--------E---EEccCCCCCCcceEEEEE----CCEEEEEccCCCC-------
Q psy10286 558 LYVCGGYDGVS-SLNTVECYEPDKDQ--------W---RIVKSMQKHRSAGGVIAF----DSYVYALGGHDGL------- 614 (748)
Q Consensus 558 iyv~GG~~~~~-~~~~~~~yd~~~~~--------W---~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~------- 614 (748)
-.+.||...+. -..+++.....+.. . ..+.+.|.+|++|++.++ .....+|||..-.
T Consensus 41 YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRTT 120 (337)
T PF03089_consen 41 YLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRTT 120 (337)
T ss_pred EEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccch
Confidence 34558877433 44566665544332 1 234689999999998776 2357889996311
Q ss_pred -------cccCeEEEEECCCCcEEE--ccCCCCCCcceeEEEECCEEEEEeccCCCc--cccEEEEEeCC---CCcEEEc
Q psy10286 615 -------SIFDSVERYDPKTDEWTS--VKPMLTKRCRLGVAALNNKIYVCGGYDGAI--FLQSVEMYDPI---TDEWKMI 680 (748)
Q Consensus 615 -------~~~~~~~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~--~~~~v~~yd~~---~~~W~~~ 680 (748)
.....|+..|++-+-.+. ++.+..+-+.|.+..-++.+|++||+.-.. .-..+++...+ ..-+...
T Consensus 121 enWNsVvDC~P~VfLiDleFGC~tah~lpEl~dG~SFHvslar~D~VYilGGHsl~sd~Rpp~l~rlkVdLllGSP~vsC 200 (337)
T PF03089_consen 121 ENWNSVVDCPPQVFLIDLEFGCCTAHTLPELQDGQSFHVSLARNDCVYILGGHSLESDSRPPRLYRLKVDLLLGSPAVSC 200 (337)
T ss_pred hhcceeccCCCeEEEEeccccccccccchhhcCCeEEEEEEecCceEEEEccEEccCCCCCCcEEEEEEeecCCCceeEE
Confidence 124467788887776653 456667788898888999999999975332 22334433211 1112222
Q ss_pred cCCCCCCcceEEEE--E-CCEEEEEeCCCCCC-----------CCCeEEEEeCCCCceEecCCCCCCCcce------EEE
Q psy10286 681 ASMNVMRSRVALVA--N-MGKLWAIGGYDGVS-----------NLPTVEVYDPSTDSWAFVAPMCAHEGGV------GVG 740 (748)
Q Consensus 681 ~~~p~~r~~~~~~~--~-~~~l~v~GG~~~~~-----------~~~~v~~yd~~~~~W~~~~~~~~~r~~~------~~~ 740 (748)
..++...+-.++.+ . .+..+|+||+..+. ..+.|.+-..++-.|+. ++.++|.++ |.+
T Consensus 201 ~vl~~glSisSAIvt~~~~~e~iIlGGY~sdsQKRm~C~~V~Ldd~~I~ie~~E~P~Wt~--dI~hSrtWFGgs~G~G~~ 278 (337)
T PF03089_consen 201 TVLQGGLSISSAIVTQTGPHEYIILGGYQSDSQKRMECNTVSLDDDGIHIEEREPPEWTG--DIKHSRTWFGGSMGKGSA 278 (337)
T ss_pred EECCCCceEeeeeEeecCCCceEEEecccccceeeeeeeEEEEeCCceEeccCCCCCCCC--CcCcCccccccccCCceE
Confidence 23333443333322 2 46788899986432 12345555556667763 455555554 566
Q ss_pred EeecC
Q psy10286 741 VIPIC 745 (748)
Q Consensus 741 ~~~~~ 745 (748)
++-+|
T Consensus 279 Li~iP 283 (337)
T PF03089_consen 279 LIGIP 283 (337)
T ss_pred EEEEC
Confidence 66555
No 71
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=97.84 E-value=0.02 Score=61.67 Aligned_cols=231 Identities=13% Similarity=0.190 Sum_probs=127.1
Q ss_pred ceEeecCCCCc--eeecccccc-cceEEecccccccCCCccceEEEEeCCCCc--eEEccCCCc--ccceeEEEEECCEE
Q psy10286 439 TVEVFDPLVGR--WQMAEEETL-SNAVISTKSCLTKAGDSLSTVEVFDPLVGR--WQMAEAMSM--LRSRVGVAVMKNRL 511 (748)
Q Consensus 439 ~~~~y~~~~~~--W~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~--W~~~~~~~~--~r~~~~~~~~~~~i 511 (748)
.++++|+.+++ |........ ...++. ++.++.. .....++.+|+.+++ |+.-...+. .+...+.++.++.+
T Consensus 116 ~l~ald~~tG~~~W~~~~~~~~~~~p~v~-~~~v~v~-~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~~~~v 193 (377)
T TIGR03300 116 EVIALDAEDGKELWRAKLSSEVLSPPLVA-NGLVVVR-TNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIADGGV 193 (377)
T ss_pred EEEEEECCCCcEeeeeccCceeecCCEEE-CCEEEEE-CCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEECCEE
Confidence 68899987654 765433222 222222 2222222 223468999998774 765433221 12223345557766
Q ss_pred EEEccCCCCCCCCeEEEEECCCC--eEEEccCCCCCc--------ceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCC
Q psy10286 512 YAFGGYNGSERLSTVEEFDPVRR--VWNKVSPMCFKR--------SAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581 (748)
Q Consensus 512 yv~GG~~~~~~~~~v~~yd~~t~--~W~~~~~~~~~r--------~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 581 (748)
|+ |..+ ..+..+|+.++ .|+.-...+... ...+.+..++.+|+.+.. ..+++||+.++
T Consensus 194 ~~-~~~~-----g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~------g~l~a~d~~tG 261 (377)
T TIGR03300 194 LV-GFAG-----GKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQ------GRVAALDLRSG 261 (377)
T ss_pred EE-ECCC-----CEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcC------CEEEEEECCCC
Confidence 54 4321 36889998876 486532222111 112334458888886532 36889998776
Q ss_pred e--EEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC--cEEEccCCCCCCcceeEEEECCEEEEEec
Q psy10286 582 Q--WRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD--EWTSVKPMLTKRCRLGVAALNNKIYVCGG 657 (748)
Q Consensus 582 ~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~p~~r~~~~~~~~~~~i~v~GG 657 (748)
+ |+.-. + ...+.+..++.+|+.... ..++++|..+. .|+.-. + ..+...+.+..++.||+..
T Consensus 262 ~~~W~~~~--~---~~~~p~~~~~~vyv~~~~------G~l~~~d~~tG~~~W~~~~-~-~~~~~ssp~i~g~~l~~~~- 327 (377)
T TIGR03300 262 RVLWKRDA--S---SYQGPAVDDNRLYVTDAD------GVVVALDRRSGSELWKNDE-L-KYRQLTAPAVVGGYLVVGD- 327 (377)
T ss_pred cEEEeecc--C---CccCceEeCCEEEEECCC------CeEEEEECCCCcEEEcccc-c-cCCccccCEEECCEEEEEe-
Confidence 4 76541 1 123445678999987532 46999998776 476521 1 1122333455678777653
Q ss_pred cCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEECCEEEEEeC
Q psy10286 658 YDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVANMGKLWAIGG 704 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~l~v~GG 704 (748)
.+ ..++++|+.+.+ |+. .++......+.+..+++||+.+.
T Consensus 328 ~~-----G~l~~~d~~tG~~~~~~--~~~~~~~~~sp~~~~~~l~v~~~ 369 (377)
T TIGR03300 328 FE-----GYLHWLSREDGSFVARL--KTDGSGIASPPVVVGDGLLVQTR 369 (377)
T ss_pred CC-----CEEEEEECCCCCEEEEE--EcCCCccccCCEEECCEEEEEeC
Confidence 22 368889987664 432 11222234455677888886653
No 72
>KOG2716|consensus
Probab=97.55 E-value=0.00023 Score=68.16 Aligned_cols=94 Identities=17% Similarity=0.359 Sum_probs=77.8
Q ss_pred EEEEECCeEEeeeeeeeeccCHHHHHhhccccccc--ccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 77 VTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAES--KQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 77 v~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
|.+.|||..|..+|.-|.-...+|++|+..++.-. .+..|. -+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~~d~s~~IF-----------------------------------ID 51 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVEKDESGCIF-----------------------------------ID 51 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccccCCcCcEE-----------------------------------ec
Confidence 56889999999999999999999999998875321 112232 36
Q ss_pred CCHHHHHHHHHhhhceeEEeech--hHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 155 IDAVAMEALINFVYSGRVTIHSQ--NVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~~~i~~~--~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
=+|.-|..+|+||-.|.+.+++. .+.+|++=|.+|.+++|++.|..-+...
T Consensus 52 RSpKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~~ 104 (230)
T KOG2716|consen 52 RSPKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIARL 104 (230)
T ss_pred CChhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhhc
Confidence 68899999999999888876655 6889999999999999999999987764
No 73
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.43 E-value=0.00014 Score=60.79 Aligned_cols=89 Identities=18% Similarity=0.386 Sum_probs=63.7
Q ss_pred EEEEECCeEEeeeeeeee-ccCHHHHHhhccc-ccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 77 VTIKVDDQSFTCHRIVLA-ATIPYFQAMFTSD-MAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 77 v~i~~~~~~~~aHk~iL~-a~S~~F~~~~~~~-~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
|+|.|+|+.|..-+..|. ....+|.+|+.+. .... ......+-| +
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~--------------------------------~~~~~~~fi-D 47 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDY--------------------------------DDDDGEYFI-D 47 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGE--------------------------------ETTTTEEEE-S
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhcccccc--------------------------------CCccceEEe-c
Confidence 689999999999999997 5567899999864 1110 111222222 5
Q ss_pred CCHHHHHHHHHhhhc-eeEEee-chhHHHHHHHHHHhcchhH-HHHH
Q psy10286 155 IDAVAMEALINFVYS-GRVTIH-SQNVQSLMVVASFLQMQKV-ADAC 198 (748)
Q Consensus 155 ~~~~~~~~~l~flYt-g~~~i~-~~~v~~ll~~A~~l~i~~l-~~~c 198 (748)
=+|..|+.+|+|+.+ +.+..+ ...+..+++-|++|+++.+ ++.|
T Consensus 48 Rdp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 48 RDPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp S-HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred cChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence 699999999999999 777765 5579999999999999999 7766
No 74
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=97.30 E-value=0.00024 Score=70.96 Aligned_cols=89 Identities=24% Similarity=0.503 Sum_probs=73.0
Q ss_pred eEEeeeeeeeeccCHHHHHhhcccccc-cccceeeeecchheehhhccccccccccccccccccceeeeecCCCHHHHHH
Q psy10286 84 QSFTCHRIVLAATIPYFQAMFTSDMAE-SKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEA 162 (748)
Q Consensus 84 ~~~~aHk~iL~a~S~~F~~~~~~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (748)
+.|.|.+-+|-.--.||+..+.....+ ...+.+.+. -.-+..+|+-
T Consensus 14 rdF~C~~~lL~~~M~YF~~~l~~~~~~~~~~~~idis---------------------------------VhCDv~iF~W 60 (317)
T PF11822_consen 14 RDFTCPRDLLVSEMRYFAEYLSRYINDSQRWEEIDIS---------------------------------VHCDVHIFEW 60 (317)
T ss_pred eeeeccHHHHHHhhHHHHHHHhhcccccCcCCCcceE---------------------------------EecChhHHHH
Confidence 579999999999999999999652211 111222220 2578899999
Q ss_pred HHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 163 LINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 163 ~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
+++|+......++.+||..++.-|++|||+.|++.|..|+..+
T Consensus 61 Lm~yv~~~~p~l~~~NvvsIliSS~FL~M~~Lve~cl~y~~~~ 103 (317)
T PF11822_consen 61 LMRYVKGEPPSLTPSNVVSILISSEFLQMESLVEECLQYCHDH 103 (317)
T ss_pred HHHHhhcCCCcCCcCcEEEeEehhhhhccHHHHHHHHHHHHHh
Confidence 9999999989999999999999999999999999999999775
No 75
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=97.28 E-value=0.24 Score=49.30 Aligned_cols=174 Identities=20% Similarity=0.269 Sum_probs=105.2
Q ss_pred CeEEEEECCCCe--EEEccCCCCCcceeE--EEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCCCcceE
Q psy10286 524 STVEEFDPVRRV--WNKVSPMCFKRSAVG--AAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHRSAGG 597 (748)
Q Consensus 524 ~~v~~yd~~t~~--W~~~~~~~~~r~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~ 597 (748)
..+..+|+.+++ |+.-- ..+..... .+..++++|+..+ -..++++|+.+++ |+.-. +.+-. ..
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~~~~~~~~~~~~~~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~--~~~~~-~~ 71 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--GPGIGGPVATAVPDGGRVYVASG------DGNLYALDAKTGKVLWRFDL--PGPIS-GA 71 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--SSSCSSEEETEEEETTEEEEEET------TSEEEEEETTTSEEEEEEEC--SSCGG-SG
T ss_pred CEEEEEECCCCCEEEEEEC--CCCCCCccceEEEeCCEEEEEcC------CCEEEEEECCCCCEEEEeec--ccccc-ce
Confidence 357788887765 76622 11223333 3447899998843 2689999998776 76654 22212 22
Q ss_pred EEEECCEEEEEccCCCCcccCeEEEEECCCC--cEE-EccCCCCC--CcceeEEEECCEEEEEeccCCCccccEEEEEeC
Q psy10286 598 VIAFDSYVYALGGHDGLSIFDSVERYDPKTD--EWT-SVKPMLTK--RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDP 672 (748)
Q Consensus 598 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~-~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~ 672 (748)
.+..++.+|+..+. +.++.+|..+. .|+ .....+.. +........++.+|+... ...++.+|+
T Consensus 72 ~~~~~~~v~v~~~~------~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~g~l~~~d~ 139 (238)
T PF13360_consen 72 PVVDGGRVYVGTSD------GSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS------SGKLVALDP 139 (238)
T ss_dssp EEEETTEEEEEETT------SEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET------CSEEEEEET
T ss_pred eeecccccccccce------eeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec------cCcEEEEec
Confidence 47789999888742 37999997766 488 44332322 233344445777777663 258999999
Q ss_pred CCCc--EEEccCCCCCC--------cceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc--eEe
Q psy10286 673 ITDE--WKMIASMNVMR--------SRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS--WAF 726 (748)
Q Consensus 673 ~~~~--W~~~~~~p~~r--------~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 726 (748)
++.+ |..-...+... .....+..++.+|+.++.. .+..+|..++. |+.
T Consensus 140 ~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~g------~~~~~d~~tg~~~w~~ 199 (238)
T PF13360_consen 140 KTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDGRVYVSSGDG------RVVAVDLATGEKLWSK 199 (238)
T ss_dssp TTTEEEEEEESSTT-SS--EEEETTEEEEEECCTTEEEEECCTS------SEEEEETTTTEEEEEE
T ss_pred CCCcEEEEeecCCCCCCcceeeecccccceEEECCEEEEEcCCC------eEEEEECCCCCEEEEe
Confidence 8765 77643333221 1233444568888887632 25666999987 843
No 76
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=97.26 E-value=0.1 Score=52.37 Aligned_cols=200 Identities=19% Similarity=0.208 Sum_probs=110.3
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC-----CCCcc
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM-----CFKRS 547 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-----~~~r~ 547 (748)
....++++|+.++.-...... . -.+++.. ++.+|+..+ .....+|+.+++++.+... +..+.
T Consensus 20 ~~~~i~~~~~~~~~~~~~~~~-~---~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ 88 (246)
T PF08450_consen 20 PGGRIYRVDPDTGEVEVIDLP-G---PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTVLADLPDGGVPFNRP 88 (246)
T ss_dssp TTTEEEEEETTTTEEEEEESS-S---EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEEEEEEETTCSCTEEE
T ss_pred CCCEEEEEECCCCeEEEEecC-C---CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEEEeeccCCCcccCCC
Confidence 346799999998876543322 2 3344444 788888765 2356679999999887654 23334
Q ss_pred eeEEEEECCEEEEEeCCC-CCCCC--ceEEEEeCCCCeEEEcc-CCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEE
Q psy10286 548 AVGAAALNDKLYVCGGYD-GVSSL--NTVECYEPDKDQWRIVK-SMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 548 ~~~~~~~~~~iyv~GG~~-~~~~~--~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 621 (748)
+-.++.-+|.+|+-.-.. ..... ..++++++. .+.+.+. .+..| .+++.. ++.+|+.--. ...++
T Consensus 89 ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~p---NGi~~s~dg~~lyv~ds~-----~~~i~ 159 (246)
T PF08450_consen 89 NDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFP---NGIAFSPDGKTLYVADSF-----NGRIW 159 (246)
T ss_dssp EEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSE---EEEEEETTSSEEEEEETT-----TTEEE
T ss_pred ceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccc---cceEECCcchheeecccc-----cceeE
Confidence 434444488888753222 11112 579999999 6655553 22222 233333 3467775433 35699
Q ss_pred EEECCCCc--EEEc---cCCCCCC-cceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE
Q psy10286 622 RYDPKTDE--WTSV---KPMLTKR-CRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA 694 (748)
Q Consensus 622 ~yd~~~~~--W~~~---~~~p~~r-~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~ 694 (748)
+|++.... +... ..++... .--++++- +|.||+..-. .+.|++||++...-..+. +|.+ ..+.+.
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-----~~~I~~~~p~G~~~~~i~-~p~~--~~t~~~ 231 (246)
T PF08450_consen 160 RFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-----GGRIVVFDPDGKLLREIE-LPVP--RPTNCA 231 (246)
T ss_dssp EEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET-----TTEEEEEETTSCEEEEEE--SSS--SEEEEE
T ss_pred EEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC-----CCEEEEECCCccEEEEEc-CCCC--CEEEEE
Confidence 99986433 4322 2222222 22334443 6889997321 268999999955454443 4433 233333
Q ss_pred E----CCEEEEE
Q psy10286 695 N----MGKLWAI 702 (748)
Q Consensus 695 ~----~~~l~v~ 702 (748)
+ .++|||.
T Consensus 232 fgg~~~~~L~vT 243 (246)
T PF08450_consen 232 FGGPDGKTLYVT 243 (246)
T ss_dssp EESTTSSEEEEE
T ss_pred EECCCCCEEEEE
Confidence 3 2567775
No 77
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.24 E-value=0.011 Score=62.32 Aligned_cols=118 Identities=11% Similarity=0.118 Sum_probs=82.8
Q ss_pred ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccc-----cEEEEE--e--
Q psy10286 601 FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFL-----QSVEMY--D-- 671 (748)
Q Consensus 601 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~-----~~v~~y--d-- 671 (748)
.+.+|+.+++. .....||+++..-...+.++.+.....++.++++||++......... ..++.+ +
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 58899998765 34889999999988888877776666777889999999875432211 145554 3
Q ss_pred ------CCCCcEEEccCCCCCCc-------ceEEEEE-CCEEEE-EeCCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 672 ------PITDEWKMIASMNVMRS-------RVALVAN-MGKLWA-IGGYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 672 ------~~~~~W~~~~~~p~~r~-------~~~~~~~-~~~l~v-~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
...-.|..+++.|..+. -.+-+++ +..|+| .-|.. ..++.||..+.+|+.+++
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccc
Confidence 23346888887665433 2334455 778888 54422 358999999999999877
No 78
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=97.23 E-value=0.00013 Score=63.26 Aligned_cols=50 Identities=34% Similarity=0.678 Sum_probs=45.4
Q ss_pred hhhHHHHHHHhhcceeEEEe-cccHHHHHHHhhhcCcHHHHHHHHHHHhhc
Q psy10286 219 SCRAMEALINFAYSGRVTIH-SQNVQSLMVVASFLQMQKVADACADFLKKR 268 (748)
Q Consensus 219 ~~~~~~~ll~~~y~~~~~~~-~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~ 268 (748)
+...++.+++|+|++.+.+. .+++.+++..|+.|+++.|++.|+++|.++
T Consensus 60 ~~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~L~~~~~~~l~~~ 110 (111)
T PF00651_consen 60 SPEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPELKKACEKFLQES 110 (111)
T ss_dssp CHHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhC
Confidence 34567779999999999998 999999999999999999999999999753
No 79
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=97.23 E-value=0.034 Score=58.52 Aligned_cols=123 Identities=15% Similarity=0.178 Sum_probs=84.0
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCccc-----CeEEE--EE--
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIF-----DSVER--YD-- 624 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~-----~~~~~--yd-- 624 (748)
.+++|+.+++. .....||+.+..-...+.++.+.....++.++++||++......... ..++. |+
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~ 148 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPP 148 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccc
Confidence 58899988664 34889999999988888887777777777789999999886322111 13344 34
Q ss_pred ------CCCCcEEEccCCCCCCc-------ceeEEEE-CCEEEE-EeccCCCccccEEEEEeCCCCcEEEccCCCCCC
Q psy10286 625 ------PKTDEWTSVKPMLTKRC-------RLGVAAL-NNKIYV-CGGYDGAIFLQSVEMYDPITDEWKMIASMNVMR 687 (748)
Q Consensus 625 ------~~~~~W~~~~~~p~~r~-------~~~~~~~-~~~i~v-~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r 687 (748)
...-.|+.+++.|..+. -.+.+++ +..|+| +-|.. ...+.||..+.+|+.++....|-
T Consensus 149 ~~~~~~~~~w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~-----~GTysfDt~~~~W~~~GdW~LPF 221 (342)
T PF07893_consen 149 PDDPSPEESWSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR-----WGTYSFDTESHEWRKHGDWMLPF 221 (342)
T ss_pred cccccCCCcceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCc-----eEEEEEEcCCcceeeccceecCc
Confidence 22346888876554433 2344555 667888 44321 24899999999999998754443
No 80
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=97.19 E-value=0.00036 Score=59.50 Aligned_cols=93 Identities=22% Similarity=0.314 Sum_probs=64.0
Q ss_pred HHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHH
Q psy10286 180 QSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVAD 259 (748)
Q Consensus 180 ~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~ 259 (748)
.+++..|..+++++|.+.|.+|+.. |+.++....++++++. +
T Consensus 2 ~~i~~~A~~~~~~~L~~~~~~~i~~------------------------------------nf~~v~~~~~f~~L~~--~ 43 (103)
T PF07707_consen 2 LSIYRLAEKYGLEELAEACLRFIAK------------------------------------NFNEVSKSDEFLELPF--D 43 (103)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHH------------------------------------THHHHTTSHHHHCS-H--H
T ss_pred hhHHHHHHHcChHHHHHHHHHHHHH------------------------------------HHHHHccchhhhcCCH--H
Confidence 4678899999999999999999887 4556666666666642 1
Q ss_pred HHHHHHhhcCCCCCcchHHHHHhh--cCchHHHHHHHHHHHH-------hhhhhccCcccccCCHHhHhcccc
Q psy10286 260 ACADFLKKRFHPNNVLGIRQFADT--LNCLQLSEAADKYVQQ-------YFHEVSMSDEFIGLGVNEVNDIVK 323 (748)
Q Consensus 260 ~c~~~l~~~l~~~n~~~i~~~a~~--~~~~~l~~~~~~~i~~-------~~~~l~~~~~f~~L~~~~l~~il~ 323 (748)
.....|. ..+. .+..++++++++|+.+ ++.++++..+|..|+.+.|.+.++
T Consensus 44 ~l~~iL~-------------~~~l~v~~E~~v~~av~~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~L~~~v~ 103 (103)
T PF07707_consen 44 QLIEILS-------------SDDLNVSSEDDVFEAVLRWLKHNPENREEHLKELLSCIRFPLLSPEELQNVVE 103 (103)
T ss_dssp HHHHHHH-------------TSS--ECTCCCHHHHHHHHHHCTHHHHTTTHHHHHCCCHHHCT-HHHHHHCCT
T ss_pred HHHHHHh-------------ccccccccHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCCcccCCHHHHHHHHC
Confidence 1112222 1111 1345899999999974 477899999999999999987763
No 81
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=96.92 E-value=0.63 Score=47.80 Aligned_cols=254 Identities=15% Similarity=0.056 Sum_probs=115.8
Q ss_pred ceEeecCCCCceeeccc--ccccceEEeccc-ccccCCCccceEEEEeCCCCceEE-ccCCCcccceeEEEEE--CCEEE
Q psy10286 439 TVEVFDPLVGRWQMAEE--ETLSNAVISTKS-CLTKAGDSLSTVEVFDPLVGRWQM-AEAMSMLRSRVGVAVM--KNRLY 512 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~~--~~~~~~~~~~~~-~~~~~g~~~~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~--~~~iy 512 (748)
.+..||+.+++-...-. .......+..++ .++..+.....+..||..+++... ++....+ ..++.. ++.+|
T Consensus 12 ~v~~~d~~t~~~~~~~~~~~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~---~~~~~~~~g~~l~ 88 (300)
T TIGR03866 12 TISVIDTATLEVTRTFPVGQRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP---ELFALHPNGKILY 88 (300)
T ss_pred EEEEEECCCCceEEEEECCCCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc---cEEEECCCCCEEE
Confidence 57777776655322211 111112222332 233333344678899998877644 2221122 122222 44577
Q ss_pred EEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCC
Q psy10286 513 AFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591 (748)
Q Consensus 513 v~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 591 (748)
+.++.+ ..+..||+.+.+-. ..++......+++. -++.+++++..++ +.+..||..+.+-.......
T Consensus 89 ~~~~~~-----~~l~~~d~~~~~~~--~~~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~~~~~~~~- 156 (300)
T TIGR03866 89 IANEDD-----NLVTVIDIETRKVL--AEIPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEIVDNVLVD- 156 (300)
T ss_pred EEcCCC-----CeEEEEECCCCeEE--eEeeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeEEEEEEcC-
Confidence 765422 36889999876422 22221111223333 3677777765331 24556787665432211111
Q ss_pred CCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEE-cc----CCC-CCCcceeEEEE-CC-EEEEEeccCCCcc
Q psy10286 592 HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS-VK----PML-TKRCRLGVAAL-NN-KIYVCGGYDGAIF 663 (748)
Q Consensus 592 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~-~~----~~p-~~r~~~~~~~~-~~-~i~v~GG~~~~~~ 663 (748)
.+..+....-++..+++++.. ...+..||..+.+... +. ..+ ......+.+.. ++ .+|+..+.
T Consensus 157 ~~~~~~~~s~dg~~l~~~~~~----~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~----- 227 (300)
T TIGR03866 157 QRPRFAEFTADGKELWVSSEI----GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGP----- 227 (300)
T ss_pred CCccEEEECCCCCEEEEEcCC----CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCC-----
Confidence 111222223345444344321 1358889988765422 11 111 11111222222 33 45554432
Q ss_pred ccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCE-EEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 664 LQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGK-LWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~-l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
.+.+.+||..+. +.+........-.++... +++ ||+.++.+ .++.+||..+.+
T Consensus 228 ~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~-----~~i~v~d~~~~~ 282 (300)
T TIGR03866 228 ANRVAVVDAKTY--EVLDYLLVGQRVWQLAFTPDEKYLLTTNGVS-----NDVSVIDVAALK 282 (300)
T ss_pred CCeEEEEECCCC--cEEEEEEeCCCcceEEECCCCCEEEEEcCCC-----CeEEEEECCCCc
Confidence 246889998654 333222222222223222 444 44433322 369999998755
No 82
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=96.77 E-value=0.33 Score=48.71 Aligned_cols=194 Identities=20% Similarity=0.225 Sum_probs=109.5
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 585 (748)
++.+|+..- ....++++|+.+++-....... ..+++.. ++.+|+..+ .....+|+.+++++.
T Consensus 11 ~g~l~~~D~-----~~~~i~~~~~~~~~~~~~~~~~----~~G~~~~~~~g~l~v~~~-------~~~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 11 DGRLYWVDI-----PGGRIYRVDPDTGEVEVIDLPG----PNGMAFDRPDGRLYVADS-------GGIAVVDPDTGKVTV 74 (246)
T ss_dssp TTEEEEEET-----TTTEEEEEETTTTEEEEEESSS----EEEEEEECTTSEEEEEET-------TCEEEEETTTTEEEE
T ss_pred CCEEEEEEc-----CCCEEEEEECCCCeEEEEecCC----CceEEEEccCCEEEEEEc-------CceEEEecCCCcEEE
Confidence 577887743 2358999999998765543222 3444444 788888765 344667999999988
Q ss_pred ccCCC-----CCCcceEEEEECCEEEEEccCCCC-ccc--CeEEEEECCCCcEEEccCCCCCCcceeEEEE-CC-EEEEE
Q psy10286 586 VKSMQ-----KHRSAGGVIAFDSYVYALGGHDGL-SIF--DSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NN-KIYVC 655 (748)
Q Consensus 586 ~~~~~-----~~r~~~~~~~~~~~iyv~GG~~~~-~~~--~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~-~i~v~ 655 (748)
+...+ ..+.+-.++.-+|.+|+..-.... ... ..++++++. .+.+.+..- . ....+.+.- ++ .+|+.
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~-~-~~pNGi~~s~dg~~lyv~ 151 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG-L-GFPNGIAFSPDGKTLYVA 151 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE-E-SSEEEEEEETTSSEEEEE
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC-c-ccccceEECCcchheeec
Confidence 86653 223333444447888886432211 111 579999998 666555321 1 112344433 34 57775
Q ss_pred eccCCCccccEEEEEeCCCC--cEEE---ccCCCCCCc-ceEEEE-ECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 656 GGYDGAIFLQSVEMYDPITD--EWKM---IASMNVMRS-RVALVA-NMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 656 GG~~~~~~~~~v~~yd~~~~--~W~~---~~~~p~~r~-~~~~~~-~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
--. .+.|+.|++... .+.. +..++.... --++++ -+|.|||..- ....|.+||++...-..+
T Consensus 152 ds~-----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~-----~~~~I~~~~p~G~~~~~i- 220 (246)
T PF08450_consen 152 DSF-----NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADW-----GGGRIVVFDPDGKLLREI- 220 (246)
T ss_dssp ETT-----TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEE-----TTTEEEEEETTSCEEEEE-
T ss_pred ccc-----cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEc-----CCCEEEEECCCccEEEEE-
Confidence 432 357999988543 2432 223333221 223333 3789999732 114799999996555554
Q ss_pred CCC
Q psy10286 729 PMC 731 (748)
Q Consensus 729 ~~~ 731 (748)
.+|
T Consensus 221 ~~p 223 (246)
T PF08450_consen 221 ELP 223 (246)
T ss_dssp E-S
T ss_pred cCC
Confidence 355
No 83
>KOG0511|consensus
Probab=96.74 E-value=0.0013 Score=65.91 Aligned_cols=197 Identities=13% Similarity=0.161 Sum_probs=118.1
Q ss_pred HHHHHhcC---CcccEEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhcccccccccccc
Q psy10286 65 MEEIRRQG---KLCDVTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTS 140 (748)
Q Consensus 65 l~~l~~~~---~~~Dv~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (748)
+..++++. ...|++|.+ +|+.|.|||..|++||.+|...+..-+... .
T Consensus 137 i~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~~--h-------------------------- 188 (516)
T KOG0511|consen 137 IQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQG--H-------------------------- 188 (516)
T ss_pred HHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhcccc--C--------------------------
Confidence 45555554 346888876 778899999999999998876554322111 1
Q ss_pred ccccccceeeeecCCCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHH------------------------H
Q psy10286 141 DMAESKQREITMQGIDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVA------------------------D 196 (748)
Q Consensus 141 ~~~~~~~~~i~~~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~------------------------~ 196 (748)
+|+-..+-+.+|..+|+|+|-..-.+-...-..|+.+...|++..+. .
T Consensus 189 --------eI~~~~v~~~~f~~flk~lyl~~na~~~~qynallsi~~kF~~e~l~~~~~kdr~~~~sR~~k~~q~~~tq~ 260 (516)
T KOG0511|consen 189 --------EIEAHRVILSAFSPFLKQLYLNTNAEWKDQYNALLSIEVKFSKEKLSLEISKDRMEDLSRICKVCQCESTQK 260 (516)
T ss_pred --------chhhhhhhHhhhhHHHHHHHHhhhhhhhhHHHHHHhhhhhccHHHhHHHHhhhHHHHHHHHHHHHhHHHHHH
Confidence 11114567889999999999874333333445556555555554443 3
Q ss_pred HHHHHhhh--------cccCCcc-cchhhh--------------------------------------------------
Q psy10286 197 ACADFLKK--------RFHPNNV-LDYYVL-------------------------------------------------- 217 (748)
Q Consensus 197 ~c~~~l~~--------~l~~~nc-l~i~~~-------------------------------------------------- 217 (748)
..+++|.. +.+..|- .+.+.+
T Consensus 261 ~~~~~Li~~~~~~ykt~~dl~Ns~~~~fsl~~ayiql~~~~RyP~hla~i~R~eyfk~mf~g~f~e~s~n~~~p~lslp~ 340 (516)
T KOG0511|consen 261 IIEKELIHQRYAEYKTHRDLDNSPMKRFSLQGAYIQLPEEDRYPAHLARILRVEYFKSMFVGDFIESSVNDTRPGLSLPS 340 (516)
T ss_pred HHHHHHHHHHhhhhccchhhccChhheeeeccccccccccccccHHHHHHHHHHHHHHHhccchhhhcCCccccccccch
Confidence 33344432 1222222 000000
Q ss_pred hhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHH---HHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHH
Q psy10286 218 FSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQK---VADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAAD 294 (748)
Q Consensus 218 ~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~---l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~ 294 (748)
......+..+.++|+.+.++..+-+.+++..|+.+.+.. |+.++..-|.+ -..+.+.|+.-++.+.|.
T Consensus 341 ~~~~vveI~lr~lY~d~tdi~~~~A~dvll~ad~lal~~dr~Lkt~as~~itq---------~~e~id~y~V~dIl~~~w 411 (516)
T KOG0511|consen 341 LADVVVEIDLRNLYCDQTDIIFDVASDVLLFADKLALADDRLLKTAASAEITQ---------WLELIDMYGVLDILEYCW 411 (516)
T ss_pred HHHHHHHHHHHHhhcccccchHHHHhhHHHHhhHhhhhhhhhhhhhhhHHHHH---------HHHHHHhhhHHHHHHHHH
Confidence 001134557889999999999999999999999887652 44444444443 234456667777777777
Q ss_pred HHHHHhhhhhcc
Q psy10286 295 KYVQQYFHEVSM 306 (748)
Q Consensus 295 ~~i~~~~~~l~~ 306 (748)
.-...++.+...
T Consensus 412 d~~~~rlEqfa~ 423 (516)
T KOG0511|consen 412 DLVACRLEQFAE 423 (516)
T ss_pred HhhhHHHHHHHH
Confidence 766666555443
No 84
>PRK05137 tolB translocation protein TolB; Provisional
Probab=96.64 E-value=1.4 Score=48.46 Aligned_cols=191 Identities=11% Similarity=-0.037 Sum_probs=99.8
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++.+|+.+++...+...+...... ...-+| +|++....++ ..+++.+|..++....+..-+..-. .....-+
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~~~~~-~~SPDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spD 300 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGMTFAP-RFSPDGRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPD 300 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCcccCc-EECCCCCEEEEEEecCC---CceEEEEECCCCceEEccCCCCccC-ceeEcCC
Confidence 58999999999887776554322221 222245 5544443332 2578999999888776654332111 1112224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC-EEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
+ +|+.....++ ...++.+|..+...+.+.... .+.......-+| .|++.. .... ...++.+|+.+.....+
T Consensus 301 G~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~~-~~~~~~~~SpdG~~ia~~~-~~~~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 301 GSQIVFESDRSG---SPQLYVMNADGSNPRRISFGG-GRYSTPVWSPRGDLIAFTK-QGGG--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred CCEEEEEECCCC---CCeEEEEECCCCCeEEeecCC-CcccCeEECCCCCEEEEEE-cCCC--ceEEEEEECCCCceEec
Confidence 4 4544332222 257999998887777764321 111111122244 454443 2211 24789999877766665
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCC-CCCCCCeEEEEeCCCCceEecC
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYD-GVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~-~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
..-. ....-...-+|+.+++.+.. +......++.+|..++.-+.++
T Consensus 374 t~~~--~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l~ 420 (435)
T PRK05137 374 TSGF--LVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREVP 420 (435)
T ss_pred cCCC--CCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEcc
Confidence 4321 11111122245544443322 2211247899999887766654
No 85
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.57 E-value=0.063 Score=54.26 Aligned_cols=124 Identities=16% Similarity=0.303 Sum_probs=76.3
Q ss_pred ccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEeccCCCc-cccEEEEEeCCCCcEEEccC-----CCCCCc
Q psy10286 616 IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAI-FLQSVEMYDPITDEWKMIAS-----MNVMRS 688 (748)
Q Consensus 616 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~-~~~~v~~yd~~~~~W~~~~~-----~p~~r~ 688 (748)
....+..||+.+.+|.....- ....-..+... ++++|+.|-+.... ....+..||.++.+|+.++. +|.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~-i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG-ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC-ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 467899999999999988644 22222334434 67777777654443 45678999999999998865 233332
Q ss_pred ceEEEEEC-CEEEEEeCCCCCCCCCeEEEEeCCCCceEecCC-CCCC-CcceEEEEeec
Q psy10286 689 RVALVANM-GKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP-MCAH-EGGVGVGVIPI 744 (748)
Q Consensus 689 ~~~~~~~~-~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~~~~-r~~~~~~~~~~ 744 (748)
.......+ +.+++.|... .....+..| ...+|+.+.. ...+ -.-.+.-++++
T Consensus 93 a~~~~~~d~~~~~~aG~~~--~g~~~l~~~--dGs~W~~i~~~~~~~~t~I~~l~~~~l 147 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSA--NGSTFLMKY--DGSSWSSIGSDILGSGTTIRGLQVLPL 147 (281)
T ss_pred EEEeeccCCceEEEeceec--CCCceEEEE--cCCceEeccccccCCCCEEEEEEEEec
Confidence 22222223 5677777652 222345666 5789999877 3332 23334445554
No 86
>KOG3473|consensus
Probab=96.57 E-value=0.0063 Score=48.45 Aligned_cols=82 Identities=23% Similarity=0.372 Sum_probs=60.7
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+++. +|.+|-..|-+ |.-|+-.|+||.++...+ +...+++++.++
T Consensus 19 VkLvS~Ddhefiikre~-AmtSgTiraml~gpg~~s--------------------------------e~~~n~v~f~di 65 (112)
T KOG3473|consen 19 VKLVSSDDHEFIIKREH-AMTSGTIRAMLSGPGVFS--------------------------------EAEKNEVYFRDI 65 (112)
T ss_pred eEeecCCCcEEEEeehh-hhhhhHHHHHHcCCcccc--------------------------------ccccceEEeccc
Confidence 44554 56777776664 456899999999865433 334455666999
Q ss_pred CHHHHHHHHHhh-----hcee------EEeechhHHHHHHHHHHhcc
Q psy10286 156 DAVAMEALINFV-----YSGR------VTIHSQNVQSLMVVASFLQM 191 (748)
Q Consensus 156 ~~~~~~~~l~fl-----Ytg~------~~i~~~~v~~ll~~A~~l~i 191 (748)
+..+++.+-+|+ |++. .+|.++-+.+||.+|++|.+
T Consensus 66 ~shiLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 66 PSHILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLEC 112 (112)
T ss_pred hHHHHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhcC
Confidence 999999999887 5654 34888899999999999864
No 87
>KOG1987|consensus
Probab=96.54 E-value=0.0035 Score=65.10 Aligned_cols=94 Identities=21% Similarity=0.208 Sum_probs=73.1
Q ss_pred CeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCCCHHHHHH
Q psy10286 83 DQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAMEA 162 (748)
Q Consensus 83 ~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 162 (748)
+..+.+|+++++++|++|+.|+..+..+.....+ .+.+.++..++.
T Consensus 109 ~g~~~~~~~~~~a~~~V~~~~~~~d~~~~~~~~~----------------------------------~~~d~~~~~~~~ 154 (297)
T KOG1987|consen 109 NGFLVAHKLVLVARSEVFEAMGKSDVFKESSKLI----------------------------------TLLEEKPEVLEA 154 (297)
T ss_pred CcEEEcCceEEEeeecceeeecccccchhccccc----------------------------------cccccchhhHhh
Confidence 5669999999999999999999876544433322 337889999999
Q ss_pred HHHhhhceeEEeechhHH---HHHHHHHHhcchhHHHHHHHHhhhcccCCc
Q psy10286 163 LINFVYSGRVTIHSQNVQ---SLMVVASFLQMQKVADACADFLKKRFHPNN 210 (748)
Q Consensus 163 ~l~flYtg~~~i~~~~v~---~ll~~A~~l~i~~l~~~c~~~l~~~l~~~n 210 (748)
+..|.|+..-....+.+. .++.+|..++.+.++..|...+...+...+
T Consensus 155 ~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~lk~~~~~~l~~~~~~~~ 205 (297)
T KOG1987|consen 155 LNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRHLKLACMPVLLSLIETLN 205 (297)
T ss_pred hceEEEeccchHHHHHhhcCChhhhhccccccHHHHHHHHHHHHHHHHhhh
Confidence 999999977655555554 788899999999999999988887544433
No 88
>PRK04792 tolB translocation protein TolB; Provisional
Probab=96.30 E-value=2.4 Score=46.79 Aligned_cols=186 Identities=10% Similarity=0.005 Sum_probs=97.9
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++.+|+.+++-+.+...+..... ....-+| +|++....++ ..+++.+|..+++.+.+..-..... .....-+
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~-~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~-~p~wSpD 316 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGA-PRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDT-EPSWHPD 316 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCC-eeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCcc-ceEECCC
Confidence 5799999998877666654422121 1222244 5655543332 2579999999998877754221111 1111224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC-EEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
+ .|++....++ ...++.+|..+++++.+..-. .........-++ .|++.+ ..+. ...++.+|+.+...+.+
T Consensus 317 G~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~-~~~g--~~~I~~~dl~~g~~~~l 389 (448)
T PRK04792 317 GKSLIFTSERGG---KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVN-RTNG--KFNIARQDLETGAMQVL 389 (448)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEE-ecCC--ceEEEEEECCCCCeEEc
Confidence 4 5555443322 257999999999988774211 111111222244 455543 3221 34789999999888776
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
..-.... ..+ ..-+++.+++....+. ...++++|.. +.+..
T Consensus 390 t~~~~d~-~ps-~spdG~~I~~~~~~~g--~~~l~~~~~~-G~~~~ 430 (448)
T PRK04792 390 TSTRLDE-SPS-VAPNGTMVIYSTTYQG--KQVLAAVSID-GRFKA 430 (448)
T ss_pred cCCCCCC-Cce-ECCCCCEEEEEEecCC--ceEEEEEECC-CCceE
Confidence 5322111 122 2234444444332221 2357888874 44544
No 89
>KOG4682|consensus
Probab=96.22 E-value=0.0023 Score=64.87 Aligned_cols=120 Identities=17% Similarity=0.309 Sum_probs=91.3
Q ss_pred eeeeeeeeccCHHHH-Hhhcccccccccceeeeecchh----eehhhccccccccccccccccccceeeeecCCCHHHHH
Q psy10286 87 TCHRIVLAATIPYFQ-AMFTSDMAESKQREITMQGIDA----VIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVAME 161 (748)
Q Consensus 87 ~aHk~iL~a~S~~F~-~~~~~~~~e~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 161 (748)
+.-+++|.. +.||. ++|. ++....|.+..++. +-+--..|+||+.||.|..+|+.++.|++.--++.+=.
T Consensus 47 pkr~~ll~t-~kyiyq~lf~----q~enSDv~l~alg~eWrlHk~yL~QS~yf~smf~Gtw~es~~~iIqleI~Dp~Id~ 121 (488)
T KOG4682|consen 47 PKRKKLLQT-QKYIYQNLFL----QGENSDVILEALGFEWRLHKPYLFQSEYFKSMFSGTWKESSMNIIQLEIPDPNIDV 121 (488)
T ss_pred hhHHHHHHH-HHHHHHHHHh----cCCCcceehhhccceeeeeeeeeeccHHHHHHhccccChhhCceEEEEcCCCcccH
Confidence 666777765 56665 5554 23334444444443 23445679999999999999999999999877766533
Q ss_pred HHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEeccc
Q psy10286 162 ALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQN 241 (748)
Q Consensus 162 ~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~ 241 (748)
. ++...+.-+|.+.+.|..+.
T Consensus 122 ~-----------------------------------------------------------al~~a~gsLY~dEveI~l~d 142 (488)
T KOG4682|consen 122 V-----------------------------------------------------------ALQVAFGSLYRDEVEIKLSD 142 (488)
T ss_pred H-----------------------------------------------------------HHHHHHhhhhhhheeccHHH
Confidence 3 44557788999999999999
Q ss_pred HHHHHHHhhhcCcHHHHHHHHHHHhhcCC
Q psy10286 242 VQSLMVVASFLQMQKVADACADFLKKRFH 270 (748)
Q Consensus 242 ~~~l~~~a~~~~l~~l~~~c~~~l~~~l~ 270 (748)
+..++.+|.+++++.+.+.|.+-+.+.|+
T Consensus 143 v~gvlAaA~~lqldgl~qrC~evMie~ls 171 (488)
T KOG4682|consen 143 VVGVLAAACLLQLDGLIQRCGEVMIETLS 171 (488)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhcC
Confidence 99999999999999999999999986554
No 90
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.06 E-value=3.3 Score=46.21 Aligned_cols=281 Identities=13% Similarity=0.179 Sum_probs=137.1
Q ss_pred cCcEEEEEcCccCCCCCCcceEeecCCCCc--eeeccccc--------ccceEEecc-cccccCCCccceEEEEeCCCCc
Q psy10286 420 VMGHIFAVGGLTKAGDSLSTVEVFDPLVGR--WQMAEEET--------LSNAVISTK-SCLTKAGDSLSTVEVFDPLVGR 488 (748)
Q Consensus 420 ~~~~i~v~GG~~~~~~~~~~~~~y~~~~~~--W~~~~~~~--------~~~~~~~~~-~~~~~~g~~~~~~~~yd~~~~~ 488 (748)
.++++|+.... ..+.++|..+++ |....... ....+...+ ..++.. .....+..+|..+++
T Consensus 60 ~~g~vy~~~~~-------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~-~~~g~v~AlD~~TG~ 131 (488)
T cd00216 60 VDGDMYFTTSH-------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFG-TFDGRLVALDAETGK 131 (488)
T ss_pred ECCEEEEeCCC-------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEe-cCCCeEEEEECCCCC
Confidence 57788875432 357888887654 76533211 111112222 333332 233578999998775
Q ss_pred --eEEccCCCc-cc--ceeEEEEECCEEEEEccCCCC----CCCCeEEEEECCCCe--EEEccCCC----CCc-------
Q psy10286 489 --WQMAEAMSM-LR--SRVGVAVMKNRLYAFGGYNGS----ERLSTVEEFDPVRRV--WNKVSPMC----FKR------- 546 (748)
Q Consensus 489 --W~~~~~~~~-~r--~~~~~~~~~~~iyv~GG~~~~----~~~~~v~~yd~~t~~--W~~~~~~~----~~r------- 546 (748)
|+.-...+. .. ...+.++.++.+|+ |..+.. .....++.+|..|.+ |+.-...+ .+.
T Consensus 132 ~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~ 210 (488)
T cd00216 132 QVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQM 210 (488)
T ss_pred EeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcce
Confidence 875432221 11 12233455666665 432211 234578999998764 87532111 110
Q ss_pred ---c---eeEEEEE---CCEEEEEeCCC------------CCCCCceEEEEeCCCCe--EEEccCCCCC---CcceEEEE
Q psy10286 547 ---S---AVGAAAL---NDKLYVCGGYD------------GVSSLNTVECYEPDKDQ--WRIVKSMQKH---RSAGGVIA 600 (748)
Q Consensus 547 ---~---~~~~~~~---~~~iyv~GG~~------------~~~~~~~~~~yd~~~~~--W~~~~~~~~~---r~~~~~~~ 600 (748)
. -.+..++ ++.+|+-.|.. .....+.++.+|..+.+ |+.-...+.. +.....+.
T Consensus 211 ~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~ 290 (488)
T cd00216 211 WGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSL 290 (488)
T ss_pred ecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeE
Confidence 0 0011222 46777654421 01123579999998775 8764322110 11111111
Q ss_pred -----ECCE---EEEEccCCCCcccCeEEEEECCCCc--EEEccCCCCCCcceeEEEECCEEEEEeccC-----------
Q psy10286 601 -----FDSY---VYALGGHDGLSIFDSVERYDPKTDE--WTSVKPMLTKRCRLGVAALNNKIYVCGGYD----------- 659 (748)
Q Consensus 601 -----~~~~---iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~----------- 659 (748)
.++. +.++|..+ ..++.+|.++.+ |+.-.. ...++.-.+.+|+-....
T Consensus 291 ~~~~~~~g~~~~~V~~g~~~-----G~l~ald~~tG~~~W~~~~~------~~~~~~~~~~vyv~~~~~~~~~~~~~~~~ 359 (488)
T cd00216 291 ADIKPKDGKPVPAIVHAPKN-----GFFYVLDRTTGKLISARPEV------EQPMAYDPGLVYLGAFHIPLGLPPQKKKR 359 (488)
T ss_pred EeccccCCCeeEEEEEECCC-----ceEEEEECCCCcEeeEeEee------ccccccCCceEEEccccccccCcccccCC
Confidence 2232 34444432 358999998875 765321 011112226666643210
Q ss_pred -CCccccEEEEEeCCCCc--EEEccC-CC------CCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc--eEe
Q psy10286 660 -GAIFLQSVEMYDPITDE--WKMIAS-MN------VMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS--WAF 726 (748)
Q Consensus 660 -~~~~~~~v~~yd~~~~~--W~~~~~-~p------~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 726 (748)
.......+..+|..+.+ |+.-.. -. .+......+..++.||+ |..+ ..++.+|.++++ |+.
T Consensus 360 ~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~-g~~d-----G~l~ald~~tG~~lW~~ 432 (488)
T cd00216 360 CKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFA-GAAD-----GYFRAFDATTGKELWKF 432 (488)
T ss_pred CCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEE-ECCC-----CeEEEEECCCCceeeEE
Confidence 01123468889987764 876321 00 11222334444555554 4432 258999998874 663
No 91
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=96.04 E-value=2.5 Score=44.50 Aligned_cols=248 Identities=13% Similarity=0.087 Sum_probs=115.5
Q ss_pred ccccCCCccceEEEEeCC-CCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCC
Q psy10286 468 CLTKAGDSLSTVEVFDPL-VGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPM 542 (748)
Q Consensus 468 ~~~~~g~~~~~~~~yd~~-~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~ 542 (748)
.++..+.....+..|+.. +++++.+...+.+..-..++.. ++.+|+.+-. .+.+..||..++. ...+...
T Consensus 48 ~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~-----~~~v~v~~~~~~g~~~~~~~~~ 122 (330)
T PRK11028 48 HLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYN-----ANCVSVSPLDKDGIPVAPIQII 122 (330)
T ss_pred EEEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcC-----CCeEEEEEECCCCCCCCceeec
Confidence 344443444567667665 4566655443322222223333 4457765421 2456677765321 1222222
Q ss_pred CCCcceeEEEEE-C-CEEEEEeCCCCCCCCceEEEEeCCCCe-EEEcc----CCCCCCcceEEEEE--CCEEEEEccCCC
Q psy10286 543 CFKRSAVGAAAL-N-DKLYVCGGYDGVSSLNTVECYEPDKDQ-WRIVK----SMQKHRSAGGVIAF--DSYVYALGGHDG 613 (748)
Q Consensus 543 ~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~----~~~~~r~~~~~~~~--~~~iyv~GG~~~ 613 (748)
+.....|+++.. + +.+|+..- ..+.+..||..++. ..... ..+....-+.++.. +..+|+....
T Consensus 123 ~~~~~~~~~~~~p~g~~l~v~~~-----~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-- 195 (330)
T PRK11028 123 EGLEGCHSANIDPDNRTLWVPCL-----KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-- 195 (330)
T ss_pred cCCCcccEeEeCCCCCEEEEeeC-----CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC--
Confidence 222233554444 3 36666542 23578889887632 21110 11111111223333 3467776543
Q ss_pred CcccCeEEEEECC--CCcEEEc---cCCC----CCCcceeEEEE-CC-EEEEEeccCCCccccEEEEEeC--CCCcEEEc
Q psy10286 614 LSIFDSVERYDPK--TDEWTSV---KPML----TKRCRLGVAAL-NN-KIYVCGGYDGAIFLQSVEMYDP--ITDEWKMI 680 (748)
Q Consensus 614 ~~~~~~~~~yd~~--~~~W~~~---~~~p----~~r~~~~~~~~-~~-~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~ 680 (748)
.+.+..||.. +++++.+ ..+| .+|....+... ++ .+|+... . .+.+.+|+. ....++.+
T Consensus 196 ---~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~-~----~~~I~v~~i~~~~~~~~~~ 267 (330)
T PRK11028 196 ---NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDR-T----ASLISVFSVSEDGSVLSFE 267 (330)
T ss_pred ---CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecC-C----CCeEEEEEEeCCCCeEEEe
Confidence 2466666654 4454333 2232 23322222222 33 5666522 1 245666655 44456555
Q ss_pred cCCCC---CCcceEEEEECCEEEEEeCCCCCCCCCeEEEE--eCCCCceEecCCCCCCCcceEEEE
Q psy10286 681 ASMNV---MRSRVALVANMGKLWAIGGYDGVSNLPTVEVY--DPSTDSWAFVAPMCAHEGGVGVGV 741 (748)
Q Consensus 681 ~~~p~---~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~y--d~~~~~W~~~~~~~~~r~~~~~~~ 741 (748)
+..+. +| ......-+..||+.+..+ +.+.+| |.+++.++.+...+....-.++.+
T Consensus 268 ~~~~~~~~p~-~~~~~~dg~~l~va~~~~-----~~v~v~~~~~~~g~l~~~~~~~~g~~P~~~~~ 327 (330)
T PRK11028 268 GHQPTETQPR-GFNIDHSGKYLIAAGQKS-----HHISVYEIDGETGLLTELGRYAVGQGPMWVSV 327 (330)
T ss_pred EEEeccccCC-ceEECCCCCEEEEEEccC-----CcEEEEEEcCCCCcEEEccccccCCCceEEEE
Confidence 44332 22 122222255677765322 345555 667788988877766554444444
No 92
>KOG2055|consensus
Probab=95.99 E-value=0.36 Score=50.39 Aligned_cols=172 Identities=16% Similarity=0.217 Sum_probs=98.5
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCE-EEEEeCCCCCCCCceEEEEeCCCCeEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDK-LYVCGGYDGVSSLNTVECYEPDKDQWR 584 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~ 584 (748)
...+.+++|.++. -.++..|-.+|. .+.++...++.-..+.+ +|+ ..+++|. -.-++.||..+.+-+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccc
Confidence 4568888887643 345666666665 44444322222222222 555 6666663 367899999999988
Q ss_pred EccCCCC--CCcc-eEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCC
Q psy10286 585 IVKSMQK--HRSA-GGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA 661 (748)
Q Consensus 585 ~~~~~~~--~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 661 (748)
++.++-. .+.. .-.+..++...++.|.+| -++.....|++|..--.++..-...+....+..||+.||.
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~--- 365 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGT--- 365 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCC---
Confidence 8865431 1111 122334556667777643 4778888888885433333333333333445678888885
Q ss_pred ccccEEEEEeCCCCc----EEEccCCCCCCcceEEE-EECCEEEEEeC
Q psy10286 662 IFLQSVEMYDPITDE----WKMIASMNVMRSRVALV-ANMGKLWAIGG 704 (748)
Q Consensus 662 ~~~~~v~~yd~~~~~----W~~~~~~p~~r~~~~~~-~~~~~l~v~GG 704 (748)
..||++|...+. |..-+.. .+-+.| ..++.++..|-
T Consensus 366 ---GeV~v~nl~~~~~~~rf~D~G~v----~gts~~~S~ng~ylA~GS 406 (514)
T KOG2055|consen 366 ---GEVYVWNLRQNSCLHRFVDDGSV----HGTSLCISLNGSYLATGS 406 (514)
T ss_pred ---ceEEEEecCCcceEEEEeecCcc----ceeeeeecCCCceEEecc
Confidence 489999998873 4433332 233333 34666555553
No 93
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=95.96 E-value=0.69 Score=46.08 Aligned_cols=183 Identities=14% Similarity=0.185 Sum_probs=110.5
Q ss_pred CCEEEEEccCCCCCCCCeEEEEEC-----CCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDP-----VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ 582 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~-----~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 582 (748)
++++|++.|..+. .++.|.- ..+++...-.+|.+-.+.+.++++|.+|---. ..+.+.+||..++.
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~-----~s~~IvkydL~t~~ 100 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKY-----NSRNIVKYDLTTRS 100 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEec-----CCceEEEEECcCCc
Confidence 5678888886543 4555532 33344444457777788888999999887644 35789999999987
Q ss_pred EEEccCCCCCCcc------------eEEEEECCEEEEEccCCCCcccCeEEEEECCCC----cEEEccCCCCCCcceeEE
Q psy10286 583 WRIVKSMQKHRSA------------GGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD----EWTSVKPMLTKRCRLGVA 646 (748)
Q Consensus 583 W~~~~~~~~~r~~------------~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~ 646 (748)
-.....+|.+... .-.++-++-|+++-...+....-.+-+.||.+- +|.. ..+. +....+.
T Consensus 101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k-~~~~naF 177 (250)
T PF02191_consen 101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPK-RSAGNAF 177 (250)
T ss_pred EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCc-hhhccee
Confidence 5533334333222 233444666777755433221234566777654 4653 2322 3333456
Q ss_pred EECCEEEEEeccCCCccccEEEEEeCCCCcEEEcc-CCCCCCcceEEEEE---CCEEEEEe
Q psy10286 647 ALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA-SMNVMRSRVALVAN---MGKLWAIG 703 (748)
Q Consensus 647 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-~~p~~r~~~~~~~~---~~~l~v~G 703 (748)
++-|.+|++...+... ..-.+.||..+++=..+. +++.+-..++++.+ +.+||++-
T Consensus 178 mvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~~~i~f~~~~~~~~~l~YNP~dk~LY~wd 237 (250)
T PF02191_consen 178 MVCGVLYATDSYDTRD-TEIFYAFDTYTGKEEDVSIPFPNPYGNISMLSYNPRDKKLYAWD 237 (250)
T ss_pred eEeeEEEEEEECCCCC-cEEEEEEECCCCceeceeeeeccccCceEeeeECCCCCeEEEEE
Confidence 6678999998765433 345678999988766542 22333345666665 58899883
No 94
>PRK04792 tolB translocation protein TolB; Provisional
Probab=95.91 E-value=2.5 Score=46.54 Aligned_cols=148 Identities=8% Similarity=-0.037 Sum_probs=80.8
Q ss_pred ceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC
Q psy10286 571 NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN 650 (748)
Q Consensus 571 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 650 (748)
..++.+|+.+++-+.+...+.........--+..|++....++ ..+++.+|..+++.+.+......-... ...-++
T Consensus 242 ~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g---~~~Iy~~dl~tg~~~~lt~~~~~~~~p-~wSpDG 317 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDG---QPEIYVVDIATKALTRITRHRAIDTEP-SWHPDG 317 (448)
T ss_pred cEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCC---CeEEEEEECCCCCeEECccCCCCccce-EECCCC
Confidence 5789999988877666554422221111112345665543332 257999999999888775432111111 112244
Q ss_pred -EEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 651 -KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 651 -~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
.|++....++ ...+|.+|..+.+++.+..-. .........-+|+.+++.+... ....++.+|+.++..+.+.
T Consensus 318 ~~I~f~s~~~g---~~~Iy~~dl~~g~~~~Lt~~g-~~~~~~~~SpDG~~l~~~~~~~--g~~~I~~~dl~~g~~~~lt 390 (448)
T PRK04792 318 KSLIFTSERGG---KPQIYRVNLASGKVSRLTFEG-EQNLGGSITPDGRSMIMVNRTN--GKFNIARQDLETGAMQVLT 390 (448)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCEEEEecCC-CCCcCeeECCCCCEEEEEEecC--CceEEEEEECCCCCeEEcc
Confidence 4555443322 258999999999988874211 1111112222444444433322 1246899999888876654
No 95
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.88 E-value=0.62 Score=44.74 Aligned_cols=142 Identities=18% Similarity=0.161 Sum_probs=78.5
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEcc----CCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEE
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVK----SMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVE 621 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~----~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 621 (748)
++...++++|+|-| +.+|+++..... -..+. .+|. .. -++... ++++|+|-|. ..|
T Consensus 11 A~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~-~I-DAa~~~~~~~~~yfFkg~-------~yw 74 (194)
T cd00094 11 AVTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPS-PV-DAAFERPDTGKIYFFKGD-------KYW 74 (194)
T ss_pred eEEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCC-Cc-cEEEEECCCCEEEEECCC-------EEE
Confidence 34445699999977 467777754211 11111 1221 12 223333 3899999874 688
Q ss_pred EEECCCCcEE---EccCCCCCC--cc-eeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEE-----c----cCCC
Q psy10286 622 RYDPKTDEWT---SVKPMLTKR--CR-LGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKM-----I----ASMN 684 (748)
Q Consensus 622 ~yd~~~~~W~---~~~~~p~~r--~~-~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~-----~----~~~p 684 (748)
+||..+..+. .+...+.+. .. -++... ++++|++.| +..|.||...++... + ..+|
T Consensus 75 ~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg-------~~y~ry~~~~~~v~~~yP~~i~~~w~g~p 147 (194)
T cd00094 75 VYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG-------DKYWRYDEKTQKMDPGYPKLIETDFPGVP 147 (194)
T ss_pred EEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC-------CEEEEEeCCCccccCCCCcchhhcCCCcC
Confidence 8886642221 111111111 11 222233 589999988 678899876654321 1 1122
Q ss_pred CCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 685 VMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 685 ~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
. .--++... ++++|+|-| +..+.||..+.+
T Consensus 148 ~--~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 148 D--KVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred C--CcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 2 11223333 489999987 578999998776
No 96
>KOG2714|consensus
Probab=95.86 E-value=0.015 Score=59.88 Aligned_cols=85 Identities=16% Similarity=0.262 Sum_probs=69.0
Q ss_pred EEEEECCeEEeeeeeeeeccC--HHHHHhhcccccccccce--eeeecchheehhhccccccccccccccccccceeeee
Q psy10286 77 VTIKVDDQSFTCHRIVLAATI--PYFQAMFTSDMAESKQRE--ITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITM 152 (748)
Q Consensus 77 v~i~~~~~~~~aHk~iL~a~S--~~F~~~~~~~~~e~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 152 (748)
|.|.|+|+.|.-.+--|+-.. .+|.+++++.+...+.+. |.
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~~~~~~~iF----------------------------------- 57 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSLKDESGAIF----------------------------------- 57 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccccCCCCceE-----------------------------------
Confidence 678899999998888886654 699999998876554433 32
Q ss_pred cCCCHHHHHHHHHhhhceeEEeechhHHHHHH-HHHHhcchhHHH
Q psy10286 153 QGIDAVAMEALINFVYSGRVTIHSQNVQSLMV-VASFLQMQKVAD 196 (748)
Q Consensus 153 ~~~~~~~~~~~l~flYtg~~~i~~~~v~~ll~-~A~~l~i~~l~~ 196 (748)
-+=+|+.|..+|+||-||++++.......++. -|.+|++..++.
T Consensus 58 IDRDPdlFaviLn~LRTg~L~~~g~~~~~llhdEA~fYGl~~llr 102 (465)
T KOG2714|consen 58 IDRDPDLFAVILNLLRTGDLDASGVFPERLLHDEAMFYGLTPLLR 102 (465)
T ss_pred ecCCchHHHHHHHHHhcCCCCCccCchhhhhhhhhhhcCcHHHHH
Confidence 26689999999999999999997776666666 999999998876
No 97
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=95.82 E-value=2.6 Score=43.09 Aligned_cols=175 Identities=17% Similarity=0.093 Sum_probs=85.5
Q ss_pred ceEEEEeCCCCceEEccCC-CcccceeEEEEE-C-CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAM-SMLRSRVGVAVM-K-NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 553 (748)
..+..||+.+++-...-.. ..++ +++.. + +.+|+.++. .+.+..||..+.+....-+.... ....+.
T Consensus 11 ~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~-----~~~v~~~d~~~~~~~~~~~~~~~--~~~~~~ 80 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASD-----SDTIQVIDLATGEVIGTLPSGPD--PELFAL 80 (300)
T ss_pred CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECC-----CCeEEEEECCCCcEEEeccCCCC--ccEEEE
Confidence 4788889887764332221 1122 22222 3 457777653 24688999988766442111111 122222
Q ss_pred E-C-CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 554 L-N-DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 554 ~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
. + +.+|+.++.+ ..+..||+.+.+- +..++......+++. -++.+++++..++ +.+..||..+.+-
T Consensus 81 ~~~g~~l~~~~~~~-----~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~----~~~~~~d~~~~~~ 149 (300)
T TIGR03866 81 HPNGKILYIANEDD-----NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETT----NMAHFIDTKTYEI 149 (300)
T ss_pred CCCCCEEEEEcCCC-----CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCC----CeEEEEeCCCCeE
Confidence 2 3 4566665432 4688899887542 222221111123333 3566666665432 2456678776543
Q ss_pred EEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcE
Q psy10286 631 TSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEW 677 (748)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 677 (748)
...... ..+..+....-+++.+++++.. ...+..||..+.+.
T Consensus 150 ~~~~~~-~~~~~~~~~s~dg~~l~~~~~~----~~~v~i~d~~~~~~ 191 (300)
T TIGR03866 150 VDNVLV-DQRPRFAEFTADGKELWVSSEI----GGTVSVIDVATRKV 191 (300)
T ss_pred EEEEEc-CCCccEEEECCCCCEEEEEcCC----CCEEEEEEcCccee
Confidence 221111 1112222223355544444422 14688899887653
No 98
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.79 E-value=0.22 Score=49.23 Aligned_cols=157 Identities=19% Similarity=0.206 Sum_probs=99.9
Q ss_pred EEEE-ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCC
Q psy10286 503 GVAV-MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD 581 (748)
Q Consensus 503 ~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 581 (748)
+... .+|.+|..-|..+. +.+.+||+.+++-....++|..-.+-+++.++++||..==. -...+.||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~t- 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNT- 119 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTT-
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-----CCeEEEEcccc-
Confidence 3444 47899988776543 57889999999887778888888899999999999998543 35789999875
Q ss_pred eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEc---c--CCCCCCcceeEEEECCEEEEEe
Q psy10286 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSV---K--PMLTKRCRLGVAALNNKIYVCG 656 (748)
Q Consensus 582 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~---~--~~p~~r~~~~~~~~~~~i~v~G 656 (748)
.+.+...+.+..+-+++..+..+++--|. +.++..||++-+=..- . ..|..+ .--.-.++|.||.=
T Consensus 120 -l~~~~~~~y~~EGWGLt~dg~~Li~SDGS------~~L~~~dP~~f~~~~~i~V~~~g~pv~~-LNELE~i~G~IyAN- 190 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGWGLTSDGKRLIMSDGS------SRLYFLDPETFKEVRTIQVTDNGRPVSN-LNELEYINGKIYAN- 190 (264)
T ss_dssp -TEEEEEEE-SSS--EEEECSSCEEEE-SS------SEEEEE-TTT-SEEEEEE-EETTEE----EEEEEEETTEEEEE-
T ss_pred -ceEEEEEecCCcceEEEcCCCEEEEECCc------cceEEECCcccceEEEEEEEECCEECCC-cEeEEEEcCEEEEE-
Confidence 45566666667888899888899998884 6899999986543221 1 111111 11122335555432
Q ss_pred ccCCCccccEEEEEeCCCCc---EEEcc
Q psy10286 657 GYDGAIFLQSVEMYDPITDE---WKMIA 681 (748)
Q Consensus 657 G~~~~~~~~~v~~yd~~~~~---W~~~~ 681 (748)
--..+.|.+-||.++. |..+.
T Consensus 191 ----VW~td~I~~Idp~tG~V~~~iDls 214 (264)
T PF05096_consen 191 ----VWQTDRIVRIDPETGKVVGWIDLS 214 (264)
T ss_dssp ----ETTSSEEEEEETTT-BEEEEEE-H
T ss_pred ----eCCCCeEEEEeCCCCeEEEEEEhh
Confidence 1235789999999986 55443
No 99
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=95.79 E-value=0.65 Score=44.59 Aligned_cols=142 Identities=16% Similarity=0.179 Sum_probs=78.4
Q ss_pred EEEECCEEEEEccCCCCCCCCeEEEEECCCCeE--EEc----cCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEE
Q psy10286 504 VAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVW--NKV----SPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVEC 575 (748)
Q Consensus 504 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W--~~~----~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~ 575 (748)
+....+.+|+|-| +.+|+++...... ..+ +.+|.. --++... ++++|+|-| +..|+
T Consensus 12 ~~~~~g~~y~FkG-------~~~w~~~~~~~~~~p~~I~~~w~~~p~~--IDAa~~~~~~~~~yfFkg-------~~yw~ 75 (194)
T cd00094 12 VTTLRGELYFFKG-------RYFWRLSPGKPPGSPFLISSFWPSLPSP--VDAAFERPDTGKIYFFKG-------DKYWV 75 (194)
T ss_pred EEEeCCEEEEEeC-------CEEEEEeCCCCCCCCeEhhhhCCCCCCC--ccEEEEECCCCEEEEECC-------CEEEE
Confidence 3444689999977 4678887652211 112 223321 1122232 389999977 46788
Q ss_pred EeCCCCeEE---Ecc--CCCC--CCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEc-----c-C-CCCC
Q psy10286 576 YEPDKDQWR---IVK--SMQK--HRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSV-----K-P-MLTK 639 (748)
Q Consensus 576 yd~~~~~W~---~~~--~~~~--~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~-----~-~-~p~~ 639 (748)
||..+..+. .+. ..+. .... ++... ++++|+|.|. ..|+||...++...- . . ...+
T Consensus 76 ~~~~~~~~~~Pk~i~~~~~~~~~~~iD-AA~~~~~~~~~yfFkg~-------~y~ry~~~~~~v~~~yP~~i~~~w~g~p 147 (194)
T cd00094 76 YTGKNLEPGYPKPISDLGFPPTVKQID-AALRWPDNGKTYFFKGD-------KYWRYDEKTQKMDPGYPKLIETDFPGVP 147 (194)
T ss_pred EcCcccccCCCcchhhcCCCCCCCCcc-EEEEEcCCCEEEEEeCC-------EEEEEeCCCccccCCCCcchhhcCCCcC
Confidence 876542221 111 1111 1122 23333 6899999984 788998766554211 1 0 0112
Q ss_pred CcceeEEEEC-CEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 640 RCRLGVAALN-NKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 640 r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
..--++.... +++|++-| +..++||..+.+
T Consensus 148 ~~idaa~~~~~~~~yfF~g-------~~y~~~d~~~~~ 178 (194)
T cd00094 148 DKVDAAFRWLDGYYYFFKG-------DQYWRFDPRSKE 178 (194)
T ss_pred CCcceeEEeCCCcEEEEEC-------CEEEEEeCccce
Confidence 2222333344 89999988 689999988765
No 100
>PRK00178 tolB translocation protein TolB; Provisional
Probab=95.77 E-value=2.9 Score=45.89 Aligned_cols=147 Identities=10% Similarity=0.020 Sum_probs=80.6
Q ss_pred ceEEEEeCCCCeEEEccCCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC
Q psy10286 571 NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN 649 (748)
Q Consensus 571 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 649 (748)
..++.+|+.+++-+.+...+..-. .....-+| +|++....++ ..+++.+|..+..++.+...+..-... ...-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~-~~spD 297 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEP-FWGKD 297 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCe-EECCC
Confidence 579999999888777654432111 11112244 5554432222 257999999999888775432211111 11223
Q ss_pred -CEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 650 -NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 650 -~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.+|++....++ ...++.+|..+.++..+.... .........- ++.|++....++ ...++.+|+.++.++.+
T Consensus 298 g~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~l 370 (430)
T PRK00178 298 GRTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRIL 370 (430)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEc
Confidence 45655543222 257999999988888764221 1111111222 445555443222 23689999998887766
Q ss_pred CC
Q psy10286 728 AP 729 (748)
Q Consensus 728 ~~ 729 (748)
..
T Consensus 371 t~ 372 (430)
T PRK00178 371 TD 372 (430)
T ss_pred cC
Confidence 44
No 101
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=95.73 E-value=0.017 Score=48.78 Aligned_cols=91 Identities=13% Similarity=0.184 Sum_probs=58.7
Q ss_pred HHHHHHHHhcchhHHHHHHHHhhhcccCCcccchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHH
Q psy10286 181 SLMVVASFLQMQKVADACADFLKKRFHPNNVLDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADA 260 (748)
Q Consensus 181 ~ll~~A~~l~i~~l~~~c~~~l~~~l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~ 260 (748)
+++.+|..++.+.|.+.|..|+.++ +..+....+|..++. ..
T Consensus 3 ~i~~~a~~~~~~~L~~~~~~~i~~n------------------------------------f~~~~~~~~f~~L~~-~~- 44 (101)
T smart00875 3 GIRRFAELYGLEELLEKALRFILKN------------------------------------FLEVAQSEEFLELSL-EQ- 44 (101)
T ss_pred hHHHHHHHhChHHHHHHHHHHHHHH------------------------------------HHHHhcCcHHhcCCH-HH-
Confidence 5677889999999999998888763 444544445555541 11
Q ss_pred HHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHh------hhhhccCcccccCCHHhHhc
Q psy10286 261 CADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQY------FHEVSMSDEFIGLGVNEVND 320 (748)
Q Consensus 261 c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~------~~~l~~~~~f~~L~~~~l~~ 320 (748)
....|. .+.+. ..+..++++++.+|+.++ +..++++.+|..++.+.+..
T Consensus 45 l~~iL~----~d~l~-------v~~E~~v~~av~~W~~~~~~~~~~~~~ll~~ir~~~~~~~~l~~ 99 (101)
T smart00875 45 LLSLLS----SDDLN-------VPSEEEVFEAVLRWVKHDPERRRHLPELLSHVRFPLLSPEYLLE 99 (101)
T ss_pred HHHHhC----cccCC-------CCCHHHHHHHHHHHHHCCHHHHHHHHHHHHhCCCCCCCHHHHHh
Confidence 112221 11110 012357899999999754 55688899999999887764
No 102
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.73 E-value=4.1 Score=44.70 Aligned_cols=184 Identities=11% Similarity=0.045 Sum_probs=98.1
Q ss_pred CCeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE
Q psy10286 523 LSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF 601 (748)
Q Consensus 523 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 601 (748)
...++++|..+++...+...+... ......-+| +|++....++ ..+++.+|+.++..+.+..-....... ...-
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~~-~~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~sp 301 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGIN-GAPSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAP 301 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCCc-cCceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccce-EECC
Confidence 357999999988877776544221 111222244 5654433332 257999999988776654322111111 1122
Q ss_pred CC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEE-EE-CCEEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 602 DS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVA-AL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 602 ~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
+| +|++.....+ ...++.+|..+++++.+... ........ .- ++.|++..+.++ ...++.+|+.++.++
T Consensus 302 DG~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~~---~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 302 DGKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSGG---QYRIAVMDLSTGSVR 373 (433)
T ss_pred CCCEEEEEECCCC---CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCCC---ceeEEEEECCCCCeE
Confidence 44 4544433322 24799999988888776421 11221222 22 445555544221 247999999998888
Q ss_pred EccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 679 MIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
.+..-... ..-...-+++.+++....+ ....++.+|...+.
T Consensus 374 ~Lt~~~~~--~~p~~spdG~~i~~~s~~~--g~~~L~~~~~~g~~ 414 (433)
T PRK04922 374 TLTPGSLD--ESPSFAPNGSMVLYATREG--GRGVLAAVSTDGRV 414 (433)
T ss_pred ECCCCCCC--CCceECCCCCEEEEEEecC--CceEEEEEECCCCc
Confidence 77532211 1112233566555543322 12468888886544
No 103
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.72 E-value=0.13 Score=50.82 Aligned_cols=153 Identities=17% Similarity=0.181 Sum_probs=99.7
Q ss_pred EEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC
Q psy10286 550 GAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 550 ~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
+... .+|.+|..-|..|. +.+..||+.+++-....++|..-++=+++.++++||..--. ......||+.+
T Consensus 49 GL~~~~~g~LyESTG~yG~---S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l~qLTWk-----~~~~f~yd~~t- 119 (264)
T PF05096_consen 49 GLEFLDDGTLYESTGLYGQ---SSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKLYQLTWK-----EGTGFVYDPNT- 119 (264)
T ss_dssp EEEEEETTEEEEEECSTTE---EEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEEEEEESS-----SSEEEEEETTT-
T ss_pred cEEecCCCEEEEeCCCCCc---EEEEEEECCCCcEEEEEECCccccceeEEEECCEEEEEEec-----CCeEEEEcccc-
Confidence 4555 57899988786554 57889999999988888898888888999999999998766 34689999975
Q ss_pred cEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceE------EEEECCEEEEE
Q psy10286 629 EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVA------LVANMGKLWAI 702 (748)
Q Consensus 629 ~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~------~~~~~~~l~v~ 702 (748)
.+.+...+.+..+.+.+.-++.+++.-| .+.++..||++-+=.. .+.....+.. +-.++|.||.=
T Consensus 120 -l~~~~~~~y~~EGWGLt~dg~~Li~SDG------S~~L~~~dP~~f~~~~--~i~V~~~g~pv~~LNELE~i~G~IyAN 190 (264)
T PF05096_consen 120 -LKKIGTFPYPGEGWGLTSDGKRLIMSDG------SSRLYFLDPETFKEVR--TIQVTDNGRPVSNLNELEYINGKIYAN 190 (264)
T ss_dssp -TEEEEEEE-SSS--EEEECSSCEEEE-S------SSEEEEE-TTT-SEEE--EEE-EETTEE---EEEEEEETTEEEEE
T ss_pred -ceEEEEEecCCcceEEEcCCCEEEEECC------ccceEEECCcccceEE--EEEEEECCEECCCcEeEEEEcCEEEEE
Confidence 4566666667788899988888999888 4789999998643222 1111111111 12235554431
Q ss_pred eCCCCCCCCCeEEEEeCCCCceE
Q psy10286 703 GGYDGVSNLPTVEVYDPSTDSWA 725 (748)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~W~ 725 (748)
.-..+.|.+.||+++.-.
T Consensus 191 -----VW~td~I~~Idp~tG~V~ 208 (264)
T PF05096_consen 191 -----VWQTDRIVRIDPETGKVV 208 (264)
T ss_dssp -----ETTSSEEEEEETTT-BEE
T ss_pred -----eCCCCeEEEEeCCCCeEE
Confidence 113467889999998643
No 104
>KOG2055|consensus
Probab=95.53 E-value=0.44 Score=49.77 Aligned_cols=148 Identities=18% Similarity=0.206 Sum_probs=87.0
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcce--EEEEECCE-EEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAG--GVIAFDSY-VYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~--~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
...+.+++|.++. -.++..|-++|. .+.++...++-- +...-+|. ..+++|. ..-++.||..+.+-+
T Consensus 224 ~~plllvaG~d~~---lrifqvDGk~N~--~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r-----rky~ysyDle~ak~~ 293 (514)
T KOG2055|consen 224 TAPLLLVAGLDGT---LRIFQVDGKVNP--KLQSIHLEKFPIQKAEFAPNGHSVIFTSGR-----RKYLYSYDLETAKVT 293 (514)
T ss_pred CCceEEEecCCCc---EEEEEecCccCh--hheeeeeccCccceeeecCCCceEEEeccc-----ceEEEEeeccccccc
Confidence 3467777887642 244444555554 333332222211 11222444 7777776 356899999999988
Q ss_pred EccCCC---CCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCC
Q psy10286 632 SVKPML---TKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGV 708 (748)
Q Consensus 632 ~~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 708 (748)
++.++- .+-...-.+..++.++++-|.+| -|+.+..+|++|..--.++......+....+.+|++.||..
T Consensus 294 k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G-----~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~G-- 366 (514)
T KOG2055|consen 294 KLKPPYGVEEKSMERFEVSHDSNFIAIAGNNG-----HIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTG-- 366 (514)
T ss_pred cccCCCCcccchhheeEecCCCCeEEEcccCc-----eEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCc--
Confidence 886532 22222233445666666766543 57778888888866444444344444444456777787742
Q ss_pred CCCCeEEEEeCCCCc
Q psy10286 709 SNLPTVEVYDPSTDS 723 (748)
Q Consensus 709 ~~~~~v~~yd~~~~~ 723 (748)
.||++|...+.
T Consensus 367 ----eV~v~nl~~~~ 377 (514)
T KOG2055|consen 367 ----EVYVWNLRQNS 377 (514)
T ss_pred ----eEEEEecCCcc
Confidence 69999998863
No 105
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.48 E-value=0.2 Score=50.63 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=68.0
Q ss_pred CCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCc-ccCeEEEEECCCCcEEEccCC-----CCCCc
Q psy10286 569 SLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLS-IFDSVERYDPKTDEWTSVKPM-----LTKRC 641 (748)
Q Consensus 569 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~~-----p~~r~ 641 (748)
.-..+..||+.+.+|.....-- .-.-.++... ++++|+.|-..-.+ ....+-.||..+.+|+.++.. |.+-.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i-~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipgpv~ 92 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGI-SGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPGPVT 92 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCc-eEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCCcEE
Confidence 4578999999999999886441 1112333333 67888777653222 356789999999999988752 32322
Q ss_pred ceeEEEEC-CEEEEEeccCCCccccEEEEEeCCCCcEEEccC
Q psy10286 642 RLGVAALN-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS 682 (748)
Q Consensus 642 ~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (748)
.......+ +.+++.|... .....+..|| ..+|..++.
T Consensus 93 a~~~~~~d~~~~~~aG~~~--~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 93 ALTFISNDGSNFWVAGRSA--NGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred EEEeeccCCceEEEeceec--CCCceEEEEc--CCceEeccc
Confidence 11111123 4677777652 2234677775 668998865
No 106
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.46 E-value=3.1 Score=41.50 Aligned_cols=204 Identities=16% Similarity=0.152 Sum_probs=90.9
Q ss_pred cceEEEEeCCCCceEEccCCCccc-ceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLR-SRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 553 (748)
-..+..||..+++.... +.... .-.++... ++.+++.|+.+ ..+..||..+.+-...-. .....-.++..
T Consensus 72 ~~~i~i~~~~~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~~~-~~~~~i~~~~~ 143 (289)
T cd00200 72 DKTIRLWDLETGECVRT--LTGHTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTTLR-GHTDWVNSVAF 143 (289)
T ss_pred CCeEEEEEcCcccceEE--EeccCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEEec-cCCCcEEEEEE
Confidence 45788888877532211 11111 11222333 34566666522 468889988654322211 11111222333
Q ss_pred EC-CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCC-cceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 554 LN-DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHR-SAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 554 ~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
.. +.+++.|+.+ ..+..||..+.+- ...+.... .-.++... ++..+++|+.+ ..+..||..+.+.
T Consensus 144 ~~~~~~l~~~~~~-----~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~ 211 (289)
T cd00200 144 SPDGTFVASSSQD-----GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSD-----GTIKLWDLSTGKC 211 (289)
T ss_pred cCcCCEEEEEcCC-----CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCC-----CcEEEEECCCCce
Confidence 33 4555544423 3678888764431 11111111 11222322 44355555543 3688899876443
Q ss_pred EEccCCCCCCcceeEEEEC-CEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcce-EEEEE-CCEEEEEeCCCC
Q psy10286 631 TSVKPMLTKRCRLGVAALN-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV-ALVAN-MGKLWAIGGYDG 707 (748)
Q Consensus 631 ~~~~~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~-~~~l~v~GG~~~ 707 (748)
...-. .....-.++.... +.+++.|+.+ ..+..||..+.. .+..++...... ++... ++..++.||.++
T Consensus 212 ~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~i~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~ 283 (289)
T cd00200 212 LGTLR-GHENGVNSVAFSPDGYLLASGSED-----GTIRVWDLRTGE--CVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283 (289)
T ss_pred ecchh-hcCCceEEEEEcCCCcEEEEEcCC-----CcEEEEEcCCce--eEEEccccCCcEEEEEECCCCCEEEEecCCC
Confidence 32211 1111222333333 4566665523 467888877533 222222211122 22222 346777777543
No 107
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=95.45 E-value=3.6 Score=44.88 Aligned_cols=160 Identities=13% Similarity=0.035 Sum_probs=87.3
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
+|+..++....+. ...++.+|..++....+...+...... ...-++ .|++....++ ..+++.+|..++..+.+
T Consensus 200 dg~~la~~~~~~~--~~~i~v~d~~~g~~~~~~~~~~~~~~~-~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l 273 (417)
T TIGR02800 200 DGQKLAYVSFESG--KPEIYVQDLATGQREKVASFPGMNGAP-AFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRL 273 (417)
T ss_pred CCCEEEEEEcCCC--CcEEEEEECCCCCEEEeecCCCCccce-EECCCCCEEEEEECCCC---CccEEEEECCCCCEEEC
Confidence 5544444443322 257899999888766665443222221 122244 5665543322 25799999998887777
Q ss_pred cCCCCCCcceeEEEECC-EEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEE-EECCEEEEEeCCCCCCCC
Q psy10286 634 KPMLTKRCRLGVAALNN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALV-ANMGKLWAIGGYDGVSNL 711 (748)
Q Consensus 634 ~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~~~~ 711 (748)
.......... ...-++ +|++.....+ ...+|.+|..+..+..+..-. ....... .-+++.+++..... ..
T Consensus 274 ~~~~~~~~~~-~~s~dg~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~--~~ 345 (417)
T TIGR02800 274 TNGPGIDTEP-SWSPDGKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREG--GG 345 (417)
T ss_pred CCCCCCCCCE-EECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccC--Cc
Confidence 5432211111 112244 4555443322 248999999988887764321 1112222 23566666654332 22
Q ss_pred CeEEEEeCCCCceEecC
Q psy10286 712 PTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 712 ~~v~~yd~~~~~W~~~~ 728 (748)
..++.+|+.++.++.+.
T Consensus 346 ~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 346 FNIAVMDLDGGGERVLT 362 (417)
T ss_pred eEEEEEeCCCCCeEEcc
Confidence 47899999888777664
No 108
>KOG4591|consensus
Probab=95.39 E-value=0.038 Score=50.64 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=16.7
Q ss_pred ccCCcccchhhhhhhhHHHHHHHhh
Q psy10286 206 FHPNNVLDYYVLFSCRAMEALINFA 230 (748)
Q Consensus 206 l~~~ncl~i~~~~~~~~~~~ll~~~ 230 (748)
++++||+.++.++..-..+++.+++
T Consensus 166 l~V~NCIk~Ye~AEe~n~~qL~n~~ 190 (280)
T KOG4591|consen 166 LHVDNCIKFYEFAEELNARQLMNVA 190 (280)
T ss_pred hhHhhHHHHHHHHHHhhHHHHHHHH
Confidence 4567888877776666665555554
No 109
>KOG0310|consensus
Probab=95.33 E-value=2.3 Score=44.93 Aligned_cols=211 Identities=18% Similarity=0.210 Sum_probs=104.7
Q ss_pred ceEEEEeCCCCceEE-ccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeE-EEccCCCCCcceeEEEE
Q psy10286 477 STVEVFDPLVGRWQM-AEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVW-NKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~-~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~r~~~~~~~ 553 (748)
..+..|+..+..-.+ ... ..+.-+++... +|++...|+.+| -|.+||..+..- ..+..-..|-..--...
T Consensus 48 ~rvqly~~~~~~~~k~~sr--Fk~~v~s~~fR~DG~LlaaGD~sG-----~V~vfD~k~r~iLR~~~ah~apv~~~~f~~ 120 (487)
T KOG0310|consen 48 VRVQLYSSVTRSVRKTFSR--FKDVVYSVDFRSDGRLLAAGDESG-----HVKVFDMKSRVILRQLYAHQAPVHVTKFSP 120 (487)
T ss_pred cEEEEEecchhhhhhhHHh--hccceeEEEeecCCeEEEccCCcC-----cEEEeccccHHHHHHHhhccCceeEEEecc
Confidence 456677766543211 111 11222333333 899999998654 578899544110 00000001111112233
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCC---CCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC-c
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK---HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD-E 629 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~ 629 (748)
.++.+++.|+-+ .-+..+|..+..- ...+.. .....++...++.|++.||+++ .+-.||+.+. .
T Consensus 121 ~d~t~l~s~sDd-----~v~k~~d~s~a~v--~~~l~~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~~ 188 (487)
T KOG0310|consen 121 QDNTMLVSGSDD-----KVVKYWDLSTAYV--QAELSGHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLTS 188 (487)
T ss_pred cCCeEEEecCCC-----ceEEEEEcCCcEE--EEEecCCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCCc
Confidence 588899988743 2344555555542 112211 1111233334788999999976 4777887776 4
Q ss_pred EEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcce----EEEEE--CCEEEE
Q psy10286 630 WTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV----ALVAN--MGKLWA 701 (748)
Q Consensus 630 W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~----~~~~~--~~~l~v 701 (748)
|.. .+...-.--.++.+ +..|.-.|| +.+-++|..+.. .++..+..| +|..+ +++=++
T Consensus 189 ~v~--elnhg~pVe~vl~lpsgs~iasAgG-------n~vkVWDl~~G~-----qll~~~~~H~KtVTcL~l~s~~~rLl 254 (487)
T KOG0310|consen 189 RVV--ELNHGCPVESVLALPSGSLIASAGG-------NSVKVWDLTTGG-----QLLTSMFNHNKTVTCLRLASDSTRLL 254 (487)
T ss_pred eeE--EecCCCceeeEEEcCCCCEEEEcCC-------CeEEEEEecCCc-----eehhhhhcccceEEEEEeecCCceEe
Confidence 432 22211111122333 344555566 678888876442 222222211 22222 456677
Q ss_pred EeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 702 IGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 702 ~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
-||.++ .|-+|| +..|+.+
T Consensus 255 S~sLD~-----~VKVfd--~t~~Kvv 273 (487)
T KOG0310|consen 255 SGSLDR-----HVKVFD--TTNYKVV 273 (487)
T ss_pred eccccc-----ceEEEE--ccceEEE
Confidence 777665 378888 4445544
No 110
>PRK04922 tolB translocation protein TolB; Provisional
Probab=95.32 E-value=4.2 Score=44.68 Aligned_cols=145 Identities=14% Similarity=0.060 Sum_probs=79.9
Q ss_pred ceEEEEeCCCCeEEEccCCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC
Q psy10286 571 NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN 649 (748)
Q Consensus 571 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 649 (748)
..++.+|..+++-+.+...+.... .....-+| +|++....++ ..+++.+|+.+++...+......-... ...-+
T Consensus 228 ~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g---~~~Iy~~d~~~g~~~~lt~~~~~~~~~-~~spD 302 (433)
T PRK04922 228 SAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDG---NPEIYVMDLGSRQLTRLTNHFGIDTEP-TWAPD 302 (433)
T ss_pred cEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCC---CceEEEEECCCCCeEECccCCCCccce-EECCC
Confidence 578999999888777765543211 11222244 5655443332 257999999998877664322111111 12224
Q ss_pred CE-EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE--ECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 650 NK-IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA--NMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 650 ~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
++ |++.....+ ...+|.+|..+.+++.+..- ......... -++.|++..+.+ ....++++|+.++.++.
T Consensus 303 G~~l~f~sd~~g---~~~iy~~dl~~g~~~~lt~~--g~~~~~~~~SpDG~~Ia~~~~~~---~~~~I~v~d~~~g~~~~ 374 (433)
T PRK04922 303 GKSIYFTSDRGG---RPQIYRVAASGGSAERLTFQ--GNYNARASVSPDGKKIAMVHGSG---GQYRIAVMDLSTGSVRT 374 (433)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEEeecC--CCCccCEEECCCCCEEEEEECCC---CceeEEEEECCCCCeEE
Confidence 44 444433322 25799999988888776421 112222222 244555554422 12378999998888776
Q ss_pred cC
Q psy10286 727 VA 728 (748)
Q Consensus 727 ~~ 728 (748)
+.
T Consensus 375 Lt 376 (433)
T PRK04922 375 LT 376 (433)
T ss_pred CC
Confidence 54
No 111
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=95.30 E-value=3.5 Score=41.11 Aligned_cols=184 Identities=15% Similarity=0.148 Sum_probs=84.6
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
++..+++|+.+ ..+..||..+++....-.. ....-.++... ++++++.|+.+ ..+..||..+..-...
T Consensus 62 ~~~~l~~~~~~-----~~i~i~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~-----~~i~~~~~~~~~~~~~ 130 (289)
T cd00200 62 DGTYLASGSSD-----KTIRLWDLETGECVRTLTG-HTSYVSSVAFSPDGRILSSSSRD-----KTIKVWDVETGKCLTT 130 (289)
T ss_pred CCCEEEEEcCC-----CeEEEEEcCcccceEEEec-cCCcEEEEEEcCCCCEEEEecCC-----CeEEEEECCCcEEEEE
Confidence 44456666643 4688888877532211111 11112222222 34666666633 4688899875543222
Q ss_pred cCCCCCCcceEEEEEC-CEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCC-cceeEEEE-CCEEEEEeccCCCcc
Q psy10286 587 KSMQKHRSAGGVIAFD-SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR-CRLGVAAL-NNKIYVCGGYDGAIF 663 (748)
Q Consensus 587 ~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r-~~~~~~~~-~~~i~v~GG~~~~~~ 663 (748)
-. .....-.++.... +.+++.|+.+ ..+..||..+.+- +..+.... .-.++... ++..+++|+.+
T Consensus 131 ~~-~~~~~i~~~~~~~~~~~l~~~~~~-----~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~---- 198 (289)
T cd00200 131 LR-GHTDWVNSVAFSPDGTFVASSSQD-----GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSD---- 198 (289)
T ss_pred ec-cCCCcEEEEEEcCcCCEEEEEcCC-----CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCC----
Confidence 11 1111122333333 4554444423 3588888864432 11111111 11222222 34355555542
Q ss_pred ccEEEEEeCCCCcEEEccCC-CCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 664 LQSVEMYDPITDEWKMIASM-NVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~-p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
..+.+||..+.+... .+ .....-.++... ++.+++.|+.+ ..+.+||..+.
T Consensus 199 -~~i~i~d~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~-----~~i~i~~~~~~ 251 (289)
T cd00200 199 -GTIKLWDLSTGKCLG--TLRGHENGVNSVAFSPDGYLLASGSED-----GTIRVWDLRTG 251 (289)
T ss_pred -CcEEEEECCCCceec--chhhcCCceEEEEEcCCCcEEEEEcCC-----CcEEEEEcCCc
Confidence 468889987643332 22 111122223333 35566665522 35788887653
No 112
>smart00284 OLF Olfactomedin-like domains.
Probab=95.20 E-value=2.7 Score=41.64 Aligned_cols=183 Identities=13% Similarity=0.111 Sum_probs=104.7
Q ss_pred CCEEEEEccCCCCCCCCeEEEEE----CCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFD----PVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQW 583 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd----~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 583 (748)
++++|+..|.. ...+.++.|. ....++...-.+|.+-.+.+.++++|.+|.--. ....+.+||..+++-
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v 106 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETY 106 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCccccccEEEECceEEEEec-----CCccEEEEECCCCcE
Confidence 46788877643 1234566664 233444444457788888899999999998643 236799999999986
Q ss_pred EEccCCCCCCc------------ceEEEEECCEEEEEccCCCCcccCeEEEEECCCC----cEEEccCCCCCCcceeEEE
Q psy10286 584 RIVKSMQKHRS------------AGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD----EWTSVKPMLTKRCRLGVAA 647 (748)
Q Consensus 584 ~~~~~~~~~r~------------~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~----~W~~~~~~p~~r~~~~~~~ 647 (748)
.....+|.+.+ ..-.++-++-|+++=......-.-.+-+.||.+- +|.. ..+ .+....+.+
T Consensus 107 ~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~-k~sa~naFm 183 (255)
T smart00284 107 QKEPLLNGAGYNNRFPYAWGGFSDIDLAVDENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYN-KRSASNAFM 183 (255)
T ss_pred EEEEecCccccccccccccCCCccEEEEEcCCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCC-cccccccEE
Confidence 55544543211 1123444555665533322111123456777654 4554 222 223334556
Q ss_pred ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCC--CCcceEEEEE---CCEEEEE
Q psy10286 648 LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNV--MRSRVALVAN---MGKLWAI 702 (748)
Q Consensus 648 ~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~--~r~~~~~~~~---~~~l~v~ 702 (748)
+-|.+|++-..+ .....-.+.||+.+++=.. ..+|. +...++++-+ +.+||+.
T Consensus 184 vCGvLY~~~s~~-~~~~~I~yayDt~t~~~~~-~~i~f~n~y~~~s~l~YNP~d~~LY~w 241 (255)
T smart00284 184 ICGILYVTRSLG-SKGEKVFYAYDTNTGKEGH-LDIPFENMYEYISMLDYNPNDRKLYAW 241 (255)
T ss_pred EeeEEEEEccCC-CCCcEEEEEEECCCCccce-eeeeeccccccceeceeCCCCCeEEEE
Confidence 678999996322 1223346789998876333 33333 3344555555 5788887
No 113
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=95.05 E-value=3.2 Score=44.45 Aligned_cols=152 Identities=15% Similarity=0.178 Sum_probs=86.7
Q ss_pred EEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCC-
Q psy10286 505 AVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD- 581 (748)
Q Consensus 505 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~- 581 (748)
+..++++|+... + ..++.+|+.+.+ |+....--.....-....-+|+||+- ..++ .+++||..+.
T Consensus 65 ~~~dg~v~~~~~-~-----G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g-~~~g-----~~y~ld~~~G~ 132 (370)
T COG1520 65 ADGDGTVYVGTR-D-----GNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVG-SWDG-----KLYALDASTGT 132 (370)
T ss_pred EeeCCeEEEecC-C-----CcEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEe-cccc-----eEEEEECCCCc
Confidence 666899998611 1 278999999886 86543310011111122227887764 3332 7899998544
Q ss_pred -eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC--cEEEccCC-CCCCcceeEEEECCEEEEEec
Q psy10286 582 -QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD--EWTSVKPM-LTKRCRLGVAALNNKIYVCGG 657 (748)
Q Consensus 582 -~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~-p~~r~~~~~~~~~~~i~v~GG 657 (748)
.|+.-.+.. ++.....++.++.+|+... ...++++|..+. .|+.-.+. ...+.....+.-++.+|+-.
T Consensus 133 ~~W~~~~~~~-~~~~~~~v~~~~~v~~~s~------~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~- 204 (370)
T COG1520 133 LVWSRNVGGS-PYYASPPVVGDGTVYVGTD------DGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGS- 204 (370)
T ss_pred EEEEEecCCC-eEEecCcEEcCcEEEEecC------CCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEec-
Confidence 587765442 4445555666777777641 246888888754 58754332 12222222234455555543
Q ss_pred cCCCccccEEEEEeCCCC--cEEE
Q psy10286 658 YDGAIFLQSVEMYDPITD--EWKM 679 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~--~W~~ 679 (748)
.+ . ...++.+|+.+. .|..
T Consensus 205 ~~--~-~~~~~a~~~~~G~~~w~~ 225 (370)
T COG1520 205 DG--Y-DGILYALNAEDGTLKWSQ 225 (370)
T ss_pred CC--C-cceEEEEEccCCcEeeee
Confidence 22 1 236889998765 4875
No 114
>PRK05137 tolB translocation protein TolB; Provisional
Probab=94.95 E-value=7.2 Score=42.83 Aligned_cols=191 Identities=10% Similarity=-0.039 Sum_probs=94.3
Q ss_pred CCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 523 LSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 523 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
...+|..|.....=..+..-... ...-...-+|+-.++....+. ...++.+|+.+++.+.+...+....... ..-+
T Consensus 181 ~~~l~~~d~dg~~~~~lt~~~~~-v~~p~wSpDG~~lay~s~~~g--~~~i~~~dl~~g~~~~l~~~~g~~~~~~-~SPD 256 (435)
T PRK05137 181 IKRLAIMDQDGANVRYLTDGSSL-VLTPRFSPNRQEITYMSYANG--RPRVYLLDLETGQRELVGNFPGMTFAPR-FSPD 256 (435)
T ss_pred ceEEEEECCCCCCcEEEecCCCC-eEeeEECCCCCEEEEEEecCC--CCEEEEEECCCCcEEEeecCCCcccCcE-ECCC
Confidence 56788888765432222211111 111111225543333322211 2689999999988877765543222111 2224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
| +|++....++ ..+++.+|..+.....+...+..-. .....-+++ |+.....++ ...+|.+|..+...+.+
T Consensus 257 G~~la~~~~~~g---~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~l 329 (435)
T PRK05137 257 GRKVVMSLSQGG---NTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRI 329 (435)
T ss_pred CCEEEEEEecCC---CceEEEEECCCCceEEccCCCCccC-ceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEe
Confidence 4 5554443332 3579999999888777754332111 112222444 444332222 25799999888777776
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
..............-++.|++... ... ...++++|+.++..+.+
T Consensus 330 t~~~~~~~~~~~SpdG~~ia~~~~-~~~--~~~i~~~d~~~~~~~~l 373 (435)
T PRK05137 330 SFGGGRYSTPVWSPRGDLIAFTKQ-GGG--QFSIGVMKPDGSGERIL 373 (435)
T ss_pred ecCCCcccCeEECCCCCEEEEEEc-CCC--ceEEEEEECCCCceEec
Confidence 432111111111122344444432 211 24688888876655544
No 115
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=94.93 E-value=7.9 Score=43.21 Aligned_cols=118 Identities=15% Similarity=0.229 Sum_probs=66.8
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCCc-----ceeEEEEEC-CEEEEEeCCCCCCCCceEE
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFKR-----SAVGAAALN-DKLYVCGGYDGVSSLNTVE 574 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r-----~~~~~~~~~-~~iyv~GG~~~~~~~~~~~ 574 (748)
+-++.++.+|+.... ..++.+|..+.+ |+.-...+..+ .....+..+ +++|+... -..+.
T Consensus 56 sPvv~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------~g~v~ 123 (488)
T cd00216 56 TPLVVDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------DGRLV 123 (488)
T ss_pred CCEEECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------CCeEE
Confidence 345669999986542 468889988764 87643222000 111234446 88886432 24788
Q ss_pred EEeCCCCe--EEEccCCCC-C--CcceEEEEECCEEEEEccCCCC----cccCeEEEEECCCC--cEEEc
Q psy10286 575 CYEPDKDQ--WRIVKSMQK-H--RSAGGVIAFDSYVYALGGHDGL----SIFDSVERYDPKTD--EWTSV 633 (748)
Q Consensus 575 ~yd~~~~~--W~~~~~~~~-~--r~~~~~~~~~~~iyv~GG~~~~----~~~~~~~~yd~~~~--~W~~~ 633 (748)
.+|..+.+ |+.-...+. . ....+.++.++.+|+ |..+.. .....++.+|..+. .|+.-
T Consensus 124 AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 124 ALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred EEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 99988664 876543221 1 112344556777665 432111 12357899999876 48753
No 116
>PRK00178 tolB translocation protein TolB; Provisional
Probab=94.93 E-value=7.2 Score=42.74 Aligned_cols=185 Identities=9% Similarity=-0.044 Sum_probs=98.1
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++++|+.+++-+.+...+..-. .....-+| +|++....++ ..+++.+|..++..+.+..-+..-.......-+
T Consensus 223 ~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg 298 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDG---NPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDG 298 (430)
T ss_pred CEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEcccCCCCcCCeEECCCC
Confidence 479999999888777654432111 11122244 4554332222 258999999999887775432211111111123
Q ss_pred CEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC-CEEEEEeccCCCccccEEEEEeCCCCcEEEcc
Q psy10286 603 SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA 681 (748)
Q Consensus 603 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (748)
..|++....++ ...++.+|..+++++.+.... .........-+ +.|++....++ ...++.+|..+..++.+.
T Consensus 299 ~~i~f~s~~~g---~~~iy~~d~~~g~~~~lt~~~-~~~~~~~~Spdg~~i~~~~~~~~---~~~l~~~dl~tg~~~~lt 371 (430)
T PRK00178 299 RTLYFTSDRGG---KPQIYKVNVNGGRAERVTFVG-NYNARPRLSADGKTLVMVHRQDG---NFHVAAQDLQRGSVRILT 371 (430)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCEEEeecCC-CCccceEECCCCCEEEEEEccCC---ceEEEEEECCCCCEEEcc
Confidence 45665543222 257999999998887764221 11111112223 45555443222 346999999999888875
Q ss_pred CCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 682 SMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 682 ~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
...... .. ...-+|+.+++....+. ...++..+...+.
T Consensus 372 ~~~~~~-~p-~~spdg~~i~~~~~~~g--~~~l~~~~~~g~~ 409 (430)
T PRK00178 372 DTSLDE-SP-SVAPNGTMLIYATRQQG--RGVLMLVSINGRV 409 (430)
T ss_pred CCCCCC-Cc-eECCCCCEEEEEEecCC--ceEEEEEECCCCc
Confidence 432111 11 22335666666443222 2357777775543
No 117
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=94.89 E-value=0.039 Score=46.90 Aligned_cols=81 Identities=15% Similarity=0.283 Sum_probs=58.4
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|+. +|++|.+.+.+. ..|..++.|+...-.+.. ....|.+++|
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~~~---------------------------------~~~~Ipl~~v 49 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVDDE---------------------------------NNNPIPLPNV 49 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcccC---------------------------------CCCCccCCCc
Confidence 56664 788999999876 479999999975321111 1134555999
Q ss_pred CHHHHHHHHHhhhceeE-----------E--------eechhHHHHHHHHHHhcc
Q psy10286 156 DAVAMEALINFVYSGRV-----------T--------IHSQNVQSLMVVASFLQM 191 (748)
Q Consensus 156 ~~~~~~~~l~flYtg~~-----------~--------i~~~~v~~ll~~A~~l~i 191 (748)
+..+++.+++|++--.- . ++.+.+.+|+.||++|++
T Consensus 50 ~~~~L~~Vi~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 50 TSKILSKVIEYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred CHHHHHHHHHHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99999999999984321 1 555578999999999875
No 118
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.78 E-value=9 Score=43.11 Aligned_cols=202 Identities=19% Similarity=0.267 Sum_probs=108.9
Q ss_pred EEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCC--------cceeEEEEECCEEEEEeCCCCCCCCceE
Q psy10286 504 VAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFK--------RSAVGAAALNDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 504 ~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (748)
-++.++.||+.... ..++.+|..|.+ |+.-...+.. ....+.+..+++||+... + ..+
T Consensus 65 Pvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~-d-----g~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL-D-----ARL 132 (527)
T ss_pred CEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC-C-----CEE
Confidence 35669999986542 358889988754 8764432211 112234566888886432 2 468
Q ss_pred EEEeCCCCe--EEEccC-CCCC-CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEcc--CCCC-------
Q psy10286 574 ECYEPDKDQ--WRIVKS-MQKH-RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVK--PMLT------- 638 (748)
Q Consensus 574 ~~yd~~~~~--W~~~~~-~~~~-r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~--~~p~------- 638 (748)
..+|..+.+ |+.-.. .... ....+-++.++.||+-.+.........+..||.++.+ |+.-. .-+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~ 212 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADK 212 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCccccccccc
Confidence 999998775 865432 1111 1223445678888775332222234578899988764 65332 1100
Q ss_pred ----------------CCcc---eeEEEEC---CEEEEEecc----CC------CccccEEEEEeCCCCc--EEEccCCC
Q psy10286 639 ----------------KRCR---LGVAALN---NKIYVCGGY----DG------AIFLQSVEMYDPITDE--WKMIASMN 684 (748)
Q Consensus 639 ----------------~r~~---~~~~~~~---~~i~v~GG~----~~------~~~~~~v~~yd~~~~~--W~~~~~~p 684 (748)
.+.+ -+..+++ +.||+--|. ++ +.+.+++...|++|.+ |.--. .|
T Consensus 213 ~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~-~~ 291 (527)
T TIGR03075 213 PVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQT-TP 291 (527)
T ss_pred ccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeC-CC
Confidence 0100 0111333 457765443 22 2356799999999875 75422 11
Q ss_pred CCCc------ceEEEE--ECCE---EEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 685 VMRS------RVALVA--NMGK---LWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 685 ~~r~------~~~~~~--~~~~---l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
..-. ...++- .+++ +++.+..++ .++++|+.+++
T Consensus 292 ~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G-----~~~vlDr~tG~ 336 (527)
T TIGR03075 292 HDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNG-----FFYVLDRTNGK 336 (527)
T ss_pred CCCccccCCCCcEEEEeccCCcEEEEEEEeCCCc-----eEEEEECCCCc
Confidence 1111 111221 2444 777776544 47888888764
No 119
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=94.74 E-value=7.8 Score=42.21 Aligned_cols=239 Identities=15% Similarity=0.147 Sum_probs=127.3
Q ss_pred CccceEEEEeCCCCceEEccCCCcccceeE-EEEE-CCEEEEEccCCCCCC------CCeEEEEECCCCeEE--EccCCC
Q psy10286 474 DSLSTVEVFDPLVGRWQMAEAMSMLRSRVG-VAVM-KNRLYAFGGYNGSER------LSTVEEFDPVRRVWN--KVSPMC 543 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~-~~~~-~~~iyv~GG~~~~~~------~~~v~~yd~~t~~W~--~~~~~~ 543 (748)
.-...+..+|..+++...- .++ +..++ ++.. ++..+++...+.... ...++++...+..-. .+-.-+
T Consensus 147 ~e~~~l~v~Dl~tg~~l~d-~i~--~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~ 223 (414)
T PF02897_consen 147 SEWYTLRVFDLETGKFLPD-GIE--NPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEP 223 (414)
T ss_dssp SSEEEEEEEETTTTEEEEE-EEE--EEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-T
T ss_pred CceEEEEEEECCCCcCcCC-ccc--ccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeec
Confidence 4445788999998854321 112 22222 4444 435555554443322 678999998877543 332222
Q ss_pred CCcc-eeEEE-EECCEEEEEeCCCCCCCCceEEEEeCCCC-----eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcc
Q psy10286 544 FKRS-AVGAA-ALNDKLYVCGGYDGVSSLNTVECYEPDKD-----QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSI 616 (748)
Q Consensus 544 ~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 616 (748)
.... ...+. .-+++..++.-..+.. .+.++..|.... .|..+.+-. .-..+.+...++.+|+....+. .
T Consensus 224 ~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~~~-~~~~~~v~~~~~~~yi~Tn~~a--~ 299 (414)
T PF02897_consen 224 DEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSPRE-DGVEYYVDHHGDRLYILTNDDA--P 299 (414)
T ss_dssp TCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEESS-SS-EEEEEEETTEEEEEE-TT---T
T ss_pred CCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeCCC-CceEEEEEccCCEEEEeeCCCC--C
Confidence 2332 22222 2355433333222222 478999999875 788875422 2223344455899998876332 3
Q ss_pred cCeEEEEECCCCc---EE-EccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCC-CCcEEEccCCCCCCcceE
Q psy10286 617 FDSVERYDPKTDE---WT-SVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPI-TDEWKMIASMNVMRSRVA 691 (748)
Q Consensus 617 ~~~~~~yd~~~~~---W~-~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~-~~~W~~~~~~p~~r~~~~ 691 (748)
...+..++..... |. .+.+-.....--.+...++.|++..=.++ ...+.+||.. +..-..++ +|.. ....
T Consensus 300 ~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~---~~~l~v~~~~~~~~~~~~~-~p~~-g~v~ 374 (414)
T PF02897_consen 300 NGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG---SSRLRVYDLDDGKESREIP-LPEA-GSVS 374 (414)
T ss_dssp T-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT---EEEEEEEETT-TEEEEEEE-SSSS-SEEE
T ss_pred CcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC---ccEEEEEECCCCcEEeeec-CCcc-eEEe
Confidence 4578889888765 66 44333333344556667888887764433 4688999988 33333332 2221 1111
Q ss_pred EEEE---CCEEEE-EeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 692 LVAN---MGKLWA-IGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 692 ~~~~---~~~l~v-~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.... .+.+++ +.|+..- .+++.||+.+++.+.+
T Consensus 375 ~~~~~~~~~~~~~~~ss~~~P---~~~y~~d~~t~~~~~~ 411 (414)
T PF02897_consen 375 GVSGDFDSDELRFSYSSFTTP---PTVYRYDLATGELTLL 411 (414)
T ss_dssp EEES-TT-SEEEEEEEETTEE---EEEEEEETTTTCEEEE
T ss_pred ccCCCCCCCEEEEEEeCCCCC---CEEEEEECCCCCEEEE
Confidence 1111 345544 5555422 4799999999987764
No 120
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=94.66 E-value=6.8 Score=41.13 Aligned_cols=228 Identities=12% Similarity=0.075 Sum_probs=104.4
Q ss_pred ceEEEEeCCC-CceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECC-CCeEEEccCCCCCcceeEEE
Q psy10286 477 STVEVFDPLV-GRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPV-RRVWNKVSPMCFKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~-~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~-t~~W~~~~~~~~~r~~~~~~ 552 (748)
..+..||..+ ++++.+...+.....+.++.- +..+|+.++. ...+..|+.. +++++.+...+.+...+.++
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~-----~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~ 86 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRP-----EFRVLSYRIADDGALTFAAESPLPGSPTHIS 86 (330)
T ss_pred CCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECC-----CCcEEEEEECCCCceEEeeeecCCCCceEEE
Confidence 5577777753 567666554433222333332 4467775431 2456666665 45676554433322222333
Q ss_pred EE-CC-EEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCCCcceEEEEE-C-CEEEEEccCCCCcccCeEEEEECC
Q psy10286 553 AL-ND-KLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHRSAGGVIAF-D-SYVYALGGHDGLSIFDSVERYDPK 626 (748)
Q Consensus 553 ~~-~~-~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~ 626 (748)
.. ++ .+|+.+- . .+.+..||..++. ...+...+....-|.++.. + +.+|+..-. .+.+..||..
T Consensus 87 ~~~~g~~l~v~~~-~----~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~-----~~~v~v~d~~ 156 (330)
T PRK11028 87 TDHQGRFLFSASY-N----ANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLK-----EDRIRLFTLS 156 (330)
T ss_pred ECCCCCEEEEEEc-C----CCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCC-----CCEEEEEEEC
Confidence 33 44 5666542 1 2466777765431 1122222222223444444 3 466665432 3578999987
Q ss_pred CCc-EEEcc----CCCCCCcceeEEEE-C-CEEEEEeccCCCccccEEEEEeCC--CCcEEE---ccCCC----CCCcce
Q psy10286 627 TDE-WTSVK----PMLTKRCRLGVAAL-N-NKIYVCGGYDGAIFLQSVEMYDPI--TDEWKM---IASMN----VMRSRV 690 (748)
Q Consensus 627 ~~~-W~~~~----~~p~~r~~~~~~~~-~-~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~---~~~~p----~~r~~~ 690 (748)
++. ..... ..+....-+.++.. + ..+|+.... .+++.+||.. +.+++. +..+| .+|...
T Consensus 157 ~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 231 (330)
T PRK11028 157 DDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAA 231 (330)
T ss_pred CCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccce
Confidence 632 21110 11111111223333 3 467776432 3567777765 445433 33333 233222
Q ss_pred EEEEE-C-CEEEEEeCCCCCCCCCeEEEEeC--CCCceEecCC
Q psy10286 691 ALVAN-M-GKLWAIGGYDGVSNLPTVEVYDP--STDSWAFVAP 729 (748)
Q Consensus 691 ~~~~~-~-~~l~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~ 729 (748)
.+... + ..+|+... ..+.+.+|+. .+..++.+..
T Consensus 232 ~i~~~pdg~~lyv~~~-----~~~~I~v~~i~~~~~~~~~~~~ 269 (330)
T PRK11028 232 DIHITPDGRHLYACDR-----TASLISVFSVSEDGSVLSFEGH 269 (330)
T ss_pred eEEECCCCCEEEEecC-----CCCeEEEEEEeCCCCeEEEeEE
Confidence 23322 3 45676522 1235666655 3445554433
No 121
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=94.55 E-value=8.6 Score=41.86 Aligned_cols=183 Identities=11% Similarity=0.001 Sum_probs=95.8
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++++|..+++...+...+..... ....-+| .|++....++ ...++.+|..++..+.+.......... ...-+
T Consensus 214 ~~i~v~d~~~g~~~~~~~~~~~~~~-~~~spDg~~l~~~~~~~~---~~~i~~~d~~~~~~~~l~~~~~~~~~~-~~s~d 288 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASFPGMNGA-PAFSPDGSKLAVSLSKDG---NPDIYVMDLDGKQLTRLTNGPGIDTEP-SWSPD 288 (417)
T ss_pred cEEEEEECCCCCEEEeecCCCCccc-eEECCCCCEEEEEECCCC---CccEEEEECCCCCEEECCCCCCCCCCE-EECCC
Confidence 5799999998876665544322222 1122244 5665543322 257899999988877765432211111 11224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeE-EEECCEEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGV-AALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
+ +|++.....+ ...++.+|..+..+..+.... ...... ..-+++.++++...+ ....++.+|+.+..++.+
T Consensus 289 g~~l~~~s~~~g---~~~iy~~d~~~~~~~~l~~~~--~~~~~~~~spdg~~i~~~~~~~--~~~~i~~~d~~~~~~~~l 361 (417)
T TIGR02800 289 GKSIAFTSDRGG---SPQIYMMDADGGEVRRLTFRG--GYNASPSWSPDGDLIAFVHREG--GGFNIAVMDLDGGGERVL 361 (417)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCEEEeecCC--CCccCeEECCCCCEEEEEEccC--CceEEEEEeCCCCCeEEc
Confidence 4 4555433322 247999999988887764321 111222 223555555554432 235799999998877776
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
...... .......+++.+++....+.. ..+++++...+
T Consensus 362 ~~~~~~--~~p~~spdg~~l~~~~~~~~~--~~l~~~~~~g~ 399 (417)
T TIGR02800 362 TDTGLD--ESPSFAPNGRMILYATTRGGR--GVLGLVSTDGR 399 (417)
T ss_pred cCCCCC--CCceECCCCCEEEEEEeCCCc--EEEEEEECCCc
Confidence 542211 111223345444443332221 35666665443
No 122
>PTZ00421 coronin; Provisional
Probab=94.55 E-value=9.6 Score=42.41 Aligned_cols=153 Identities=12% Similarity=0.189 Sum_probs=74.5
Q ss_pred CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCc-ceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEE-E
Q psy10286 556 DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRS-AGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWT-S 632 (748)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~ 632 (748)
+.+++.||.+ ..+.+||..+.+-.. .+..... -.+++. .++.+++.|+.++ .+..||+.+.+-. .
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~--~l~~h~~~V~sla~spdG~lLatgs~Dg-----~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVE--VIKCHSDQITSLEWNLDGSLLCTTSKDK-----KLNIIDPRDGTIVSS 205 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEE--EEcCCCCceEEEEEECCCCEEEEecCCC-----EEEEEECCCCcEEEE
Confidence 4577777755 467888988764221 1111111 112222 2677778887643 5888999876522 1
Q ss_pred ccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEEccCCCCCCcceEEEEE--CCEEEEEeCCCCC
Q psy10286 633 VKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKMIASMNVMRSRVALVAN--MGKLWAIGGYDGV 708 (748)
Q Consensus 633 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~ 708 (748)
+..-...+........++..++.+|.+.. ....+..||..+.. .... .... .....+..+ ++.++++||..+
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L~lggkgD- 281 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLLYIGSKGE- 281 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEEEEEEeCC-
Confidence 11111111111111123334445554321 12578889986533 1111 1111 111222223 566666776422
Q ss_pred CCCCeEEEEeCCCCceEec
Q psy10286 709 SNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 709 ~~~~~v~~yd~~~~~W~~~ 727 (748)
..|.+||..++.....
T Consensus 282 ---g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 282 ---GNIRCFELMNERLTFC 297 (493)
T ss_pred ---CeEEEEEeeCCceEEE
Confidence 2588888888776543
No 123
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=94.46 E-value=8.3 Score=41.29 Aligned_cols=225 Identities=13% Similarity=0.141 Sum_probs=111.8
Q ss_pred eEEEEeCCCCc--eEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCC--CeEEEccCCCCCcceeEEEE
Q psy10286 478 TVEVFDPLVGR--WQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVR--RVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 478 ~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t--~~W~~~~~~~~~r~~~~~~~ 553 (748)
.++.+|+.+.+ |.....--..-..-....-+|+||+-.. ++ .+++||..+ ..|+.-.+.. .+..-..+.
T Consensus 79 ~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~i~~g~~-~g-----~~y~ld~~~G~~~W~~~~~~~-~~~~~~~v~ 151 (370)
T COG1520 79 NIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGKIYVGSW-DG-----KLYALDASTGTLVWSRNVGGS-PYYASPPVV 151 (370)
T ss_pred cEEEEeCCCCcEEecccCcCcceeccCceEEeCCeEEEecc-cc-----eEEEEECCCCcEEEEEecCCC-eEEecCcEE
Confidence 68888888876 8544321000111111222788776443 22 789999954 4587654432 333334445
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCC--eEEEccCC-CCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC--
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKD--QWRIVKSM-QKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD-- 628 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~~-~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-- 628 (748)
.++.+|+.. .-..+++.|..+. .|+.-.+. ...+.....+..++.+|+-... . ...++.+|+.++
T Consensus 152 ~~~~v~~~s------~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~---~-~~~~~a~~~~~G~~ 221 (370)
T COG1520 152 GDGTVYVGT------DDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDG---Y-DGILYALNAEDGTL 221 (370)
T ss_pred cCcEEEEec------CCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCC---C-cceEEEEEccCCcE
Confidence 577777653 1246788887755 48755443 2333333333567777765332 1 236899999765
Q ss_pred cEEEccCCCCCCcce--eEEEECCEEEEEeccCCCccccEEEEEeCCCC--cEEEccCCCCC--C-cceEEEEECCEEEE
Q psy10286 629 EWTSVKPMLTKRCRL--GVAALNNKIYVCGGYDGAIFLQSVEMYDPITD--EWKMIASMNVM--R-SRVALVANMGKLWA 701 (748)
Q Consensus 629 ~W~~~~~~p~~r~~~--~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~--~W~~~~~~p~~--r-~~~~~~~~~~~l~v 701 (748)
.|+.-...+..+..- ......+.||+-||.-.......+.++|..+. .|+.-...... + .......-+|++|+
T Consensus 222 ~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~~~~~~~~~~~~~~~~~dG~v~~ 301 (370)
T COG1520 222 KWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAGGSVQGSGLYTTPVAGADGKVYI 301 (370)
T ss_pred eeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecccEeccCCeeEEeecCCCccEEE
Confidence 487533222222211 12233444444444111111234777776654 47764331111 1 11111123677777
Q ss_pred EeCCCCCCCCCeEEEEeC
Q psy10286 702 IGGYDGVSNLPTVEVYDP 719 (748)
Q Consensus 702 ~GG~~~~~~~~~v~~yd~ 719 (748)
............+++++.
T Consensus 302 ~~~~~~~~~~~~~~~~~~ 319 (370)
T COG1520 302 GFTDNDGRGSGSLYALAD 319 (370)
T ss_pred EEeccccccccceEEEec
Confidence 643322212344566654
No 124
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=94.37 E-value=2.9 Score=43.76 Aligned_cols=122 Identities=14% Similarity=0.121 Sum_probs=81.1
Q ss_pred ceEEEEeCCCC-----eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc-EEEccCCCCCCccee
Q psy10286 571 NTVECYEPDKD-----QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE-WTSVKPMLTKRCRLG 644 (748)
Q Consensus 571 ~~~~~yd~~~~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~ 644 (748)
..+..|+.... +++.+.....+-.-.+++.+++++.+..| +.+..|+...++ +...+.+..+-...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheecceEEEEE
Confidence 66888988885 66666555444445677788999776666 378888888888 888876666667777
Q ss_pred EEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-CCEEEEEeC
Q psy10286 645 VAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-MGKLWAIGG 704 (748)
Q Consensus 645 ~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG 704 (748)
+.+.++.|++-.-..+ -.+..|+....+-..++.-..++...++..+ ++. .+++|
T Consensus 135 l~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~-~~i~~ 190 (321)
T PF03178_consen 135 LSVFKNYILVGDAMKS----VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDED-TIIVG 190 (321)
T ss_dssp EEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSS-EEEEE
T ss_pred EeccccEEEEEEcccC----EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCc-EEEEE
Confidence 7788887765443322 2456778877777777766667776666666 655 44443
No 125
>KOG2075|consensus
Probab=94.35 E-value=0.018 Score=60.14 Aligned_cols=55 Identities=24% Similarity=0.451 Sum_probs=49.3
Q ss_pred hHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcc
Q psy10286 221 RAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVL 275 (748)
Q Consensus 221 ~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~ 275 (748)
..|..+++|+|++.+.+..+|+..++.+|+.|.++.|.+.|.+||.+++...|.+
T Consensus 169 aaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~VpaLer~CVkflr~~l~~~naf 223 (521)
T KOG2075|consen 169 AAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPALERQCVKFLRKNLMADNAF 223 (521)
T ss_pred hHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCChHHH
Confidence 4566699999999999999999999999999999999999999999887766533
No 126
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=94.25 E-value=0.041 Score=44.86 Aligned_cols=45 Identities=29% Similarity=0.651 Sum_probs=40.5
Q ss_pred hhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHH
Q psy10286 218 FSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACA 262 (748)
Q Consensus 218 ~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~ 262 (748)
.+...++.+++|+|++.+.+...++.+++..|++|+++.+.+.|+
T Consensus 46 ~~~~~f~~~l~~ly~~~~~~~~~~~~~l~~~a~~~~~~~l~~~c~ 90 (90)
T smart00225 46 VSPEDFRALLEFLYTGKLDLPEENVEELLELADYLQIPGLVELCE 90 (90)
T ss_pred CCHHHHHHHHHeecCceeecCHHHHHHHHHHHHHHCcHHHHhhhC
Confidence 355678889999999999999999999999999999999998874
No 127
>KOG3840|consensus
Probab=94.21 E-value=0.55 Score=46.22 Aligned_cols=86 Identities=19% Similarity=0.322 Sum_probs=56.6
Q ss_pred CcccEEEEECCeEEeeeeeeeeccC-HHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeee
Q psy10286 73 KLCDVTIKVDDQSFTCHRIVLAATI-PYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREIT 151 (748)
Q Consensus 73 ~~~Dv~i~~~~~~~~aHk~iL~a~S-~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 151 (748)
.---++..+++..|...+.+|.+.- .-.-.||.++..-.. ..+..+.+
T Consensus 94 ~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~~-------------------------------pNErgEye 142 (438)
T KOG3840|consen 94 EGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLVS-------------------------------PNERDEFE 142 (438)
T ss_pred CCcceEEEeeeEEEEeeeeeecCCcchhhhhhhcccccccC-------------------------------CCcCCcee
Confidence 3445788889999999999997642 122355554322111 12223444
Q ss_pred e-cCCCHHHHHHHHHhhhceeEEeech-hHHHHHHHHHHh
Q psy10286 152 M-QGIDAVAMEALINFVYSGRVTIHSQ-NVQSLMVVASFL 189 (748)
Q Consensus 152 ~-~~~~~~~~~~~l~flYtg~~~i~~~-~v~~ll~~A~~l 189 (748)
+ ++++..+|+++|+|--||.+..... .|.+|-+|+++|
T Consensus 143 VAdGi~s~vFRAILdYYksG~iRCP~~vSvpELrEACDYL 182 (438)
T KOG3840|consen 143 VADGMTSSCFRAILDYYQSGTMRCPSSVSVSELREACDYL 182 (438)
T ss_pred hhcchhHHHHHHHHHHHhcCceeCCCCCchHHHHhhcceE
Confidence 4 6899999999999999999987665 566666665555
No 128
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=94.18 E-value=3.8 Score=40.84 Aligned_cols=159 Identities=19% Similarity=0.215 Sum_probs=95.3
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeC-----CCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEP-----DKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~-----~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
++++|++.|..+. .++.|.- ..+.+...-.+|.+-.+.+.++++|.+|.--.. .+.+.+||..++.
T Consensus 30 ~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~vVYngslYY~~~~-----s~~IvkydL~t~~ 100 (250)
T PF02191_consen 30 SEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGHVVYNGSLYYNKYN-----SRNIVKYDLTTRS 100 (250)
T ss_pred CCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEeceeccCCeEEECCcEEEEecC-----CceEEEEECcCCc
Confidence 4578888886543 5555532 233344444577778888889999998876543 5789999999987
Q ss_pred EEEccCCCCCCc---------c---eeEEEECCEEEEEeccCCCccccEEEEEeCCCC----cEEEccCCCCCCcceEEE
Q psy10286 630 WTSVKPMLTKRC---------R---LGVAALNNKIYVCGGYDGAIFLQSVEMYDPITD----EWKMIASMNVMRSRVALV 693 (748)
Q Consensus 630 W~~~~~~p~~r~---------~---~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~----~W~~~~~~p~~r~~~~~~ 693 (748)
-.....+|.+.. . .-.++-++-|+|+=....+...-.+-..|+.+. +|.. ..+. +....+.
T Consensus 101 v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIYat~~~~g~ivvskld~~tL~v~~tw~T--~~~k-~~~~naF 177 (250)
T PF02191_consen 101 VVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIYATEDNNGNIVVSKLDPETLSVEQTWNT--SYPK-RSAGNAF 177 (250)
T ss_pred EEEEEECCccccccccceecCCCceEEEEEcCCCEEEEEecCCCCCcEEEEeeCcccCceEEEEEe--ccCc-hhhccee
Confidence 553223332222 1 223333556777754433322234556777654 4553 2332 2233356
Q ss_pred EECCEEEEEeCCCCCCCCCeEEEEeCCCCceEe
Q psy10286 694 ANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAF 726 (748)
Q Consensus 694 ~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~ 726 (748)
.+-|.||++...+... ..=.+.||..+++=..
T Consensus 178 mvCGvLY~~~s~~~~~-~~I~yafDt~t~~~~~ 209 (250)
T PF02191_consen 178 MVCGVLYATDSYDTRD-TEIFYAFDTYTGKEED 209 (250)
T ss_pred eEeeEEEEEEECCCCC-cEEEEEEECCCCceec
Confidence 6789999998765432 2234789999887554
No 129
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=94.16 E-value=6.9 Score=39.16 Aligned_cols=155 Identities=15% Similarity=0.227 Sum_probs=89.0
Q ss_pred EccCCCC--CcceeEEEEECCEEEEEeCCC-------CC----------CCCceEEEEeCCCCe----EEEccCCCCCCc
Q psy10286 538 KVSPMCF--KRSAVGAAALNDKLYVCGGYD-------GV----------SSLNTVECYEPDKDQ----WRIVKSMQKHRS 594 (748)
Q Consensus 538 ~~~~~~~--~r~~~~~~~~~~~iyv~GG~~-------~~----------~~~~~~~~yd~~~~~----W~~~~~~~~~r~ 594 (748)
.+.+.|. +-.+-++..+++.|| |||+- +. .-.+-+..||.++++ |+.--.-+ +.
T Consensus 27 lvG~~P~SGGDTYNAV~~vDd~Iy-FGGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih~~--~~ 103 (339)
T PF09910_consen 27 LVGPPPTSGGDTYNAVEWVDDFIY-FGGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIHDK--TK 103 (339)
T ss_pred eccCCCCCCCccceeeeeecceEE-EeeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccCCc--cc
Confidence 4454443 334456666788888 68862 10 113567889998887 54433222 22
Q ss_pred ceEEE---E---ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEE
Q psy10286 595 AGGVI---A---FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVE 668 (748)
Q Consensus 595 ~~~~~---~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~ 668 (748)
..+=+ . +++++++.-+ +|. ..-.+|..|..+..-+.+..-|.. -++..++..++-+ .+.......+.
T Consensus 104 WaGEVSdIlYdP~~D~LLlAR~-DGh-~nLGvy~ldr~~g~~~~L~~~ps~---KG~~~~D~a~F~i--~~~~~g~~~i~ 176 (339)
T PF09910_consen 104 WAGEVSDILYDPYEDRLLLARA-DGH-ANLGVYSLDRRTGKAEKLSSNPSL---KGTLVHDYACFGI--NNFHKGVSGIH 176 (339)
T ss_pred cccchhheeeCCCcCEEEEEec-CCc-ceeeeEEEcccCCceeeccCCCCc---CceEeeeeEEEec--cccccCCceEE
Confidence 22211 1 3678887644 222 233689999999988887665544 3444555544433 33334578999
Q ss_pred EEeCCCCcE--EEccCC------C-CCCcceEEEEECCEEEEE
Q psy10286 669 MYDPITDEW--KMIASM------N-VMRSRVALVANMGKLWAI 702 (748)
Q Consensus 669 ~yd~~~~~W--~~~~~~------p-~~r~~~~~~~~~~~l~v~ 702 (748)
+||..+++| ...+.- + ..|..-.++...+++|.|
T Consensus 177 ~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 177 CLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred EEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 999999999 333210 1 112334456667777776
No 130
>KOG0310|consensus
Probab=94.10 E-value=8.2 Score=41.01 Aligned_cols=210 Identities=20% Similarity=0.258 Sum_probs=106.5
Q ss_pred cccccccCCCccceEEEEeCCCCce-EEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC
Q psy10286 465 TKSCLTKAGDSLSTVEVFDPLVGRW-QMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC 543 (748)
Q Consensus 465 ~~~~~~~~g~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~ 543 (748)
.++.+...|+..--+..||..+..- ..+..-..|-..--....++.+++.|+-+ .-+..+|..+.. . ...+.
T Consensus 78 ~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd-----~v~k~~d~s~a~-v-~~~l~ 150 (487)
T KOG0310|consen 78 SDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDD-----KVVKYWDLSTAY-V-QAELS 150 (487)
T ss_pred cCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCC-----ceEEEEEcCCcE-E-EEEec
Confidence 3455666667777889999544211 11111111212122234588999999843 223444555443 1 11211
Q ss_pred C---CcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCC-eEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCccc
Q psy10286 544 F---KRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKD-QWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIF 617 (748)
Q Consensus 544 ~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 617 (748)
. -...-++...+++|.+.||+++ .+-.||..+. .|.. .+.....--.+..+ ++.|-..||
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsYDg-----~vrl~DtR~~~~~v~--elnhg~pVe~vl~lpsgs~iasAgG------- 216 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSYDG-----KVRLWDTRSLTSRVV--ELNHGCPVESVLALPSGSLIASAGG------- 216 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCCCc-----eEEEEEeccCCceeE--EecCCCceeeEEEcCCCCEEEEcCC-------
Confidence 1 1111233334789999999885 4566777766 3432 22211111122223 345555555
Q ss_pred CeEEEEECCCCcEEEccCCCCCCcce----eEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceE
Q psy10286 618 DSVERYDPKTDEWTSVKPMLTKRCRL----GVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVA 691 (748)
Q Consensus 618 ~~~~~yd~~~~~W~~~~~~p~~r~~~----~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~ 691 (748)
+.+-++|..++.= ++..+.+| ++-.+ ++.-++.||.++ .+-+|| +..|+.+..+..+-.--+
T Consensus 217 n~vkVWDl~~G~q-----ll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~-----~VKVfd--~t~~Kvv~s~~~~~pvLs 284 (487)
T KOG0310|consen 217 NSVKVWDLTTGGQ-----LLTSMFNHNKTVTCLRLASDSTRLLSGSLDR-----HVKVFD--TTNYKVVHSWKYPGPVLS 284 (487)
T ss_pred CeEEEEEecCCce-----ehhhhhcccceEEEEEeecCCceEeeccccc-----ceEEEE--ccceEEEEeeecccceee
Confidence 4677777764432 12222211 11111 446677777653 578898 556777765544333333
Q ss_pred EEEE-CCEEEEEeCCCC
Q psy10286 692 LVAN-MGKLWAIGGYDG 707 (748)
Q Consensus 692 ~~~~-~~~l~v~GG~~~ 707 (748)
+.+. +++-.|+|+.++
T Consensus 285 iavs~dd~t~viGmsnG 301 (487)
T KOG0310|consen 285 IAVSPDDQTVVIGMSNG 301 (487)
T ss_pred EEecCCCceEEEecccc
Confidence 3333 778888887664
No 131
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=93.98 E-value=3.6 Score=43.05 Aligned_cols=122 Identities=16% Similarity=0.195 Sum_probs=81.3
Q ss_pred CeEEEEECCCC-----eEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe-EEEccCCCCCCcceE
Q psy10286 524 STVEEFDPVRR-----VWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ-WRIVKSMQKHRSAGG 597 (748)
Q Consensus 524 ~~v~~yd~~t~-----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~ 597 (748)
..+..|+.... +++.+.....+-.-.+++.+++++.+..| +.+..|+...+. +...+.+..+-...+
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g-------~~l~v~~l~~~~~l~~~~~~~~~~~i~s 134 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVG-------NKLYVYDLDNSKTLLKKAFYDSPFYITS 134 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEET-------TEEEEEEEETTSSEEEEEEE-BSSSEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeec-------CEEEEEEccCcccchhhheecceEEEEE
Confidence 56888988884 66666544444445677778999777666 578888888888 988887777667777
Q ss_pred EEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE-CCEEEEEe
Q psy10286 598 VIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL-NNKIYVCG 656 (748)
Q Consensus 598 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~G 656 (748)
+.+.++.|++---..+ -.+..|+....+-..++.-..++...++..+ ++..++++
T Consensus 135 l~~~~~~I~vgD~~~s----v~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~ 190 (321)
T PF03178_consen 135 LSVFKNYILVGDAMKS----VSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVG 190 (321)
T ss_dssp EEEETTEEEEEESSSS----EEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEE
T ss_pred EeccccEEEEEEcccC----EEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEE
Confidence 8888887775433322 2456778866667777765566776666666 65544443
No 132
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.89 E-value=12 Score=40.99 Aligned_cols=202 Identities=11% Similarity=-0.021 Sum_probs=99.7
Q ss_pred EEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC
Q psy10286 511 LYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ 590 (748)
Q Consensus 511 iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~ 590 (748)
.|+....+ ......+|..|.....=..+..-+. ....-...-+|+.+++..... ....++.+|..+++-+.+...+
T Consensus 167 ayv~~~~~-~~~~~~l~~~d~dg~~~~~lt~~~~-~~~~p~wSPDG~~la~~s~~~--g~~~i~i~dl~~G~~~~l~~~~ 242 (429)
T PRK03629 167 AYVVQTNG-GQFPYELRVSDYDGYNQFVVHRSPQ-PLMSPAWSPDGSKLAYVTFES--GRSALVIQTLANGAVRQVASFP 242 (429)
T ss_pred EEEEeeCC-CCcceeEEEEcCCCCCCEEeecCCC-ceeeeEEcCCCCEEEEEEecC--CCcEEEEEECCCCCeEEccCCC
Confidence 45554322 2345678888865432122211111 111112222554333322211 1257889999888766665544
Q ss_pred CCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCE-EEEEeccCCCccccE
Q psy10286 591 KHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNK-IYVCGGYDGAIFLQS 666 (748)
Q Consensus 591 ~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~-i~v~GG~~~~~~~~~ 666 (748)
..-.. ....-+| +|++....++ ..+++.+|..+.+.+.+...... .....+ +++ |+......+ ...
T Consensus 243 ~~~~~-~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~---~~~~~wSPDG~~I~f~s~~~g---~~~ 312 (429)
T PRK03629 243 RHNGA-PAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSN---NTEPTWFPDSQNLAYTSDQAG---RPQ 312 (429)
T ss_pred CCcCC-eEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCC---cCceEECCCCCEEEEEeCCCC---Cce
Confidence 32111 1122244 5655533322 24699999999888776543221 122222 444 444332222 258
Q ss_pred EEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 667 VEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 667 v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
+|.+|..+.....+..... ........-+|+.+++.+..+. ...++++|+.++.++.+..
T Consensus 313 Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g--~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 313 VYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG--QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred EEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC--CceEEEEECCCCCeEEeCC
Confidence 9999998877766633211 1111222234544444332222 2468999999998887653
No 133
>smart00284 OLF Olfactomedin-like domains.
Probab=93.85 E-value=7.6 Score=38.57 Aligned_cols=161 Identities=16% Similarity=0.167 Sum_probs=90.0
Q ss_pred CceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCc------------ceeEEEEE
Q psy10286 487 GRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKR------------SAVGAAAL 554 (748)
Q Consensus 487 ~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r------------~~~~~~~~ 554 (748)
+++.+.-.+|.+..+-+.++.+|.+|.--. ....+-+||..+++-.....+|.+. ...-.++-
T Consensus 62 ~~~~~~~~Lp~~~~GtG~VVYngslYY~~~-----~s~~iiKydL~t~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvD 136 (255)
T smart00284 62 GKNPTDHPLPHAGQGTGVVVYNGSLYFNKF-----NSHDICRFDLTTETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVD 136 (255)
T ss_pred cCCceEEECCCccccccEEEECceEEEEec-----CCccEEEEECCCCcEEEEEecCccccccccccccCCCccEEEEEc
Confidence 344333456777888889999999998543 2467999999998765444444321 11234444
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCC----eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKD----QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~----~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
.+-++|+=........--+-..||.+- +|.. ..+.+ ....+..+=|.+|++-... .....-.+.||+.+++=
T Consensus 137 E~GLWvIYat~~~~g~ivvSkLnp~tL~ve~tW~T--~~~k~-sa~naFmvCGvLY~~~s~~-~~~~~I~yayDt~t~~~ 212 (255)
T smart00284 137 ENGLWVIYATEQNAGKIVISKLNPATLTIENTWIT--TYNKR-SASNAFMICGILYVTRSLG-SKGEKVFYAYDTNTGKE 212 (255)
T ss_pred CCceEEEEeccCCCCCEEEEeeCcccceEEEEEEc--CCCcc-cccccEEEeeEEEEEccCC-CCCcEEEEEEECCCCcc
Confidence 444555522221111123345666654 4554 22222 2223444568889886421 12234478899998764
Q ss_pred EEcc-CCCCCCcceeEEEE---CCEEEEEe
Q psy10286 631 TSVK-PMLTKRCRLGVAAL---NNKIYVCG 656 (748)
Q Consensus 631 ~~~~-~~p~~r~~~~~~~~---~~~i~v~G 656 (748)
..+. +++.+...+++..+ +.+||+.-
T Consensus 213 ~~~~i~f~n~y~~~s~l~YNP~d~~LY~wd 242 (255)
T smart00284 213 GHLDIPFENMYEYISMLDYNPNDRKLYAWN 242 (255)
T ss_pred ceeeeeeccccccceeceeCCCCCeEEEEe
Confidence 4332 34444455666655 46788774
No 134
>KOG1665|consensus
Probab=93.64 E-value=0.29 Score=45.97 Aligned_cols=93 Identities=20% Similarity=0.316 Sum_probs=68.0
Q ss_pred cEEEEECCeEEeeeeeeeeccCH--HHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeec
Q psy10286 76 DVTIKVDDQSFTCHRIVLAATIP--YFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQ 153 (748)
Q Consensus 76 Dv~i~~~~~~~~aHk~iL~a~S~--~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 153 (748)
=|.+.++|+.|.--+--|-.|-| ...+||.+.-.-.. +..+. ..+-
T Consensus 10 ~vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~~-------------------------------~d~kG-a~lI 57 (302)
T KOG1665|consen 10 MVRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMCQ-------------------------------EDKKG-AVLI 57 (302)
T ss_pred hheeecCCeEEEEeehhhcccCchHHHHHHHccCCCccc-------------------------------cccCc-eEEE
Confidence 46788899998877776666644 67788876321111 01111 1114
Q ss_pred CCCHHHHHHHHHhhhceeEEeec-hhHHHHHHHHHHhcchhHHHHHHH
Q psy10286 154 GIDAVAMEALINFVYSGRVTIHS-QNVQSLMVVASFLQMQKVADACAD 200 (748)
Q Consensus 154 ~~~~~~~~~~l~flYtg~~~i~~-~~v~~ll~~A~~l~i~~l~~~c~~ 200 (748)
+=+|.-|+.+|.|+-.|.+.... -++.++++.|.+|||-.|++..++
T Consensus 58 DRsp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 58 DRSPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred ccCchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 67889999999999999986544 589999999999999999998877
No 135
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=93.52 E-value=24 Score=43.37 Aligned_cols=233 Identities=17% Similarity=0.153 Sum_probs=125.6
Q ss_pred ccccccCCCccceEEEEeCCCCceEEccCCC----------cc--cceeEEEEE--CCEEEEEccCCCCCCCCeEEEEEC
Q psy10286 466 KSCLTKAGDSLSTVEVFDPLVGRWQMAEAMS----------ML--RSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDP 531 (748)
Q Consensus 466 ~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~----------~~--r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~ 531 (748)
++.++......+.+..+|+..+.-..++... .. ..-+++++. ++.|||.-..+ +.+.++|+
T Consensus 579 ~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n-----~~Ir~id~ 653 (1057)
T PLN02919 579 NNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN-----HALREIDF 653 (1057)
T ss_pred CCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC-----ceEEEEec
Confidence 3445555555567888887654322332210 01 112455554 56789875422 46888888
Q ss_pred CCCeEEEccCC-------CC--------CcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC----
Q psy10286 532 VRRVWNKVSPM-------CF--------KRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ---- 590 (748)
Q Consensus 532 ~t~~W~~~~~~-------~~--------~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~---- 590 (748)
.++.=+.++.- .. -..-+.+++. ++.+||.... .+.++.||+.++.......-.
T Consensus 654 ~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----~~~I~v~d~~~g~v~~~~G~G~~~~ 728 (1057)
T PLN02919 654 VNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----QHQIWEYNISDGVTRVFSGDGYERN 728 (1057)
T ss_pred CCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----CCeEEEEECCCCeEEEEecCCcccc
Confidence 87765443210 00 0112334443 6789987542 257889998877654432100
Q ss_pred ---------CCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccC----CCC----------------C
Q psy10286 591 ---------KHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP----MLT----------------K 639 (748)
Q Consensus 591 ---------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~----------------~ 639 (748)
....-.+++.. ++.||+.... .+.+.+||+.++..+.+.. .+. -
T Consensus 729 ~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l 803 (1057)
T PLN02919 729 LNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLL 803 (1057)
T ss_pred CCCCccccccccCccEEEEeCCCCEEEEEECC-----CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhc
Confidence 00111223333 3469988765 3579999998766432210 000 0
Q ss_pred CcceeEEE-ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCC----------CC--cceEEEE-ECCEEEEEeCC
Q psy10286 640 RCRLGVAA-LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNV----------MR--SRVALVA-NMGKLWAIGGY 705 (748)
Q Consensus 640 r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~----------~r--~~~~~~~-~~~~l~v~GG~ 705 (748)
..-.+++. -+|.+||....+ +.|.+||+.++....+..... +. .-++++. -+|++||.-..
T Consensus 804 ~~P~Gvavd~dG~LYVADs~N-----~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~ 878 (1057)
T PLN02919 804 QHPLGVLCAKDGQIYVADSYN-----HKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTN 878 (1057)
T ss_pred cCCceeeEeCCCcEEEEECCC-----CEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECC
Confidence 01123333 257788887543 579999999888776532211 11 1123333 36889998543
Q ss_pred CCCCCCCeEEEEeCCCCc
Q psy10286 706 DGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 706 ~~~~~~~~v~~yd~~~~~ 723 (748)
.+.|.++|+.+++
T Consensus 879 -----Nn~Irvid~~~~~ 891 (1057)
T PLN02919 879 -----NSLIRYLDLNKGE 891 (1057)
T ss_pred -----CCEEEEEECCCCc
Confidence 2478899988865
No 136
>PRK03629 tolB translocation protein TolB; Provisional
Probab=93.47 E-value=14 Score=40.45 Aligned_cols=188 Identities=12% Similarity=0.024 Sum_probs=98.5
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++.+|..+++-+.+...+..-.. ....-+| +|++.....+ ...++.+|..+++.+.+..-+..-. .....-+
T Consensus 223 ~~i~i~dl~~G~~~~l~~~~~~~~~-~~~SPDG~~La~~~~~~g---~~~I~~~d~~tg~~~~lt~~~~~~~-~~~wSPD 297 (429)
T PRK03629 223 SALVIQTLANGAVRQVASFPRHNGA-PAFSPDGSKLAFALSKTG---SLNLYVMDLASGQIRQVTDGRSNNT-EPTWFPD 297 (429)
T ss_pred cEEEEEECCCCCeEEccCCCCCcCC-eEECCCCCEEEEEEcCCC---CcEEEEEECCCCCEEEccCCCCCcC-ceEECCC
Confidence 5789999988876666554432111 1222255 5555433222 2468999999888777654322111 1111124
Q ss_pred CE-EEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 SY-VYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
|+ |+......+ ...+|.+|+.+.....+..... ........-+|+ |+..+..++ ...++.+|+.++.++.+
T Consensus 298 G~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~~-~~~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~L 370 (429)
T PRK03629 298 SQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEGS-QNQDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVL 370 (429)
T ss_pred CCEEEEEeCCCC---CceEEEEECCCCCeEEeecCCC-CccCEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEe
Confidence 44 444332222 2579999998877766632211 111112222444 444443322 24789999999998887
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.... ........-+|+.+++.+.++. ...+++.+.....=+.+
T Consensus 371 t~~~--~~~~p~~SpDG~~i~~~s~~~~--~~~l~~~~~~G~~~~~l 413 (429)
T PRK03629 371 TDTF--LDETPSIAPNGTMVIYSSSQGM--GSVLNLVSTDGRFKARL 413 (429)
T ss_pred CCCC--CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCCeEEC
Confidence 6421 1111222346776666665433 23467777755543444
No 137
>PRK02889 tolB translocation protein TolB; Provisional
Probab=93.37 E-value=15 Score=40.32 Aligned_cols=225 Identities=12% Similarity=0.024 Sum_probs=109.0
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND 556 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~ 556 (748)
..+|..|........+...+.+-...+. .-+++..++..... ....++.+|..+++=..+...+.. .......-+|
T Consensus 176 ~~L~~~D~dG~~~~~l~~~~~~v~~p~w-SPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~-~~~~~~SPDG 251 (427)
T PRK02889 176 YQLQISDADGQNAQSALSSPEPIISPAW-SPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGS-NSAPAWSPDG 251 (427)
T ss_pred cEEEEECCCCCCceEeccCCCCcccceE-cCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCC-ccceEECCCC
Confidence 5677777755444444322221111111 12444333333221 234699999988765555443321 1112222255
Q ss_pred -EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEcc
Q psy10286 557 -KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVK 634 (748)
Q Consensus 557 -~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 634 (748)
+|++....++ ..++|.+|..++..+.+..-.. ........-+| .|+......+ ...+|.+|..+...+.+.
T Consensus 252 ~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~-~~~~~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~lt 324 (427)
T PRK02889 252 RTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSG-IDTEPFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRVT 324 (427)
T ss_pred CEEEEEEccCC---CceEEEEECCCCCcEECCCCCC-CCcCeEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEEe
Confidence 5554444332 2578999988777666543221 11111222244 4554432222 247899998887776664
Q ss_pred CCCCCCccee-EEEECC-EEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCC
Q psy10286 635 PMLTKRCRLG-VAALNN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLP 712 (748)
Q Consensus 635 ~~p~~r~~~~-~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~ 712 (748)
.. ...... ...-+| .|+...+.++ ...++.+|..+.+...+..-. ....-...-+++.+++....+. ..
T Consensus 325 ~~--g~~~~~~~~SpDG~~Ia~~s~~~g---~~~I~v~d~~~g~~~~lt~~~--~~~~p~~spdg~~l~~~~~~~g--~~ 395 (427)
T PRK02889 325 FT--GSYNTSPRISPDGKLLAYISRVGG---AFKLYVQDLATGQVTALTDTT--RDESPSFAPNGRYILYATQQGG--RS 395 (427)
T ss_pred cC--CCCcCceEECCCCCEEEEEEccCC---cEEEEEEECCCCCeEEccCCC--CccCceECCCCCEEEEEEecCC--CE
Confidence 21 111111 222244 4544433222 237999999988877764321 1111122235666665543322 23
Q ss_pred eEEEEeCCC
Q psy10286 713 TVEVYDPST 721 (748)
Q Consensus 713 ~v~~yd~~~ 721 (748)
.+++++...
T Consensus 396 ~l~~~~~~g 404 (427)
T PRK02889 396 VLAAVSSDG 404 (427)
T ss_pred EEEEEECCC
Confidence 577777744
No 138
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=92.70 E-value=15 Score=38.79 Aligned_cols=233 Identities=18% Similarity=0.162 Sum_probs=114.5
Q ss_pred eEEEEeCCCCceEEccCCCcccceeEEEE--ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-
Q psy10286 478 TVEVFDPLVGRWQMAEAMSMLRSRVGVAV--MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL- 554 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 554 (748)
.++.||..++++..+......-.-..++. -++.||+..........-..+..+..+.+.+.+...+..-...+-..+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVD 95 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEe
Confidence 45667778888877654322211112222 367899886543111222344455555788887665532233233333
Q ss_pred --CCEEEEEeCCCCCCCCceEEEEeCCCC-eEEEc---------cCCC---CCCcceEEEEE--CCEEEEEccCCCCccc
Q psy10286 555 --NDKLYVCGGYDGVSSLNTVECYEPDKD-QWRIV---------KSMQ---KHRSAGGVIAF--DSYVYALGGHDGLSIF 617 (748)
Q Consensus 555 --~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~---------~~~~---~~r~~~~~~~~--~~~iyv~GG~~~~~~~ 617 (748)
++.+|+.-- . -..+..|+...+ .-... .+-+ ..-.-|.+... ++.+|+..-. .
T Consensus 96 ~~g~~l~vany-~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG-----~ 165 (345)
T PF10282_consen 96 PDGRFLYVANY-G----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLG-----A 165 (345)
T ss_dssp TTSSEEEEEET-T----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETT-----T
T ss_pred cCCCEEEEEEc-c----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecC-----C
Confidence 446666532 1 246777777664 21111 1111 11223444444 3467776422 3
Q ss_pred CeEEEEECCCCc--EEEccC--CCCCCc-ceeEEEE-CCEEEEEeccCCCccccEEEEEeC--CCCcEEEc---cCCCCC
Q psy10286 618 DSVERYDPKTDE--WTSVKP--MLTKRC-RLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDP--ITDEWKMI---ASMNVM 686 (748)
Q Consensus 618 ~~~~~yd~~~~~--W~~~~~--~p~~r~-~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~---~~~p~~ 686 (748)
+.++.|+..... .+.... .|..-. .|.+..- +..+||+...+ +.|.+|+. .+..|+.+ +.+|..
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEeeecccc
Confidence 578888877665 655332 222211 1233222 35799987543 45555544 46677665 334332
Q ss_pred ---C-cceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeC--CCCceEecCCC
Q psy10286 687 ---R-SRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDP--STDSWAFVAPM 730 (748)
Q Consensus 687 ---r-~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~ 730 (748)
. ..+.+.+. +..|||--.. .++|.+|+. ++++.+.+...
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~ 287 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTV 287 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEE
T ss_pred ccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEE
Confidence 2 23333443 4567776431 356777775 55566554443
No 139
>PLN00181 protein SPA1-RELATED; Provisional
Probab=92.63 E-value=28 Score=41.64 Aligned_cols=182 Identities=13% Similarity=0.120 Sum_probs=89.5
Q ss_pred CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 509 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
+...+.|+.+ ..+..||..+++-...-.. ....-.+++.. ++.+++.||.+ ..+..||..+..-.
T Consensus 545 ~~~las~~~D-----g~v~lWd~~~~~~~~~~~~-H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~~~-- 611 (793)
T PLN00181 545 KSQVASSNFE-----GVVQVWDVARSQLVTEMKE-HEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGVSI-- 611 (793)
T ss_pred CCEEEEEeCC-----CeEEEEECCCCeEEEEecC-CCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCcEE--
Confidence 4555666643 3688889887653221111 11122233332 56778888865 35778887654321
Q ss_pred cCCCCCCcceEEEE---ECCEEEEEccCCCCcccCeEEEEECCCCc--EEEccCCCCCCcceeEEEECCEEEEEeccCCC
Q psy10286 587 KSMQKHRSAGGVIA---FDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA 661 (748)
Q Consensus 587 ~~~~~~r~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 661 (748)
..+... .....+. .++..+++|+.++ .+..||..+.. ...+..- ...-..+...++..++.||.+
T Consensus 612 ~~~~~~-~~v~~v~~~~~~g~~latgs~dg-----~I~iwD~~~~~~~~~~~~~h--~~~V~~v~f~~~~~lvs~s~D-- 681 (793)
T PLN00181 612 GTIKTK-ANICCVQFPSESGRSLAFGSADH-----KVYYYDLRNPKLPLCTMIGH--SKTVSYVRFVDSSTLVSSSTD-- 681 (793)
T ss_pred EEEecC-CCeEEEEEeCCCCCEEEEEeCCC-----eEEEEECCCCCccceEecCC--CCCEEEEEEeCCCEEEEEECC--
Confidence 111111 1112222 2467788887643 68899987543 2222110 011112222356667777654
Q ss_pred ccccEEEEEeCCCC----cEEEccCCCCCCc--ceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 662 IFLQSVEMYDPITD----EWKMIASMNVMRS--RVALVANMGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 662 ~~~~~v~~yd~~~~----~W~~~~~~p~~r~--~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
..+.+||.... .|..+..+..... .......++.+++.|+.++ .+.+|+...
T Consensus 682 ---~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~-----~v~iw~~~~ 739 (793)
T PLN00181 682 ---NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETN-----EVFVYHKAF 739 (793)
T ss_pred ---CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCC-----EEEEEECCC
Confidence 35777887542 2333322211111 1122223567777777543 577777654
No 140
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=92.07 E-value=38 Score=41.79 Aligned_cols=191 Identities=15% Similarity=0.152 Sum_probs=103.9
Q ss_pred ccccccCCCccceEEEEeCCCCceEEccCCC---------------cccceeEEEEE--CCEEEEEccCCCCCCCCeEEE
Q psy10286 466 KSCLTKAGDSLSTVEVFDPLVGRWQMAEAMS---------------MLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEE 528 (748)
Q Consensus 466 ~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~---------------~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~ 528 (748)
++.+++.....+.+..+|+.++.-..+..-. .-..-+.+++. ++.+||... ..+.+++
T Consensus 635 gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~-----~~~~I~v 709 (1057)
T PLN02919 635 KNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA-----GQHQIWE 709 (1057)
T ss_pred CCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC-----CCCeEEE
Confidence 3445554444456788888776654432100 00111234443 678998754 2356899
Q ss_pred EECCCCeEEEccCC----------C---CCcceeEEEEE-C-CEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC----C
Q psy10286 529 FDPVRRVWNKVSPM----------C---FKRSAVGAAAL-N-DKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS----M 589 (748)
Q Consensus 529 yd~~t~~W~~~~~~----------~---~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~ 589 (748)
||+.++.......- . .-..-.+++.. + +.|||.... .+.+.+||+.++....+.. .
T Consensus 710 ~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~-----n~~Irv~D~~tg~~~~~~gg~~~~ 784 (1057)
T PLN02919 710 YNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE-----SSSIRALDLKTGGSRLLAGGDPTF 784 (1057)
T ss_pred EECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC-----CCeEEEEECCCCcEEEEEeccccc
Confidence 99887765433210 0 00112233333 3 469988653 2678999988765332210 0
Q ss_pred CC--------------CCcc--eEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCC------------C
Q psy10286 590 QK--------------HRSA--GGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTK------------R 640 (748)
Q Consensus 590 ~~--------------~r~~--~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~------------r 640 (748)
+. .... .++++ -+|.+||.... .+.+.+||+.++....+...... .
T Consensus 785 ~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-----N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~ 859 (1057)
T PLN02919 785 SDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-----NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLS 859 (1057)
T ss_pred CcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-----CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccC
Confidence 00 0011 12332 36789988765 35799999998887766432110 0
Q ss_pred cceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 641 CRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 641 ~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
.-+++++- +|++||....+ +.|.++|..+.+
T Consensus 860 ~P~GIavd~dG~lyVaDt~N-----n~Irvid~~~~~ 891 (1057)
T PLN02919 860 EPAGLALGENGRLFVADTNN-----SLIRYLDLNKGE 891 (1057)
T ss_pred CceEEEEeCCCCEEEEECCC-----CEEEEEECCCCc
Confidence 11333332 67899987543 578889987765
No 141
>PRK02889 tolB translocation protein TolB; Provisional
Probab=91.99 E-value=22 Score=38.93 Aligned_cols=191 Identities=10% Similarity=-0.003 Sum_probs=92.7
Q ss_pred CCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 523 LSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 523 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
...+|..|........+..-...-.. -...-+|+-+++..... ....++.+|..+++=..+...+... ......-+
T Consensus 175 ~~~L~~~D~dG~~~~~l~~~~~~v~~-p~wSPDG~~la~~s~~~--~~~~I~~~dl~~g~~~~l~~~~g~~-~~~~~SPD 250 (427)
T PRK02889 175 RYQLQISDADGQNAQSALSSPEPIIS-PAWSPDGTKLAYVSFES--KKPVVYVHDLATGRRRVVANFKGSN-SAPAWSPD 250 (427)
T ss_pred ccEEEEECCCCCCceEeccCCCCccc-ceEcCCCCEEEEEEccC--CCcEEEEEECCCCCEEEeecCCCCc-cceEECCC
Confidence 35688888765443333221111111 11222554444433221 1256899999887655554333211 11122224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
| +|++....++ ..++|.+|..+.....+..-...... ....-+|+ |+......+ ...+|.+|..+.....+
T Consensus 251 G~~la~~~~~~g---~~~Iy~~d~~~~~~~~lt~~~~~~~~-~~wSpDG~~l~f~s~~~g---~~~Iy~~~~~~g~~~~l 323 (427)
T PRK02889 251 GRTLAVALSRDG---NSQIYTVNADGSGLRRLTQSSGIDTE-PFFSPDGRSIYFTSDRGG---APQIYRMPASGGAAQRV 323 (427)
T ss_pred CCEEEEEEccCC---CceEEEEECCCCCcEECCCCCCCCcC-eEEcCCCCEEEEEecCCC---CcEEEEEECCCCceEEE
Confidence 4 5555444333 35799999888776666432211111 12222444 544432222 25789999887777666
Q ss_pred cCCCCCCcceE-EEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 681 ASMNVMRSRVA-LVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 681 ~~~p~~r~~~~-~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
... ...... ...-+|+.+++....+. ...++++|..++..+.+.
T Consensus 324 t~~--g~~~~~~~~SpDG~~Ia~~s~~~g--~~~I~v~d~~~g~~~~lt 368 (427)
T PRK02889 324 TFT--GSYNTSPRISPDGKLLAYISRVGG--AFKLYVQDLATGQVTALT 368 (427)
T ss_pred ecC--CCCcCceEECCCCCEEEEEEccCC--cEEEEEEECCCCCeEEcc
Confidence 421 111111 12224443334332221 136899999888776553
No 142
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=91.84 E-value=0.42 Score=36.07 Aligned_cols=55 Identities=16% Similarity=0.246 Sum_probs=40.8
Q ss_pred EEEEE-CCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 77 VTIKV-DDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 77 v~i~~-~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|+|+. +|+.|.+.+.++. .|..++.||.....+.. .+ .++++
T Consensus 3 v~L~SsDg~~f~V~~~~a~-~S~~i~~ml~~~~~~~~--~I----------------------------------pl~~v 45 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREAAK-QSKTIKNMLEDLGDEDE--PI----------------------------------PLPNV 45 (62)
T ss_dssp EEEEETTSEEEEEEHHHHT-TSHHHHHHHHCTCCCGT--EE----------------------------------EETTS
T ss_pred EEEEcCCCCEEEeeHHHHH-HhHHHHHHHhhhccccc--cc----------------------------------ccCcc
Confidence 55554 7889999888765 69999999976322221 34 44899
Q ss_pred CHHHHHHHHHhhh
Q psy10286 156 DAVAMEALINFVY 168 (748)
Q Consensus 156 ~~~~~~~~l~flY 168 (748)
+.+.++.+++|++
T Consensus 46 ~~~~L~kViewc~ 58 (62)
T PF03931_consen 46 SSRILKKVIEWCE 58 (62)
T ss_dssp -HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999999987
No 143
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=91.78 E-value=15 Score=36.77 Aligned_cols=156 Identities=16% Similarity=0.258 Sum_probs=89.6
Q ss_pred EEccCCCcc--cceeEEEEECCEEEEEccCC-------C--C--------CCCCeEEEEECCCCe----EEEccCCCCCc
Q psy10286 490 QMAEAMSML--RSRVGVAVMKNRLYAFGGYN-------G--S--------ERLSTVEEFDPVRRV----WNKVSPMCFKR 546 (748)
Q Consensus 490 ~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~-------~--~--------~~~~~v~~yd~~t~~----W~~~~~~~~~r 546 (748)
+.+++.|.. -.+.++..+++.||+ ||+- + . +..+.|..||..+++ |++--. .++
T Consensus 26 elvG~~P~SGGDTYNAV~~vDd~IyF-GGWVHAPa~y~gk~~g~~~IdF~NKYSHVH~yd~e~~~VrLLWkesih--~~~ 102 (339)
T PF09910_consen 26 ELVGPPPTSGGDTYNAVEWVDDFIYF-GGWVHAPAVYEGKGDGRATIDFRNKYSHVHEYDTENDSVRLLWKESIH--DKT 102 (339)
T ss_pred eeccCCCCCCCccceeeeeecceEEE-eeeecCCceeeeccCCceEEEEeeccceEEEEEcCCCeEEEEEecccC--Ccc
Confidence 445555533 456677778988884 8763 1 0 123568899988886 655322 223
Q ss_pred ceeEEE--E----ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeE
Q psy10286 547 SAVGAA--A----LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 547 ~~~~~~--~----~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 620 (748)
...+=+ . +++++|+.-+ +|... -.+|..|.++..=+.+..-|.+ -.+.+++..+|-+ .+...-.+.+
T Consensus 103 ~WaGEVSdIlYdP~~D~LLlAR~-DGh~n-LGvy~ldr~~g~~~~L~~~ps~---KG~~~~D~a~F~i--~~~~~g~~~i 175 (339)
T PF09910_consen 103 KWAGEVSDILYDPYEDRLLLARA-DGHAN-LGVYSLDRRTGKAEKLSSNPSL---KGTLVHDYACFGI--NNFHKGVSGI 175 (339)
T ss_pred ccccchhheeeCCCcCEEEEEec-CCcce-eeeEEEcccCCceeeccCCCCc---CceEeeeeEEEec--cccccCCceE
Confidence 222222 1 1567776543 33332 3688889888888877666554 2444444444433 3233346789
Q ss_pred EEEECCCCcE--EEccC-------CCCCCcceeEEEECCEEEEE
Q psy10286 621 ERYDPKTDEW--TSVKP-------MLTKRCRLGVAALNNKIYVC 655 (748)
Q Consensus 621 ~~yd~~~~~W--~~~~~-------~p~~r~~~~~~~~~~~i~v~ 655 (748)
.+||+.+++| +..+. ....|..-.++...+++|.+
T Consensus 176 ~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ynR~faF 219 (339)
T PF09910_consen 176 HCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASAYNRLFAF 219 (339)
T ss_pred EEEEccCCeEEEEecccccCCCCCceEeeccccEEEEeeeEEEE
Confidence 9999999999 43321 11223334455666666655
No 144
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=91.75 E-value=14 Score=36.14 Aligned_cols=159 Identities=19% Similarity=0.281 Sum_probs=80.2
Q ss_pred ceeEEEEECCEEEEEccCC--CCCCCCeEEEEE---CCCCeEEE--ccCCCC-------CcceeEEEEECCEEEEEeCCC
Q psy10286 500 SRVGVAVMKNRLYAFGGYN--GSERLSTVEEFD---PVRRVWNK--VSPMCF-------KRSAVGAAALNDKLYVCGGYD 565 (748)
Q Consensus 500 ~~~~~~~~~~~iyv~GG~~--~~~~~~~v~~yd---~~t~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~~ 565 (748)
..+++.+++|++|.+=-.. .+..+...+.|| ...+.|+. ++..|. .-.-|+.+.+++.-|++|=.+
T Consensus 76 HCmSMGv~~NRLfa~iEtR~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHn 155 (367)
T PF12217_consen 76 HCMSMGVVGNRLFAVIETRTVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHN 155 (367)
T ss_dssp E-B-EEEETTEEEEEEEEEETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE
T ss_pred eeeeeeeecceeeEEEeehhhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEecc
Confidence 4467788999999764321 333444556665 34677864 344443 446688889988888988655
Q ss_pred CCCCCceE--EEEeC-----CCCeEEEccC-CCCCCcceEEEEECCEEEEEc-cCCCCcccCeEEEEECCCCcEEEcc-C
Q psy10286 566 GVSSLNTV--ECYEP-----DKDQWRIVKS-MQKHRSAGGVIAFDSYVYALG-GHDGLSIFDSVERYDPKTDEWTSVK-P 635 (748)
Q Consensus 566 ~~~~~~~~--~~yd~-----~~~~W~~~~~-~~~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~~~~W~~~~-~ 635 (748)
|...-..+ ..|.. ..-.=+.++. ....-...++-.++|.+|+.- |......-+.+.+-+.....|+.+. +
T Consensus 156 GD~sPRe~G~~yfs~~~~sp~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp 235 (367)
T PF12217_consen 156 GDVSPRELGFLYFSDAFASPGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP 235 (367)
T ss_dssp -SSSS-EEEEEEETTTTT-TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T
T ss_pred CCCCcceeeEEEecccccCCcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc
Confidence 43322222 22211 1111122221 222223345567899999986 4444444567888888888999875 2
Q ss_pred CCCCCcceeEEEECCEEEEEecc
Q psy10286 636 MLTKRCRLGVAALNNKIYVCGGY 658 (748)
Q Consensus 636 ~p~~r~~~~~~~~~~~i~v~GG~ 658 (748)
-..-....-.+.+++.||++|..
T Consensus 236 ~nvHhtnlPFakvgD~l~mFgsE 258 (367)
T PF12217_consen 236 NNVHHTNLPFAKVGDVLYMFGSE 258 (367)
T ss_dssp T---SS---EEEETTEEEEEEE-
T ss_pred ccccccCCCceeeCCEEEEEecc
Confidence 22233344457789999999963
No 145
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=91.58 E-value=20 Score=37.71 Aligned_cols=68 Identities=15% Similarity=0.117 Sum_probs=42.7
Q ss_pred CCEEEEEe--ccCC--CccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-C-C-EEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 649 NNKIYVCG--GYDG--AIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN-M-G-KLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 649 ~~~i~v~G--G~~~--~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~-~-~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
++++||.. |-.+ ....+.++++|.++ ++.+...+..+.-++++.. + . .+|+.-|. .+++.++|..+
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~~t--~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~-----s~~VsViD~~t 331 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDAKT--GKRLRKIELGHEIDSINVSQDAKPLLYALSTG-----DKTLYIFDAET 331 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEECCC--CeEEEEEeCCCceeeEEECCCCCeEEEEeCCC-----CCcEEEEECcC
Confidence 67899842 2111 12347899999765 5666666666666665554 3 4 56666542 34699999888
Q ss_pred Cc
Q psy10286 722 DS 723 (748)
Q Consensus 722 ~~ 723 (748)
.+
T Consensus 332 ~k 333 (352)
T TIGR02658 332 GK 333 (352)
T ss_pred Ce
Confidence 74
No 146
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=91.46 E-value=6 Score=40.87 Aligned_cols=234 Identities=16% Similarity=0.143 Sum_probs=104.3
Q ss_pred CCccceEEEEeCCCCceEEccCCCc-cc-------ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-
Q psy10286 473 GDSLSTVEVFDPLVGRWQMAEAMSM-LR-------SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC- 543 (748)
Q Consensus 473 g~~~~~~~~yd~~~~~W~~~~~~~~-~r-------~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~- 543 (748)
|...+-+..||+.|-+-+.--.+|. +| ...++..-+..+||.- -....+|-+.|...++-...-+.|
T Consensus 63 G~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~kvv~ei~~PG 138 (342)
T PF06433_consen 63 GERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAKKVVGEIDTPG 138 (342)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTTEEEEEEEGTS
T ss_pred ccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEc----cCCCCeEEEEECCCCceeeeecCCC
Confidence 4667789999999985432222222 13 2223222345677652 234568899999988764432222
Q ss_pred ------CCcceeEEEEECCEEEEEe-CCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcc
Q psy10286 544 ------FKRSAVGAAALNDKLYVCG-GYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSI 616 (748)
Q Consensus 544 ------~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~ 616 (748)
.+-.++++.+-+|.+..+. +.+|.........|++..+-.-.-+..........-..++|.+|-+.=.....
T Consensus 139 C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~- 217 (342)
T PF06433_consen 139 CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSA- 217 (342)
T ss_dssp EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSE-
T ss_pred EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcc-
Confidence 2222344444455444332 22222222233466665543211111111111122245677777633211111
Q ss_pred cCeEEEEECCC-----CcEEEccCCCCCCcceeEEEECCEEEEEec--cCC--CccccEEEEEeCCCCcEEEccCCCCCC
Q psy10286 617 FDSVERYDPKT-----DEWTSVKPMLTKRCRLGVAALNNKIYVCGG--YDG--AIFLQSVEMYDPITDEWKMIASMNVMR 687 (748)
Q Consensus 617 ~~~~~~yd~~~-----~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG--~~~--~~~~~~v~~yd~~~~~W~~~~~~p~~r 687 (748)
.-...+...+ ..|..- +....+.-.-.+++||.-- ..+ ...-..||+||+++.+=. ..++...
T Consensus 218 -~~~~~~~~~t~~e~~~~WrPG-----G~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv--~Ri~l~~ 289 (342)
T PF06433_consen 218 -KFGKPWSLLTDAEKADGWRPG-----GWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV--ARIPLEH 289 (342)
T ss_dssp -EEEEEEESS-HHHHHTTEEE------SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE--EEEEEEE
T ss_pred -cccCcccccCccccccCcCCc-----ceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE--EEEeCCC
Confidence 1112222211 345422 1111111122678888631 111 123468999999998532 2222222
Q ss_pred cceEEEEE-CCE--EEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 688 SRVALVAN-MGK--LWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 688 ~~~~~~~~-~~~--l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
..-++.+. +++ ||.+-+. ..++.+||..+++-
T Consensus 290 ~~~Si~Vsqd~~P~L~~~~~~-----~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 290 PIDSIAVSQDDKPLLYALSAG-----DGTLDVYDAATGKL 324 (342)
T ss_dssp EESEEEEESSSS-EEEEEETT-----TTEEEEEETTT--E
T ss_pred ccceEEEccCCCcEEEEEcCC-----CCeEEEEeCcCCcE
Confidence 12233333 444 5544231 14799999999854
No 147
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=91.35 E-value=6.7 Score=44.14 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=68.7
Q ss_pred EEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCC--------CcceEEEEECCEEEEEccCCCCcccCeE
Q psy10286 551 AAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKH--------RSAGGVIAFDSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 551 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~--------r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 620 (748)
-++.++.||+.... ..++.+|..+.+ |+.-...+.. ....+.++.+++||+... ...+
T Consensus 65 Pvv~~g~vyv~s~~------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------dg~l 132 (527)
T TIGR03075 65 PLVVDGVMYVTTSY------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------DARL 132 (527)
T ss_pred CEEECCEEEEECCC------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------CCEE
Confidence 44568999986442 368889988764 8765433211 112335667888887433 2369
Q ss_pred EEEECCCCc--EEEcc-CCCCC-CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc--EEE
Q psy10286 621 ERYDPKTDE--WTSVK-PMLTK-RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE--WKM 679 (748)
Q Consensus 621 ~~yd~~~~~--W~~~~-~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 679 (748)
+++|.++.+ |+.-. ..... ....+-++.+++||+-.+.........+..||.++.+ |+.
T Consensus 133 ~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 133 VALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 999998775 76532 11111 1223345668887764322222234578899988864 764
No 148
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.09 E-value=17 Score=36.02 Aligned_cols=224 Identities=14% Similarity=0.190 Sum_probs=120.0
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccC-CCCCcceeEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP-MCFKRSAVGAAA 553 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~r~~~~~~~ 553 (748)
...+=..||.+++-...+ ++..-.-|.+++- ++..++.-+ . ..+-++|+++..-++.+- ...+-.+.-.++
T Consensus 82 ~gaiGhLdP~tGev~~yp-Lg~Ga~Phgiv~gpdg~~Witd~-----~-~aI~R~dpkt~evt~f~lp~~~a~~nlet~v 154 (353)
T COG4257 82 TGAIGHLDPATGEVETYP-LGSGASPHGIVVGPDGSAWITDT-----G-LAIGRLDPKTLEVTRFPLPLEHADANLETAV 154 (353)
T ss_pred cccceecCCCCCceEEEe-cCCCCCCceEEECCCCCeeEecC-----c-ceeEEecCcccceEEeecccccCCCccccee
Confidence 345667888888876654 3333333444443 555665533 1 268889998876655431 222233334445
Q ss_pred E--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 554 L--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 554 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
+ .|.++..|-..-.+ +.||.++.-+..+....+--..-++.-+|.+|+.--. -+.+-+.||.+..=+
T Consensus 155 fD~~G~lWFt~q~G~yG------rLdPa~~~i~vfpaPqG~gpyGi~atpdGsvwyasla-----gnaiaridp~~~~ae 223 (353)
T COG4257 155 FDPWGNLWFTGQIGAYG------RLDPARNVISVFPAPQGGGPYGICATPDGSVWYASLA-----GNAIARIDPFAGHAE 223 (353)
T ss_pred eCCCccEEEeeccccce------ecCcccCceeeeccCCCCCCcceEECCCCcEEEEecc-----ccceEEcccccCCcc
Confidence 5 45777766432121 4566665544432221112222334458888876322 135777888777444
Q ss_pred EccCCCCC-CcceeE--EEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCC-CCCcceEEEEECCEEEEEeCCCC
Q psy10286 632 SVKPMLTK-RCRLGV--AALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN-VMRSRVALVANMGKLWAIGGYDG 707 (748)
Q Consensus 632 ~~~~~p~~-r~~~~~--~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~l~v~GG~~~ 707 (748)
.++. |.+ .....- +.-.+++++.- .....++.|||....|.+.+-.- .+|....-+--.|++++---
T Consensus 224 v~p~-P~~~~~gsRriwsdpig~~witt-----wg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea--- 294 (353)
T COG4257 224 VVPQ-PNALKAGSRRIWSDPIGRAWITT-----WGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEA--- 294 (353)
T ss_pred eecC-CCcccccccccccCccCcEEEec-----cCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecc---
Confidence 4432 222 111111 11135667652 11357899999999999864221 23333333333577776311
Q ss_pred CCCCCeEEEEeCCCCceEecC
Q psy10286 708 VSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 708 ~~~~~~v~~yd~~~~~W~~~~ 728 (748)
..+.+.+|||++-+.+.++
T Consensus 295 --~agai~rfdpeta~ftv~p 313 (353)
T COG4257 295 --DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred --ccCceeecCcccceEEEec
Confidence 2356899999999988763
No 149
>PRK13684 Ycf48-like protein; Provisional
Probab=91.09 E-value=23 Score=37.33 Aligned_cols=193 Identities=13% Similarity=0.181 Sum_probs=99.4
Q ss_pred CCceEEccCCCcccceeEEEEEC-CEEEEEccCCCCCCCCeEEEEECCCCeEEEccC-CCCCcc-eeEEEEECCEEEEEe
Q psy10286 486 VGRWQMAEAMSMLRSRVGVAVMK-NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP-MCFKRS-AVGAAALNDKLYVCG 562 (748)
Q Consensus 486 ~~~W~~~~~~~~~r~~~~~~~~~-~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~r~-~~~~~~~~~~iyv~G 562 (748)
...|++.. ++......+++..+ +..|++|-. ..+++=.-.-.+|+.+.. ++.... ..+....++..|+.|
T Consensus 34 ~~~W~~~~-~~~~~~l~~v~F~d~~~g~avG~~------G~il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G 106 (334)
T PRK13684 34 SSPWQVID-LPTEANLLDIAFTDPNHGWLVGSN------RTLLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVG 106 (334)
T ss_pred CCCcEEEe-cCCCCceEEEEEeCCCcEEEEECC------CEEEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeC
Confidence 34687775 44444555566654 467777732 234433334467988643 332222 223333355667665
Q ss_pred CCCCCCCCceEEEEeCCCCeEEEccCC-CCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCC
Q psy10286 563 GYDGVSSLNTVECYEPDKDQWRIVKSM-QKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKR 640 (748)
Q Consensus 563 G~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r 640 (748)
.. ..+++=+-.-.+|+.+... ..+......... ++.+|+.|.. ..+++-+-.-.+|+.+.... ..
T Consensus 107 ~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~g~~------G~i~~S~DgG~tW~~~~~~~-~g 173 (334)
T PRK13684 107 QP------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALGPGTAEMATNV------GAIYRTTDGGKNWEALVEDA-AG 173 (334)
T ss_pred CC------ceEEEECCCCCCCeEccCCcCCCCCceEEEEECCCcceeeecc------ceEEEECCCCCCceeCcCCC-cc
Confidence 32 2233333334589988532 122222233333 4456666543 35666666778999886433 23
Q ss_pred cceeEEEECCEEEEEeccCCCccccEEEE-EeCCCCcEEEccCCCCCCcceEEEE-ECCEEEEEeC
Q psy10286 641 CRLGVAALNNKIYVCGGYDGAIFLQSVEM-YDPITDEWKMIASMNVMRSRVALVA-NMGKLWAIGG 704 (748)
Q Consensus 641 ~~~~~~~~~~~i~v~GG~~~~~~~~~v~~-yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~l~v~GG 704 (748)
..+.+....+..+++.|..+ .++. .|....+|+.+.. +..+.-.+++. -+++++++|.
T Consensus 174 ~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~ 233 (334)
T PRK13684 174 VVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLAR 233 (334)
T ss_pred eEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEec
Confidence 34455544444444444332 2333 2444567998854 33444444444 3678888875
No 150
>PLN00181 protein SPA1-RELATED; Provisional
Probab=90.74 E-value=44 Score=40.03 Aligned_cols=171 Identities=13% Similarity=0.129 Sum_probs=82.5
Q ss_pred ceEEEEeCCCCceEEccCCC-cccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeE-EEccCCCCCcceeEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMS-MLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVW-NKVSPMCFKRSAVGAA 552 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W-~~~~~~~~~r~~~~~~ 552 (748)
..+..||..+++... .+. ....-.+++.. ++.+++.||.+ ..+..||..+..- ..+. ......++.
T Consensus 555 g~v~lWd~~~~~~~~--~~~~H~~~V~~l~~~p~~~~~L~Sgs~D-----g~v~iWd~~~~~~~~~~~---~~~~v~~v~ 624 (793)
T PLN00181 555 GVVQVWDVARSQLVT--EMKEHEKRVWSIDYSSADPTLLASGSDD-----GSVKLWSINQGVSIGTIK---TKANICCVQ 624 (793)
T ss_pred CeEEEEECCCCeEEE--EecCCCCCEEEEEEcCCCCCEEEEEcCC-----CEEEEEECCCCcEEEEEe---cCCCeEEEE
Confidence 467778877654322 121 11112233332 56777888754 3578888876532 1211 111111222
Q ss_pred E--ECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC
Q psy10286 553 A--LNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD 628 (748)
Q Consensus 553 ~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~ 628 (748)
. -++..++.|+.+ ..+..||..+.. ...... ....-..+...++..++.||.++ .+-.||....
T Consensus 625 ~~~~~g~~latgs~d-----g~I~iwD~~~~~~~~~~~~~--h~~~V~~v~f~~~~~lvs~s~D~-----~ikiWd~~~~ 692 (793)
T PLN00181 625 FPSESGRSLAFGSAD-----HKVYYYDLRNPKLPLCTMIG--HSKTVSYVRFVDSSTLVSSSTDN-----TLKLWDLSMS 692 (793)
T ss_pred EeCCCCCEEEEEeCC-----CeEEEEECCCCCccceEecC--CCCCEEEEEEeCCCEEEEEECCC-----EEEEEeCCCC
Confidence 2 257778888755 468889886542 111111 11111122233566666776643 4677776542
Q ss_pred ----cEEEccCCCCC--CcceeEEEECCEEEEEeccCCCccccEEEEEeCCC
Q psy10286 629 ----EWTSVKPMLTK--RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 629 ----~W~~~~~~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
.|..+..+... .........++..++.|+.+ ..+.+|+...
T Consensus 693 ~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D-----~~v~iw~~~~ 739 (793)
T PLN00181 693 ISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSET-----NEVFVYHKAF 739 (793)
T ss_pred ccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCC-----CEEEEEECCC
Confidence 23333222111 11112222356677777754 3577777544
No 151
>KOG2715|consensus
Probab=90.74 E-value=0.73 Score=41.22 Aligned_cols=101 Identities=12% Similarity=0.186 Sum_probs=74.3
Q ss_pred ccEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecC
Q psy10286 75 CDVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQG 154 (748)
Q Consensus 75 ~Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 154 (748)
.=|.|.|+|..|.--|.-|+--+.-|..-|-..-.+.... +..+--++-+
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~sd------------------------------rDetGAYlID 70 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLPSD------------------------------RDETGAYLID 70 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCCCC------------------------------ccccCceEec
Confidence 4466778999999999999888756655443322111110 0001122356
Q ss_pred CCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 155 IDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
=+|..|..+|+|+-.|++.++.-.-+.+|.-|+++.++.|.+...+.+...
T Consensus 71 RDP~~FgpvLNylRhgklvl~~l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 71 RDPFYFGPVLNYLRHGKLVLNKLSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred cCcchHHHHHHHHhcchhhhhhhhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 788999999999999999999977888999999999999999988887764
No 152
>PRK13684 Ycf48-like protein; Provisional
Probab=90.26 E-value=27 Score=36.78 Aligned_cols=218 Identities=11% Similarity=0.147 Sum_probs=109.9
Q ss_pred EEEEeCCCCceEEccC-CCccc-ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCC-CCCcceeEEEEE-
Q psy10286 479 VEVFDPLVGRWQMAEA-MSMLR-SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPM-CFKRSAVGAAAL- 554 (748)
Q Consensus 479 ~~~yd~~~~~W~~~~~-~~~~r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~-~~~r~~~~~~~~- 554 (748)
++.-.-.-.+|++... ++... ...++...++..|+.|.. ..+++=+-.-.+|+.+... ..+........+
T Consensus 68 il~T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~~~~~~G~~------g~i~~S~DgG~tW~~~~~~~~~~~~~~~i~~~~ 141 (334)
T PRK13684 68 LLETNDGGETWEERSLDLPEENFRLISISFKGDEGWIVGQP------SLLLHTTDGGKNWTRIPLSEKLPGSPYLITALG 141 (334)
T ss_pred EEEEcCCCCCceECccCCcccccceeeeEEcCCcEEEeCCC------ceEEEECCCCCCCeEccCCcCCCCCceEEEEEC
Confidence 3333334457988643 32222 223333345567776532 2344433344589987532 122222333344
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEE-ECCCCcEEEc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERY-DPKTDEWTSV 633 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y-d~~~~~W~~~ 633 (748)
++.+|+.|.. ..+++=+-.-.+|+.+.... .-..+.+....+..|+..|..+ .++.- |....+|+.+
T Consensus 142 ~~~~~~~g~~------G~i~~S~DgG~tW~~~~~~~-~g~~~~i~~~~~g~~v~~g~~G-----~i~~s~~~gg~tW~~~ 209 (334)
T PRK13684 142 PGTAEMATNV------GAIYRTTDGGKNWEALVEDA-AGVVRNLRRSPDGKYVAVSSRG-----NFYSTWEPGQTAWTPH 209 (334)
T ss_pred CCcceeeecc------ceEEEECCCCCCceeCcCCC-cceEEEEEECCCCeEEEEeCCc-----eEEEEcCCCCCeEEEe
Confidence 4456666542 24555555667899886433 2233444444444455544433 34433 4455679988
Q ss_pred cCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEE--eCCCCcEEEccCCCC-C-CcceEEEEE-CCEEEEEeCCCC
Q psy10286 634 KPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMY--DPITDEWKMIASMNV-M-RSRVALVAN-MGKLWAIGGYDG 707 (748)
Q Consensus 634 ~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~y--d~~~~~W~~~~~~p~-~-r~~~~~~~~-~~~l~v~GG~~~ 707 (748)
.. +..+...+++.. ++.++++|.. + ...+ +-.-.+|+.+..... . ..-++++.. ++.++++|+..
T Consensus 210 ~~-~~~~~l~~i~~~~~g~~~~vg~~-G------~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G- 280 (334)
T PRK13684 210 QR-NSSRRLQSMGFQPDGNLWMLARG-G------QIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGGGNG- 280 (334)
T ss_pred eC-CCcccceeeeEcCCCCEEEEecC-C------EEEEccCCCCCccccccCCccccccceeeEEEcCCCCEEEEcCCC-
Confidence 53 444555555544 6788888752 1 2234 223358997643211 1 112333333 67888887531
Q ss_pred CCCCCeEEEEeCCCCceEecC
Q psy10286 708 VSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 708 ~~~~~~v~~yd~~~~~W~~~~ 728 (748)
.+..-.....+|+.++
T Consensus 281 -----~v~~S~d~G~tW~~~~ 296 (334)
T PRK13684 281 -----TLLVSKDGGKTWEKDP 296 (334)
T ss_pred -----eEEEeCCCCCCCeECC
Confidence 2333334456898874
No 153
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=90.21 E-value=24 Score=36.26 Aligned_cols=221 Identities=15% Similarity=0.228 Sum_probs=98.8
Q ss_pred eEEEEeCCCCceEEccC-CCcc-c-ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEcc-CCCCCcceeEEEE
Q psy10286 478 TVEVFDPLVGRWQMAEA-MSML-R-SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVS-PMCFKRSAVGAAA 553 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~-~~~~-r-~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~-~~~~~r~~~~~~~ 553 (748)
.+..=+---.+|+.... .+.+ . ...++...++..|++|.. .-+.+-.-.-.+|+.++ +.+.+-..+....
T Consensus 38 ~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~ 111 (302)
T PF14870_consen 38 TILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------GLLLHTTDGGKTWERVPLSSKLPGSPFGITA 111 (302)
T ss_dssp EEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET------TEEEEESSTTSS-EE----TT-SS-EEEEEE
T ss_pred EEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC------ceEEEecCCCCCcEEeecCCCCCCCeeEEEE
Confidence 34444444467988753 2222 2 233445558889998742 23444445567899985 2233334444444
Q ss_pred E-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 554 L-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 554 ~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
+ ++.++++|.. ..+++-.-.-.+|+.+..-...- ...+.. -++++++++.. + +-....|+....|.
T Consensus 112 l~~~~~~l~~~~------G~iy~T~DgG~tW~~~~~~~~gs-~~~~~r~~dG~~vavs~~-G----~~~~s~~~G~~~w~ 179 (302)
T PF14870_consen 112 LGDGSAELAGDR------GAIYRTTDGGKTWQAVVSETSGS-INDITRSSDGRYVAVSSR-G----NFYSSWDPGQTTWQ 179 (302)
T ss_dssp EETTEEEEEETT--------EEEESSTTSSEEEEE-S-----EEEEEE-TTS-EEEEETT-S----SEEEEE-TT-SS-E
T ss_pred cCCCcEEEEcCC------CcEEEeCCCCCCeeEcccCCcce-eEeEEECCCCcEEEEECc-c----cEEEEecCCCccce
Confidence 4 6677777653 34566555677899875433221 222233 36676656543 2 12346788888999
Q ss_pred EccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEe--CCCCcEEEccCCCCCCcce--EEEEE--CCEEEEEeCC
Q psy10286 632 SVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYD--PITDEWKMIASMNVMRSRV--ALVAN--MGKLWAIGGY 705 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd--~~~~~W~~~~~~p~~r~~~--~~~~~--~~~l~v~GG~ 705 (748)
........|.......-++.+++++ ..+ .+..=+ ....+|.+- ..|....++ --+.+ ++.+++.||.
T Consensus 180 ~~~r~~~~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~-~~~~~~~~~~~ld~a~~~~~~~wa~gg~ 252 (302)
T PF14870_consen 180 PHNRNSSRRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEP-IIPIKTNGYGILDLAYRPPNEIWAVGGS 252 (302)
T ss_dssp EEE--SSS-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE----B-TTSS--S-EEEEEESSSS-EEEEEST
T ss_pred EEccCccceehhceecCCCCEEEEe-CCc-----EEEEccCCCCccccccc-cCCcccCceeeEEEEecCCCCEEEEeCC
Confidence 8765444444333334467888765 332 233333 344567762 223222333 32333 6899999984
Q ss_pred CCCCCCCeEEEEeCCCCceEecCC
Q psy10286 706 DGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 706 ~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
. .+++=.=...+|+..+.
T Consensus 253 G------~l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 253 G------TLLVSTDGGKTWQKDRV 270 (302)
T ss_dssp T-------EEEESSTTSS-EE-GG
T ss_pred c------cEEEeCCCCccceECcc
Confidence 2 23333334468887653
No 154
>PRK04043 tolB translocation protein TolB; Provisional
Probab=90.21 E-value=31 Score=37.54 Aligned_cols=190 Identities=9% Similarity=0.041 Sum_probs=106.6
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
.++|.+|+.+++=+.+...+. ........-|| +|.+.-..++ -.+++.+|..++.++.+...+..-....-..-+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g-~~~~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG 288 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQG-MLVVSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDD 288 (419)
T ss_pred CEEEEEECCCCcEEEEecCCC-cEEeeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCccCccEECCCC
Confidence 489999999887666654322 11112223355 5655443332 368999999999998886544311111111224
Q ss_pred CEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC-EEEEEeccCCCc---cccEEEEEeCCCCcEE
Q psy10286 603 SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN-KIYVCGGYDGAI---FLQSVEMYDPITDEWK 678 (748)
Q Consensus 603 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~---~~~~v~~yd~~~~~W~ 678 (748)
.+||+.....+ ...++.+|..+.+.+++.... .... ...-+| .|.......... ...+++.+|+.+..++
T Consensus 289 ~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g--~~~~-~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 289 KRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHG--KNNS-SVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CEEEEEECCCC---CceEEEEECCCCCeEeCccCC--CcCc-eECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 46777654432 358999999999887765321 1222 223344 454444322211 2358999999999999
Q ss_pred EccCCCCCCcceEEEEECCE-EEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 679 MIASMNVMRSRVALVANMGK-LWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~-l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
.+.... ....-...-+|+ |++.... + ....++.++...+.=..++
T Consensus 363 ~LT~~~--~~~~p~~SPDG~~I~f~~~~-~--~~~~L~~~~l~g~~~~~l~ 408 (419)
T PRK04043 363 RLTANG--VNQFPRFSSDGGSIMFIKYL-G--NQSALGIIRLNYNKSFLFP 408 (419)
T ss_pred ECCCCC--CcCCeEECCCCCEEEEEEcc-C--CcEEEEEEecCCCeeEEee
Confidence 886532 222222223555 4444332 1 2246888888776544444
No 155
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=89.83 E-value=26 Score=38.14 Aligned_cols=204 Identities=14% Similarity=0.042 Sum_probs=109.1
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCC------CCceEEEEeCCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVS------SLNTVECYEPDK 580 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~------~~~~~~~yd~~~ 580 (748)
+++..+++=..++.....+.++|..+++...- .++...... ++.. +++.++....+... .-..++++...+
T Consensus 134 dg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt 211 (414)
T PF02897_consen 134 DGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGT 211 (414)
T ss_dssp TSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS
T ss_pred CCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCC
Confidence 56666665433444455799999999954321 122222222 4444 43444444443322 257888888877
Q ss_pred CeEE--EccCCCCCCc-ceEEE-EECCEEEEEccCCCCcccCeEEEEECCCC-----cEEEccCCCCCCcceeEEEECCE
Q psy10286 581 DQWR--IVKSMQKHRS-AGGVI-AFDSYVYALGGHDGLSIFDSVERYDPKTD-----EWTSVKPMLTKRCRLGVAALNNK 651 (748)
Q Consensus 581 ~~W~--~~~~~~~~r~-~~~~~-~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-----~W~~~~~~p~~r~~~~~~~~~~~ 651 (748)
..-+ .+-.-+.... ...+. .-+++..++.-..+.. .+.++..|.... .|..+.+ +.....+.+...++.
T Consensus 212 ~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~-~s~v~~~d~~~~~~~~~~~~~l~~-~~~~~~~~v~~~~~~ 289 (414)
T PF02897_consen 212 PQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTS-ESEVYLLDLDDGGSPDAKPKLLSP-REDGVEYYVDHHGDR 289 (414)
T ss_dssp -GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSS-EEEEEEEECCCTTTSS-SEEEEEE-SSSS-EEEEEEETTE
T ss_pred ChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEcccc-CCeEEEEeccccCCCcCCcEEEeC-CCCceEEEEEccCCE
Confidence 6543 2212222222 22222 2244433333222222 478999999875 7888753 222333444556899
Q ss_pred EEEEeccCCCccccEEEEEeCCCCc---EEE-ccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCC
Q psy10286 652 IYVCGGYDGAIFLQSVEMYDPITDE---WKM-IASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPS 720 (748)
Q Consensus 652 i~v~GG~~~~~~~~~v~~yd~~~~~---W~~-~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~ 720 (748)
+|+....+ .....+..++..... |.. +.+-.....--.+...++.|++..=.++ ...+.+||+.
T Consensus 290 ~yi~Tn~~--a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~---~~~l~v~~~~ 357 (414)
T PF02897_consen 290 LYILTNDD--APNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENG---SSRLRVYDLD 357 (414)
T ss_dssp EEEEE-TT---TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETT---EEEEEEEETT
T ss_pred EEEeeCCC--CCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECC---ccEEEEEECC
Confidence 99987633 334678888887765 764 4332222344555667888888753332 3578999998
No 156
>PRK04043 tolB translocation protein TolB; Provisional
Probab=89.75 E-value=34 Score=37.27 Aligned_cols=189 Identities=8% Similarity=0.015 Sum_probs=103.2
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECC-EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEEC
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKN-RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALN 555 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~ 555 (748)
.++|.+|..+++=+.+...+..-. .....-+| +|.+.-...+ ..++|.+|..++.++.+...+.. .......-+
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g---~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~SPD 287 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKG---QPDIYLYDTNTKTLTQITNYPGI-DVNGNFVED 287 (419)
T ss_pred CEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCC---CcEEEEEECCCCcEEEcccCCCc-cCccEECCC
Confidence 489999999887777765322111 11122244 5655433222 35899999999999888664431 111122224
Q ss_pred C-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCc---ccCeEEEEECCCCcEE
Q psy10286 556 D-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLS---IFDSVERYDPKTDEWT 631 (748)
Q Consensus 556 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~---~~~~~~~yd~~~~~W~ 631 (748)
| +||......+ ...++.+|..+++.+.+..-.. .......-++.|.......+.. ...+++.+|+.++.++
T Consensus 288 G~~I~F~Sdr~g---~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~ 362 (419)
T PRK04043 288 DKRIVFVSDRLG---YPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR 362 (419)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE
Confidence 4 6776654332 3589999999988877643211 2222222244454444322111 2358999999999998
Q ss_pred EccCCCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 632 SVKPMLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
.+.... ....-...-+|+ |+..... + ....++.++...+.=..+
T Consensus 363 ~LT~~~--~~~~p~~SPDG~~I~f~~~~-~--~~~~L~~~~l~g~~~~~l 407 (419)
T PRK04043 363 RLTANG--VNQFPRFSSDGGSIMFIKYL-G--NQSALGIIRLNYNKSFLF 407 (419)
T ss_pred ECCCCC--CcCCeEECCCCCEEEEEEcc-C--CcEEEEEEecCCCeeEEe
Confidence 886532 121122223454 4444332 1 124577777766544444
No 157
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=89.75 E-value=26 Score=36.00 Aligned_cols=240 Identities=14% Similarity=0.159 Sum_probs=105.2
Q ss_pred eEeecCCCCceeecccc------cccceEEecccccccCCCccceEEEEeCCCCceEEccC-CCcccceeEEEEE-CCEE
Q psy10286 440 VEVFDPLVGRWQMAEEE------TLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEA-MSMLRSRVGVAVM-KNRL 511 (748)
Q Consensus 440 ~~~y~~~~~~W~~~~~~------~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~-~~~i 511 (748)
+..-+.--.+|+..... ....++...+...+..|.. .-+..-.-.-.+|++++- .+.|-..+.+..+ ++.+
T Consensus 39 il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~-g~ll~T~DgG~tW~~v~l~~~lpgs~~~i~~l~~~~~ 117 (302)
T PF14870_consen 39 ILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP-GLLLHTTDGGKTWERVPLSSKLPGSPFGITALGDGSA 117 (302)
T ss_dssp EEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEET-TEEEEESSTTSS-EE----TT-SS-EEEEEEEETTEE
T ss_pred EEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCC-ceEEEecCCCCCcEEeecCCCCCCCeeEEEEcCCCcE
Confidence 33334444677765421 1122333333333444432 234444555678999862 2344444555555 5677
Q ss_pred EEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCC
Q psy10286 512 YAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQK 591 (748)
Q Consensus 512 yv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~ 591 (748)
+++|.. ..+++=.-.-.+|+.+..-...-..-....-+|+++++|... +-....|+....|+.......
T Consensus 118 ~l~~~~------G~iy~T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G-----~~~~s~~~G~~~w~~~~r~~~ 186 (302)
T PF14870_consen 118 ELAGDR------GAIYRTTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRG-----NFYSSWDPGQTTWQPHNRNSS 186 (302)
T ss_dssp EEEETT--------EEEESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTS-----SEEEEE-TT-SS-EEEE--SS
T ss_pred EEEcCC------CcEEEeCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECcc-----cEEEEecCCCccceEEccCcc
Confidence 777643 346665556678998754333222222222367766666432 234467888889998865544
Q ss_pred CCcceEEEEECCEEEEEccCCCCcccCeEEEEE--CCCCcEEEccCCCCCCccee---EEEE-CCEEEEEeccCCCcccc
Q psy10286 592 HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYD--PKTDEWTSVKPMLTKRCRLG---VAAL-NNKIYVCGGYDGAIFLQ 665 (748)
Q Consensus 592 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd--~~~~~W~~~~~~p~~r~~~~---~~~~-~~~i~v~GG~~~~~~~~ 665 (748)
.|-......-++.+++++ ..+ .+..=+ -...+|.+.. .|....+++ ++.. ++.+|+.||..
T Consensus 187 ~riq~~gf~~~~~lw~~~-~Gg-----~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G------ 253 (302)
T PF14870_consen 187 RRIQSMGFSPDGNLWMLA-RGG-----QIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSG------ 253 (302)
T ss_dssp S-EEEEEE-TTS-EEEEE-TTT-----EEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT------
T ss_pred ceehhceecCCCCEEEEe-CCc-----EEEEccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCc------
Confidence 444444444477888765 222 344444 3455677632 233223332 2322 58899999843
Q ss_pred EEEEEeCCCCcEEEccC-CCCCCcceEEEE-ECCEEEEEeC
Q psy10286 666 SVEMYDPITDEWKMIAS-MNVMRSRVALVA-NMGKLWAIGG 704 (748)
Q Consensus 666 ~v~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~l~v~GG 704 (748)
.+++=.-.-++|+.... .+.+-.-..++. -+++-|++|.
T Consensus 254 ~l~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 254 TLLVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -EEEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-S
T ss_pred cEEEeCCCCccceECccccCCCCceEEEEEcCCCceEEECC
Confidence 44444456678999753 223333344444 4679999985
No 158
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=89.50 E-value=31 Score=36.46 Aligned_cols=265 Identities=18% Similarity=0.195 Sum_probs=128.5
Q ss_pred ceEeecCCCCceeecccccc-cc---eEEe-cccccccCCC---ccceEEEE--eCCCCceEEccCCCcccceeEEEEE-
Q psy10286 439 TVEVFDPLVGRWQMAEEETL-SN---AVIS-TKSCLTKAGD---SLSTVEVF--DPLVGRWQMAEAMSMLRSRVGVAVM- 507 (748)
Q Consensus 439 ~~~~y~~~~~~W~~~~~~~~-~~---~~~~-~~~~~~~~g~---~~~~~~~y--d~~~~~W~~~~~~~~~r~~~~~~~~- 507 (748)
....||..++++..+..... .+ ..+. .+..+|.... ....+..| +..+++.+.+...+......+.+.+
T Consensus 16 ~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~ 95 (345)
T PF10282_consen 16 YVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVD 95 (345)
T ss_dssp EEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEEC
T ss_pred EEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEe
Confidence 44556778888877654111 11 1111 2333333322 23345555 4444678777766533333333333
Q ss_pred --CCEEEEEccCCCCCCCCeEEEEECCCC-eEEEc---------cCC---CCCcceeEEEEE-C-CEEEEEeCCCCCCCC
Q psy10286 508 --KNRLYAFGGYNGSERLSTVEEFDPVRR-VWNKV---------SPM---CFKRSAVGAAAL-N-DKLYVCGGYDGVSSL 570 (748)
Q Consensus 508 --~~~iyv~GG~~~~~~~~~v~~yd~~t~-~W~~~---------~~~---~~~r~~~~~~~~-~-~~iyv~GG~~~~~~~ 570 (748)
+..+|+.- +. ...+.+|+...+ +-... .+- ...-..|.+... + +.+|+..= ..
T Consensus 96 ~~g~~l~van-y~----~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl-----G~ 165 (345)
T PF10282_consen 96 PDGRFLYVAN-YG----GGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL-----GA 165 (345)
T ss_dssp TTSSEEEEEE-TT----TTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET-----TT
T ss_pred cCCCEEEEEE-cc----CCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec-----CC
Confidence 44666652 11 235777776653 21111 111 122334555554 3 46777531 23
Q ss_pred ceEEEEeCCCCe--EEEccCC--CCCC-cceEEEEE-CCEEEEEccCCCCcccCeEEEE--ECCCCcEEEcc---CCCCC
Q psy10286 571 NTVECYEPDKDQ--WRIVKSM--QKHR-SAGGVIAF-DSYVYALGGHDGLSIFDSVERY--DPKTDEWTSVK---PMLTK 639 (748)
Q Consensus 571 ~~~~~yd~~~~~--W~~~~~~--~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~y--d~~~~~W~~~~---~~p~~ 639 (748)
+.++.|+...+. ....... |..- -.|.+..- +..+|+..-.+ +.+..| +..+..|+.+. .+|..
T Consensus 166 D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s-----~~v~v~~~~~~~g~~~~~~~~~~~~~~ 240 (345)
T PF10282_consen 166 DRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELS-----NTVSVFDYDPSDGSLTEIQTISTLPEG 240 (345)
T ss_dssp TEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTT-----TEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred CEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCC-----CcEEEEeecccCCceeEEEEeeecccc
Confidence 678888887765 5553322 2211 11333322 45899987653 345554 44477776653 33322
Q ss_pred ---C-cceeEEEE--CCEEEEEeccCCCccccEEEEEeC--CCCcEEEccCCCCCCcc-eEEEE--ECCEEEEEeCCCCC
Q psy10286 640 ---R-CRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDP--ITDEWKMIASMNVMRSR-VALVA--NMGKLWAIGGYDGV 708 (748)
Q Consensus 640 ---r-~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~~p~~r~~-~~~~~--~~~~l~v~GG~~~~ 708 (748)
. ..+.++.. +..+|+.-.. .+.|.+|+. .+.+.+.+...+..-.. ..+.. -++.|||.+..+
T Consensus 241 ~~~~~~~~~i~ispdg~~lyvsnr~-----~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s-- 313 (345)
T PF10282_consen 241 FTGENAPAEIAISPDGRFLYVSNRG-----SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDS-- 313 (345)
T ss_dssp SCSSSSEEEEEE-TTSSEEEEEECT-----TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTT--
T ss_pred ccccCCceeEEEecCCCEEEEEecc-----CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCC--
Confidence 1 22223333 4467776422 467777776 55666666555442211 12222 345566654322
Q ss_pred CCCCeEEEE--eCCCCceEecC
Q psy10286 709 SNLPTVEVY--DPSTDSWAFVA 728 (748)
Q Consensus 709 ~~~~~v~~y--d~~~~~W~~~~ 728 (748)
+.|.+| |.+++.++...
T Consensus 314 ---~~v~vf~~d~~tG~l~~~~ 332 (345)
T PF10282_consen 314 ---NTVSVFDIDPDTGKLTPVG 332 (345)
T ss_dssp ---TEEEEEEEETTTTEEEEEE
T ss_pred ---CeEEEEEEeCCCCcEEEec
Confidence 345555 77889998775
No 159
>PTZ00420 coronin; Provisional
Probab=88.89 E-value=46 Score=37.65 Aligned_cols=150 Identities=12% Similarity=0.160 Sum_probs=71.8
Q ss_pred EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccC
Q psy10286 557 KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP 635 (748)
Q Consensus 557 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 635 (748)
.+++.||.+ ..+..||..+.+=. ..+..+..-.++.. .+|.+++.|+.+ ..+..||+.+.+= +..
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~--~~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~--i~t 204 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRA--FQINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEI--ASS 204 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEE--EEEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcE--EEE
Confidence 455667754 46778888776411 11111111122222 267777777653 3688999987642 221
Q ss_pred CCCCCc--ceeEEE-----ECCEEEEEeccCCCccccEEEEEeCCC-CcEEEccCCCCCCcceEEEEE---CCEEEEEeC
Q psy10286 636 MLTKRC--RLGVAA-----LNNKIYVCGGYDGAIFLQSVEMYDPIT-DEWKMIASMNVMRSRVALVAN---MGKLWAIGG 704 (748)
Q Consensus 636 ~p~~r~--~~~~~~-----~~~~i~v~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG 704 (748)
+..... ...++. -++..++.+|.++. ....+.+||... ..-...-.+... .+.....+ .+.+|+.|.
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~-~~R~VkLWDlr~~~~pl~~~~ld~~-~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKN-NMREMKLWDLKNTTSALVTMSIDNA-SAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCC-CccEEEEEECCCCCCceEEEEecCC-ccceEEeeeCCCCCEEEEEE
Confidence 111110 011111 24456666666542 123688899774 221111011110 11111122 477888875
Q ss_pred CCCCCCCCeEEEEeCCCCceEec
Q psy10286 705 YDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 705 ~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.+ ..+.+|+...+.-..+
T Consensus 283 GD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 283 GD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred CC-----CeEEEEEccCCcEEee
Confidence 33 3578888766644333
No 160
>PRK10115 protease 2; Provisional
Probab=88.19 E-value=59 Score=38.02 Aligned_cols=240 Identities=11% Similarity=0.010 Sum_probs=120.3
Q ss_pred ccceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCCCC-CCCCeEEEEECCCCeE--EEccCCCCCcceeE
Q psy10286 475 SLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGS-ERLSTVEEFDPVRRVW--NKVSPMCFKRSAVG 550 (748)
Q Consensus 475 ~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~-~~~~~v~~yd~~t~~W--~~~~~~~~~r~~~~ 550 (748)
-...++..|..++... ...++..+ ..++.. ++.-+++...... .....++++++.|..- ..+-.-+.......
T Consensus 151 E~~~l~v~d~~tg~~l-~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~ 227 (686)
T PRK10115 151 RQYGIRFRNLETGNWY-PELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVS 227 (686)
T ss_pred EEEEEEEEECCCCCCC-CccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEE
Confidence 3346777788776421 11111222 334443 4443333333222 2457899999998832 22211112222323
Q ss_pred EEEE-CCEEEEEeCCCCCCCCceEEEEeC--CCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECC-
Q psy10286 551 AAAL-NDKLYVCGGYDGVSSLNTVECYEP--DKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPK- 626 (748)
Q Consensus 551 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~- 626 (748)
.... +++..++....+ ..+.++.|+. .+..|..+.+.+.. ........++.+|+.--.+.. ...+...+..
T Consensus 228 ~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ly~~tn~~~~--~~~l~~~~~~~ 302 (686)
T PRK10115 228 LHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRRKD-HEYSLDHYQHRFYLRSNRHGK--NFGLYRTRVRD 302 (686)
T ss_pred EEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECCCC-CEEEEEeCCCEEEEEEcCCCC--CceEEEecCCC
Confidence 3333 444334544333 2356777773 23444333222222 112333456788887644322 3457777776
Q ss_pred CCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE---EC-CEEEE-
Q psy10286 627 TDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA---NM-GKLWA- 701 (748)
Q Consensus 627 ~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~---~~-~~l~v- 701 (748)
+.+|+.+-+....+.--++...++.+++..-.++ ...++++|..+.....+. ++.+........ .+ +.+++
T Consensus 303 ~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~ 378 (686)
T PRK10115 303 EQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG---LTSLRQINRKTREVIGIA-FDDPAYVTWIAYNPEPETSRLRYG 378 (686)
T ss_pred cccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC---EEEEEEEcCCCCceEEec-CCCCceEeeecccCCCCCceEEEE
Confidence 5789887644333333345555788877764443 356888887666665553 112222211111 11 34433
Q ss_pred EeCCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 702 IGGYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 702 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
+.+.. .-.+++.||+.+++|+.+..
T Consensus 379 ~ss~~---~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 379 YSSMT---TPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred EecCC---CCCEEEEEECCCCcEEEEEe
Confidence 33332 33589999999999887654
No 161
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=87.64 E-value=27 Score=36.92 Aligned_cols=236 Identities=13% Similarity=0.016 Sum_probs=110.5
Q ss_pred ceEEEEeCCCCceEEccCCCcc-cceeEEEEECCEE-EEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSML-RSRVGVAVMKNRL-YAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~i-yv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..++..|..+.+-+++...+.. ..+..++.-++.+ |+-.| ..++..|+.|.+=+.+-..|..-.+.+..+.
T Consensus 60 ~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~-------~~l~~vdL~T~e~~~vy~~p~~~~g~gt~v~ 132 (386)
T PF14583_consen 60 RNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNG-------RSLRRVDLDTLEERVVYEVPDDWKGYGTWVA 132 (386)
T ss_dssp -EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETT-------TEEEEEETTT--EEEEEE--TTEEEEEEEEE
T ss_pred cceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECC-------CeEEEEECCcCcEEEEEECCcccccccceee
Confidence 5789999999999999887643 2232222225565 44444 4789999999887777777766665555544
Q ss_pred --CCEEEEEeCC----C--------------CCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECCEEEEEccCC-
Q psy10286 555 --NDKLYVCGGY----D--------------GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDSYVYALGGHD- 612 (748)
Q Consensus 555 --~~~iyv~GG~----~--------------~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~- 612 (748)
++..+ +|=. + .......+...|..+++.+.+-.-. ...+|.... .+..+.+|.=..
T Consensus 133 n~d~t~~-~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~dp~li~fCHEGp 210 (386)
T PF14583_consen 133 NSDCTKL-VGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPTDPTLIMFCHEGP 210 (386)
T ss_dssp -TTSSEE-EEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEEETTEEEEEEEEE-S-
T ss_pred CCCccEE-EEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcccCCCCCCEEEEeccCC
Confidence 23332 2210 0 0123456677788777766552211 111222222 234444442111
Q ss_pred CCcccCeEEEEECCCCcEEEccC-CCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcce
Q psy10286 613 GLSIFDSVERYDPKTDEWTSVKP-MLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRV 690 (748)
Q Consensus 613 ~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~ 690 (748)
....-..+|..|.......++.. ++....+|---+.+|. |+..+...+ +...-+..||+.+..=+.+..+| ++.|
T Consensus 211 w~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t~~~~~~~~~p--~~~H 287 (386)
T PF14583_consen 211 WDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDTGERRRLMEMP--WCSH 287 (386)
T ss_dssp TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT--EEEEEEE---SEEE
T ss_pred cceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCC-CCceEEEeeCCCCCCceEEEeCC--ceee
Confidence 11223479999988777766643 2333333444444554 444443222 22345788999987544454444 5778
Q ss_pred EEEEECCEEEEEeCCCCCC-----------CCCeEEEEeCCCCce
Q psy10286 691 ALVANMGKLWAIGGYDGVS-----------NLPTVEVYDPSTDSW 724 (748)
Q Consensus 691 ~~~~~~~~l~v~GG~~~~~-----------~~~~v~~yd~~~~~W 724 (748)
-....+++++|--|.+... ..+-+++++++++.-
T Consensus 288 ~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~ 332 (386)
T PF14583_consen 288 FMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRF 332 (386)
T ss_dssp EEE-TTSSEEEEEE-------------------EEEEEETTTTEE
T ss_pred eEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCce
Confidence 8888899999875543211 112455677776653
No 162
>KOG1724|consensus
Probab=87.54 E-value=1 Score=41.17 Aligned_cols=54 Identities=9% Similarity=0.282 Sum_probs=44.6
Q ss_pred ecCCCHHHHHHHHHhhhceeE-------------------------EeechhHHHHHHHHHHhcchhHHHHHHHHhhhc
Q psy10286 152 MQGIDAVAMEALINFVYSGRV-------------------------TIHSQNVQSLMVVASFLQMQKVADACADFLKKR 205 (748)
Q Consensus 152 ~~~~~~~~~~~~l~flYtg~~-------------------------~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~ 205 (748)
|+.|...+|..+|+|++-=.- .++..++.+|+.||++|+++.|...|+..+...
T Consensus 48 l~nV~~~iL~kVIewC~~Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~gLl~~~ck~va~m 126 (162)
T KOG1724|consen 48 LPNVTSKILKKVIEWCKKHKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKGLLDLTCKTVANM 126 (162)
T ss_pred cCccCHHHHHHHHHHHHHcccccccccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHHHHHHHHHHHHHH
Confidence 388999999999999997221 145557999999999999999999999887663
No 163
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=87.02 E-value=44 Score=35.25 Aligned_cols=107 Identities=13% Similarity=-0.024 Sum_probs=60.5
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEE-EECCEEEEEccCC----CCCCCCeEEEEECCCCeEEE-ccCCCCCcc---
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVA-VMKNRLYAFGGYN----GSERLSTVEEFDPVRRVWNK-VSPMCFKRS--- 547 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv~GG~~----~~~~~~~v~~yd~~t~~W~~-~~~~~~~r~--- 547 (748)
+.+..+|..+.+- ++..+..+..+... .-+..+|+.-.+- .+...+.+.+||+.|.+=.. ++-.+.||.
T Consensus 27 ~~v~ViD~~~~~v--~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~ 104 (352)
T TIGR02658 27 TQVYTIDGEAGRV--LGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVG 104 (352)
T ss_pred ceEEEEECCCCEE--EEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhcc
Confidence 6788999887553 33333332222232 2356799987632 23456789999999987542 322233341
Q ss_pred --eeEEEE-ECC-EEEEEeCCCCCCCCceEEEEeCCCCeEEEccCC
Q psy10286 548 --AVGAAA-LND-KLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSM 589 (748)
Q Consensus 548 --~~~~~~-~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 589 (748)
....+. -+| .+|+.- ...-+.+-+.|..+++--..-+.
T Consensus 105 ~~~~~~~ls~dgk~l~V~n----~~p~~~V~VvD~~~~kvv~ei~v 146 (352)
T TIGR02658 105 TYPWMTSLTPDNKTLLFYQ----FSPSPAVGVVDLEGKAFVRMMDV 146 (352)
T ss_pred CccceEEECCCCCEEEEec----CCCCCEEEEEECCCCcEEEEEeC
Confidence 112222 244 677752 12347889999988875443333
No 164
>PRK01742 tolB translocation protein TolB; Provisional
Probab=86.92 E-value=52 Score=36.00 Aligned_cols=153 Identities=10% Similarity=0.049 Sum_probs=75.1
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCE-EEEEccCCCCcccCeEEEEECCCCcEEEc
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSY-VYALGGHDGLSIFDSVERYDPKTDEWTSV 633 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 633 (748)
+|+..++.+.++. -..++.+|..++.-+.+...+... ......-+|+ |++....++. .++|.+|+.+.....+
T Consensus 214 DG~~la~~s~~~~--~~~i~i~dl~tg~~~~l~~~~g~~-~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~l 287 (429)
T PRK01742 214 DGSKLAYVSFENK--KSQLVVHDLRSGARKVVASFRGHN-GAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQL 287 (429)
T ss_pred CCCEEEEEEecCC--CcEEEEEeCCCCceEEEecCCCcc-CceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEee
Confidence 5543444433221 256889999887766665443211 1112222554 4443333332 3689999988877766
Q ss_pred cCCCCCCcceeEEEECCE-EEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCC
Q psy10286 634 KPMLTKRCRLGVAALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLP 712 (748)
Q Consensus 634 ~~~p~~r~~~~~~~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~ 712 (748)
......-. .....-+++ |++....++ ...+|.+|.....-..++.. .. .....-+++.+++.+. .
T Consensus 288 t~~~~~~~-~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~~---~~-~~~~SpDG~~ia~~~~------~ 353 (429)
T PRK01742 288 TSGAGNNT-EPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLVGGR---GY-SAQISADGKTLVMING------D 353 (429)
T ss_pred ccCCCCcC-CEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEecCC---CC-CccCCCCCCEEEEEcC------C
Confidence 43221111 111122444 554443322 24788888766544433211 11 1112224444434332 3
Q ss_pred eEEEEeCCCCceEec
Q psy10286 713 TVEVYDPSTDSWAFV 727 (748)
Q Consensus 713 ~v~~yd~~~~~W~~~ 727 (748)
.++.+|+.++.++.+
T Consensus 354 ~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 354 NVVKQDLTSGSTEVL 368 (429)
T ss_pred CEEEEECCCCCeEEe
Confidence 577789888887654
No 165
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=86.80 E-value=25 Score=37.15 Aligned_cols=96 Identities=10% Similarity=0.140 Sum_probs=56.7
Q ss_pred CCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC-----CCCC--CcceEEEEECCEE
Q psy10286 533 RRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS-----MQKH--RSAGGVIAFDSYV 605 (748)
Q Consensus 533 t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-----~~~~--r~~~~~~~~~~~i 605 (748)
.+.|+.+.. ..-..-.++.++|++|++.- ...++.++.+-. =+++++ +... ......+...|.+
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l~-i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDLE-FSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC------CCeEEEEecCCc-eeeecceecccccCCcccCceeEEEECCEE
Confidence 389999964 22335578888999999832 235666664311 122221 1111 1224466678889
Q ss_pred EEEccCCCC--------------cccCeEEEEECCCCcEEEccCCC
Q psy10286 606 YALGGHDGL--------------SIFDSVERYDPKTDEWTSVKPML 637 (748)
Q Consensus 606 yv~GG~~~~--------------~~~~~~~~yd~~~~~W~~~~~~p 637 (748)
+++...... ...-.|++.|.+..+|.++..+.
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLg 305 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLG 305 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccC
Confidence 998874211 01224667788889999987653
No 166
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=86.39 E-value=0.77 Score=36.53 Aligned_cols=35 Identities=14% Similarity=0.477 Sum_probs=28.7
Q ss_pred eechhHHHHHHHHHHhcchhHHHHHHHHhhhcccC
Q psy10286 174 IHSQNVQSLMVVASFLQMQKVADACADFLKKRFHP 208 (748)
Q Consensus 174 i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~~ 208 (748)
++...+.+|+.||++|+|+.|.+.|+.++...+.-
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~g 45 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKGLLDLCCKYIANMIKG 45 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcC
Confidence 46668999999999999999999999999876543
No 167
>PTZ00421 coronin; Provisional
Probab=86.14 E-value=62 Score=36.10 Aligned_cols=153 Identities=11% Similarity=0.123 Sum_probs=72.2
Q ss_pred CEEEEEccCCCCCCCCeEEEEECCCCeEEE-ccCCCCCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEE-E
Q psy10286 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNK-VSPMCFKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWR-I 585 (748)
Q Consensus 509 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~-~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~ 585 (748)
+.+++.||.+ ..+..||..+++-.. +..-. ..-.+++. .++.+++.|+.+ ..+..||+.++.-. .
T Consensus 138 ~~iLaSgs~D-----gtVrIWDl~tg~~~~~l~~h~--~~V~sla~spdG~lLatgs~D-----g~IrIwD~rsg~~v~t 205 (493)
T PTZ00421 138 MNVLASAGAD-----MVVNVWDVERGKAVEVIKCHS--DQITSLEWNLDGSLLCTTSKD-----KKLNIIDPRDGTIVSS 205 (493)
T ss_pred CCEEEEEeCC-----CEEEEEECCCCeEEEEEcCCC--CceEEEEEECCCCEEEEecCC-----CEEEEEECCCCcEEEE
Confidence 4577777754 468888988764321 11111 11122222 267778888765 46788998876521 1
Q ss_pred ccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc--EEEccCCCCCCcceeEEEE--CCEEEEEeccCCC
Q psy10286 586 VKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE--WTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGA 661 (748)
Q Consensus 586 ~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~ 661 (748)
+..-...+........++..++.+|.+.. .-..+..||+.+.. .... .... .....+..+ ++.++++||.+.
T Consensus 206 l~~H~~~~~~~~~w~~~~~~ivt~G~s~s-~Dr~VklWDlr~~~~p~~~~-~~d~-~~~~~~~~~d~d~~~L~lggkgD- 281 (493)
T PTZ00421 206 VEAHASAKSQRCLWAKRKDLIITLGCSKS-QQRQIMLWDTRKMASPYSTV-DLDQ-SSALFIPFFDEDTNLLYIGSKGE- 281 (493)
T ss_pred EecCCCCcceEEEEcCCCCeEEEEecCCC-CCCeEEEEeCCCCCCceeEe-ccCC-CCceEEEEEcCCCCEEEEEEeCC-
Confidence 11111111111111123333444443221 12468888876533 1111 1111 111222223 456666666422
Q ss_pred ccccEEEEEeCCCCcEEEc
Q psy10286 662 IFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 662 ~~~~~v~~yd~~~~~W~~~ 680 (748)
..|.+||..+......
T Consensus 282 ---g~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 282 ---GNIRCFELMNERLTFC 297 (493)
T ss_pred ---CeEEEEEeeCCceEEE
Confidence 3677888877765443
No 168
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=85.83 E-value=8 Score=34.13 Aligned_cols=82 Identities=15% Similarity=0.180 Sum_probs=57.3
Q ss_pred EEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC---CCCCCcceEEEEECCEEEEEccCCCC-cccCeEEEE-ECC
Q psy10286 552 AALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS---MQKHRSAGGVIAFDSYVYALGGHDGL-SIFDSVERY-DPK 626 (748)
Q Consensus 552 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~~~iyv~GG~~~~-~~~~~~~~y-d~~ 626 (748)
+.+||-+|-.+.. .......+.+||..+++|+.+.. ..........+.++|+|-++.-.... ...-++|.. |..
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 3568888877654 23345788999999999988854 23456667888899999887655332 123477877 456
Q ss_pred CCcEEEcc
Q psy10286 627 TDEWTSVK 634 (748)
Q Consensus 627 ~~~W~~~~ 634 (748)
+.+|++..
T Consensus 81 k~~Wsk~~ 88 (129)
T PF08268_consen 81 KQEWSKKH 88 (129)
T ss_pred cceEEEEE
Confidence 77899764
No 169
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=85.51 E-value=41 Score=33.50 Aligned_cols=181 Identities=13% Similarity=0.144 Sum_probs=97.3
Q ss_pred eEEEEeCCCCceEEccC-CCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-
Q psy10286 478 TVEVFDPLVGRWQMAEA-MSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA- 553 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~-~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~- 553 (748)
.+-++|+++..-++.+- ...+-.+.-..+. .|.++..|-..-.. ++||.++.-+..+. |..-.-.++|+
T Consensus 125 aI~R~dpkt~evt~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yG------rLdPa~~~i~vfpa-PqG~gpyGi~at 197 (353)
T COG4257 125 AIGRLDPKTLEVTRFPLPLEHADANLETAVFDPWGNLWFTGQIGAYG------RLDPARNVISVFPA-PQGGGPYGICAT 197 (353)
T ss_pred eeEEecCcccceEEeecccccCCCcccceeeCCCccEEEeeccccce------ecCcccCceeeecc-CCCCCCcceEEC
Confidence 67888988876655431 1122223333444 56788777432111 56777765443322 23333344444
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCC-cceE--EEEECCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHR-SAGG--VIAFDSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r-~~~~--~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
-+|.+|+..=. -+-+-..||.+..=+.++ .|.+. .+.- -+--.+++++.--. ...+++|||.+..|
T Consensus 198 pdGsvwyasla-----gnaiaridp~~~~aev~p-~P~~~~~gsRriwsdpig~~wittwg-----~g~l~rfdPs~~sW 266 (353)
T COG4257 198 PDGSVWYASLA-----GNAIARIDPFAGHAEVVP-QPNALKAGSRRIWSDPIGRAWITTWG-----TGSLHRFDPSVTSW 266 (353)
T ss_pred CCCcEEEEecc-----ccceEEcccccCCcceec-CCCcccccccccccCccCcEEEeccC-----CceeeEeCcccccc
Confidence 48888876211 144556677766433332 22221 1111 11124566665211 35799999999999
Q ss_pred EEccC-CCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEcc
Q psy10286 631 TSVKP-MLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA 681 (748)
Q Consensus 631 ~~~~~-~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (748)
.+-+- -..+|....-+--.+++++--- ..+.+.+||+.+.+.+.++
T Consensus 267 ~eypLPgs~arpys~rVD~~grVW~sea-----~agai~rfdpeta~ftv~p 313 (353)
T COG4257 267 IEYPLPGSKARPYSMRVDRHGRVWLSEA-----DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred eeeeCCCCCCCcceeeeccCCcEEeecc-----ccCceeecCcccceEEEec
Confidence 98742 2233433333333567776321 2467899999998887763
No 170
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=85.38 E-value=12 Score=38.74 Aligned_cols=104 Identities=16% Similarity=0.038 Sum_probs=58.0
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE-CCEEEEEccCC----CCCCCCeEEEEECCCCeEEEccCCCC-Ccce--
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM-KNRLYAFGGYN----GSERLSTVEEFDPVRRVWNKVSPMCF-KRSA-- 548 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~----~~~~~~~v~~yd~~t~~W~~~~~~~~-~r~~-- 548 (748)
..++.+|..+++- ++.++..-.++.+..- ++.+|+..=+- .+.+..-++.||..|-+=+.--.+|. +|..
T Consensus 17 ~rv~viD~d~~k~--lGmi~~g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKL--LGMIDTGFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEE--EEEEEEESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcE--EEEeecccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 5789999888774 3333444444433333 45677765421 23456679999999985432212222 1321
Q ss_pred ----eEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 549 ----VGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 549 ----~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
..... -+..+||.- ..+-.+|-+.|...++.-..
T Consensus 95 ~~~~~~~ls~dgk~~~V~N----~TPa~SVtVVDl~~~kvv~e 133 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQN----FTPATSVTVVDLAAKKVVGE 133 (342)
T ss_dssp --GGGEEE-TTSSEEEEEE----ESSSEEEEEEETTTTEEEEE
T ss_pred ccccceEEccCCcEEEEEc----cCCCCeEEEEECCCCceeee
Confidence 12222 244666652 23567899999999887543
No 171
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=85.11 E-value=9.6 Score=33.64 Aligned_cols=81 Identities=15% Similarity=0.140 Sum_probs=56.3
Q ss_pred EEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCC---CCCCcceEEEEECCEEEEEeCCCCCC-CCCeEEEE-eCC
Q psy10286 646 AALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASM---NVMRSRVALVANMGKLWAIGGYDGVS-NLPTVEVY-DPS 720 (748)
Q Consensus 646 ~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~---p~~r~~~~~~~~~~~l~v~GG~~~~~-~~~~v~~y-d~~ 720 (748)
+.++|-+|-.+-. .....+.|..||..+.+|+.+..+ .........+.++|+|-++.-..... ..-++|++ |.+
T Consensus 2 icinGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 2 ICINGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EEECcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 3467888777655 333457899999999999887543 23455677888899999986544332 23467887 566
Q ss_pred CCceEec
Q psy10286 721 TDSWAFV 727 (748)
Q Consensus 721 ~~~W~~~ 727 (748)
+.+|...
T Consensus 81 k~~Wsk~ 87 (129)
T PF08268_consen 81 KQEWSKK 87 (129)
T ss_pred cceEEEE
Confidence 7899864
No 172
>KOG2716|consensus
Probab=84.98 E-value=1.1 Score=43.41 Aligned_cols=60 Identities=13% Similarity=0.316 Sum_probs=48.1
Q ss_pred ccCCcccchhhhhhhhHHHHHHHhhcceeEEE--ecccHHHHHHHhhhcCcHHHHHHHHHHHhh
Q psy10286 206 FHPNNVLDYYVLFSCRAMEALINFAYSGRVTI--HSQNVQSLMVVASFLQMQKVADACADFLKK 267 (748)
Q Consensus 206 l~~~ncl~i~~~~~~~~~~~ll~~~y~~~~~~--~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~ 267 (748)
.+.++|+-|.+- .-+|..+++|++.|.+.+ +.+++.+|+..|++|.|++|.+.|..-+..
T Consensus 42 ~d~s~~IFIDRS--pKHF~~ILNfmRdGdv~LPe~~kel~El~~EA~fYlL~~Lv~~C~~~i~~ 103 (230)
T KOG2716|consen 42 KDESGCIFIDRS--PKHFDTILNFMRDGDVDLPESEKELKELLREAEFYLLDGLVELCQSAIAR 103 (230)
T ss_pred cCCcCcEEecCC--hhHHHHHHHhhhcccccCccchHHHHHHHHHHHHhhHHHHHHHHHHHhhh
Confidence 455778777663 446777999999777654 556788999999999999999999988764
No 173
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=84.93 E-value=0.95 Score=45.88 Aligned_cols=79 Identities=22% Similarity=0.308 Sum_probs=48.1
Q ss_pred cchhhhhhhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHH
Q psy10286 212 LDYYVLFSCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSE 291 (748)
Q Consensus 212 l~i~~~~~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~ 291 (748)
++|..-.+...|+=|++|+....-.++..|+..|+..++|+++ ++|.+
T Consensus 47 idisVhCDv~iF~WLm~yv~~~~p~l~~~NvvsIliSS~FL~M--------------------------------~~Lve 94 (317)
T PF11822_consen 47 IDISVHCDVHIFEWLMRYVKGEPPSLTPSNVVSILISSEFLQM--------------------------------ESLVE 94 (317)
T ss_pred cceEEecChhHHHHHHHHhhcCCCcCCcCcEEEeEehhhhhcc--------------------------------HHHHH
Confidence 3333334445566688887664444555555555555555554 56666
Q ss_pred HHHHHHHHhhhhhcc-CcccccCCHHhHhccc
Q psy10286 292 AADKYVQQYFHEVSM-SDEFIGLGVNEVNDIV 322 (748)
Q Consensus 292 ~~~~~i~~~~~~l~~-~~~f~~L~~~~l~~il 322 (748)
.|+.|+..|+.+++. ...+.-|+.+.|..+.
T Consensus 95 ~cl~y~~~~~~~Iv~~~~nl~Cl~~~Ll~RLa 126 (317)
T PF11822_consen 95 ECLQYCHDHMSEIVASPCNLNCLNDNLLTRLA 126 (317)
T ss_pred HHHHHHHHhHHHHHcCCCCcccCCHHHHHHHH
Confidence 667777778888776 4567778777776663
No 174
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=84.82 E-value=61 Score=34.90 Aligned_cols=217 Identities=9% Similarity=0.032 Sum_probs=105.3
Q ss_pred EEEeCCCCceEEccC-C--Cccc--ceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeEEEE
Q psy10286 480 EVFDPLVGRWQMAEA-M--SMLR--SRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVGAAA 553 (748)
Q Consensus 480 ~~yd~~~~~W~~~~~-~--~~~r--~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~ 553 (748)
..-+-.-++|++... . ...+ ...++...++..|++|-. ..+..=+-.-.+|+.++..+ .+-.......
T Consensus 113 L~T~DGG~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~------G~il~T~DgG~tW~~~~~~~~~p~~~~~i~~ 186 (398)
T PLN00033 113 LETKDGGKTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP------AILLHTSDGGETWERIPLSPKLPGEPVLIKA 186 (398)
T ss_pred EEEcCCCCCceECccCcccccccccceeeeEEECCEEEEEcCc------eEEEEEcCCCCCceECccccCCCCCceEEEE
Confidence 333334457887531 1 1111 234555567888888642 13333333456899875421 1111233333
Q ss_pred E-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCC----CCC--------------cceEEEE-ECCEEEEEccCCC
Q psy10286 554 L-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQ----KHR--------------SAGGVIA-FDSYVYALGGHDG 613 (748)
Q Consensus 554 ~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~----~~r--------------~~~~~~~-~~~~iyv~GG~~~ 613 (748)
+ ++..+++|.. ..+++-+-...+|+.....+ ..+ ....+.. -++.++++|-.
T Consensus 187 ~~~~~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~~y~Gsf~~v~~~~dG~~~~vg~~-- 258 (398)
T PLN00033 187 TGPKSAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGASYYTGTFSTVNRSPDGDYVAVSSR-- 258 (398)
T ss_pred ECCCceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccceeccceeeEEEcCCCCEEEEECC--
Confidence 4 4567777742 23555555567898862111 111 1111222 24455555542
Q ss_pred CcccCeEEE-EECCCCcEEEccCCCCCCcceeEE-EECCEEEEEeccCCCccccEEEEEeCCCCcE-----EEccCCCCC
Q psy10286 614 LSIFDSVER-YDPKTDEWTSVKPMLTKRCRLGVA-ALNNKIYVCGGYDGAIFLQSVEMYDPITDEW-----KMIASMNVM 686 (748)
Q Consensus 614 ~~~~~~~~~-yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-----~~~~~~p~~ 686 (748)
..+++ .|.....|+.+.... ++...++. ..++.++++|.. ..+..-+.....| ..+.. +..
T Consensus 259 ----G~~~~s~d~G~~~W~~~~~~~-~~~l~~v~~~~dg~l~l~g~~------G~l~~S~d~G~~~~~~~f~~~~~-~~~ 326 (398)
T PLN00033 259 ----GNFYLTWEPGQPYWQPHNRAS-ARRIQNMGWRADGGLWLLTRG------GGLYVSKGTGLTEEDFDFEEADI-KSR 326 (398)
T ss_pred ----ccEEEecCCCCcceEEecCCC-ccceeeeeEcCCCCEEEEeCC------ceEEEecCCCCcccccceeeccc-CCC
Confidence 23443 344444599885433 33333333 347888888753 2333333333434 44332 222
Q ss_pred Ccc-eEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEecC
Q psy10286 687 RSR-VALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 687 r~~-~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 728 (748)
+.. ..+... ++.++++|... .+..-.....+|+...
T Consensus 327 ~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 327 GFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDK 364 (398)
T ss_pred CcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEcc
Confidence 222 333333 67888888632 2444455567888764
No 175
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=84.09 E-value=51 Score=33.33 Aligned_cols=215 Identities=13% Similarity=0.131 Sum_probs=103.5
Q ss_pred CCCceEEccC---CC--cccceeEEEEE--CCEEEEEc--cCCCC-CCCCe-EEEEECC-CCeEEEccCCCC--------
Q psy10286 485 LVGRWQMAEA---MS--MLRSRVGVAVM--KNRLYAFG--GYNGS-ERLST-VEEFDPV-RRVWNKVSPMCF-------- 544 (748)
Q Consensus 485 ~~~~W~~~~~---~~--~~r~~~~~~~~--~~~iyv~G--G~~~~-~~~~~-v~~yd~~-t~~W~~~~~~~~-------- 544 (748)
.-.+|..... .+ ..+.+..+.+. +|+|+++. +.... ..... .+..... -.+|+....++.
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 3457976432 22 22333333332 88888886 22211 11112 1233333 457987654321
Q ss_pred CcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCC-CCeEEEccCCC-CCCcceEEEE-E-CCEEEEEccCCCCcccCeE
Q psy10286 545 KRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPD-KDQWRIVKSMQ-KHRSAGGVIA-F-DSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 545 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~-~~~W~~~~~~~-~~r~~~~~~~-~-~~~iyv~GG~~~~~~~~~~ 620 (748)
+-.......-+|.+++..-............|... ..+|+.....+ .......+.+ . +|.|+++.-..... ...
T Consensus 108 ~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~ 185 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIY 185 (275)
T ss_dssp CSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEE
T ss_pred cceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEE
Confidence 11222234448888876211111122333444444 55699887664 2233333333 3 77888886542111 223
Q ss_pred EEEECC-CCcEEEcc--CCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCC---CcceE-E
Q psy10286 621 ERYDPK-TDEWTSVK--PMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM---RSRVA-L 692 (748)
Q Consensus 621 ~~yd~~-~~~W~~~~--~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~---r~~~~-~ 692 (748)
..+... -.+|+... .+|.+.....++.. +++++++.........-.++.-.....+|.....+... .+++. +
T Consensus 186 ~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~~~~~~Y~~~ 265 (275)
T PF13088_consen 186 ISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGPNGDSGYPSL 265 (275)
T ss_dssp EEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE-CCEEEEEE
T ss_pred EEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCCCCcEECCee
Confidence 333333 45799865 45555555555554 57888887732222222333333447889876444332 24444 3
Q ss_pred EEE-CCEEEE
Q psy10286 693 VAN-MGKLWA 701 (748)
Q Consensus 693 ~~~-~~~l~v 701 (748)
+.. +|+|+|
T Consensus 266 ~~~~dg~l~i 275 (275)
T PF13088_consen 266 TQLPDGKLYI 275 (275)
T ss_dssp EEEETTEEEE
T ss_pred EEeCCCcCCC
Confidence 444 679886
No 176
>KOG0316|consensus
Probab=83.69 E-value=41 Score=32.60 Aligned_cols=107 Identities=21% Similarity=0.325 Sum_probs=72.2
Q ss_pred ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC--CEEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 601 FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN--NKIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 601 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
.++.=+.-||.+ ..+..+|..|++-..- +..-.....++.++ ..+++-|+++ .++.++|-.++..+
T Consensus 69 ~Dnskf~s~GgD-----k~v~vwDV~TGkv~Rr--~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~s~e 136 (307)
T KOG0316|consen 69 SDNSKFASCGGD-----KAVQVWDVNTGKVDRR--FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSRSFE 136 (307)
T ss_pred ccccccccCCCC-----ceEEEEEcccCeeeee--cccccceeeEEEecCcceEEEecccc-----ceeEEEEcccCCCC
Confidence 344444444432 4688999988764321 11111112234444 3577778765 57889999999999
Q ss_pred EccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCce
Q psy10286 679 MIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSW 724 (748)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W 724 (748)
.+..+...+.+...+.+.++.+|.|-.++ ++-.||+..++-
T Consensus 137 PiQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G~l 177 (307)
T KOG0316|consen 137 PIQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKGTL 177 (307)
T ss_pred ccchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEeeccee
Confidence 99888889999999999999988887654 477888776654
No 177
>KOG0289|consensus
Probab=83.47 E-value=45 Score=35.26 Aligned_cols=143 Identities=15% Similarity=0.139 Sum_probs=76.8
Q ss_pred CcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEE
Q psy10286 545 KRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 545 ~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~ 622 (748)
....++++.+ ||.|+..|-.+ ..+-+||.++.. .++.+|..-.--.+..+ ++--|+.-+.++ ..|.+
T Consensus 347 ~v~~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add----~~V~l 415 (506)
T KOG0289|consen 347 DVEYTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD----GSVKL 415 (506)
T ss_pred cceeEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC----CeEEE
Confidence 3445666666 77887776543 356788888776 55556552222222333 333344444332 13888
Q ss_pred EECCCCcEEEccCCCCCCc-ceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEEC--C
Q psy10286 623 YDPKTDEWTSVKPMLTKRC-RLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM--G 697 (748)
Q Consensus 623 yd~~~~~W~~~~~~p~~r~-~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~ 697 (748)
+|..... ..+..+.+-. ......+ .|..+++||. .-.||.|+-++..|+.+..++..-.-...+.++ .
T Consensus 416 wDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~-----~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~a 488 (506)
T KOG0289|consen 416 WDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS-----DLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHA 488 (506)
T ss_pred EEehhhc--ccceeeccccccceeEEEcCCCCeEEeecc-----eeEEEEEecccccceeeehhhhcccccceeeecccc
Confidence 8887654 2222222211 2233334 3566777763 246788888899999987665443333344443 3
Q ss_pred EEEEEeCC
Q psy10286 698 KLWAIGGY 705 (748)
Q Consensus 698 ~l~v~GG~ 705 (748)
+++..||.
T Consensus 489 q~l~s~sm 496 (506)
T KOG0289|consen 489 QYLASTSM 496 (506)
T ss_pred eEEeeccc
Confidence 33344443
No 178
>PRK01742 tolB translocation protein TolB; Provisional
Probab=83.19 E-value=76 Score=34.71 Aligned_cols=181 Identities=11% Similarity=0.039 Sum_probs=89.0
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeC-CCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGG-YDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG-~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..++.+|..+++-+.+...+.. .......-+|+..+++. .++. .++|.+|..++....+..-... .......-+
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSPDG~~La~~~~~~g~---~~Iy~~d~~~~~~~~lt~~~~~-~~~~~wSpD 302 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGH-NGAPAFSPDGSRLAFASSKDGV---LNIYVMGANGGTPSQLTSGAGN-NTEPSWSPD 302 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCc-cCceeECCCCCEEEEEEecCCc---EEEEEEECCCCCeEeeccCCCC-cCCEEECCC
Confidence 4689999988766665544321 11122223565444433 3322 4688899888776665432211 111111224
Q ss_pred C-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC-EEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 603 S-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN-KIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 603 ~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
| .|++....++ ...+|.+|..+..-..+.. ... .....-++ .|++.++ +.++.+|..+..+..+
T Consensus 303 G~~i~f~s~~~g---~~~I~~~~~~~~~~~~l~~---~~~-~~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~l 368 (429)
T PRK01742 303 GQSILFTSDRSG---SPQVYRMSASGGGASLVGG---RGY-SAQISADGKTLVMING-------DNVVKQDLTSGSTEVL 368 (429)
T ss_pred CCEEEEEECCCC---CceEEEEECCCCCeEEecC---CCC-CccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEe
Confidence 4 4555443322 2478888876654443321 111 11122244 4544443 4578899999888876
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
.... ........-+++.+++++.++. ..-+++.+...+.=+.+
T Consensus 369 t~~~--~~~~~~~sPdG~~i~~~s~~g~--~~~l~~~~~~G~~~~~l 411 (429)
T PRK01742 369 SSTF--LDESPSISPNGIMIIYSSTQGL--GKVLQLVSADGRFKARL 411 (429)
T ss_pred cCCC--CCCCceECCCCCEEEEEEcCCC--ceEEEEEECCCCceEEc
Confidence 4221 1111122336777777664332 12334445544433333
No 179
>KOG0316|consensus
Probab=81.75 E-value=53 Score=31.89 Aligned_cols=184 Identities=14% Similarity=0.158 Sum_probs=102.7
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeE----EEEEC--CEEEEEeCCCCCCCCceEEEEeCCCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVG----AAALN--DKLYVCGGYDGVSSLNTVECYEPDKD 581 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~----~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~~~ 581 (748)
+|.-+..||- .+.+..+|..|++-.+. ..+|. ++.+| ..+.+.|+++ .++.+||-.++
T Consensus 70 Dnskf~s~Gg-----Dk~v~vwDV~TGkv~Rr------~rgH~aqVNtV~fNeesSVv~SgsfD-----~s~r~wDCRS~ 133 (307)
T KOG0316|consen 70 DNSKFASCGG-----DKAVQVWDVNTGKVDRR------FRGHLAQVNTVRFNEESSVVASGSFD-----SSVRLWDCRSR 133 (307)
T ss_pred cccccccCCC-----CceEEEEEcccCeeeee------cccccceeeEEEecCcceEEEecccc-----ceeEEEEcccC
Confidence 5555555553 35788999998863221 11222 22333 3566667765 57888998888
Q ss_pred eEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCC
Q psy10286 582 QWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGA 661 (748)
Q Consensus 582 ~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~ 661 (748)
..+.+.-+...+.+-..+.+.+...+.|..+| .+-.||+..++-..- -+..|-. .....-++...++|-.+
T Consensus 134 s~ePiQildea~D~V~Si~v~~heIvaGS~DG-----tvRtydiR~G~l~sD-y~g~pit-~vs~s~d~nc~La~~l~-- 204 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVAEHEIVAGSVDG-----TVRTYDIRKGTLSSD-YFGHPIT-SVSFSKDGNCSLASSLD-- 204 (307)
T ss_pred CCCccchhhhhcCceeEEEecccEEEeeccCC-----cEEEEEeecceeehh-hcCCcce-eEEecCCCCEEEEeecc--
Confidence 88887777778888888888888777776655 477888876653221 1111111 11111244455555433
Q ss_pred ccccEEEEEeCCCCcEEEc-cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 662 IFLQSVEMYDPITDEWKMI-ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 662 ~~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
..+...|-++.+--.. ......-+...++..+..-.|++|..+. -|+.||+...+
T Consensus 205 ---stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG----~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 205 ---STLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDG----KVYFWDLVDET 260 (307)
T ss_pred ---ceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCc----eEEEEEeccce
Confidence 2455566555432111 1111112233455566666777775432 47777776543
No 180
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=81.42 E-value=74 Score=33.72 Aligned_cols=132 Identities=9% Similarity=0.123 Sum_probs=74.2
Q ss_pred CCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccC-----CCCC--CcceeEEEECCEE
Q psy10286 580 KDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP-----MLTK--RCRLGVAALNNKI 652 (748)
Q Consensus 580 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~-----~p~~--r~~~~~~~~~~~i 652 (748)
.+.|+.+.. ..-..--++.++|++|++.- ...++.++..- +-+++.+ +... +.....+...|++
T Consensus 189 ~~~Wt~l~~--~~~~~~DIi~~kGkfYAvD~------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs~GdL 259 (373)
T PLN03215 189 GNVLKALKQ--MGYHFSDIIVHKGQTYALDS------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVECCGEL 259 (373)
T ss_pred CCeeeEccC--CCceeeEEEEECCEEEEEcC------CCeEEEEecCC-ceeeecceecccccCCcccCceeEEEECCEE
Confidence 489999964 22335567889999999843 23566666431 1122221 1111 1223455667889
Q ss_pred EEEeccCCCc--------------cccEEEEEeCCCCcEEEccCCCCC------CcceEEE------EECCEEEEEeCCC
Q psy10286 653 YVCGGYDGAI--------------FLQSVEMYDPITDEWKMIASMNVM------RSRVALV------ANMGKLWAIGGYD 706 (748)
Q Consensus 653 ~v~GG~~~~~--------------~~~~v~~yd~~~~~W~~~~~~p~~------r~~~~~~------~~~~~l~v~GG~~ 706 (748)
+++..+.... ..-.|+..|.+..+|.++..+... ....++. ..++.||+...
T Consensus 260 LmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd-- 337 (373)
T PLN03215 260 YIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTED-- 337 (373)
T ss_pred EEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECC--
Confidence 9998753211 112456668888999999876422 1111111 12466777732
Q ss_pred CCCCCCeEEEEeCCCCceEec
Q psy10286 707 GVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 707 ~~~~~~~v~~yd~~~~~W~~~ 727 (748)
....+||.+.++-..+
T Consensus 338 -----~~~~v~~~~dg~~~~~ 353 (373)
T PLN03215 338 -----TMPKVFKLDNGNGSSI 353 (373)
T ss_pred -----CcceEEECCCCCccce
Confidence 2356888888774443
No 181
>PRK10115 protease 2; Provisional
Probab=81.22 E-value=1.2e+02 Score=35.57 Aligned_cols=249 Identities=10% Similarity=0.002 Sum_probs=121.5
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCce--eecccccccceEEeccc-ccccC---C-CccceEEEEeCCCCce--EE
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRW--QMAEEETLSNAVISTKS-CLTKA---G-DSLSTVEVFDPLVGRW--QM 491 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W--~~~~~~~~~~~~~~~~~-~~~~~---g-~~~~~~~~yd~~~~~W--~~ 491 (748)
+++.++++ .+..++...++++.|..++.. ..+.......+....+. ..+.. + ....++|+++..++.- ..
T Consensus 137 dg~~la~~-~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt~~~~d~l 215 (686)
T PRK10115 137 DNTIMALA-EDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGTPASQDEL 215 (686)
T ss_pred CCCEEEEE-ecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCCChhHCeE
Confidence 34455554 344455566788888877752 22222111111111111 12211 1 1236788888887732 22
Q ss_pred ccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEEC--CCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCC
Q psy10286 492 AEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDP--VRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVS 568 (748)
Q Consensus 492 ~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~--~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~ 568 (748)
+-.-+........... +++..++.... ...+.++.|+. .+..|..+-+.+.... ......++.+|+.--.+.
T Consensus 216 v~~e~~~~~~~~~~~s~d~~~l~i~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ly~~tn~~~-- 290 (686)
T PRK10115 216 VYEEKDDTFYVSLHKTTSKHYVVIHLAS--ATTSEVLLLDAELADAEPFVFLPRRKDHE-YSLDHYQHRFYLRSNRHG-- 290 (686)
T ss_pred EEeeCCCCEEEEEEEcCCCCEEEEEEEC--CccccEEEEECcCCCCCceEEEECCCCCE-EEEEeCCCEEEEEEcCCC--
Confidence 2211112222233333 44433344332 23356888883 3344433333222222 233344788888754432
Q ss_pred CCceEEEEeCC-CCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEE
Q psy10286 569 SLNTVECYEPD-KDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAA 647 (748)
Q Consensus 569 ~~~~~~~yd~~-~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~ 647 (748)
....+...+.. .+.|+.+-+....+.--.+...++.+++..-.++ ...++.+|..+.....+. ++.+... +...
T Consensus 291 ~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~l~~~~~~~g---~~~l~~~~~~~~~~~~l~-~~~~~~~-~~~~ 365 (686)
T PRK10115 291 KNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFTDWLVVEERQRG---LTSLRQINRKTREVIGIA-FDDPAYV-TWIA 365 (686)
T ss_pred CCceEEEecCCCcccCeEEECCCCCCEEEEEEEECCEEEEEEEeCC---EEEEEEEcCCCCceEEec-CCCCceE-eeec
Confidence 22346666766 5789887654333333344555788777765443 346888887666655543 1222221 1111
Q ss_pred E----C-CEEEEEeccCCCccccEEEEEeCCCCcEEEccC
Q psy10286 648 L----N-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS 682 (748)
Q Consensus 648 ~----~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (748)
. + +.+++.- .+...-.+++.||+.+.+|+.+..
T Consensus 366 ~~~~~~~~~~~~~~--ss~~~P~~~y~~d~~~~~~~~l~~ 403 (686)
T PRK10115 366 YNPEPETSRLRYGY--SSMTTPDTLFELDMDTGERRVLKQ 403 (686)
T ss_pred ccCCCCCceEEEEE--ecCCCCCEEEEEECCCCcEEEEEe
Confidence 1 1 3333321 122234689999999999887743
No 182
>KOG1332|consensus
Probab=81.13 E-value=57 Score=31.88 Aligned_cols=103 Identities=17% Similarity=0.309 Sum_probs=60.3
Q ss_pred EEEEEccCCCCcccCeEEEEECCCCcEEEcc----------------CCCCCCcceeEEEECCEEEEEeccCCCccccEE
Q psy10286 604 YVYALGGHDGLSIFDSVERYDPKTDEWTSVK----------------PMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSV 667 (748)
Q Consensus 604 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~----------------~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v 667 (748)
+-++-||.++ +-.+|.||- ++|..-. ....+++..+.+.-+++++|.-
T Consensus 176 krlvSgGcDn---~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt----------- 239 (299)
T KOG1332|consen 176 KRLVSGGCDN---LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT----------- 239 (299)
T ss_pred ceeeccCCcc---ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE-----------
Confidence 4578888865 335666664 3675432 2234555555555566665543
Q ss_pred EEEeCCCCcEEE--ccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCC-CceEecCCC
Q psy10286 668 EMYDPITDEWKM--IASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPST-DSWAFVAPM 730 (748)
Q Consensus 668 ~~yd~~~~~W~~--~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~-~~W~~~~~~ 730 (748)
-+.+...|+. +.+.|.+....+-...++-|-|-||. +.|.++-... ++|..++..
T Consensus 240 --~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~~~Gkw~~v~~~ 297 (299)
T KOG1332|consen 240 --KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD------NKVTLWKENVDGKWEEVGEV 297 (299)
T ss_pred --ecCccCcccccccccCCcceEEEEEeccccEEEEecCC------cEEEEEEeCCCCcEEEcccc
Confidence 2334567765 35566665555555556666666663 3567776555 599988653
No 183
>KOG1036|consensus
Probab=81.01 E-value=66 Score=32.50 Aligned_cols=154 Identities=14% Similarity=0.156 Sum_probs=78.7
Q ss_pred eEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-ECC
Q psy10286 525 TVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-FDS 603 (748)
Q Consensus 525 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~ 603 (748)
++..||..++.- ...+...-.-..++..+..=.+.||.+ ..+-.||..+..=..+..-..+-. ++.. ...
T Consensus 36 slrlYdv~~~~l--~~~~~~~~plL~c~F~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth~~~i~--ci~~~~~~ 106 (323)
T KOG1036|consen 36 SLRLYDVPANSL--KLKFKHGAPLLDCAFADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTHDEGIR--CIEYSYEV 106 (323)
T ss_pred cEEEEeccchhh--hhheecCCceeeeeccCCceEEEeccC-----ceEEEEEecCCcceeeccCCCceE--EEEeeccC
Confidence 456677666521 111111111234444455444567765 367889998887665543222211 1111 234
Q ss_pred EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEE-----
Q psy10286 604 YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWK----- 678 (748)
Q Consensus 604 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~----- 678 (748)
...|.||+++ .+..+|+.... .+.....+..-+++.+ .+.++|+|+.+ ..+..||..+..--
T Consensus 107 ~~vIsgsWD~-----~ik~wD~R~~~--~~~~~d~~kkVy~~~v-~g~~LvVg~~~-----r~v~iyDLRn~~~~~q~re 173 (323)
T KOG1036|consen 107 GCVISGSWDK-----TIKFWDPRNKV--VVGTFDQGKKVYCMDV-SGNRLVVGTSD-----RKVLIYDLRNLDEPFQRRE 173 (323)
T ss_pred CeEEEcccCc-----cEEEEeccccc--cccccccCceEEEEec-cCCEEEEeecC-----ceEEEEEcccccchhhhcc
Confidence 5567788854 58888887621 1112222223334433 44556666543 47888887654311
Q ss_pred --------EccCCCCCCcceEEEEECCEEEE
Q psy10286 679 --------MIASMNVMRSRVALVANMGKLWA 701 (748)
Q Consensus 679 --------~~~~~p~~r~~~~~~~~~~~l~v 701 (748)
.+.-.| .+.++.+..++|+++|
T Consensus 174 S~lkyqtR~v~~~p-n~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 174 SSLKYQTRCVALVP-NGEGYVVSSIEGRVAV 203 (323)
T ss_pred ccceeEEEEEEEec-CCCceEEEeecceEEE
Confidence 112233 4556666666777665
No 184
>KOG0646|consensus
Probab=80.65 E-value=41 Score=35.84 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=18.5
Q ss_pred EEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 693 VANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 693 ~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
+..++.+++.|+.++. |.++|+.+.+
T Consensus 285 is~DgtlLlSGd~dg~-----VcvWdi~S~Q 310 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDGK-----VCVWDIYSKQ 310 (476)
T ss_pred EecCccEEEeeCCCCC-----EEEEecchHH
Confidence 3348999999997653 6677776654
No 185
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=78.99 E-value=4.1 Score=34.79 Aligned_cols=55 Identities=5% Similarity=0.227 Sum_probs=40.2
Q ss_pred cCCCHHHHHHHHHhhhceeEE-------------------------eechhHHHHHHHHHHhcchhHHHHHHHHhhhccc
Q psy10286 153 QGIDAVAMEALINFVYSGRVT-------------------------IHSQNVQSLMVVASFLQMQKVADACADFLKKRFH 207 (748)
Q Consensus 153 ~~~~~~~~~~~l~flYtg~~~-------------------------i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~~l~ 207 (748)
+.|...+|+.+++|+=..+-. .+.+.+.++.-+|++|.++.|.+.|+..+...+.
T Consensus 44 pnVrSsvl~kv~ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikpLLd~gCKivaemir 123 (158)
T COG5201 44 PNVRSSVLMKVQEWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKPLLDLGCKIVAEMIR 123 (158)
T ss_pred cchhHHHHHHHHHHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchHHHHHHHHHHHHHHc
Confidence 567777777777776432211 3455678889999999999999999988776433
No 186
>KOG1036|consensus
Probab=78.54 E-value=79 Score=31.96 Aligned_cols=131 Identities=12% Similarity=0.191 Sum_probs=66.0
Q ss_pred eEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCE
Q psy10286 478 TVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDK 557 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~ 557 (748)
.+..||...++-.. .+.....--.++..+..=.+.||.+ ..+.+||..+..=..+..-..+...-.-. ....
T Consensus 36 slrlYdv~~~~l~~--~~~~~~plL~c~F~d~~~~~~G~~d-----g~vr~~Dln~~~~~~igth~~~i~ci~~~-~~~~ 107 (323)
T KOG1036|consen 36 SLRLYDVPANSLKL--KFKHGAPLLDCAFADESTIVTGGLD-----GQVRRYDLNTGNEDQIGTHDEGIRCIEYS-YEVG 107 (323)
T ss_pred cEEEEeccchhhhh--heecCCceeeeeccCCceEEEeccC-----ceEEEEEecCCcceeeccCCCceEEEEee-ccCC
Confidence 46677777662211 1111111123344455445567755 36889999988766554322222111111 1233
Q ss_pred EEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCc
Q psy10286 558 LYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDE 629 (748)
Q Consensus 558 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~ 629 (748)
..|.||++ ..+..+|+....= ......+..-+++.+.++ +.++|+.+ ..+..||..+..
T Consensus 108 ~vIsgsWD-----~~ik~wD~R~~~~--~~~~d~~kkVy~~~v~g~-~LvVg~~~-----r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 108 CVISGSWD-----KTIKFWDPRNKVV--VGTFDQGKKVYCMDVSGN-RLVVGTSD-----RKVLIYDLRNLD 166 (323)
T ss_pred eEEEcccC-----ccEEEEecccccc--ccccccCceEEEEeccCC-EEEEeecC-----ceEEEEEccccc
Confidence 45678876 5678888876221 111222223334444444 45555542 468889887653
No 187
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=78.54 E-value=45 Score=31.84 Aligned_cols=161 Identities=15% Similarity=0.154 Sum_probs=94.8
Q ss_pred eEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCC
Q psy10286 502 VGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPD 579 (748)
Q Consensus 502 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~ 579 (748)
.+....+|++|..-|.-+. +.+.++|..+.+ |++-=+ |..-.+-+.+.+++.+|..-=.++ -.+.||+.
T Consensus 49 QGL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~eg-----vaf~~d~~ 119 (262)
T COG3823 49 QGLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEG-----VAFKYDAD 119 (262)
T ss_pred cceeeeCCEEEEecccccc---ceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccc-----eeEEEChH
Confidence 3456678899888776543 578899998765 443222 244567788889999998854332 34667654
Q ss_pred CCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEE---Ecc--CCCCCCcceeEEEECCEEEE
Q psy10286 580 KDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWT---SVK--PMLTKRCRLGVAALNNKIYV 654 (748)
Q Consensus 580 ~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~--~~p~~r~~~~~~~~~~~i~v 654 (748)
+.+.+...+.+-.+.+.+.-+..+.+--|. ..+..-||++-.=. .+. ..|. +...-.-.++|.+|.
T Consensus 120 --t~~~lg~~~y~GeGWgLt~d~~~LimsdGs------atL~frdP~tfa~~~~v~VT~~g~pv-~~LNELE~VdG~lyA 190 (262)
T COG3823 120 --TLEELGRFSYEGEGWGLTSDDKNLIMSDGS------ATLQFRDPKTFAELDTVQVTDDGVPV-SKLNELEWVDGELYA 190 (262)
T ss_pred --HhhhhcccccCCcceeeecCCcceEeeCCc------eEEEecCHHHhhhcceEEEEECCeec-ccccceeeeccEEEE
Confidence 444556666667777888877777776664 34556666543211 010 1110 000111223344432
Q ss_pred EeccCCCccccEEEEEeCCCCc---EEEccCCCC
Q psy10286 655 CGGYDGAIFLQSVEMYDPITDE---WKMIASMNV 685 (748)
Q Consensus 655 ~GG~~~~~~~~~v~~yd~~~~~---W~~~~~~p~ 685 (748)
- --..+.|.+.||.+.+ |..++.++.
T Consensus 191 N-----Vw~t~~I~rI~p~sGrV~~widlS~L~~ 219 (262)
T COG3823 191 N-----VWQTTRIARIDPDSGRVVAWIDLSGLLK 219 (262)
T ss_pred e-----eeeecceEEEcCCCCcEEEEEEccCCch
Confidence 1 1234678889998875 888877653
No 188
>KOG1332|consensus
Probab=78.20 E-value=71 Score=31.25 Aligned_cols=102 Identities=14% Similarity=0.323 Sum_probs=58.8
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCeEEEc----------------cCCCCCcceeEEEEECCEEEEEeCCCCCCCCceE
Q psy10286 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKV----------------SPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTV 573 (748)
Q Consensus 510 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~----------------~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 573 (748)
+=++.||.+. +-.+|.||- ++|..- |....+++..+.+..+|+++++-
T Consensus 176 krlvSgGcDn---~VkiW~~~~--~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt----------- 239 (299)
T KOG1332|consen 176 KRLVSGGCDN---LVKIWKFDS--DSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWT----------- 239 (299)
T ss_pred ceeeccCCcc---ceeeeecCC--cchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEE-----------
Confidence 4467788652 234566654 366432 23445677777777777776652
Q ss_pred EEEeCCCCeEEEc--cCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC-cEEEccC
Q psy10286 574 ECYEPDKDQWRIV--KSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD-EWTSVKP 635 (748)
Q Consensus 574 ~~yd~~~~~W~~~--~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~ 635 (748)
-+.+.+.|+.- .+.|.+.+..+-...++.+-|-||. +.+.++-...+ +|.+++.
T Consensus 240 --~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~Gd------Nkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 240 --KDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGD------NKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred --ecCccCcccccccccCCcceEEEEEeccccEEEEecCC------cEEEEEEeCCCCcEEEccc
Confidence 23345667543 4555555544444445555555553 56777766655 8998753
No 189
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=77.41 E-value=1.1e+02 Score=33.00 Aligned_cols=197 Identities=10% Similarity=0.078 Sum_probs=97.2
Q ss_pred eCCCCceEEccCCC-cccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC----CCc----------
Q psy10286 483 DPLVGRWQMAEAMS-MLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC----FKR---------- 546 (748)
Q Consensus 483 d~~~~~W~~~~~~~-~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~----~~r---------- 546 (748)
+-.-.+|++++..+ .+-.......+ ++..+++|.. ..+++-+-.-.+|+.+...+ ..+
T Consensus 162 ~DgG~tW~~~~~~~~~p~~~~~i~~~~~~~~~ivg~~------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~~~g~~ 235 (398)
T PLN00033 162 SDGGETWERIPLSPKLPGEPVLIKATGPKSAEMVTDE------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSGISGAS 235 (398)
T ss_pred cCCCCCceECccccCCCCCceEEEEECCCceEEEecc------ceEEEECCCCCCceEcccccccccccccccccccccc
Confidence 33446898876432 12222333344 4567777742 23555555567898762111 110
Q ss_pred ----ceeEEEE-ECCEEEEEeCCCCCCCCceEEE-EeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeE
Q psy10286 547 ----SAVGAAA-LNDKLYVCGGYDGVSSLNTVEC-YEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSV 620 (748)
Q Consensus 547 ----~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~-yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 620 (748)
..+++.. -++.++++|-.. .+++ .|.....|+.+......+........++.++++|.. ..+
T Consensus 236 ~y~Gsf~~v~~~~dG~~~~vg~~G------~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~------G~l 303 (398)
T PLN00033 236 YYTGTFSTVNRSPDGDYVAVSSRG------NFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRG------GGL 303 (398)
T ss_pred eeccceeeEEEcCCCCEEEEECCc------cEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCC------ceE
Confidence 1112222 245566665321 2333 344444588886443333322333457888888754 234
Q ss_pred EEEECCCC-----cEEEccCCCCCCcc-eeEEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEccC-CCCCCcceEE
Q psy10286 621 ERYDPKTD-----EWTSVKPMLTKRCR-LGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS-MNVMRSRVAL 692 (748)
Q Consensus 621 ~~yd~~~~-----~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~ 692 (748)
..-+.... +|..++. +..+.. .++... ++.++++|... -++.-...-++|+.... -+.+-.-+.+
T Consensus 304 ~~S~d~G~~~~~~~f~~~~~-~~~~~~l~~v~~~~d~~~~a~G~~G------~v~~s~D~G~tW~~~~~~~~~~~~ly~v 376 (398)
T PLN00033 304 YVSKGTGLTEEDFDFEEADI-KSRGFGILDVGYRSKKEAWAAGGSG------ILLRSTDGGKSWKRDKGADNIAANLYSV 376 (398)
T ss_pred EEecCCCCcccccceeeccc-CCCCcceEEEEEcCCCcEEEEECCC------cEEEeCCCCcceeEccccCCCCcceeEE
Confidence 43333334 3444432 222332 333333 56788888632 34555556778999753 1112222344
Q ss_pred EEE-CCEEEEEeC
Q psy10286 693 VAN-MGKLWAIGG 704 (748)
Q Consensus 693 ~~~-~~~l~v~GG 704 (748)
... +++.|++|-
T Consensus 377 ~f~~~~~g~~~G~ 389 (398)
T PLN00033 377 KFFDDKKGFVLGN 389 (398)
T ss_pred EEcCCCceEEEeC
Confidence 433 588999874
No 190
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=77.23 E-value=97 Score=33.09 Aligned_cols=233 Identities=15% Similarity=0.132 Sum_probs=113.6
Q ss_pred cceEEEEeCCCCce-EEccCCCcccceeEEEEE---CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEE
Q psy10286 476 LSTVEVFDPLVGRW-QMAEAMSMLRSRVGVAVM---KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGA 551 (748)
Q Consensus 476 ~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~ 551 (748)
...+...|..+++- .+++... .-|+.... +.++|+.+. + ..+-++|+.+.+ .+...+.+....+.
T Consensus 15 ~~~v~viD~~t~~~~~~i~~~~---~~h~~~~~s~Dgr~~yv~~r-d-----g~vsviD~~~~~--~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 15 SGSVAVIDGATNKVVARIPTGG---APHAGLKFSPDGRYLYVANR-D-----GTVSVIDLATGK--VVATIKVGGNPRGI 83 (369)
T ss_dssp GTEEEEEETTT-SEEEEEE-ST---TEEEEEE-TT-SSEEEEEET-T-----SEEEEEETTSSS--EEEEEE-SSEEEEE
T ss_pred CCEEEEEECCCCeEEEEEcCCC---CceeEEEecCCCCEEEEEcC-C-----CeEEEEECCccc--EEEEEecCCCcceE
Confidence 35788899888763 3333221 22443333 457999853 2 368899999987 44555556655565
Q ss_pred EEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEE-Ecc--CC----CCCCcceEEEEECCEEEEEccCCCCcccCeEEEE
Q psy10286 552 AAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWR-IVK--SM----QKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERY 623 (748)
Q Consensus 552 ~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-~~~--~~----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~y 623 (748)
+.. +|+..+.+.+. -+.+..+|..+.+=- .++ .+ +.+|...-.+...+.-|++.-.+ ...++..
T Consensus 84 ~~s~DG~~~~v~n~~----~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I~vV 155 (369)
T PF02239_consen 84 AVSPDGKYVYVANYE----PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKD----TGEIWVV 155 (369)
T ss_dssp EE--TTTEEEEEEEE----TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETT----TTEEEEE
T ss_pred EEcCCCCEEEEEecC----CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEcc----CCeEEEE
Confidence 554 55544444322 357888998775422 221 12 22333222233455556665443 3478888
Q ss_pred ECCCCcEEEccCCCCCCcceeEEEEC-CEEEEEeccCCCccccEEEEEeCCCCcEEEc---cCCCCCCcceEEEEEC-CE
Q psy10286 624 DPKTDEWTSVKPMLTKRCRLGVAALN-NKIYVCGGYDGAIFLQSVEMYDPITDEWKMI---ASMNVMRSRVALVANM-GK 698 (748)
Q Consensus 624 d~~~~~W~~~~~~p~~r~~~~~~~~~-~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~r~~~~~~~~~-~~ 698 (748)
|.....=.........+..|....-. ++-|+++ .++ .+.+-..|.++++-..+ +..|.+..+..+.-.+ |.
T Consensus 156 dy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va-~~~---sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~ 231 (369)
T PF02239_consen 156 DYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVA-ANG---SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGP 231 (369)
T ss_dssp ETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEE-EGG---GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEE
T ss_pred EeccccccceeeecccccccccccCcccceeeec-ccc---cceeEEEeeccceEEEEeeccccccccccccccCCCcce
Confidence 86654222223344566667665553 3433333 322 35888999888754332 3333333333333222 45
Q ss_pred EEEEeCCCCCCCCCeEEEEeCC----CCceEecCCCCCC
Q psy10286 699 LWAIGGYDGVSNLPTVEVYDPS----TDSWAFVAPMCAH 733 (748)
Q Consensus 699 l~v~GG~~~~~~~~~v~~yd~~----~~~W~~~~~~~~~ 733 (748)
++..+|..... -...--|+. ...|+.+..++..
T Consensus 232 vw~~~~~~~~~--~~~ig~~~v~v~d~~~wkvv~~I~~~ 268 (369)
T PF02239_consen 232 VWATSGLGYFA--IPLIGTDPVSVHDDYAWKVVKTIPTQ 268 (369)
T ss_dssp EEEEEBSSSSE--EEEEE--TTT-STTTBTSEEEEEE-S
T ss_pred EEeecccccee--cccccCCccccchhhcCeEEEEEECC
Confidence 55555532110 011222332 3667777666554
No 191
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=74.98 E-value=1.2e+02 Score=32.33 Aligned_cols=290 Identities=15% Similarity=0.049 Sum_probs=133.8
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceee-ccc--ccccceEEecccccccCCCccceEEEEeCCCCceEE-cc--C
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQM-AEE--ETLSNAVISTKSCLTKAGDSLSTVEVFDPLVGRWQM-AE--A 494 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~-~~~--~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~~~W~~-~~--~ 494 (748)
+..+|+.+. + ..+..+|..+++-.. +.. ...+-++...+..++.+....+.+..+|..+.+=.+ ++ .
T Consensus 48 gr~~yv~~r---d----g~vsviD~~~~~~v~~i~~G~~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~ 120 (369)
T PF02239_consen 48 GRYLYVANR---D----GTVSVIDLATGKVVATIKVGGNPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGG 120 (369)
T ss_dssp SSEEEEEET---T----SEEEEEETTSSSEEEEEE-SSEEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--E
T ss_pred CCEEEEEcC---C----CeEEEEECCcccEEEEEecCCCcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccccc
Confidence 346888753 1 258889988877432 111 112222222344444444445688899988865322 22 1
Q ss_pred C----CcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCC
Q psy10286 495 M----SMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSS 569 (748)
Q Consensus 495 ~----~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~ 569 (748)
+ +.+|...-.+...+.-|++--.+ ...+|..|....+=.....+..++.-|....- +++-|+.+- . .
T Consensus 121 ~~~~~~~~Rv~aIv~s~~~~~fVv~lkd----~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~va~-~---~ 192 (369)
T PF02239_consen 121 MPVDGPESRVAAIVASPGRPEFVVNLKD----TGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFLVAA-N---G 192 (369)
T ss_dssp E-TTTS---EEEEEE-SSSSEEEEEETT----TTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEEEEE-G---G
T ss_pred ccccccCCCceeEEecCCCCEEEEEEcc----CCeEEEEEeccccccceeeecccccccccccCcccceeeecc-c---c
Confidence 2 22343222223355556654332 35788888665421222334456666766655 444433332 2 1
Q ss_pred CceEEEEeCCCCeEEEcc---CCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECC----CCcEEEccCCCCCCc
Q psy10286 570 LNTVECYEPDKDQWRIVK---SMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPK----TDEWTSVKPMLTKRC 641 (748)
Q Consensus 570 ~~~~~~yd~~~~~W~~~~---~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~----~~~W~~~~~~p~~r~ 641 (748)
.+.+-..|..+++-...- .-|.+.....+... .|-++..+|..... -...--|+. ...|+.+..++....
T Consensus 193 sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~--~~~ig~~~v~v~d~~~wkvv~~I~~~G~ 270 (369)
T PF02239_consen 193 SNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFA--IPLIGTDPVSVHDDYAWKVVKTIPTQGG 270 (369)
T ss_dssp GTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSE--EEEEE--TTT-STTTBTSEEEEEE-SSS
T ss_pred cceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecccccee--cccccCCccccchhhcCeEEEEEECCCC
Confidence 257888898887643321 22222222222222 23555555542211 122333443 367888887776666
Q ss_pred ceeEEEEC--CEEEEEeccCCCccccEEEEEeCCCCcEE-EccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEE
Q psy10286 642 RLGVAALN--NKIYVCGGYDGAIFLQSVEMYDPITDEWK-MIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVY 717 (748)
Q Consensus 642 ~~~~~~~~--~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~y 717 (748)
++.+...- ..+|+-- .-+ ...+.+.++|.++.+=. .+...+..+..|.-..- |..+||--...+. .+.+|
T Consensus 271 glFi~thP~s~~vwvd~-~~~-~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~----~i~v~ 344 (369)
T PF02239_consen 271 GLFIKTHPDSRYVWVDT-FLN-PDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNG----AIVVY 344 (369)
T ss_dssp S--EE--TT-SEEEEE--TT--SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TT----EEEEE
T ss_pred cceeecCCCCccEEeec-cCC-CCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCC----EEEEE
Confidence 66666563 3455531 111 12678999999887321 22222222333333332 5677775432211 79999
Q ss_pred eCCCCceEecCCCCCC
Q psy10286 718 DPSTDSWAFVAPMCAH 733 (748)
Q Consensus 718 d~~~~~W~~~~~~~~~ 733 (748)
|.+|.+....-+++.|
T Consensus 345 D~~Tl~~~~~i~~~tP 360 (369)
T PF02239_consen 345 DAKTLKEKKRIPVPTP 360 (369)
T ss_dssp ETTTTEEEEEEE--SE
T ss_pred ECCCcEEEEEEEeeCC
Confidence 9988765433224443
No 192
>KOG0278|consensus
Probab=73.55 E-value=71 Score=31.34 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=67.4
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEE-ccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAF-GGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~-GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
...+..+|.++++-.+--.++.+-...-+. -+|+|..+ -| ..|-.+|+.+-.--+--.||......+. .-
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSlEvs-~dG~ilTia~g-------ssV~Fwdaksf~~lKs~k~P~nV~SASL-~P 234 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSLEVS-QDGRILTIAYG-------SSVKFWDAKSFGLLKSYKMPCNVESASL-HP 234 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcceeec-cCCCEEEEecC-------ceeEEeccccccceeeccCccccccccc-cC
Confidence 356788888888755443344443322222 24554443 23 2455566655332222345544332211 12
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEE-EEE--CCEEEEEccCCCCcccCeEEEEECC
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGV-IAF--DSYVYALGGHDGLSIFDSVERYDPK 626 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~-~~~--~~~iyv~GG~~~~~~~~~~~~yd~~ 626 (748)
+..+||.||.+ -.++.||-.|+. .+........+..- +.+ +|.+|..|..+|. -.+|.-.+.
T Consensus 235 ~k~~fVaGged-----~~~~kfDy~Tge--Ei~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGT---irlWQt~~~ 299 (334)
T KOG0278|consen 235 KKEFFVAGGED-----FKVYKFDYNTGE--EIGSYNKGHFGPVHCVRFSPDGELYASGSEDGT---IRLWQTTPG 299 (334)
T ss_pred CCceEEecCcc-----eEEEEEeccCCc--eeeecccCCCCceEEEEECCCCceeeccCCCce---EEEEEecCC
Confidence 56899999954 356777777665 22222122222211 222 8999999988764 234544443
No 193
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=73.54 E-value=98 Score=30.54 Aligned_cols=142 Identities=13% Similarity=0.170 Sum_probs=68.8
Q ss_pred ccCCCccceEEEEe---CCCCceEE--ccCCCc-------ccceeEEEEECCEEEEEccCCCCCCCCeEEE-EEC-----
Q psy10286 470 TKAGDSLSTVEVFD---PLVGRWQM--AEAMSM-------LRSRVGVAVMKNRLYAFGGYNGSERLSTVEE-FDP----- 531 (748)
Q Consensus 470 ~~~g~~~~~~~~yd---~~~~~W~~--~~~~~~-------~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~-yd~----- 531 (748)
+.++..+.....|| ...+.|+. ++..+. .-.-|+.+.+++.-|.+|=.+|......+-. |-+
T Consensus 95 ~~a~~km~~~~Lw~RpMF~~spW~~teL~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD~sPRe~G~~yfs~~~~s 174 (367)
T PF12217_consen 95 TVASNKMVRAELWSRPMFHDSPWRITELGTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGDVSPRELGFLYFSDAFAS 174 (367)
T ss_dssp ETTT--EEEEEEEEEE-STTS--EEEEEES-TT--------SEEEEEEE-SSS-EEEEEEE-SSSS-EEEEEEETTTTT-
T ss_pred hhhhhhhhhhhhhcccccccCCceeeecccccccccccceeeeeeeeeEecCCceeEEeccCCCCcceeeEEEecccccC
Confidence 33344444444444 35667854 444443 3456888999888889886655544343322 211
Q ss_pred -CCCeEEEccC-CCCCcceeEEEEECCEEEEEe-CCCCCCCCceEEEEeCCCCeEEEccCC-CCCCcceEEEEECCEEEE
Q psy10286 532 -VRRVWNKVSP-MCFKRSAVGAAALNDKLYVCG-GYDGVSSLNTVECYEPDKDQWRIVKSM-QKHRSAGGVIAFDSYVYA 607 (748)
Q Consensus 532 -~t~~W~~~~~-~~~~r~~~~~~~~~~~iyv~G-G~~~~~~~~~~~~yd~~~~~W~~~~~~-~~~r~~~~~~~~~~~iyv 607 (748)
..-.=+.++. ....-+..+.-.++|.+|+.- |..+...-+.+.+-+.....|+.+.-. ........-+..++.||+
T Consensus 175 p~~~vrr~i~sey~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp~nvHhtnlPFakvgD~l~m 254 (367)
T PF12217_consen 175 PGVFVRRIIPSEYERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFPNNVHHTNLPFAKVGDVLYM 254 (367)
T ss_dssp TT--EEEE--GGG-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-TT---SS---EEEETTEEEE
T ss_pred CcceeeeechhhhccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhccccccccccCCCceeeCCEEEE
Confidence 1111222322 223334455556799999874 444444556777888888899887422 223334455677999999
Q ss_pred EccC
Q psy10286 608 LGGH 611 (748)
Q Consensus 608 ~GG~ 611 (748)
||..
T Consensus 255 FgsE 258 (367)
T PF12217_consen 255 FGSE 258 (367)
T ss_dssp EEE-
T ss_pred Eecc
Confidence 9964
No 194
>KOG3545|consensus
Probab=73.43 E-value=98 Score=30.50 Aligned_cols=183 Identities=16% Similarity=0.201 Sum_probs=102.9
Q ss_pred eEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeC----CCCeEEEccCCCCCCcceEEEE
Q psy10286 525 TVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEP----DKDQWRIVKSMQKHRSAGGVIA 600 (748)
Q Consensus 525 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~----~~~~W~~~~~~~~~r~~~~~~~ 600 (748)
.+.......+.|.+-+ +|. ++++|+..+..+ ..+..|.. ..+.|...-.+|.+-.+.+-++
T Consensus 11 ~~~~~~~~~GsWmrDp-l~~----------~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VV 75 (249)
T KOG3545|consen 11 TVKTAGPRFGAWMRDP-LPA----------DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVV 75 (249)
T ss_pred EEEeeccccceeecCC-Ccc----------cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEE
Confidence 3445555667776532 222 678888855432 44555554 3345666667888888888999
Q ss_pred ECCEEEEEccCCCCcccCeEEEEECCCCc---EEEccCC------CCCCccee---EEEECCEEEEEeccCCCccccEEE
Q psy10286 601 FDSYVYALGGHDGLSIFDSVERYDPKTDE---WTSVKPM------LTKRCRLG---VAALNNKIYVCGGYDGAIFLQSVE 668 (748)
Q Consensus 601 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~------p~~r~~~~---~~~~~~~i~v~GG~~~~~~~~~v~ 668 (748)
++|.+|.-.+. ...+.+||..+.. |..++.+ |-...+++ .++-.+-+|++=-..++...-.+-
T Consensus 76 ynGs~yynk~~-----t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~s 150 (249)
T KOG3545|consen 76 YNGSLYYNKAG-----TRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLS 150 (249)
T ss_pred EcceEEeeccC-----CcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEee
Confidence 99999987654 4678999988743 4444321 11112222 233334455543222222122346
Q ss_pred EEeCCC----CcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeE-EEEeCCCCceEecCCCCCC
Q psy10286 669 MYDPIT----DEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTV-EVYDPSTDSWAFVAPMCAH 733 (748)
Q Consensus 669 ~yd~~~----~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v-~~yd~~~~~W~~~~~~~~~ 733 (748)
..|+.+ .+|..- . ..+....+..+-|.+|++-...... ..| +.||..+++=+. .++|-+
T Consensus 151 kLdp~tl~~e~tW~T~--~-~k~~~~~aF~iCGvLY~v~S~~~~~--~~i~yaydt~~~~~~~-~~ipf~ 214 (249)
T KOG3545|consen 151 KLDPETLEVERTWNTT--L-PKRSAGNAFMICGVLYVVHSYNCTH--TQISYAYDTTTGTQER-IDLPFP 214 (249)
T ss_pred ccCHHHhheeeeeccc--c-CCCCcCceEEEeeeeEEEeccccCC--ceEEEEEEcCCCceec-cccccc
Confidence 677744 345331 1 1234445566778999997655432 234 789998887643 344443
No 195
>KOG2321|consensus
Probab=72.81 E-value=28 Score=38.10 Aligned_cols=116 Identities=20% Similarity=0.259 Sum_probs=63.7
Q ss_pred CCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC--CEEEEEeccCCCccccE
Q psy10286 591 KHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN--NKIYVCGGYDGAIFLQS 666 (748)
Q Consensus 591 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~i~v~GG~~~~~~~~~ 666 (748)
.|+.+..+++. .--||+.|-. .++|+++.+.++|-. ++...-...-++.++ ..++.+||.+ ..
T Consensus 132 IP~~GRDm~y~~~scDly~~gsg------~evYRlNLEqGrfL~--P~~~~~~~lN~v~in~~hgLla~Gt~~-----g~ 198 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVGSG------SEVYRLNLEQGRFLN--PFETDSGELNVVSINEEHGLLACGTED-----GV 198 (703)
T ss_pred cCcCCccccccCCCccEEEeecC------cceEEEEcccccccc--ccccccccceeeeecCccceEEecccC-----ce
Confidence 44444445443 4467777643 589999999999843 332222333344443 4588888864 47
Q ss_pred EEEEeCCCCcEEE-------ccCCCCCCc--ceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 667 VEMYDPITDEWKM-------IASMNVMRS--RVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 667 v~~yd~~~~~W~~-------~~~~p~~r~--~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
|+.+|+.+..--. +...|..-. ..++... ++-|-+--|... ..|++||+.+.+
T Consensus 199 VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~----G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 199 VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTST----GSVLIYDLRASK 261 (703)
T ss_pred EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccC----CcEEEEEcccCC
Confidence 8899987754221 122222211 1233333 434554333222 258888887764
No 196
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=72.24 E-value=2.1e+02 Score=33.85 Aligned_cols=118 Identities=14% Similarity=0.203 Sum_probs=62.3
Q ss_pred eEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCCC-cce----EE------------------EEECC
Q psy10286 549 VGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHR-SAG----GV------------------IAFDS 603 (748)
Q Consensus 549 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r-~~~----~~------------------~~~~~ 603 (748)
.+-+++++.+|+... .+.++.+|..+.+ |+.-...+..- ..+ ++ +.+++
T Consensus 188 ~TPlvvgg~lYv~t~------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~ 261 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR 261 (764)
T ss_pred cCCEEECCEEEEECC------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCC
Confidence 345567999999754 2467888877654 77665433210 000 11 22344
Q ss_pred EEEEEccCCCCcccCeEEEEECCCCc--EEE-----------ccCCCCC--CcceeEEEECCEEEEEeccCCC-----cc
Q psy10286 604 YVYALGGHDGLSIFDSVERYDPKTDE--WTS-----------VKPMLTK--RCRLGVAALNNKIYVCGGYDGA-----IF 663 (748)
Q Consensus 604 ~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~-----------~~~~p~~--r~~~~~~~~~~~i~v~GG~~~~-----~~ 663 (748)
+||+- ..+ ..++.+|.++.+ |.. +...+.. +....-++.++.||+ |+.... ..
T Consensus 262 rV~~~-T~D-----g~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIv-G~~v~d~~~~~~~ 334 (764)
T TIGR03074 262 RIILP-TSD-----ARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVI-GGRVADNYSTDEP 334 (764)
T ss_pred EEEEe-cCC-----CeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEE-EecccccccccCC
Confidence 66653 222 246777776654 432 1111111 122334556777665 543221 23
Q ss_pred ccEEEEEeCCCCc--EEE
Q psy10286 664 LQSVEMYDPITDE--WKM 679 (748)
Q Consensus 664 ~~~v~~yd~~~~~--W~~ 679 (748)
...|..||.++.+ |+-
T Consensus 335 ~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 335 SGVIRAFDVNTGALVWAW 352 (764)
T ss_pred CcEEEEEECCCCcEeeEE
Confidence 4578999998875 764
No 197
>KOG2723|consensus
Probab=71.23 E-value=14 Score=35.62 Aligned_cols=49 Identities=12% Similarity=0.214 Sum_probs=40.1
Q ss_pred CCHHHHHHHHHhhhceeEEeec--hhHHHHHHHHHHhcchhHHHHHHHHhh
Q psy10286 155 IDAVAMEALINFVYSGRVTIHS--QNVQSLMVVASFLQMQKVADACADFLK 203 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~~~i~~--~~v~~ll~~A~~l~i~~l~~~c~~~l~ 203 (748)
=+-..|+.+|+|+-|..+.+++ .++..|...|++||++.+.+.+.+-..
T Consensus 57 RDG~lFRyvL~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~~~~~l~~~~~ 107 (221)
T KOG2723|consen 57 RDGFLFRYVLDYLRTKALLLPEDFAEVERLVREAEFFQLEAPVTYLLNSGQ 107 (221)
T ss_pred CCcchHHHHHHHhcccccccchhhhhHHHHHHHHHHHccccHHHHHhcccc
Confidence 3456799999999997777777 589999999999999988876655443
No 198
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=69.84 E-value=1.3e+02 Score=32.13 Aligned_cols=181 Identities=12% Similarity=0.134 Sum_probs=91.7
Q ss_pred CCccceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEE-EccCCCCCcceeEE
Q psy10286 473 GDSLSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWN-KVSPMCFKRSAVGA 551 (748)
Q Consensus 473 g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~-~~~~~~~~r~~~~~ 551 (748)
+.+.+.++.+|..-+---++..+...-.-+++-..++..|++-=+ ..+-+++.|..+-+=- -++.+..|-+..-.
T Consensus 402 de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfr----qtDPlfviDlsNPenPkvlGeLKIPGfS~YL 477 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFR----QTDPLFVIDLSNPENPKVLGELKIPGFSEYL 477 (603)
T ss_pred CCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEe----ccCceEEEEcCCCCCCceeEEEecCCchhhc
Confidence 366788999998887776776665554456777778888887532 3455777776653211 11222222111111
Q ss_pred EEE-CCEEEEEeCCCCCCCCceEEEEeCCC-------------CeEEEccCCCCCCcceEEEEECC--EEEEEccCCCCc
Q psy10286 552 AAL-NDKLYVCGGYDGVSSLNTVECYEPDK-------------DQWRIVKSMQKHRSAGGVIAFDS--YVYALGGHDGLS 615 (748)
Q Consensus 552 ~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~-------------~~W~~~~~~~~~r~~~~~~~~~~--~iyv~GG~~~~~ 615 (748)
--+ ++.+.-+|-..|. -.+..||.+. +-|+.+ -+.|.+..++. .|+.+--..
T Consensus 478 Hpigen~~lGvG~~~g~---vKiSLFdiSdl~~PkEv~~y~l~~~wspv------f~dhHAFl~d~~~~ifFlPay~--- 545 (603)
T COG4880 478 HPIGENRLLGVGAYQGG---VKISLFDISDLAAPKEVSNYTLSNAWSPV------FYDHHAFLYDPEAEIFFLPAYL--- 545 (603)
T ss_pred cccCCCcEEEeecccCC---ceEEEEeccCCCCchhhhheehhhhcchh------hhccceeecCCcccEEEecccC---
Confidence 112 3455555544432 2344455432 223322 23344444432 454443221
Q ss_pred ccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccC
Q psy10286 616 IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS 682 (748)
Q Consensus 616 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 682 (748)
.-+.|-.+.+ -..+..--...-.-.+..+++.+|++|| +.+|.|| .+.|+.++.
T Consensus 546 ---~gyif~iedg-~kl~k~~e~k~na~RA~fi~dylY~vg~-------~ev~~ld--enswe~Vge 599 (603)
T COG4880 546 ---GGYIFFIEDG-SKLRKRAERKLNADRAFFIKDYLYLVGG-------NEVWKLD--ENSWEVVGE 599 (603)
T ss_pred ---ccEEEEEecC-ceeeehhhhcccceeeEEecceEEEecc-------ceeEEec--cchHhhhhh
Confidence 1122322222 1111110111112335667999999998 7899998 567887764
No 199
>KOG0296|consensus
Probab=69.75 E-value=1.4e+02 Score=30.93 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=77.6
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcce--EEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAG--GVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
+..+.+-||-+ +..+.|+..++.|-. .++.....- ....+++.+.+.||.++.- .++.-+....+|..
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~--eltgHKDSVt~~~FshdgtlLATGdmsG~v---~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAG--ELTGHKDSVTCCSFSHDGTLLATGDMSGKV---LVFKVSTGGEQWKL 144 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCccee--EecCCCCceEEEEEccCceEEEecCCCccE---EEEEcccCceEEEe
Confidence 44566677754 456788888887532 233322222 3334588999999986531 23334444556765
Q ss_pred ccCCC---CCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCC
Q psy10286 633 VKPML---TKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVS 709 (748)
Q Consensus 633 ~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~ 709 (748)
..++. --+ .|- ...|++.|-.+ .++|+|...+..-.++=+-+..+..++...-+|+-.+.|=.+
T Consensus 145 ~~e~~dieWl~-WHp----~a~illAG~~D-----GsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d--- 211 (399)
T KOG0296|consen 145 DQEVEDIEWLK-WHP----RAHILLAGSTD-----GSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD--- 211 (399)
T ss_pred ecccCceEEEE-ecc----cccEEEeecCC-----CcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC---
Confidence 42211 000 011 24577777544 368999887753333311133344445455566665555321
Q ss_pred CCCeEEEEeCCCCc
Q psy10286 710 NLPTVEVYDPSTDS 723 (748)
Q Consensus 710 ~~~~v~~yd~~~~~ 723 (748)
.++-++||++..
T Consensus 212 --gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 212 --GTIIVWNPKTGQ 223 (399)
T ss_pred --ceEEEEecCCCc
Confidence 357778887763
No 200
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=69.39 E-value=1.7e+02 Score=31.58 Aligned_cols=223 Identities=11% Similarity=0.088 Sum_probs=108.2
Q ss_pred ceEEEEeCCCCceEEccC----CCcccceeEEEEECCEEEEEcc--CCCCCCCCeEEEEECCCCeEEEccCCCCCcceeE
Q psy10286 477 STVEVFDPLVGRWQMAEA----MSMLRSRVGVAVMKNRLYAFGG--YNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVG 550 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~----~~~~r~~~~~~~~~~~iyv~GG--~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~ 550 (748)
+++|.|+..+++=.++.+ ...||... +|+-.+|.- ...+....+++.++...++-+++.-.. |....
T Consensus 59 DdlWe~slk~g~~~ritS~lGVvnn~kf~p-----dGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTyfG--r~fT~ 131 (668)
T COG4946 59 DDLWEYSLKDGKPLRITSGLGVVNNPKFSP-----DGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITYFG--RRFTR 131 (668)
T ss_pred hHHHHhhhccCCeeEEecccceeccccCCC-----CCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEEec--cccce
Confidence 678888888776555432 12222211 111111100 001223457777877777766665442 32222
Q ss_pred EEE--ECCEEEEEeCCC-CCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCC---------CCccc
Q psy10286 551 AAA--LNDKLYVCGGYD-GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHD---------GLSIF 617 (748)
Q Consensus 551 ~~~--~~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~---------~~~~~ 617 (748)
++- -+|.|.|.--.- .......++..+...-... +++.. -.+..+. +| +.++|-.. ..+..
T Consensus 132 VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~LnlG--pathiv~~dg-~ivigRntydLP~WK~YkGGtr 205 (668)
T COG4946 132 VAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---PLNLG--PATHIVIKDG-IIVIGRNTYDLPHWKGYKGGTR 205 (668)
T ss_pred eeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---eccCC--ceeeEEEeCC-EEEEccCcccCcccccccCCcc
Confidence 222 367777764321 1111222333322222222 22211 1222233 55 55555321 11234
Q ss_pred CeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECC
Q psy10286 618 DSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMG 697 (748)
Q Consensus 618 ~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 697 (748)
..+|.=.....+.+++-+++..-+ +-+.++++||.+--..+- ..+|.-|.+.+.-..-.+.. -+.+.-+..+|
T Consensus 206 GklWis~d~g~tFeK~vdl~~~vS--~PmIV~~RvYFlsD~eG~---GnlYSvdldGkDlrrHTnFt--dYY~R~~nsDG 278 (668)
T COG4946 206 GKLWISSDGGKTFEKFVDLDGNVS--SPMIVGERVYFLSDHEGV---GNLYSVDLDGKDLRRHTNFT--DYYPRNANSDG 278 (668)
T ss_pred ceEEEEecCCcceeeeeecCCCcC--CceEEcceEEEEecccCc---cceEEeccCCchhhhcCCch--hccccccCCCC
Confidence 456665555556666666654443 335678999999876654 35555566554333322221 11222233466
Q ss_pred EEEEE--eCCCCCCCCCeEEEEeCCCCceEec
Q psy10286 698 KLWAI--GGYDGVSNLPTVEVYDPSTDSWAFV 727 (748)
Q Consensus 698 ~l~v~--GG~~~~~~~~~v~~yd~~~~~W~~~ 727 (748)
+=+|| || ++|.|||+++.-+.+
T Consensus 279 krIvFq~~G--------dIylydP~td~lekl 302 (668)
T COG4946 279 KRIVFQNAG--------DIYLYDPETDSLEKL 302 (668)
T ss_pred cEEEEecCC--------cEEEeCCCcCcceee
Confidence 65555 44 799999999988765
No 201
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=68.27 E-value=1.4e+02 Score=30.09 Aligned_cols=201 Identities=13% Similarity=0.119 Sum_probs=97.1
Q ss_pred CCCeEEEcc---CCC--CCcceeEEEEE--CCEEEEEe--CCCCC--CCCceEEEEeCC-CCeEEEccCCCCC------C
Q psy10286 532 VRRVWNKVS---PMC--FKRSAVGAAAL--NDKLYVCG--GYDGV--SSLNTVECYEPD-KDQWRIVKSMQKH------R 593 (748)
Q Consensus 532 ~t~~W~~~~---~~~--~~r~~~~~~~~--~~~iyv~G--G~~~~--~~~~~~~~yd~~-~~~W~~~~~~~~~------r 593 (748)
.-.+|+... ..+ ..+....+.+. +|+|+++. +.... ....-.+.+..+ ..+|+....++.. .
T Consensus 28 ~G~tWs~~~~v~~~~~~~~~~~~p~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~~~~~~~~~~ 107 (275)
T PF13088_consen 28 GGKTWSEPRIVADGPKPGRRYGNPSLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLPPGWFGNFSG 107 (275)
T ss_dssp CTTEEEEEEEEETSTBTTCEEEEEEEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEHHHCCCSCEE
T ss_pred CCCeeCCCEEEeeccccCCcccCcEEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccccccccceec
Confidence 446798743 223 22333333332 88988886 22211 111111244443 5689887644322 1
Q ss_pred cce--EEEEECCEEEEEccCCCCcccCeEEEEEC-CCCcEEEccCCCCC-CcceeEEE-E-CCEEEEEeccCCCccccEE
Q psy10286 594 SAG--GVIAFDSYVYALGGHDGLSIFDSVERYDP-KTDEWTSVKPMLTK-RCRLGVAA-L-NNKIYVCGGYDGAIFLQSV 667 (748)
Q Consensus 594 ~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~-~~~~W~~~~~~p~~-r~~~~~~~-~-~~~i~v~GG~~~~~~~~~v 667 (748)
... .+..-+|.+++..=............|.. .-.+|+.....+.. .....+.+ . +|.|+++--..... ...
T Consensus 108 ~~~~~~i~~~~G~l~~~~~~~~~~~~~~~~~~S~D~G~tW~~~~~~~~~~~~~e~~~~~~~dG~l~~~~R~~~~~--~~~ 185 (275)
T PF13088_consen 108 PGRGPPIQLPDGRLIAPYYHESGGSFSAFVYYSDDGGKTWSSGSPIPDGQGECEPSIVELPDGRLLAVFRTEGND--DIY 185 (275)
T ss_dssp CSEEEEEEECTTEEEEEEEEESSCEEEEEEEEESSTTSSEEEEEECECSEEEEEEEEEEETTSEEEEEEEECSST--EEE
T ss_pred cceeeeeEecCCCEEEEEeeccccCcceEEEEeCCCCceeeccccccccCCcceeEEEECCCCcEEEEEEccCCC--cEE
Confidence 112 23444888887621111111233444444 45569988765422 33333333 3 67888886442111 233
Q ss_pred EEEeCC-CCcEEEcc--CCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCCCCC
Q psy10286 668 EMYDPI-TDEWKMIA--SMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHE 734 (748)
Q Consensus 668 ~~yd~~-~~~W~~~~--~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r 734 (748)
+.+... -.+|+... .+|.+......+.+ +++++++.........-.+.+-.-...+|.....+....
T Consensus 186 ~~~S~D~G~TWs~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~r~~l~l~~S~D~g~tW~~~~~i~~~~ 256 (275)
T PF13088_consen 186 ISRSTDGGRTWSPPQPTNLPNPNSSISLVRLSDGRLLLVYNNPDGRSNLSLYVSEDGGKTWSRPKTIDDGP 256 (275)
T ss_dssp EEEESSTTSS-EEEEEEECSSCCEEEEEEECTTSEEEEEEECSSTSEEEEEEEECTTCEEEEEEEEEEEEE
T ss_pred EEEECCCCCcCCCceecccCcccCCceEEEcCCCCEEEEEECCCCCCceEEEEEeCCCCcCCccEEEeCCC
Confidence 344443 35799854 45555555555554 678888877221111112333334478998765555444
No 202
>KOG0296|consensus
Probab=67.58 E-value=1.6e+02 Score=30.62 Aligned_cols=144 Identities=17% Similarity=0.234 Sum_probs=79.6
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCC--CeEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDK--DQWRI 585 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~--~~W~~ 585 (748)
++.+.+.||.+ +..+.++..++.|--.-.=...---.....++|.+.+-||.+| .+.+|+..+ ..|..
T Consensus 75 ~~~l~aTGGgD-----D~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG-----~v~v~~~stg~~~~~~ 144 (399)
T KOG0296|consen 75 NNNLVATGGGD-----DLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSG-----KVLVFKVSTGGEQWKL 144 (399)
T ss_pred CCceEEecCCC-----ceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCc-----cEEEEEcccCceEEEe
Confidence 56677888854 4567888888875432111111111233334888888888764 344554444 45665
Q ss_pred ccCCCC---CCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCc
Q psy10286 586 VKSMQK---HRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAI 662 (748)
Q Consensus 586 ~~~~~~---~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~ 662 (748)
..++.. -++ |. .+.|+++|-.++ .+|+|......-.++=+-+..+...+-..-+|+-.+.|-.+
T Consensus 145 ~~e~~dieWl~W-Hp----~a~illAG~~DG-----svWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d--- 211 (399)
T KOG0296|consen 145 DQEVEDIEWLKW-HP----RAHILLAGSTDG-----SVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD--- 211 (399)
T ss_pred ecccCceEEEEe-cc----cccEEEeecCCC-----cEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC---
Confidence 422210 011 11 245677776544 58999887754444323344444455555567766666332
Q ss_pred cccEEEEEeCCCCc
Q psy10286 663 FLQSVEMYDPITDE 676 (748)
Q Consensus 663 ~~~~v~~yd~~~~~ 676 (748)
.++.++|+++.+
T Consensus 212 --gti~~Wn~ktg~ 223 (399)
T KOG0296|consen 212 --GTIIVWNPKTGQ 223 (399)
T ss_pred --ceEEEEecCCCc
Confidence 467888888764
No 203
>KOG0281|consensus
Probab=66.46 E-value=1.2e+02 Score=31.25 Aligned_cols=96 Identities=16% Similarity=0.309 Sum_probs=58.2
Q ss_pred EEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 599 IAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 599 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
+-++++ |++...++ ..+-.+++.|.... ..+..-+.+.++..++|++.|-|..+ ++|-.+|...+.--
T Consensus 326 Vdfd~k-yIVsASgD----RTikvW~~st~efv--Rtl~gHkRGIAClQYr~rlvVSGSSD-----ntIRlwdi~~G~cL 393 (499)
T KOG0281|consen 326 VDFDDK-YIVSASGD----RTIKVWSTSTCEFV--RTLNGHKRGIACLQYRDRLVVSGSSD-----NTIRLWDIECGACL 393 (499)
T ss_pred eccccc-eEEEecCC----ceEEEEeccceeee--hhhhcccccceehhccCeEEEecCCC-----ceEEEEeccccHHH
Confidence 345677 44433211 34666776666543 34556667778888999999988653 67888887765432
Q ss_pred EccCCCCCCcceEEEEECCEEEEEeCCCCC
Q psy10286 679 MIASMNVMRSRVALVANMGKLWAIGGYDGV 708 (748)
Q Consensus 679 ~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~ 708 (748)
.+ +...-.-..++-.+++=+|-||+++.
T Consensus 394 Rv--LeGHEeLvRciRFd~krIVSGaYDGk 421 (499)
T KOG0281|consen 394 RV--LEGHEELVRCIRFDNKRIVSGAYDGK 421 (499)
T ss_pred HH--HhchHHhhhheeecCceeeeccccce
Confidence 22 10001112456678888888887764
No 204
>KOG2321|consensus
Probab=66.04 E-value=1.1e+02 Score=33.79 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=42.6
Q ss_pred CcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEE
Q psy10286 545 KRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 545 ~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
|+.+..++.. .-.||+.|- -.+++++|.+.+.|-.-=....+-..+....--+.++.+||.++ .|+.
T Consensus 133 P~~GRDm~y~~~scDly~~gs------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g-----~VEf 201 (703)
T KOG2321|consen 133 PKFGRDMKYHKPSCDLYLVGS------GSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDG-----VVEF 201 (703)
T ss_pred CcCCccccccCCCccEEEeec------CcceEEEEccccccccccccccccceeeeecCccceEEecccCc-----eEEE
Confidence 4444444433 335776553 26899999999988332111111122222222457888888743 6899
Q ss_pred EECCCCc
Q psy10286 623 YDPKTDE 629 (748)
Q Consensus 623 yd~~~~~ 629 (748)
+||.+..
T Consensus 202 wDpR~ks 208 (703)
T KOG2321|consen 202 WDPRDKS 208 (703)
T ss_pred ecchhhh
Confidence 9998764
No 205
>KOG2048|consensus
Probab=65.40 E-value=2.4e+02 Score=31.86 Aligned_cols=223 Identities=16% Similarity=0.155 Sum_probs=102.3
Q ss_pred CccceEEEEeCCCCceEEccC--CCcccceeEEEEE-CCEEEEEccCCC-----CCCCCeEEEEECCCCe-EEEccCCCC
Q psy10286 474 DSLSTVEVFDPLVGRWQMAEA--MSMLRSRVGVAVM-KNRLYAFGGYNG-----SERLSTVEEFDPVRRV-WNKVSPMCF 544 (748)
Q Consensus 474 ~~~~~~~~yd~~~~~W~~~~~--~~~~r~~~~~~~~-~~~iyv~GG~~~-----~~~~~~v~~yd~~t~~-W~~~~~~~~ 544 (748)
.....++.|++.. .|..-.. .|.-|+--+.+.. ++++|-+|+.+. -...+..+.+|+..+. |.-... |.
T Consensus 44 Rt~g~IEiwN~~~-~w~~~~vi~g~~drsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~-p~ 121 (691)
T KOG2048|consen 44 RTDGNIEIWNLSN-NWFLEPVIHGPEDRSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAIN-PE 121 (691)
T ss_pred ccCCcEEEEccCC-CceeeEEEecCCCCceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCcceeEEEeC-Cc
Confidence 3445789999987 5755443 3455666666666 889999987431 1112333344443332 433211 10
Q ss_pred CcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEE-EEccCCCCcccCeEEEE
Q psy10286 545 KRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVY-ALGGHDGLSIFDSVERY 623 (748)
Q Consensus 545 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iy-v~GG~~~~~~~~~~~~y 623 (748)
. .-.+....+|.+|.+-|. .++..|+ ..++......-....+.... ++||..+. -+-++
T Consensus 122 ~-~~l~IgcddGvl~~~s~~------p~~I~~~---------r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg----~Iriw 181 (691)
T KOG2048|consen 122 N-TILAIGCDDGVLYDFSIG------PDKITYK---------RSLMRQKSRVLSLSWNPTGTKIAGGSIDG----VIRIW 181 (691)
T ss_pred c-ceEEeecCCceEEEEecC------CceEEEE---------eecccccceEEEEEecCCccEEEecccCc----eEEEE
Confidence 0 111111224444444331 2223332 22332222223334455444 67776321 25666
Q ss_pred ECCCCcEEEccCCCCC-------CcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE-
Q psy10286 624 DPKTDEWTSVKPMLTK-------RCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN- 695 (748)
Q Consensus 624 d~~~~~W~~~~~~p~~-------r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~- 695 (748)
|..+++=-.+-.|... -.-.++..+.+..++.|-.. ..|..+|....+-.+--....+- -.++++-
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~tI~sgDS~-----G~V~FWd~~~gTLiqS~~~h~ad-Vl~Lav~~ 255 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDSTIASGDSA-----GTVTFWDSIFGTLIQSHSCHDAD-VLALAVAD 255 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEeecCcEEEecCC-----ceEEEEcccCcchhhhhhhhhcc-eeEEEEcC
Confidence 6666554332222111 11234445566666666433 46777887664322211111111 1222332
Q ss_pred CCEEEEEeCCCCCCCCCeEEEEeCCC--CceEecCC
Q psy10286 696 MGKLWAIGGYDGVSNLPTVEVYDPST--DSWAFVAP 729 (748)
Q Consensus 696 ~~~l~v~GG~~~~~~~~~v~~yd~~~--~~W~~~~~ 729 (748)
++.-++.+|.++ .+..|-..+ ++|.....
T Consensus 256 ~~d~vfsaGvd~-----~ii~~~~~~~~~~wv~~~~ 286 (691)
T KOG2048|consen 256 NEDRVFSAGVDP-----KIIQYSLTTNKSEWVINSR 286 (691)
T ss_pred CCCeEEEccCCC-----ceEEEEecCCccceeeecc
Confidence 334555566543 466665544 35766543
No 206
>KOG0289|consensus
Probab=65.25 E-value=2e+02 Score=30.76 Aligned_cols=130 Identities=16% Similarity=0.181 Sum_probs=72.0
Q ss_pred eeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEe
Q psy10286 501 RVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYE 577 (748)
Q Consensus 501 ~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd 577 (748)
.++++.. +|.||..|-.+ ..+-.||..+.. .++.+|.--..-.+..+ ||+-.+.+--+ .+|.+||
T Consensus 350 ~ts~~fHpDgLifgtgt~d-----~~vkiwdlks~~--~~a~Fpght~~vk~i~FsENGY~Lat~add-----~~V~lwD 417 (506)
T KOG0289|consen 350 YTSAAFHPDGLIFGTGTPD-----GVVKIWDLKSQT--NVAKFPGHTGPVKAISFSENGYWLATAADD-----GSVKLWD 417 (506)
T ss_pred eEEeeEcCCceEEeccCCC-----ceEEEEEcCCcc--ccccCCCCCCceeEEEeccCceEEEEEecC-----CeEEEEE
Confidence 4445555 77777766533 357788988775 55555542222233333 55555554422 2488888
Q ss_pred CCCCeEEEccCCCCCCc-ceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC
Q psy10286 578 PDKDQWRIVKSMQKHRS-AGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN 649 (748)
Q Consensus 578 ~~~~~W~~~~~~~~~r~-~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~ 649 (748)
..... .....+.+-. ......+ .|...++||. .-.++.|+-.+.+|+.+..++.--.....+.++
T Consensus 418 LRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~-----~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg 485 (506)
T KOG0289|consen 418 LRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGS-----DLQVYICKKKTKSWTEIKELADHSGLSTGVRFG 485 (506)
T ss_pred ehhhc--ccceeeccccccceeEEEcCCCCeEEeecc-----eeEEEEEecccccceeeehhhhcccccceeeec
Confidence 87655 2222222221 2222333 3566667764 235788888899999997665433333444443
No 207
>KOG2048|consensus
Probab=65.05 E-value=2.4e+02 Score=31.82 Aligned_cols=261 Identities=18% Similarity=0.234 Sum_probs=127.1
Q ss_pred CCCCcceEeecCCCCceeecc----cccccceEEecccccccCCCccceEEEEeCCC--CceEEccCC-CcccceeEEEE
Q psy10286 434 GDSLSTVEVFDPLVGRWQMAE----EETLSNAVISTKSCLTKAGDSLSTVEVFDPLV--GRWQMAEAM-SMLRSRVGVAV 506 (748)
Q Consensus 434 ~~~~~~~~~y~~~~~~W~~~~----~~~~~~~~~~~~~~~~~~g~~~~~~~~yd~~~--~~W~~~~~~-~~~r~~~~~~~ 506 (748)
+++..++..||+..++-..-- .....-++...+..+..+|. -..+..|-..+ ++|.....- ..++.--++++
T Consensus 221 gDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGv-d~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av 299 (691)
T KOG2048|consen 221 GDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGV-DPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAV 299 (691)
T ss_pred ecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccC-CCceEEEEecCCccceeeeccccCCcccceeeee
Confidence 344567889999887654321 12222222222233444432 23455554443 358766543 34455556777
Q ss_pred ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 507 MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 507 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
+++ +.+.||.+..-......++...... .+-+.++..-.++.-.++++++= |.-.-.-|+..
T Consensus 300 ~~~-~l~sgG~d~~l~i~~s~~~~~~~h~----~~~~~p~~~~v~~a~~~~L~~~w-------------~~h~v~lwrlG 361 (691)
T KOG2048|consen 300 IEN-ALISGGRDFTLAICSSREFKNMDHR----QKNLFPASDRVSVAPENRLLVLW-------------KAHGVDLWRLG 361 (691)
T ss_pred ecc-eEEecceeeEEEEccccccCchhhh----ccccccccceeecCccceEEEEe-------------ccccccceecc
Confidence 777 6667886533222222221111111 11122333333333345555542 11122223322
Q ss_pred cC---------------CCCCCcc-eEEEEECCEEEEEccCCCCcccCeEEEEECCCC-cEEEccCCCCCCcceeEEEE-
Q psy10286 587 KS---------------MQKHRSA-GGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD-EWTSVKPMLTKRCRLGVAAL- 648 (748)
Q Consensus 587 ~~---------------~~~~r~~-~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~-~W~~~~~~p~~r~~~~~~~~- 648 (748)
+. .+.++.- +++..-+|.+..+|-... -.+++..+..+ .-+.+..+|..+...+....
T Consensus 362 S~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~~~----~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ft 437 (691)
T KOG2048|consen 362 SVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTVSR----TKIYRLQPDPNVKVINVDDVPLALLDASAISFT 437 (691)
T ss_pred CcccccccChhhheeeecCCccceeeeccCCCCCEEEEeeccc----eEEEEeccCcceeEEEeccchhhhccceeeEEE
Confidence 22 1112222 222333566666654321 23555554433 33445677777655554433
Q ss_pred --CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCC-CCCCcc--eEEE--EECCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 649 --NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASM-NVMRSR--VALV--ANMGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 649 --~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~-p~~r~~--~~~~--~~~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
+++++++- ....+++.++..+-+-.++... +.+... ..++ ..|+.|.+.++. ..|++|+.++
T Consensus 438 id~~k~~~~s-----~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~------g~I~v~nl~~ 506 (691)
T KOG2048|consen 438 IDKNKLFLVS-----KNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR------GQIFVYNLET 506 (691)
T ss_pred ecCceEEEEe-----cccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc------ceEEEEEccc
Confidence 56777765 2234677777777776666332 222221 1222 236778888753 3699999999
Q ss_pred CceEecC
Q psy10286 722 DSWAFVA 728 (748)
Q Consensus 722 ~~W~~~~ 728 (748)
.+-+...
T Consensus 507 ~~~~~l~ 513 (691)
T KOG2048|consen 507 LESHLLK 513 (691)
T ss_pred ceeecch
Confidence 9887765
No 208
>KOG0266|consensus
Probab=63.99 E-value=2.3e+02 Score=31.22 Aligned_cols=182 Identities=17% Similarity=0.210 Sum_probs=94.0
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCC-e-EEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRR-V-WNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWR 584 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~-~-W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 584 (748)
+++ |++.|.. ...+..+|...+ . =..+...+... ++++.. ++.+++.|+.+ ..+..+|..+.+-.
T Consensus 214 d~~-~l~s~s~----D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~~~ 281 (456)
T KOG0266|consen 214 DGS-YLLSGSD----DKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGECV 281 (456)
T ss_pred CCc-EEEEecC----CceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC-----CcEEEEeccCCeEE
Confidence 555 4555432 246788888433 2 22333333333 344433 56888898865 57888998885433
Q ss_pred EccCCCCCCcceEEEE--ECCEEEEEccCCCCcccCeEEEEECCCCcEE---EccCCCCCCcceeEEEE--CCEEEEEec
Q psy10286 585 IVKSMQKHRSAGGVIA--FDSYVYALGGHDGLSIFDSVERYDPKTDEWT---SVKPMLTKRCRLGVAAL--NNKIYVCGG 657 (748)
Q Consensus 585 ~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~p~~r~~~~~~~~--~~~i~v~GG 657 (748)
.. +......-+++. -++..++.+..+ ..+..||..+..-. .+.....+. ....+.. +++.++.+.
T Consensus 282 ~~--l~~hs~~is~~~f~~d~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~ 353 (456)
T KOG0266|consen 282 RK--LKGHSDGISGLAFSPDGNLLVSASYD-----GTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSAS 353 (456)
T ss_pred Ee--eeccCCceEEEEECCCCCEEEEcCCC-----ccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEec
Confidence 32 222222222222 367777777654 35888998887732 222222222 2233333 444444443
Q ss_pred cCCCccccEEEEEeCCCCc----EEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 658 YDGAIFLQSVEMYDPITDE----WKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~----W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
-+ +.+-.||..... |...... .+..+..+.. +++..+.|+.+ ..|+++|+.+
T Consensus 354 ~d-----~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d-----~~v~~~~~~s 410 (456)
T KOG0266|consen 354 LD-----RTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSED-----GSVYVWDSSS 410 (456)
T ss_pred CC-----CeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEeCC-----ceEEEEeCCc
Confidence 22 255566655432 3222222 1444444434 66666676644 3688888876
No 209
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=63.77 E-value=1.1e+02 Score=32.62 Aligned_cols=229 Identities=12% Similarity=0.021 Sum_probs=104.5
Q ss_pred CcEEEEEcCccCCCCCCcceEeecCCCCceeeccccc---ccceEEecc-cc-cccCCCccceEEEEeCCCCceEEccCC
Q psy10286 421 MGHIFAVGGLTKAGDSLSTVEVFDPLVGRWQMAEEET---LSNAVISTK-SC-LTKAGDSLSTVEVFDPLVGRWQMAEAM 495 (748)
Q Consensus 421 ~~~i~v~GG~~~~~~~~~~~~~y~~~~~~W~~~~~~~---~~~~~~~~~-~~-~~~~g~~~~~~~~yd~~~~~W~~~~~~ 495 (748)
+++-++|+|-. +...+++..|..++.-.-+.... ....+.+.. .. .|.. ..+.++..|..+.+=+.+-..
T Consensus 46 dG~kllF~s~~---dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~--~~~~l~~vdL~T~e~~~vy~~ 120 (386)
T PF14583_consen 46 DGRKLLFASDF---DGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVK--NGRSLRRVDLDTLEERVVYEV 120 (386)
T ss_dssp TS-EEEEEE-T---TSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEE--TTTEEEEEETTT--EEEEEE-
T ss_pred CCCEEEEEecc---CCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEE--CCCeEEEEECCcCcEEEEEEC
Confidence 44445555532 22356788888888777665422 112222222 22 1221 125788899998877677667
Q ss_pred CcccceeEEEEE--CCEEEEEccCC------------------CCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-E
Q psy10286 496 SMLRSRVGVAVM--KNRLYAFGGYN------------------GSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA-L 554 (748)
Q Consensus 496 ~~~r~~~~~~~~--~~~iyv~GG~~------------------~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~ 554 (748)
|..-.+....+. ++.. ++|=.. .......+...|..+++.+.+-.-. .--+|--.. .
T Consensus 121 p~~~~g~gt~v~n~d~t~-~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~-~wlgH~~fsP~ 198 (386)
T PF14583_consen 121 PDDWKGYGTWVANSDCTK-LVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDT-DWLGHVQFSPT 198 (386)
T ss_dssp -TTEEEEEEEEE-TTSSE-EEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEES-S-EEEEEEETT
T ss_pred CcccccccceeeCCCccE-EEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecC-ccccCcccCCC
Confidence 766665555444 2333 222110 0123456788888888876652211 112233322 2
Q ss_pred CCEEEEEeCCCCCCCC-ceEEEEeCCCCeEEEcc-CCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 555 NDKLYVCGGYDGVSSL-NTVECYEPDKDQWRIVK-SMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~-~~~~~yd~~~~~W~~~~-~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
+..+.++.-.+..... ..+|..|........+- .++....+|---+.+| .|+..+...+ +.-.-+..||+.+..=+
T Consensus 199 dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~-~~~~~i~~~d~~t~~~~ 277 (386)
T PF14583_consen 199 DPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPG-GQDFWIAGYDPDTGERR 277 (386)
T ss_dssp EEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETT-T--EEEEEE-TTT--EE
T ss_pred CCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCC-CCceEEEeeCCCCCCce
Confidence 4455556433222333 37888887766555553 3333344454444455 4444343222 22235888999987644
Q ss_pred EccCCCCCCcceeEEEECCEEEEEeccC
Q psy10286 632 SVKPMLTKRCRLGVAALNNKIYVCGGYD 659 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~ 659 (748)
.+..+ +++.|-+...++++++--|.+
T Consensus 278 ~~~~~--p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 278 RLMEM--PWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp EEEEE---SEEEEEE-TTSSEEEEEE--
T ss_pred EEEeC--CceeeeEEcCCCCEEEecCCC
Confidence 45444 467888888899999887754
No 210
>KOG0315|consensus
Probab=63.49 E-value=1.6e+02 Score=29.07 Aligned_cols=217 Identities=11% Similarity=0.105 Sum_probs=106.7
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
..+..||..++.=..+...-.++...+++-. +|+-...||.++ .+-++|.+.-.-.+.-..+.+.. +.+..
T Consensus 61 qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg-----t~kIWdlR~~~~qR~~~~~spVn--~vvlh 133 (311)
T KOG0315|consen 61 QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG-----TVKIWDLRSLSCQRNYQHNSPVN--TVVLH 133 (311)
T ss_pred CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc-----eEEEEeccCcccchhccCCCCcc--eEEec
Confidence 4688999988764333333334444444443 677777777654 45666766532222211121111 22222
Q ss_pred --CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCc-ceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 555 --NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRS-AGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 555 --~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~-~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
.+.++ .|-. ...++++|..++..... .+|..-. -.++++. +|++. .++.+. ...++++.-+.+-
T Consensus 134 pnQteLi-s~dq-----sg~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml-~a~nnk----G~cyvW~l~~~~~ 201 (311)
T KOG0315|consen 134 PNQTELI-SGDQ-----SGNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSML-AAANNK----GNCYVWRLLNHQT 201 (311)
T ss_pred CCcceEE-eecC-----CCcEEEEEccCCccccc-cCCCCCcceeeEEEcCCCcEE-EEecCC----ccEEEEEccCCCc
Confidence 23333 3332 24688999998876544 2333322 2233443 44443 343322 2466666555332
Q ss_pred -EEccCC--CCCCcceeEE-EE--CCEEEEEeccCCCccccEEEEEeCCCCcEE-EccCCCCCCcceEEEEE-CCEEEEE
Q psy10286 631 -TSVKPM--LTKRCRLGVA-AL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWK-MIASMNVMRSRVALVAN-MGKLWAI 702 (748)
Q Consensus 631 -~~~~~~--p~~r~~~~~~-~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~-~~~~~p~~r~~~~~~~~-~~~l~v~ 702 (748)
+.+.+. -..+..|..- .+ +++.++..+.+ ..+.+++.++. .. ++.--...|....|+.. +++.+|.
T Consensus 202 ~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd-----ktv~iwn~~~~-~kle~~l~gh~rWvWdc~FS~dg~YlvT 275 (311)
T KOG0315|consen 202 ASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD-----KTVKIWNTDDF-FKLELVLTGHQRWVWDCAFSADGEYLVT 275 (311)
T ss_pred cccceEhhheecccceEEEEEECCCCcEEEeecCC-----ceEEEEecCCc-eeeEEEeecCCceEEeeeeccCccEEEe
Confidence 112111 1234444432 22 66666665533 57888887776 21 11111223555555554 5666666
Q ss_pred eCCCCCCCCCeEEEEeCCCCc
Q psy10286 703 GGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~~ 723 (748)
|+.+ ..+..+|+++++
T Consensus 276 assd-----~~~rlW~~~~~k 291 (311)
T KOG0315|consen 276 ASSD-----HTARLWDLSAGK 291 (311)
T ss_pred cCCC-----CceeecccccCc
Confidence 6643 346677777665
No 211
>PTZ00420 coronin; Provisional
Probab=63.07 E-value=2.7e+02 Score=31.65 Aligned_cols=150 Identities=13% Similarity=0.115 Sum_probs=70.4
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC
Q psy10286 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS 588 (748)
Q Consensus 510 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 588 (748)
.+++.||.+ ..+..||..+.+=.. .+..+..-.++.. .+|.+++.|+.+ ..+..||+.+.+= +..
T Consensus 139 ~iLaSgS~D-----gtIrIWDl~tg~~~~--~i~~~~~V~SlswspdG~lLat~s~D-----~~IrIwD~Rsg~~--i~t 204 (568)
T PTZ00420 139 YIMCSSGFD-----SFVNIWDIENEKRAF--QINMPKKLSSLKWNIKGNLLSGTCVG-----KHMHIIDPRKQEI--ASS 204 (568)
T ss_pred eEEEEEeCC-----CeEEEEECCCCcEEE--EEecCCcEEEEEECCCCCEEEEEecC-----CEEEEEECCCCcE--EEE
Confidence 455667654 367788888764111 1111111222322 277787777644 4688999987642 211
Q ss_pred CCCCCc--ceEEEE-----ECCEEEEEccCCCCcccCeEEEEECCC-CcEEEccCCCCCCcceeEEEE---CCEEEEEec
Q psy10286 589 MQKHRS--AGGVIA-----FDSYVYALGGHDGLSIFDSVERYDPKT-DEWTSVKPMLTKRCRLGVAAL---NNKIYVCGG 657 (748)
Q Consensus 589 ~~~~r~--~~~~~~-----~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG 657 (748)
+..... ...++. -++..++.+|.++.. ...+..||... ..-...-.+.. ..+.-+..+ .+.+|+.|.
T Consensus 205 l~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~-~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGk 282 (568)
T PTZ00420 205 FHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNN-MREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGK 282 (568)
T ss_pred EecccCCceeEEEEeeeEcCCCCEEEEEEcCCCC-ccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEE
Confidence 211110 011111 244555666654421 23588888764 22111101100 000001112 467888875
Q ss_pred cCCCccccEEEEEeCCCCcEEEc
Q psy10286 658 YDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 658 ~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
-+ ..+..|+.....-..+
T Consensus 283 GD-----~tIr~~e~~~~~~~~l 300 (568)
T PTZ00420 283 GD-----GNCRYYQHSLGSIRKV 300 (568)
T ss_pred CC-----CeEEEEEccCCcEEee
Confidence 33 4677787766543333
No 212
>KOG0281|consensus
Probab=62.90 E-value=96 Score=31.88 Aligned_cols=166 Identities=13% Similarity=0.193 Sum_probs=84.6
Q ss_pred EEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE----ECCEEEEEeCCCCCCCCceEEEEeCCC
Q psy10286 505 AVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA----LNDKLYVCGGYDGVSSLNTVECYEPDK 580 (748)
Q Consensus 505 ~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~----~~~~iyv~GG~~~~~~~~~~~~yd~~~ 580 (748)
..+++...|.|-. .+++-++|..+..-. ...++|+..+ +++++.+.|..+ .++-++|..+
T Consensus 203 lQYDD~kiVSGlr-----DnTikiWD~n~~~c~------~~L~GHtGSVLCLqyd~rviisGSSD-----sTvrvWDv~t 266 (499)
T KOG0281|consen 203 LQYDDEKIVSGLR-----DNTIKIWDKNSLECL------KILTGHTGSVLCLQYDERVIVSGSSD-----STVRVWDVNT 266 (499)
T ss_pred EEecchhhhcccc-----cCceEEeccccHHHH------HhhhcCCCcEEeeeccceEEEecCCC-----ceEEEEeccC
Confidence 3445555565543 355666665443211 1223343222 377877766543 5677888777
Q ss_pred CeEEEccCCCCCCcceEEEEE----CCEEEEEccCCCCcccCeEEEEECCCCcEEEcc---CCCCCCcceeEEEECCEEE
Q psy10286 581 DQWRIVKSMQKHRSAGGVIAF----DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVK---PMLTKRCRLGVAALNNKIY 653 (748)
Q Consensus 581 ~~W~~~~~~~~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~---~~p~~r~~~~~~~~~~~i~ 653 (748)
+. ++ ....+|+-+++ ++.+.+....+ .++-++|....+ .+. -+..-|.....+-++++ |
T Consensus 267 ge-----~l-~tlihHceaVLhlrf~ng~mvtcSkD-----rsiaVWdm~sps--~it~rrVLvGHrAaVNvVdfd~k-y 332 (499)
T KOG0281|consen 267 GE-----PL-NTLIHHCEAVLHLRFSNGYMVTCSKD-----RSIAVWDMASPT--DITLRRVLVGHRAAVNVVDFDDK-Y 332 (499)
T ss_pred Cc-----hh-hHHhhhcceeEEEEEeCCEEEEecCC-----ceeEEEeccCch--HHHHHHHHhhhhhheeeeccccc-e
Confidence 54 22 22334443332 23333322221 234444443322 111 12223444445556777 4
Q ss_pred EEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCC
Q psy10286 654 VCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYD 706 (748)
Q Consensus 654 v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~ 706 (748)
|+...+ -.++-.++..+.... ..+...+.+-+|..+.|++.|-|..+
T Consensus 333 IVsASg----DRTikvW~~st~efv--Rtl~gHkRGIAClQYr~rlvVSGSSD 379 (499)
T KOG0281|consen 333 IVSASG----DRTIKVWSTSTCEFV--RTLNGHKRGIACLQYRDRLVVSGSSD 379 (499)
T ss_pred EEEecC----CceEEEEeccceeee--hhhhcccccceehhccCeEEEecCCC
Confidence 443322 246777777665543 34556677888899999999988744
No 213
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=59.48 E-value=2.2e+02 Score=30.42 Aligned_cols=180 Identities=13% Similarity=0.166 Sum_probs=91.3
Q ss_pred CCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeE-EEccCCCCCCcceEE
Q psy10286 520 SERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQW-RIVKSMQKHRSAGGV 598 (748)
Q Consensus 520 ~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~~ 598 (748)
+...+.++.+|-.-+.--.+..+..+-.-+++-..++..|++-=. ..+-++..|.+.-+= +.++.+..|-+..-.
T Consensus 402 de~~N~vYilDe~lnvvGkltGl~~gERIYAvRf~gdv~yiVTfr----qtDPlfviDlsNPenPkvlGeLKIPGfS~YL 477 (603)
T COG4880 402 DEPVNAVYILDENLNVVGKLTGLAPGERIYAVRFVGDVLYIVTFR----QTDPLFVIDLSNPENPKVLGELKIPGFSEYL 477 (603)
T ss_pred CCccceeEEEcCCCcEEEEEeccCCCceEEEEEEeCceEEEEEEe----ccCceEEEEcCCCCCCceeEEEecCCchhhc
Confidence 445688899998887766666665555555667778888887432 234456666543221 122333333332222
Q ss_pred EEE-CCEEEEEccCCCCcccCeEEEEECC-------------CCcEEEccCCCCCCcceeEEEECC--EEEEEeccCCCc
Q psy10286 599 IAF-DSYVYALGGHDGLSIFDSVERYDPK-------------TDEWTSVKPMLTKRCRLGVAALNN--KIYVCGGYDGAI 662 (748)
Q Consensus 599 ~~~-~~~iyv~GG~~~~~~~~~~~~yd~~-------------~~~W~~~~~~p~~r~~~~~~~~~~--~i~v~GG~~~~~ 662 (748)
--. ++++.=+|-.++. -.+-.||.. ++-|+.+ -+ .|-+..++. .|+.+--+.+
T Consensus 478 Hpigen~~lGvG~~~g~---vKiSLFdiSdl~~PkEv~~y~l~~~wspv-----f~-dhHAFl~d~~~~ifFlPay~~-- 546 (603)
T COG4880 478 HPIGENRLLGVGAYQGG---VKISLFDISDLAAPKEVSNYTLSNAWSPV-----FY-DHHAFLYDPEAEIFFLPAYLG-- 546 (603)
T ss_pred cccCCCcEEEeecccCC---ceEEEEeccCCCCchhhhheehhhhcchh-----hh-ccceeecCCcccEEEecccCc--
Confidence 222 3444444443332 134445433 2234432 23 344555543 3555432211
Q ss_pred cccEEEEEeCCCCcEEEc-cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 663 FLQSVEMYDPITDEWKMI-ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 663 ~~~~v~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
-++|-.+.+ .++ ..-......-.+...++.+|++|| +.+|+||- |+|+.++.
T Consensus 547 ----gyif~iedg--~kl~k~~e~k~na~RA~fi~dylY~vg~-------~ev~~lde--nswe~Vge 599 (603)
T COG4880 547 ----GYIFFIEDG--SKLRKRAERKLNADRAFFIKDYLYLVGG-------NEVWKLDE--NSWEVVGE 599 (603)
T ss_pred ----cEEEEEecC--ceeeehhhhcccceeeEEecceEEEecc-------ceeEEecc--chHhhhhh
Confidence 123333333 111 100011112335567999999999 57898884 88988765
No 214
>KOG0305|consensus
Probab=58.99 E-value=2.9e+02 Score=30.57 Aligned_cols=225 Identities=20% Similarity=0.206 Sum_probs=113.4
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCC-CcceeEEEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCF-KRSAVGAAA 553 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~-~r~~~~~~~ 553 (748)
..++.++..+..-..+.++. +...+++.. +|...++|=.+ ..|+.||..+.+ .+..+.. ...+.++..
T Consensus 197 ~~vylW~~~s~~v~~l~~~~--~~~vtSv~ws~~G~~LavG~~~-----g~v~iwD~~~~k--~~~~~~~~h~~rvg~la 267 (484)
T KOG0305|consen 197 QSVYLWSASSGSVTELCSFG--EELVTSVKWSPDGSHLAVGTSD-----GTVQIWDVKEQK--KTRTLRGSHASRVGSLA 267 (484)
T ss_pred ceEEEEecCCCceEEeEecC--CCceEEEEECCCCCEEEEeecC-----CeEEEEehhhcc--ccccccCCcCceeEEEe
Confidence 45777777777766665554 455555555 57777777533 468899987764 3333333 333445666
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCC-cceEEEEE-CCEEEEEccCCCCcccCeEEEEECCCCcEE
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHR-SAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPKTDEWT 631 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r-~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 631 (748)
.++.+...|+.++ .+..+|.....=. +..+...+ .-++.... ++..+.-||.+ +.+..+|.....+.
T Consensus 268 W~~~~lssGsr~~-----~I~~~dvR~~~~~-~~~~~~H~qeVCgLkws~d~~~lASGgnD-----N~~~Iwd~~~~~p~ 336 (484)
T KOG0305|consen 268 WNSSVLSSGSRDG-----KILNHDVRISQHV-VSTLQGHRQEVCGLKWSPDGNQLASGGND-----NVVFIWDGLSPEPK 336 (484)
T ss_pred ccCceEEEecCCC-----cEEEEEEecchhh-hhhhhcccceeeeeEECCCCCeeccCCCc-----cceEeccCCCcccc
Confidence 6888888888653 3344444322100 00011111 11222222 45556666653 35777776332221
Q ss_pred EccCCCCCCcceeEEE-------ECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE---CCEEEE
Q psy10286 632 SVKPMLTKRCRLGVAA-------LNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN---MGKLWA 701 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~-------~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v 701 (748)
..-..|.+++ +...|+..||-..+ ..+..+|..+.+=.. ..-. ....+.... .+.|..
T Consensus 337 ------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D---~~i~fwn~~~g~~i~--~vdt-gsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 337 ------FTFTEHTAAVKALAWCPWQSGLLATGGGSAD---RCIKFWNTNTGARID--SVDT-GSQVCSLIWSKKYKELLS 404 (484)
T ss_pred ------EEEeccceeeeEeeeCCCccCceEEcCCCcc---cEEEEEEcCCCcEec--cccc-CCceeeEEEcCCCCEEEE
Confidence 1112233332 35678888885433 356777776543221 1111 111222222 466888
Q ss_pred EeCCCCCCCCCeEEEEeCCCCceEecCCCCCCCcceEEEEee
Q psy10286 702 IGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIP 743 (748)
Q Consensus 702 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 743 (748)
-.|+..+ ++.+|+..+ -.....+.+|..-++.
T Consensus 405 thG~s~n----~i~lw~~ps------~~~~~~l~gH~~RVl~ 436 (484)
T KOG0305|consen 405 THGYSEN----QITLWKYPS------MKLVAELLGHTSRVLY 436 (484)
T ss_pred ecCCCCC----cEEEEeccc------cceeeeecCCcceeEE
Confidence 8887654 566665544 1223345555544443
No 215
>KOG0286|consensus
Probab=58.68 E-value=2.1e+02 Score=28.94 Aligned_cols=210 Identities=15% Similarity=0.182 Sum_probs=105.8
Q ss_pred eEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEE---c-cCCCCCcceeEEEE
Q psy10286 478 TVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNK---V-SPMCFKRSAVGAAA 553 (748)
Q Consensus 478 ~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~---~-~~~~~~r~~~~~~~ 553 (748)
.+.++|.-|..=...-+||...-..++-.-.+.....||.+ +.+-+|+..+..=+. + ..++.-..+.+++.
T Consensus 78 klIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLd-----N~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~ 152 (343)
T KOG0286|consen 78 KLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLD-----NKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCR 152 (343)
T ss_pred eEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcC-----ceeEEEecccccccccceeeeeecCccceeEEEE
Confidence 35556655443333444555444444444477888899976 456678777542221 1 12333344445555
Q ss_pred E--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-------ECCEEEEEccCCCCcccCeEEEEE
Q psy10286 554 L--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-------FDSYVYALGGHDGLSIFDSVERYD 624 (748)
Q Consensus 554 ~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~yd 624 (748)
+ +++|.--.|- ..+-.+|.++.+=... . .+|+.-+ .++..||-||.+.. ...+|
T Consensus 153 f~dD~~ilT~SGD------~TCalWDie~g~~~~~--f----~GH~gDV~slsl~p~~~ntFvSg~cD~~-----aklWD 215 (343)
T KOG0286|consen 153 FLDDNHILTGSGD------MTCALWDIETGQQTQV--F----HGHTGDVMSLSLSPSDGNTFVSGGCDKS-----AKLWD 215 (343)
T ss_pred EcCCCceEecCCC------ceEEEEEcccceEEEE--e----cCCcccEEEEecCCCCCCeEEecccccc-----eeeee
Confidence 4 4555543331 3566788877653222 1 1222211 16789999998653 44556
Q ss_pred CCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEE--ECCEEE
Q psy10286 625 PKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVA--NMGKLW 700 (748)
Q Consensus 625 ~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~ 700 (748)
.....-.+ .++..-....++.+ +|.-++.|.-+ ...-.||+..++=..+=.-+..-.+...+. ..|+++
T Consensus 216 ~R~~~c~q--tF~ghesDINsv~ffP~G~afatGSDD-----~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 216 VRSGQCVQ--TFEGHESDINSVRFFPSGDAFATGSDD-----ATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLL 288 (343)
T ss_pred ccCcceeE--eecccccccceEEEccCCCeeeecCCC-----ceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEE
Confidence 55543221 22222222222222 45556655433 356778887765433322222233443333 368888
Q ss_pred EEeCCCCCCCCCeEEEEeCCC
Q psy10286 701 AIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 701 v~GG~~~~~~~~~v~~yd~~~ 721 (748)
..|..+. .+.++|.-+
T Consensus 289 fagy~d~-----~c~vWDtlk 304 (343)
T KOG0286|consen 289 FAGYDDF-----TCNVWDTLK 304 (343)
T ss_pred EeeecCC-----ceeEeeccc
Confidence 8885332 355555443
No 216
>KOG3545|consensus
Probab=56.66 E-value=2.1e+02 Score=28.29 Aligned_cols=198 Identities=16% Similarity=0.249 Sum_probs=110.5
Q ss_pred EEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEEC----CCCeEEEccCCCCCcceeEEEEE
Q psy10286 479 VEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDP----VRRVWNKVSPMCFKRSAVGAAAL 554 (748)
Q Consensus 479 ~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~----~t~~W~~~~~~~~~r~~~~~~~~ 554 (748)
+.......+.|.+=+ +| + ++++|+..+..+ ..+..|.. ....|...-.+|.+-.+.+-+++
T Consensus 12 ~~~~~~~~GsWmrDp-l~--~--------~~r~~~~~~~~~----~~l~E~~~~~~~~~~~~~~~~~lp~~~~gTg~VVy 76 (249)
T KOG3545|consen 12 VKTAGPRFGAWMRDP-LP--A--------DDRIYVMNYFDG----LMLTEYTNLEDFKRGRKAEKYRLPYSWDGTGHVVY 76 (249)
T ss_pred EEeeccccceeecCC-Cc--c--------cCceEEeccccC----ceEEEeccHHHhhccCcceEEeCCCCccccceEEE
Confidence 444555567775422 11 1 678888844332 34455544 34456666678888888899999
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCe---EEEccCCCC------C---CcceEEEEECCEEEEEccCCCCcccCeEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQ---WRIVKSMQK------H---RSAGGVIAFDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~---W~~~~~~~~------~---r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
+|.+|.-.+ ....+-+||..+.. |..++.+.. . ....-.++...-++++=-..+....-.+-+
T Consensus 77 nGs~yynk~-----~t~~ivky~l~~~~~~~~~~lp~a~y~~~~~y~~~g~sdiD~avDE~GLWviYat~~~~g~iv~sk 151 (249)
T KOG3545|consen 77 NGSLYYNKA-----GTRNIIKYDLETRTVAGSAALPYAGYHNPSPYYWGGHSDIDLAVDENGLWVIYATPENAGTIVLSK 151 (249)
T ss_pred cceEEeecc-----CCcceEEEEeecceeeeeeeccccccCCCcccccCCCccccceecccceeEEecccccCCcEEeec
Confidence 999887654 34678889888743 444443211 1 111223444444555443322222223467
Q ss_pred EECCC----CcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEE-EEEeCCCCcEEEccCCCCC--CcceEEEEE
Q psy10286 623 YDPKT----DEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSV-EMYDPITDEWKMIASMNVM--RSRVALVAN 695 (748)
Q Consensus 623 yd~~~----~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v-~~yd~~~~~W~~~~~~p~~--r~~~~~~~~ 695 (748)
.||.+ .+|..- -.+|....+.++=|.+|++-..+... ..| +.||..+++=..+ .+|.+ -...+++-+
T Consensus 152 Ldp~tl~~e~tW~T~---~~k~~~~~aF~iCGvLY~v~S~~~~~--~~i~yaydt~~~~~~~~-~ipf~N~y~~~~~idY 225 (249)
T KOG3545|consen 152 LDPETLEVERTWNTT---LPKRSAGNAFMICGVLYVVHSYNCTH--TQISYAYDTTTGTQERI-DLPFPNPYSYATMIDY 225 (249)
T ss_pred cCHHHhheeeeeccc---cCCCCcCceEEEeeeeEEEeccccCC--ceEEEEEEcCCCceecc-cccccchhhhhhccCC
Confidence 77743 345321 12344455666678889887655432 224 7899988776443 33333 233444433
Q ss_pred ---CCEEEEE
Q psy10286 696 ---MGKLWAI 702 (748)
Q Consensus 696 ---~~~l~v~ 702 (748)
+.+||++
T Consensus 226 NP~D~~LY~w 235 (249)
T KOG3545|consen 226 NPRDRRLYAW 235 (249)
T ss_pred CcccceeeEe
Confidence 5788888
No 217
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=56.17 E-value=11 Score=29.90 Aligned_cols=35 Identities=14% Similarity=0.455 Sum_probs=27.5
Q ss_pred ecccHHHHHHHhhhcCcHHHHHHHHHHHhhcCCCC
Q psy10286 238 HSQNVQSLMVVASFLQMQKVADACADFLKKRFHPN 272 (748)
Q Consensus 238 ~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~l~~~ 272 (748)
....+.+|+.+|++++++.|.+.|+..+...+.-.
T Consensus 12 ~~~~L~~l~~AA~yL~I~~L~~~~~~~iA~~i~gk 46 (78)
T PF01466_consen 12 DNDELFDLLNAANYLDIKGLLDLCCKYIANMIKGK 46 (78)
T ss_dssp -HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhcCC
Confidence 44567899999999999999999999988655443
No 218
>KOG0266|consensus
Probab=56.13 E-value=3.2e+02 Score=30.19 Aligned_cols=188 Identities=17% Similarity=0.193 Sum_probs=93.1
Q ss_pred ecccccccCCCccceEEEEeCCCC-c-eEEccCCCcccceeEEEEE-CCEEEEEccCCCCCCCCeEEEEECCCCeEEEcc
Q psy10286 464 STKSCLTKAGDSLSTVEVFDPLVG-R-WQMAEAMSMLRSRVGVAVM-KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVS 540 (748)
Q Consensus 464 ~~~~~~~~~g~~~~~~~~yd~~~~-~-W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~ 540 (748)
..++.....+..-..+..+|...+ . -+.+....... ++++.. .+.+++.|+.+ ..+..+|..+.+-...=
T Consensus 212 s~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v--~~~~f~p~g~~i~Sgs~D-----~tvriWd~~~~~~~~~l 284 (456)
T KOG0266|consen 212 SPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYV--TSVAFSPDGNLLVSGSDD-----GTVRIWDVRTGECVRKL 284 (456)
T ss_pred CCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCce--EEEEecCCCCEEEEecCC-----CcEEEEeccCCeEEEee
Confidence 334433333344457888888433 2 23333333333 333333 55888888865 46888898885433322
Q ss_pred CCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEE---EccCCCCCCcceEEEEECCEEEEEccCCCCccc
Q psy10286 541 PMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWR---IVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIF 617 (748)
Q Consensus 541 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~---~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~ 617 (748)
......-...+..-++..++.|..+ ..+.+||..+..-. .+.....+..-..+....+..|++.+..+
T Consensus 285 ~~hs~~is~~~f~~d~~~l~s~s~d-----~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d---- 355 (456)
T KOG0266|consen 285 KGHSDGISGLAFSPDGNLLVSASYD-----GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLD---- 355 (456)
T ss_pred eccCCceEEEEECCCCCEEEEcCCC-----ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCC----
Confidence 2122211112222367777777654 46788998877743 22222222211222222444444444422
Q ss_pred CeEEEEECCCCc----EEEccCCCCCCcceeEEEE-CCEEEEEeccCCCccccEEEEEeCCC
Q psy10286 618 DSVERYDPKTDE----WTSVKPMLTKRCRLGVAAL-NNKIYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 618 ~~~~~yd~~~~~----W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
+.+-.+|..... |...... .+.....+.. +++..+.|+.+ ..|+.+|+.+
T Consensus 356 ~~~~~w~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~sg~~d-----~~v~~~~~~s 410 (456)
T KOG0266|consen 356 RTLKLWDLRSGKSVGTYTGHSNL--VRCIFSPTLSTGGKLIYSGSED-----GSVYVWDSSS 410 (456)
T ss_pred CeEEEEEccCCcceeeecccCCc--ceeEecccccCCCCeEEEEeCC-----ceEEEEeCCc
Confidence 234455554332 2222111 1344444433 56666666543 5788999887
No 219
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=54.67 E-value=1.7e+02 Score=31.86 Aligned_cols=149 Identities=9% Similarity=0.033 Sum_probs=74.5
Q ss_pred ceEEEEeCCCCeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC
Q psy10286 571 NTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN 650 (748)
Q Consensus 571 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~ 650 (748)
..++.+|..++.=..+...+..-..++- .-+|+-++|-...+ -..++|.+|..+.+=.++...+..-...+...-+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~P~f-spDG~~l~f~~~rd--g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGAPAF-SPDGSKLAFSSSRD--GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCCccC-CCCCCEEEEEECCC--CCccEEEEcCCCCcceecccCCccccCccCCCCCC
Confidence 4566666666655444432221111111 22333333333222 13589999998887444333222222222223344
Q ss_pred EEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc-eEecC
Q psy10286 651 KIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS-WAFVA 728 (748)
Q Consensus 651 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~ 728 (748)
+|+..-...+ ..+|+.||++...=+.+..-..... +-...-+|+.++|-+..+. . -++..+|+.++. |+.+.
T Consensus 295 ~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g-~-~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 295 KIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGG-Q-WDIDKNDLASGGKIRILT 367 (425)
T ss_pred EEEEEeCCCC---CcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCC-c-eeeEEeccCCCCcEEEcc
Confidence 5555533333 2489999998877666533222222 2223335555555443322 1 568889888877 87653
No 220
>KOG0649|consensus
Probab=52.90 E-value=2.4e+02 Score=27.78 Aligned_cols=128 Identities=17% Similarity=0.255 Sum_probs=69.2
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
.|.|+..||- ..+++.|.++++.+..-. ...-+-|+++.- ++.| +-||.+| .+-.+|.+|.+-.+
T Consensus 126 enSi~~AgGD------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qi-lsG~EDG-----tvRvWd~kt~k~v~ 192 (325)
T KOG0649|consen 126 ENSILFAGGD------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQI-LSGAEDG-----TVRVWDTKTQKHVS 192 (325)
T ss_pred CCcEEEecCC------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCcce-eecCCCc-----cEEEEeccccceeE
Confidence 5778888873 367889999998765521 122344555543 2333 3455554 46677888776554
Q ss_pred c-cC-----CCC--CCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEe
Q psy10286 633 V-KP-----MLT--KRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIG 703 (748)
Q Consensus 633 ~-~~-----~p~--~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~G 703 (748)
+ .+ ... -....++...+..-.|.||- ...-.++..+.+=+.+ .|.+-.-+-+..+++.+++.|
T Consensus 193 ~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLrsse~t~v--fpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 193 MIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLRSSESTCV--FPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred EeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEeccCCCceEE--EecccceeEeeeecceEEEec
Confidence 3 21 112 12234566666666666662 2333455544443333 333333455556667666666
No 221
>PRK02888 nitrous-oxide reductase; Validated
Probab=51.99 E-value=3.8e+02 Score=30.64 Aligned_cols=178 Identities=13% Similarity=0.123 Sum_probs=88.3
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCC--------C------CCCCceEEEEeCCCCe--EEE
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYD--------G------VSSLNTVECYEPDKDQ--WRI 585 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~--------~------~~~~~~~~~yd~~~~~--W~~ 585 (748)
..+-+.+...-+-.++-.+|.....|++... .+.=||+.+.. + ..+.+-+-..|.++.+ |+.
T Consensus 152 ~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV 231 (635)
T PRK02888 152 TRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQV 231 (635)
T ss_pred cceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEEEEECccceEEEEE
Confidence 4455566655555556566666677777665 45666665532 1 1112333344554432 433
Q ss_pred ccCCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccc
Q psy10286 586 VKSMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFL 664 (748)
Q Consensus 586 ~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~ 664 (748)
.-+ .+.....+..+| .+|+.. ++... -..+...+..+..|...-...... .++.-+...++ +|
T Consensus 232 ~Vd---gnpd~v~~spdGk~afvTs-yNsE~-G~tl~em~a~e~d~~vvfni~~ie---a~vkdGK~~~V-~g------- 295 (635)
T PRK02888 232 MVD---GNLDNVDTDYDGKYAFSTC-YNSEE-GVTLAEMMAAERDWVVVFNIARIE---EAVKAGKFKTI-GG------- 295 (635)
T ss_pred EeC---CCcccceECCCCCEEEEec-cCccc-CcceeeeccccCceEEEEchHHHH---HhhhCCCEEEE-CC-------
Confidence 221 122333333343 444432 21110 113333433333343321111100 11111233443 33
Q ss_pred cEEEEEeCCC---CcEEEccCCCCCCcceEEEEE--CCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 665 QSVEMYDPIT---DEWKMIASMNVMRSRVALVAN--MGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 665 ~~v~~yd~~~---~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
+.|-+.|..+ ..+..+..+|.+++-|++.+. +..+|+-|+. .++|-++|.++.
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVankl-----S~tVSVIDv~k~ 353 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKL-----SPTVTVIDVRKL 353 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCC-----CCcEEEEEChhh
Confidence 5788899876 246667778888888887765 4556666663 357888888773
No 222
>KOG0278|consensus
Probab=51.11 E-value=2.6e+02 Score=27.66 Aligned_cols=124 Identities=14% Similarity=0.112 Sum_probs=62.2
Q ss_pred CCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEEC
Q psy10286 523 LSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFD 602 (748)
Q Consensus 523 ~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 602 (748)
..+|..+|..|++=..-=.++.+.... =+..+|+|..+.- -.++-.+|+.+-.--+--.||.....++.- -+
T Consensus 164 d~tVRLWD~rTgt~v~sL~~~s~VtSl-Evs~dG~ilTia~------gssV~Fwdaksf~~lKs~k~P~nV~SASL~-P~ 235 (334)
T KOG0278|consen 164 DKTVRLWDHRTGTEVQSLEFNSPVTSL-EVSQDGRILTIAY------GSSVKFWDAKSFGLLKSYKMPCNVESASLH-PK 235 (334)
T ss_pred CCceEEEEeccCcEEEEEecCCCCcce-eeccCCCEEEEec------CceeEEeccccccceeeccCcccccccccc-CC
Confidence 456788888887643322222222211 1122666655521 135556666543322222344333222221 14
Q ss_pred CEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcc--eeEE-EECCEEEEEeccCCC
Q psy10286 603 SYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCR--LGVA-ALNNKIYVCGGYDGA 661 (748)
Q Consensus 603 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~--~~~~-~~~~~i~v~GG~~~~ 661 (748)
..+||.||.+. .+++||-.|+.=... ......+ |++- .-+|.+|..|..++.
T Consensus 236 k~~fVaGged~-----~~~kfDy~TgeEi~~--~nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 236 KEFFVAGGEDF-----KVYKFDYNTGEEIGS--YNKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred CceEEecCcce-----EEEEEeccCCceeee--cccCCCCceEEEEECCCCceeeccCCCce
Confidence 58999999743 578888877753222 1111111 2211 228999999976653
No 223
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=50.92 E-value=1.9e+02 Score=27.84 Aligned_cols=108 Identities=17% Similarity=0.300 Sum_probs=72.4
Q ss_pred EEEEECCEEEEEeCCCCCCCCceEEEEeCCCCe--EEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 550 GAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQ--WRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 550 ~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~--W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
+....+|+||..-|.-+. +.+.++|..+.+ |+.--+ |..-++-+.+..++.+|..--.++ ..+.||+.+
T Consensus 50 GL~~~~g~i~esTG~yg~---S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~eg-----vaf~~d~~t 120 (262)
T COG3823 50 GLEYLDGHILESTGLYGF---SKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEG-----VAFKYDADT 120 (262)
T ss_pred ceeeeCCEEEEecccccc---ceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccc-----eeEEEChHH
Confidence 555668888887775543 578889988665 443322 334566678888999999876533 356777654
Q ss_pred CcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCC
Q psy10286 628 DEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 628 ~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
.+.+...+.+..+.+.+.-+..++.-.|. ..+..-||++
T Consensus 121 --~~~lg~~~y~GeGWgLt~d~~~LimsdGs------atL~frdP~t 159 (262)
T COG3823 121 --LEELGRFSYEGEGWGLTSDDKNLIMSDGS------ATLQFRDPKT 159 (262)
T ss_pred --hhhhcccccCCcceeeecCCcceEeeCCc------eEEEecCHHH
Confidence 44666677777788888887777776662 3455556654
No 224
>PRK01029 tolB translocation protein TolB; Provisional
Probab=50.55 E-value=3.7e+02 Score=29.35 Aligned_cols=191 Identities=9% Similarity=-0.013 Sum_probs=89.1
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEE--EeCCCCeE---EEccCCCCCCcceE
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVEC--YEPDKDQW---RIVKSMQKHRSAGG 597 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~--yd~~~~~W---~~~~~~~~~r~~~~ 597 (748)
..+|.+|..+++-..+...+...... ...-|| +|.......+. .+++. ||..++.. ..+..-........
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g~~~~p-~wSPDG~~Laf~s~~~g~---~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p 286 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQGNQLMP-TFSPRKKLLAFISDRYGN---PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNP 286 (428)
T ss_pred ceEEEEECCCCCceEeecCCCCccce-EECCCCCEEEEEECCCCC---cceeEEEeecccCCCCcceEeecCCCCCcCCe
Confidence 57999999988777776654433222 122244 55444322221 12333 45443211 11111111111111
Q ss_pred EEEECCE-EEEEccCCCCcccCeEEEEECCCC-c-EEEccCCCCCCcceeEEEECC-EEEEEeccCCCccccEEEEEeCC
Q psy10286 598 VIAFDSY-VYALGGHDGLSIFDSVERYDPKTD-E-WTSVKPMLTKRCRLGVAALNN-KIYVCGGYDGAIFLQSVEMYDPI 673 (748)
Q Consensus 598 ~~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd~~ 673 (748)
...-+|+ |+.....++ ...+|.++.... . =..+.... .....-...-+| +|+..+..++ ..++++||+.
T Consensus 287 ~wSPDG~~Laf~s~~~g---~~~ly~~~~~~~g~~~~~lt~~~-~~~~~p~wSPDG~~Laf~~~~~g---~~~I~v~dl~ 359 (428)
T PRK01029 287 SFSPDGTRLVFVSNKDG---RPRIYIMQIDPEGQSPRLLTKKY-RNSSCPAWSPDGKKIAFCSVIKG---VRQICVYDLA 359 (428)
T ss_pred EECCCCCEEEEEECCCC---CceEEEEECcccccceEEeccCC-CCccceeECCCCCEEEEEEcCCC---CcEEEEEECC
Confidence 2222454 554433322 236788776432 1 12222111 111111112244 4555543322 3589999999
Q ss_pred CCcEEEccCCCCCCcceEEEEECCE-EEEEeCCCCCCCCCeEEEEeCCCCceEecCC
Q psy10286 674 TDEWKMIASMNVMRSRVALVANMGK-LWAIGGYDGVSNLPTVEVYDPSTDSWAFVAP 729 (748)
Q Consensus 674 ~~~W~~~~~~p~~r~~~~~~~~~~~-l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 729 (748)
+.+.+.+...+..-.... ..-+++ |++.....+ ...++.+|..++..+.+..
T Consensus 360 ~g~~~~Lt~~~~~~~~p~-wSpDG~~L~f~~~~~g---~~~L~~vdl~~g~~~~Lt~ 412 (428)
T PRK01029 360 TGRDYQLTTSPENKESPS-WAIDSLHLVYSAGNSN---ESELYLISLITKKTRKIVI 412 (428)
T ss_pred CCCeEEccCCCCCccceE-ECCCCCEEEEEECCCC---CceEEEEECCCCCEEEeec
Confidence 999888754321111111 222454 444443222 2579999999998887754
No 225
>KOG0318|consensus
Probab=50.50 E-value=3.8e+02 Score=29.48 Aligned_cols=105 Identities=24% Similarity=0.315 Sum_probs=60.1
Q ss_pred ECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCCCcEE
Q psy10286 601 FDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPITDEWK 678 (748)
Q Consensus 601 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~ 678 (748)
-++.-.++||.++ .++.|....+.-.........|...+.+.+ ++..++.|-.+ ..+..||..+++=
T Consensus 453 ~~~~~vaVGG~Dg-----kvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~-----rkvv~yd~~s~~~- 521 (603)
T KOG0318|consen 453 PDGSEVAVGGQDG-----KVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDAS-----RKVVLYDVASREV- 521 (603)
T ss_pred CCCCEEEEecccc-----eEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccC-----CcEEEEEcccCce-
Confidence 3778899999865 488888877664444444455555566655 56666666432 4567777765443
Q ss_pred EccCC--CCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 679 MIASM--NVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 679 ~~~~~--p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
....+ ..+|-.+-+-.-+++++..|+.+ ..|.+|+.++
T Consensus 522 ~~~~w~FHtakI~~~aWsP~n~~vATGSlD-----t~Viiysv~k 561 (603)
T KOG0318|consen 522 KTNRWAFHTAKINCVAWSPNNKLVATGSLD-----TNVIIYSVKK 561 (603)
T ss_pred ecceeeeeeeeEEEEEeCCCceEEEecccc-----ceEEEEEccC
Confidence 11111 12222222222267777777654 3577776544
No 226
>KOG0305|consensus
Probab=49.40 E-value=4e+02 Score=29.44 Aligned_cols=204 Identities=16% Similarity=0.196 Sum_probs=99.9
Q ss_pred CCccceEEEEeCCCCceEEccCCCc-ccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeE
Q psy10286 473 GDSLSTVEVFDPLVGRWQMAEAMSM-LRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVG 550 (748)
Q Consensus 473 g~~~~~~~~yd~~~~~W~~~~~~~~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~ 550 (748)
|.....+..||..+.+= +..+.. .....++...++.+...|+.++ .+..+|....+=.. ..+. ....-++
T Consensus 235 G~~~g~v~iwD~~~~k~--~~~~~~~h~~rvg~laW~~~~lssGsr~~-----~I~~~dvR~~~~~~-~~~~~H~qeVCg 306 (484)
T KOG0305|consen 235 GTSDGTVQIWDVKEQKK--TRTLRGSHASRVGSLAWNSSVLSSGSRDG-----KILNHDVRISQHVV-STLQGHRQEVCG 306 (484)
T ss_pred eecCCeEEEEehhhccc--cccccCCcCceeEEEeccCceEEEecCCC-----cEEEEEEecchhhh-hhhhcccceeee
Confidence 34445788888776542 222322 2233445555788888887653 34555554332100 0011 1111122
Q ss_pred EEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEE-------ECCEEEEEccCCCCcccCeEEE
Q psy10286 551 AAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIA-------FDSYVYALGGHDGLSIFDSVER 622 (748)
Q Consensus 551 ~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~-------~~~~iyv~GG~~~~~~~~~~~~ 622 (748)
.... ++...+.||.+ +.+.+||..+.. .+.....|.+++ +...|.+.||...+ ..+..
T Consensus 307 Lkws~d~~~lASGgnD-----N~~~Iwd~~~~~------p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D---~~i~f 372 (484)
T KOG0305|consen 307 LKWSPDGNQLASGGND-----NVVFIWDGLSPE------PKFTFTEHTAAVKALAWCPWQSGLLATGGGSAD---RCIKF 372 (484)
T ss_pred eEECCCCCeeccCCCc-----cceEeccCCCcc------ccEEEeccceeeeEeeeCCCccCceEEcCCCcc---cEEEE
Confidence 2222 56677777754 567778762222 112233344444 26678888886443 24666
Q ss_pred EECCCCcEEEccCCCCCCcceeEEEE---CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCC--CCCcceEEEEECC
Q psy10286 623 YDPKTDEWTSVKPMLTKRCRLGVAAL---NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMN--VMRSRVALVANMG 697 (748)
Q Consensus 623 yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p--~~r~~~~~~~~~~ 697 (748)
+|+.++.=.. . .......+...+ .+.|...-|+.. ++|.+|+-.+. ..+..+. ..|..|.+..-++
T Consensus 373 wn~~~g~~i~--~-vdtgsQVcsL~Wsk~~kEi~sthG~s~----n~i~lw~~ps~--~~~~~l~gH~~RVl~la~SPdg 443 (484)
T KOG0305|consen 373 WNTNTGARID--S-VDTGSQVCSLIWSKKYKELLSTHGYSE----NQITLWKYPSM--KLVAELLGHTSRVLYLALSPDG 443 (484)
T ss_pred EEcCCCcEec--c-cccCCceeeEEEcCCCCEEEEecCCCC----CcEEEEecccc--ceeeeecCCcceeEEEEECCCC
Confidence 7766543211 1 112222222222 345777777654 35555554441 2222222 2344455555577
Q ss_pred EEEEEeCCCC
Q psy10286 698 KLWAIGGYDG 707 (748)
Q Consensus 698 ~l~v~GG~~~ 707 (748)
.-++.|+.++
T Consensus 444 ~~i~t~a~DE 453 (484)
T KOG0305|consen 444 ETIVTGAADE 453 (484)
T ss_pred CEEEEecccC
Confidence 7777776554
No 227
>KOG0291|consensus
Probab=49.15 E-value=4.8e+02 Score=30.21 Aligned_cols=151 Identities=17% Similarity=0.178 Sum_probs=81.6
Q ss_pred CEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccC
Q psy10286 509 NRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKS 588 (748)
Q Consensus 509 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 588 (748)
|.=..+|+. .+..+-+|+-.+++......-...|-...+..-||.+.+.|+.++ .|-+||..+...-. .
T Consensus 319 GDWiA~g~~----klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~v--T 387 (893)
T KOG0291|consen 319 GDWIAFGCS----KLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-----KVKVWNTQSGFCFV--T 387 (893)
T ss_pred CCEEEEcCC----ccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC-----cEEEEeccCceEEE--E
Confidence 555566653 245666776555544333332333333333334889999998663 56677765543211 1
Q ss_pred CCCCCcceEEEEE--CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEEC--CEEEEEeccCCCccc
Q psy10286 589 MQKHRSAGGVIAF--DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALN--NKIYVCGGYDGAIFL 664 (748)
Q Consensus 589 ~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~--~~i~v~GG~~~~~~~ 664 (748)
...+-.+++++.+ .++..+....+| .|-.+|....+=-+-=..|. |..++++.++ |.|++.|+.+ .
T Consensus 388 FteHts~Vt~v~f~~~g~~llssSLDG-----tVRAwDlkRYrNfRTft~P~-p~QfscvavD~sGelV~AG~~d----~ 457 (893)
T KOG0291|consen 388 FTEHTSGVTAVQFTARGNVLLSSSLDG-----TVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAGAQD----S 457 (893)
T ss_pred eccCCCceEEEEEEecCCEEEEeecCC-----eEEeeeecccceeeeecCCC-ceeeeEEEEcCCCCEEEeeccc----e
Confidence 2223333444433 555555555544 34555554432211112333 4445666666 8899999865 3
Q ss_pred cEEEEEeCCCCcEEEc
Q psy10286 665 QSVEMYDPITDEWKMI 680 (748)
Q Consensus 665 ~~v~~yd~~~~~W~~~ 680 (748)
-+|++++.++++-..+
T Consensus 458 F~IfvWS~qTGqllDi 473 (893)
T KOG0291|consen 458 FEIFVWSVQTGQLLDI 473 (893)
T ss_pred EEEEEEEeecCeeeeh
Confidence 4788888888776554
No 228
>PRK01029 tolB translocation protein TolB; Provisional
Probab=49.10 E-value=3.9e+02 Score=29.18 Aligned_cols=190 Identities=12% Similarity=0.020 Sum_probs=88.0
Q ss_pred ceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEE--EECCCC---eEEEccCCCCCcceeEE
Q psy10286 477 STVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEE--FDPVRR---VWNKVSPMCFKRSAVGA 551 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~--yd~~t~---~W~~~~~~~~~r~~~~~ 551 (748)
.++|.++..+++-.++...+......+..--+.+|.......+. .+++. ||..+. .=..+..-..+....-.
T Consensus 211 ~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~---~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~ 287 (428)
T PRK01029 211 PKIFLGSLENPAGKKILALQGNQLMPTFSPRKKLLAFISDRYGN---PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPS 287 (428)
T ss_pred ceEEEEECCCCCceEeecCCCCccceEECCCCCEEEEEECCCCC---cceeEEEeecccCCCCcceEeecCCCCCcCCeE
Confidence 57999999988877777655433322222223355444322111 12333 454432 11112111111111112
Q ss_pred EEECCE-EEEEeCCCCCCCCceEEEEeCCCC-e-EEEccCCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCC
Q psy10286 552 AALNDK-LYVCGGYDGVSSLNTVECYEPDKD-Q-WRIVKSMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 552 ~~~~~~-iyv~GG~~~~~~~~~~~~yd~~~~-~-W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
..-||+ |+.....++ ...++.++.... . =+.+.... .........-+| +|+..+..++ ...++.||+.+
T Consensus 288 wSPDG~~Laf~s~~~g---~~~ly~~~~~~~g~~~~~lt~~~-~~~~~p~wSPDG~~Laf~~~~~g---~~~I~v~dl~~ 360 (428)
T PRK01029 288 FSPDGTRLVFVSNKDG---RPRIYIMQIDPEGQSPRLLTKKY-RNSSCPAWSPDGKKIAFCSVIKG---VRQICVYDLAT 360 (428)
T ss_pred ECCCCCEEEEEECCCC---CceEEEEECcccccceEEeccCC-CCccceeECCCCCEEEEEEcCCC---CcEEEEEECCC
Confidence 223554 444433222 235777765421 1 11222111 111111112244 4555443322 35799999999
Q ss_pred CcEEEccCCCCCCcceeEE-EECCE-EEEEeccCCCccccEEEEEeCCCCcEEEcc
Q psy10286 628 DEWTSVKPMLTKRCRLGVA-ALNNK-IYVCGGYDGAIFLQSVEMYDPITDEWKMIA 681 (748)
Q Consensus 628 ~~W~~~~~~p~~r~~~~~~-~~~~~-i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (748)
++.+.+...+. ...... .-+++ |++.....+ ...++.+|..+.+...+.
T Consensus 361 g~~~~Lt~~~~--~~~~p~wSpDG~~L~f~~~~~g---~~~L~~vdl~~g~~~~Lt 411 (428)
T PRK01029 361 GRDYQLTTSPE--NKESPSWAIDSLHLVYSAGNSN---ESELYLISLITKKTRKIV 411 (428)
T ss_pred CCeEEccCCCC--CccceEECCCCCEEEEEECCCC---CceEEEEECCCCCEEEee
Confidence 99887754321 111122 22444 544443222 357999999888887764
No 229
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=48.47 E-value=14 Score=30.42 Aligned_cols=43 Identities=19% Similarity=0.453 Sum_probs=30.3
Q ss_pred hhhHHHHHHHhhcc-eeEEEe-cccHHHHHHHhhhcCcHHH-HHHH
Q psy10286 219 SCRAMEALINFAYS-GRVTIH-SQNVQSLMVVASFLQMQKV-ADAC 261 (748)
Q Consensus 219 ~~~~~~~ll~~~y~-~~~~~~-~~~~~~l~~~a~~~~l~~l-~~~c 261 (748)
+...|+.+++|+.+ +.+... ......+++.|++|+++.+ .+.|
T Consensus 49 dp~~F~~IL~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~l~i~~c 94 (94)
T PF02214_consen 49 DPELFEYILNYLRTGGKLPIPDEICLEELLEEAEFYGLDELFIEDC 94 (94)
T ss_dssp -HHHHHHHHHHHHHTSSB---TTS-HHHHHHHHHHHT-HHHHBHHC
T ss_pred ChhhhhHHHHHHhhcCccCCCCchhHHHHHHHHHHcCCCccccCCC
Confidence 56778889999999 677764 6678899999999999876 5444
No 230
>KOG1778|consensus
Probab=47.93 E-value=6.5 Score=40.39 Aligned_cols=92 Identities=17% Similarity=0.312 Sum_probs=56.6
Q ss_pred cEEEEECCeEEeeeeeeeeccCHHHHHhhcccccccccceeeeecchheehhhccccccccccccccccccceeeeecCC
Q psy10286 76 DVTIKVDDQSFTCHRIVLAATIPYFQAMFTSDMAESKQREITMQGIDAVIVLAATIPYFQAMFTSDMAESKQREITMQGI 155 (748)
Q Consensus 76 Dv~i~~~~~~~~aHk~iL~a~S~~F~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 155 (748)
|.++......+.+|+.+|+..|+.|..+.... ... .....+.+-.+
T Consensus 28 ~~~~~~~~~~~~~~s~~l~~~~~~~~~~~~~~-~~~---------------------------------~~~~~~~~~~~ 73 (319)
T KOG1778|consen 28 VEIVTDVKDLIPAHSLVLGPASPVFKKVLKQP-CRK---------------------------------SLVKGNKILGV 73 (319)
T ss_pred hhhhhhhhhhhHHHHhcccccchHHHHHHhhh-cch---------------------------------hhhhcceeecc
Confidence 33444456789999999999999999877654 111 01122334678
Q ss_pred CHHHHHHHHHhhhceeEEeechh--HHHHHHHHHHhcchhHHHHHHHHh
Q psy10286 156 DAVAMEALINFVYSGRVTIHSQN--VQSLMVVASFLQMQKVADACADFL 202 (748)
Q Consensus 156 ~~~~~~~~l~flYtg~~~i~~~~--v~~ll~~A~~l~i~~l~~~c~~~l 202 (748)
+...+..+..++|.+ +...+.+ ...++.+...+-++.++..|..-+
T Consensus 74 ~c~~~~~~~~~l~~~-~ek~e~~~~~ihll~~~~~~~v~~~~~d~~~~~ 121 (319)
T KOG1778|consen 74 PCKAVNVFIRFLYSS-LEKHEMVFFDIHLLALSHVYVVPQPKADCDPIL 121 (319)
T ss_pred cccccchhhhhhccc-hhhhHHHHHHHHHHhhhhhhhccCccccCCccc
Confidence 889999999999988 3332222 333444444555555555544433
No 231
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=47.58 E-value=5.5e+02 Score=30.49 Aligned_cols=34 Identities=15% Similarity=0.161 Sum_probs=22.5
Q ss_pred eEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe--EEEccC
Q psy10286 502 VGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV--WNKVSP 541 (748)
Q Consensus 502 ~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~--W~~~~~ 541 (748)
.+-+++++.||+.... +.++.+|..|.+ |+.-+.
T Consensus 188 ~TPlvvgg~lYv~t~~------~~V~ALDa~TGk~lW~~d~~ 223 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH------NKVIALDAATGKEKWKFDPK 223 (764)
T ss_pred cCCEEECCEEEEECCC------CeEEEEECCCCcEEEEEcCC
Confidence 3446679999997542 467777877654 765443
No 232
>KOG0291|consensus
Probab=47.04 E-value=5.1e+02 Score=29.98 Aligned_cols=140 Identities=15% Similarity=0.183 Sum_probs=72.3
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL- 554 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~- 554 (748)
+..+..|+-++++..--..-..+|.......-+|.+.+.||.++ .|-+||..+.--. -.....-++++++.+
T Consensus 329 lgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDg-----KVKvWn~~SgfC~--vTFteHts~Vt~v~f~ 401 (893)
T KOG0291|consen 329 LGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDG-----KVKVWNTQSGFCF--VTFTEHTSGVTAVQFT 401 (893)
T ss_pred cceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCC-----cEEEEeccCceEE--EEeccCCCceEEEEEE
Confidence 44566666555554322222223332222333888999998654 4677776654321 111222334444433
Q ss_pred -CCEEEEEeCCCCCCCCceEEEEeCCCCe-EEEccCCCCCCcceEEEEEC--CEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 555 -NDKLYVCGGYDGVSSLNTVECYEPDKDQ-WRIVKSMQKHRSAGGVIAFD--SYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 555 -~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~~~~r~~~~~~~~~--~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
.|+..+....+| .|-.||..... ++.. ..| .|..++++..+ |.|.+.|+.+. -++++++.+|++-
T Consensus 402 ~~g~~llssSLDG-----tVRAwDlkRYrNfRTf-t~P-~p~QfscvavD~sGelV~AG~~d~----F~IfvWS~qTGql 470 (893)
T KOG0291|consen 402 ARGNVLLSSSLDG-----TVRAWDLKRYRNFRTF-TSP-EPIQFSCVAVDPSGELVCAGAQDS----FEIFVWSVQTGQL 470 (893)
T ss_pred ecCCEEEEeecCC-----eEEeeeecccceeeee-cCC-CceeeeEEEEcCCCCEEEeeccce----EEEEEEEeecCee
Confidence 555555544443 34444543322 1111 122 24455666665 88999988753 3677888888765
Q ss_pred EEc
Q psy10286 631 TSV 633 (748)
Q Consensus 631 ~~~ 633 (748)
-.+
T Consensus 471 lDi 473 (893)
T KOG0291|consen 471 LDI 473 (893)
T ss_pred eeh
Confidence 443
No 233
>KOG0265|consensus
Probab=45.60 E-value=3.5e+02 Score=27.57 Aligned_cols=131 Identities=15% Similarity=0.308 Sum_probs=67.6
Q ss_pred CCEEEEEccCCCCCCCCeEEE-EECCCCeEEEccCCCCCcceeEEEEE------CCEEEEEeCCCCCCCCceEEEEeCCC
Q psy10286 508 KNRLYAFGGYNGSERLSTVEE-FDPVRRVWNKVSPMCFKRSAVGAAAL------NDKLYVCGGYDGVSSLNTVECYEPDK 580 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~-yd~~t~~W~~~~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~yd~~~ 580 (748)
+|..++.||.+.. --+|. |+-..|.|... +|+.++. ++...+..|.+ +.+..||.++
T Consensus 58 ~gs~~aSgG~Dr~---I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD-----k~v~~wD~~t 121 (338)
T KOG0265|consen 58 DGSCFASGGSDRA---IVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD-----KTVRGWDAET 121 (338)
T ss_pred CCCeEeecCCcce---EEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC-----ceEEEEeccc
Confidence 6778888886532 12343 55667778664 4555554 33333444433 6788899888
Q ss_pred CeEEEc--------cCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC--
Q psy10286 581 DQWRIV--------KSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN-- 650 (748)
Q Consensus 581 ~~W~~~--------~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-- 650 (748)
++-... ..+++.|. |...|.-|.++ ..+-.||..+..-. ..+...+...++.+++
T Consensus 122 G~~~rk~k~h~~~vNs~~p~rr--------g~~lv~SgsdD----~t~kl~D~R~k~~~---~t~~~kyqltAv~f~d~s 186 (338)
T KOG0265|consen 122 GKRIRKHKGHTSFVNSLDPSRR--------GPQLVCSGSDD----GTLKLWDIRKKEAI---KTFENKYQLTAVGFKDTS 186 (338)
T ss_pred ceeeehhccccceeeecCcccc--------CCeEEEecCCC----ceEEEEeecccchh---hccccceeEEEEEecccc
Confidence 774322 12222222 23334444432 24667777654322 2233345555665532
Q ss_pred EEEEEeccCCCccccEEEEEeCCC
Q psy10286 651 KIYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 651 ~i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
.=.+.||.+ +++.++|+..
T Consensus 187 ~qv~sggId-----n~ikvWd~r~ 205 (338)
T KOG0265|consen 187 DQVISGGID-----NDIKVWDLRK 205 (338)
T ss_pred cceeecccc-----Cceeeecccc
Confidence 345567765 3455555533
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=43.52 E-value=2.8e+02 Score=26.33 Aligned_cols=110 Identities=13% Similarity=0.074 Sum_probs=54.6
Q ss_pred CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEcc
Q psy10286 602 DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIA 681 (748)
Q Consensus 602 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~ 681 (748)
++++.++-|... ..+..||.+. ..+..++......-.-.-+|+.+++||.++. ..++..||..+ +..+.
T Consensus 71 g~~favi~g~~~----~~v~lyd~~~---~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~--~G~l~~wd~~~--~~~i~ 139 (194)
T PF08662_consen 71 GNEFAVIYGSMP----AKVTLYDVKG---KKIFSFGTQPRNTISWSPDGRFLVLAGFGNL--NGDLEFWDVRK--KKKIS 139 (194)
T ss_pred CCEEEEEEccCC----cccEEEcCcc---cEeEeecCCCceEEEECCCCCEEEEEEccCC--CcEEEEEECCC--CEEee
Confidence 456666655321 3688888863 3333333222222222237888888887542 25688999874 44454
Q ss_pred CCCCCCcceEEEEECCEEEEEeCCCC-CCCCCeEEEEeCCCC
Q psy10286 682 SMNVMRSRVALVANMGKLWAIGGYDG-VSNLPTVEVYDPSTD 722 (748)
Q Consensus 682 ~~p~~r~~~~~~~~~~~l~v~GG~~~-~~~~~~v~~yd~~~~ 722 (748)
...........-.-+|+.++...... ....+.+.+|+...+
T Consensus 140 ~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~ 181 (194)
T PF08662_consen 140 TFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGR 181 (194)
T ss_pred ccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCe
Confidence 43333221111112566666654321 112244555555443
No 235
>KOG0646|consensus
Probab=43.28 E-value=4e+02 Score=28.75 Aligned_cols=26 Identities=19% Similarity=0.424 Sum_probs=17.9
Q ss_pred EEECCEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 646 AALNNKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 646 ~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
...++.+++.|+.++ .+-++|+.+.+
T Consensus 285 is~DgtlLlSGd~dg-----~VcvWdi~S~Q 310 (476)
T KOG0646|consen 285 ISTDGTLLLSGDEDG-----KVCVWDIYSKQ 310 (476)
T ss_pred EecCccEEEeeCCCC-----CEEEEecchHH
Confidence 345899999998765 45566665543
No 236
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=42.68 E-value=2.4e+02 Score=25.00 Aligned_cols=67 Identities=13% Similarity=0.188 Sum_probs=39.5
Q ss_pred CEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE---CCEEEEEeCCCCCCCCCeEEEEeCCCCc--e
Q psy10286 650 NKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN---MGKLWAIGGYDGVSNLPTVEVYDPSTDS--W 724 (748)
Q Consensus 650 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W 724 (748)
..++++|- .+.+..||...|.=.-...++..-....+..+ ...+.++||. .++.-||.+.++ |
T Consensus 64 ~D~LliGt------~t~llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGn------csi~Gfd~~G~e~fW 131 (136)
T PF14781_consen 64 RDCLLIGT------QTSLLAYDVENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGN------CSIQGFDYEGNEIFW 131 (136)
T ss_pred cCEEEEec------cceEEEEEcccCchhhhhhCccceeEEEEEecCCCCCcEEEECce------EEEEEeCCCCcEEEE
Confidence 45788875 46899999988752222223322222222222 4679999994 367888877664 6
Q ss_pred EecC
Q psy10286 725 AFVA 728 (748)
Q Consensus 725 ~~~~ 728 (748)
+..+
T Consensus 132 tVtg 135 (136)
T PF14781_consen 132 TVTG 135 (136)
T ss_pred Eecc
Confidence 6543
No 237
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=42.20 E-value=80 Score=20.91 Aligned_cols=26 Identities=19% Similarity=0.183 Sum_probs=17.1
Q ss_pred eEEEEECCEEEEEccCCCCcccCeEEEEECCC
Q psy10286 596 GGVIAFDSYVYALGGHDGLSIFDSVERYDPKT 627 (748)
Q Consensus 596 ~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~ 627 (748)
.+.++.++.+|+.+.. ..++++|+++
T Consensus 15 ~~~~v~~g~vyv~~~d------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC------CEEEEEeCCC
Confidence 4457778998887762 4799999864
No 238
>KOG1446|consensus
Probab=41.75 E-value=4e+02 Score=27.21 Aligned_cols=214 Identities=14% Similarity=0.204 Sum_probs=98.5
Q ss_pred cceEEEEeCCCCceEEccCCCcccceeEE--EEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE
Q psy10286 476 LSTVEVFDPLVGRWQMAEAMSMLRSRVGV--AVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA 553 (748)
Q Consensus 476 ~~~~~~yd~~~~~W~~~~~~~~~r~~~~~--~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~ 553 (748)
-+.+..||..+++-...-.. ..++... -.......+.+-. ...+++...+..+|+.-+.=+=...+-..-.+.
T Consensus 35 dDsl~LYd~~~g~~~~ti~s--kkyG~~~~~Fth~~~~~i~sSt---k~d~tIryLsl~dNkylRYF~GH~~~V~sL~~s 109 (311)
T KOG1446|consen 35 DDSLRLYDSLSGKQVKTINS--KKYGVDLACFTHHSNTVIHSST---KEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVS 109 (311)
T ss_pred CCeEEEEEcCCCceeeEeec--ccccccEEEEecCCceEEEccC---CCCCceEEEEeecCceEEEcCCCCceEEEEEec
Confidence 35788999988865443322 2222221 1222233333322 233577788888887655432222222222222
Q ss_pred ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE--CCEEEEEccCCC-----------CcccCeE
Q psy10286 554 LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF--DSYVYALGGHDG-----------LSIFDSV 620 (748)
Q Consensus 554 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~-----------~~~~~~~ 620 (748)
-.+..++-|+.+ +.+..||....+-+-+-.++. -.++++ .|-++++|-..+ .+....+
T Consensus 110 P~~d~FlS~S~D-----~tvrLWDlR~~~cqg~l~~~~----~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf 180 (311)
T KOG1446|consen 110 PKDDTFLSSSLD-----KTVRLWDLRVKKCQGLLNLSG----RPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTF 180 (311)
T ss_pred CCCCeEEecccC-----CeEEeeEecCCCCceEEecCC----CcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeE
Confidence 245677777754 466677776555433321111 112222 344444442211 1111111
Q ss_pred EEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCC-CcceEEEEECCEE
Q psy10286 621 ERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVM-RSRVALVANMGKL 699 (748)
Q Consensus 621 ~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~l 699 (748)
-.-++...+|+.+.--|.+.+ .-...-++.+|++-+++|. ...++ ...|.+ +....++..-+.-
T Consensus 181 ~i~~~~~~ew~~l~FS~dGK~-iLlsT~~s~~~~lDAf~G~-~~~tf-------------s~~~~~~~~~~~a~ftPds~ 245 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFSPDGKS-ILLSTNASFIYLLDAFDGT-VKSTF-------------SGYPNAGNLPLSATFTPDSK 245 (311)
T ss_pred ccCCCCccceeeeEEcCCCCE-EEEEeCCCcEEEEEccCCc-EeeeE-------------eeccCCCCcceeEEECCCCc
Confidence 111245667777653333332 1122235566777666553 11111 111111 2223444445666
Q ss_pred EEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 700 WAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 700 ~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
||++|.++. .+.+|+.+++
T Consensus 246 Fvl~gs~dg----~i~vw~~~tg 264 (311)
T KOG1446|consen 246 FVLSGSDDG----TIHVWNLETG 264 (311)
T ss_pred EEEEecCCC----cEEEEEcCCC
Confidence 777775533 5888888775
No 239
>KOG1517|consensus
Probab=40.93 E-value=6.8e+02 Score=30.44 Aligned_cols=204 Identities=15% Similarity=0.188 Sum_probs=99.4
Q ss_pred eEEccCC-CcccceeEEEEE---CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEE-----ECCEEE
Q psy10286 489 WQMAEAM-SMLRSRVGVAVM---KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAA-----LNDKLY 559 (748)
Q Consensus 489 W~~~~~~-~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~-----~~~~iy 559 (748)
|..+..+ +.+|..-.++-. .|++|+.|+ ...+.++|....+ .+.++|..-. .+.++ ..|.++
T Consensus 1154 w~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd------~r~IRIWDa~~E~--~~~diP~~s~-t~vTaLS~~~~~gn~i 1224 (1387)
T KOG1517|consen 1154 WSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD------VRSIRIWDAHKEQ--VVADIPYGSS-TLVTALSADLVHGNII 1224 (1387)
T ss_pred eccccccCccCCCCCeeeehhhhCCeEEecCC------eeEEEEEecccce--eEeecccCCC-ccceeecccccCCceE
Confidence 4455443 455544433333 678888776 2567788877653 4455654422 22222 256777
Q ss_pred EEeCCCCCCCCceEEEEeCCC-------CeEEEccCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEE
Q psy10286 560 VCGGYDGVSSLNTVECYEPDK-------DQWRIVKSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTS 632 (748)
Q Consensus 560 v~GG~~~~~~~~~~~~yd~~~-------~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 632 (748)
+.|=-+| ++-.||... ..|+.-...+. .-|....-+|.-=++.|.. ..+++.+|+....=..
T Consensus 1225 ~AGfaDG-----svRvyD~R~a~~ds~v~~~R~h~~~~~--Iv~~slq~~G~~elvSgs~----~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1225 AAGFADG-----SVRVYDRRMAPPDSLVCVYREHNDVEP--IVHLSLQRQGLGELVSGSQ----DGDIQLLDLRMSSKET 1293 (1387)
T ss_pred EEeecCC-----ceEEeecccCCccccceeecccCCccc--ceeEEeecCCCcceeeecc----CCeEEEEecccCcccc
Confidence 7764443 455666432 23333322211 1222222233333333432 2368888887752111
Q ss_pred ccCCCCCC--c-cee-EEEE-CCEEEEEeccCCCccccEEEEEeCCCCcEEEc---cCCCCCCcce--EEEEECCEEEEE
Q psy10286 633 VKPMLTKR--C-RLG-VAAL-NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI---ASMNVMRSRV--ALVANMGKLWAI 702 (748)
Q Consensus 633 ~~~~p~~r--~-~~~-~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~---~~~p~~r~~~--~~~~~~~~l~v~ 702 (748)
.......+ . .++ +.++ .-.|+..|+. ..+-+|+...+.-..+ +..-..|.++ +++.+--++.+.
T Consensus 1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~------q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llA 1367 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSA------QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLA 1367 (1387)
T ss_pred cceeeeccccCccceeeeeccCCCeeeecCc------ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhh
Confidence 11222222 1 133 3344 3457777763 4677787766544333 2222233333 233445677777
Q ss_pred eCCCCCCCCCeEEEEeCCCC
Q psy10286 703 GGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 703 GG~~~~~~~~~v~~yd~~~~ 722 (748)
-|.++ +.|-+|...+.
T Consensus 1368 aG~~D----s~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1368 AGSAD----STVSIYSCEKP 1383 (1387)
T ss_pred hccCC----ceEEEeecCCc
Confidence 66543 36788876554
No 240
>KOG0308|consensus
Probab=40.28 E-value=5e+02 Score=29.45 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=51.0
Q ss_pred CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc--------cCCC-CCCcc-eEEEEE-CCEEEEEccCCCCcccCeEEEE
Q psy10286 555 NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV--------KSMQ-KHRSA-GGVIAF-DSYVYALGGHDGLSIFDSVERY 623 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~--------~~~~-~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~y 623 (748)
++.+++.||.+ ..++.||..+..=+.+ .+++ .++.. ++.+.- .+.+++-||. .+++..|
T Consensus 129 ~~~lvaSgGLD-----~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt-----ek~lr~w 198 (735)
T KOG0308|consen 129 NNELVASGGLD-----RKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT-----EKDLRLW 198 (735)
T ss_pred CceeEEecCCC-----ccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc-----ccceEEe
Confidence 77888899976 3566677665532111 2333 33333 233322 3468888887 3578899
Q ss_pred ECCCCcEEEccCCCCCCcceeEEEE--CCEEEEEeccCC
Q psy10286 624 DPKTDEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDG 660 (748)
Q Consensus 624 d~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~ 660 (748)
||.++.= +-.+..-+.+..+..+ +|.=.+.|+.++
T Consensus 199 Dprt~~k--imkLrGHTdNVr~ll~~dDGt~~ls~sSDg 235 (735)
T KOG0308|consen 199 DPRTCKK--IMKLRGHTDNVRVLLVNDDGTRLLSASSDG 235 (735)
T ss_pred ccccccc--eeeeeccccceEEEEEcCCCCeEeecCCCc
Confidence 9988742 2122223333334444 444555555443
No 241
>cd04379 RhoGAP_SYD1 RhoGAP_SYD1: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in SYD-1_like proteins. Syd-1, first identified and best studied in C.elegans, has been shown to play an important role in neuronal development by specifying axonal properties. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=39.20 E-value=1.3e+02 Score=28.97 Aligned_cols=46 Identities=9% Similarity=-0.100 Sum_probs=36.4
Q ss_pred hHHHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCcCCCCh
Q psy10286 287 LQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELHLMSE 332 (748)
Q Consensus 287 ~~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~~~~E 332 (748)
......+++|+..|+..+..+.+...|+...|..++...-+...+|
T Consensus 127 P~~n~~~L~~Ll~~L~~V~~~s~~NkMt~~NLAivf~P~Ll~~~~~ 172 (207)
T cd04379 127 PLSAKATLLLLLDHLSLVLSNSERNKMTPQNLAVCFGPVLMFCSQE 172 (207)
T ss_pred CHHHHHHHHHHHHHHHHHHHcccccCCChHHhHHhhccccCCCCcc
Confidence 3455678899999999999999999999999988887766654333
No 242
>PF03000 NPH3: NPH3 family; InterPro: IPR004249 The RPT2 protein is a signal transducer of the phototropic response in Arabidopsis thaliana. The RPT2 gene is light inducible; encodes a novel protein with putative phosphorylation sites, a nuclear localization signal, a BTB/POZ domain (IPR000210 from INTERPRO), and a coiled-coil domain. RPT2 belongs to a large gene family that includes the recently isolated NPH3 gene []. The NPH3 protein is a NPH1 photoreceptor-interacting protein that is essential for phototropism. Phototropism of A. thaliana seedlings in response to a blue light source is initiated by nonphototropic hypocotyl 1 (NPH1), a light-activated serine-threonine protein kinase []. NPH3 is a member of a large protein family, apparently specific to higher plants, and may function as an adapter or scaffold protein to bring together the enzymatic components of a NPH1-activated phosphorelay []. Many of the proteins in this group also contain the BTB/POZ domain (IPR000210 from INTERPRO) at the N-terminal.; GO: 0004871 signal transducer activity, 0009416 response to light stimulus
Probab=38.47 E-value=1.6e+02 Score=29.50 Aligned_cols=156 Identities=12% Similarity=0.190 Sum_probs=85.1
Q ss_pred CCHHHHHHHHHhhhceeEEeechhHHHHHHHHHHhcchhHHHHHHHHhhh----cccCCcccchhhhhhhhHHHHHHHhh
Q psy10286 155 IDAVAMEALINFVYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKK----RFHPNNVLDYYVLFSCRAMEALINFA 230 (748)
Q Consensus 155 ~~~~~~~~~l~flYtg~~~i~~~~v~~ll~~A~~l~i~~l~~~c~~~l~~----~l~~~ncl~i~~~~~~~~~~~ll~~~ 230 (748)
-....++.++.-+...+-.++...+..+|.+|..++... .|..-|++ +|+..+
T Consensus 68 ~~r~llEtiV~lLP~e~~svsc~FL~~LLr~A~~l~as~---~cr~~Le~rIg~qLd~At-------------------- 124 (258)
T PF03000_consen 68 EQRELLETIVSLLPPEKGSVSCSFLFRLLRAAIMLGASS---ACRNELERRIGSQLDQAT-------------------- 124 (258)
T ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHcCCCH---HHHHHHHHHHHHHhhhcc--------------------
Confidence 455677888888888888899999999999999998865 34444433 333222
Q ss_pred cceeEEEecccHHHHHHHh------hhcCcHHHHHHHHHHHhhcCCCCCcchHHHHHhhcCchHHHHHHHHHHHHhhhhh
Q psy10286 231 YSGRVTIHSQNVQSLMVVA------SFLQMQKVADACADFLKKRFHPNNVLGIRQFADTLNCLQLSEAADKYVQQYFHEV 304 (748)
Q Consensus 231 y~~~~~~~~~~~~~l~~~a------~~~~l~~l~~~c~~~l~~~l~~~n~~~i~~~a~~~~~~~l~~~~~~~i~~~~~~l 304 (748)
+.+|+.-+ ..|.++-+..+.+.|+...=.......--.....-....-..++-+-+-.++.++
T Consensus 125 -----------ldDLLIP~~~~~~~t~yDVd~V~riv~~Fl~~~~~~~~~~~~~~~~~~~~~~~~~~~VakLvD~YLaEi 193 (258)
T PF03000_consen 125 -----------LDDLLIPSSPSGEDTLYDVDLVQRIVEHFLSQEEEAGEEEESESESGSSPSSSSLVKVAKLVDGYLAEI 193 (258)
T ss_pred -----------HHHhcccCCCCcccchhhHHHHHHHHHHHHhcccccccccccccccccCCChHHHHHHHHHHHHHHHHh
Confidence 22233222 4567777788888888752110000000000000011112223333333444555
Q ss_pred ccCcccccCCHHhHhcccccCCc-CCCChHHHHHHHHHHHhcCc
Q psy10286 305 SMSDEFIGLGVNEVNDIVKRSEL-HLMSEEQVFEAVMRWVKHNA 347 (748)
Q Consensus 305 ~~~~~f~~L~~~~l~~il~~~~l-~~~~E~~v~~~v~~W~~~~~ 347 (748)
-... .|++..+..+.+.=+- ...+-+.+|.||-..++..+
T Consensus 194 A~D~---~L~~~kF~~Lae~lP~~aR~~hD~LYrAID~YLk~Hp 234 (258)
T PF03000_consen 194 APDP---NLKPSKFVALAEALPDSARPSHDGLYRAIDIYLKAHP 234 (258)
T ss_pred cCCC---CCCHHHHHHHHHHCCHhhhhccchHHHHHHHHHHHcc
Confidence 4433 4566666666543221 23455679999988887544
No 243
>KOG2111|consensus
Probab=38.18 E-value=4.6e+02 Score=26.93 Aligned_cols=124 Identities=18% Similarity=0.177 Sum_probs=62.8
Q ss_pred CCEEEEEccCC-CCcccCeEEEEECCCCcEEEccCCC------CCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCC
Q psy10286 602 DSYVYALGGHD-GLSIFDSVERYDPKTDEWTSVKPML------TKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 602 ~~~iyv~GG~~-~~~~~~~~~~yd~~~~~W~~~~~~p------~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
-+.+-++||.+ ..-..+.+..+|-....-..--.+. .-|..+-+++..++|||+- ...
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~Vyt---------------F~~ 122 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVYT---------------FPD 122 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEEE---------------cCC
Confidence 45666777765 3445788999985443321111111 1133444555566666553 221
Q ss_pred C--cEEEccCCCCCCcceEEEEE-CCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCCCCCcceEEEEeec
Q psy10286 675 D--EWKMIASMNVMRSRVALVAN-MGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGVGVIPI 744 (748)
Q Consensus 675 ~--~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 744 (748)
+ .-..+...+.|+.-++++.. +..+++|-|+.. .+|.+-|.....-..-..++..-+.-+|+.|..
T Consensus 123 n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~----GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~ 191 (346)
T KOG2111|consen 123 NPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT----GQVQIVDLASTKPNAPSIINAHDSDIACVALNL 191 (346)
T ss_pred ChhheeeeecccCCCceEeecCCCCceEEEcCCCcc----ceEEEEEhhhcCcCCceEEEcccCceeEEEEcC
Confidence 1 12222233334444444443 667888888654 367777776554421112444555556665543
No 244
>KOG3881|consensus
Probab=36.35 E-value=5.4e+02 Score=27.19 Aligned_cols=147 Identities=14% Similarity=0.225 Sum_probs=71.0
Q ss_pred CEEEEEccCCCCCCCCeEEEEECC--CCeEEEccC------CCCCcceeEEEEECC---EEEEEeCCCCCCCCceEEEEe
Q psy10286 509 NRLYAFGGYNGSERLSTVEEFDPV--RRVWNKVSP------MCFKRSAVGAAALND---KLYVCGGYDGVSSLNTVECYE 577 (748)
Q Consensus 509 ~~iyv~GG~~~~~~~~~v~~yd~~--t~~W~~~~~------~~~~r~~~~~~~~~~---~iyv~GG~~~~~~~~~~~~yd 577 (748)
-.|+.+||... .+.+..||.. ...|+..-. |-.|.....+..+.+ +-++-+ .....+-.||
T Consensus 161 p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~-----T~~hqvR~YD 232 (412)
T KOG3881|consen 161 PYIVATGGKEN---INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATI-----TRYHQVRLYD 232 (412)
T ss_pred CceEecCchhc---ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEE-----ecceeEEEec
Confidence 36888898653 3555566655 445765422 122333333333332 222222 2346778899
Q ss_pred CCCCeEEEcc---CCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC-EEE
Q psy10286 578 PDKDQWRIVK---SMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN-KIY 653 (748)
Q Consensus 578 ~~~~~W~~~~---~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~ 653 (748)
+..++ +.+. -+-.+....+...-++.||+ |-. ..++-.||..+..--...--....+--+...+.+ .++
T Consensus 233 t~~qR-RPV~~fd~~E~~is~~~l~p~gn~Iy~-gn~-----~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~l 305 (412)
T KOG3881|consen 233 TRHQR-RPVAQFDFLENPISSTGLTPSGNFIYT-GNT-----KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVL 305 (412)
T ss_pred CcccC-cceeEeccccCcceeeeecCCCcEEEE-ecc-----cchhheecccCceeeccccCCccCCcceEEEcCCCceE
Confidence 88655 2222 22223322233333445554 332 3467788887764322110011111222333433 677
Q ss_pred EEeccCCCccccEEEEEeCCCC
Q psy10286 654 VCGGYDGAIFLQSVEMYDPITD 675 (748)
Q Consensus 654 v~GG~~~~~~~~~v~~yd~~~~ 675 (748)
..+|.+ .-+-+||.+++
T Consensus 306 as~GLD-----RyvRIhD~ktr 322 (412)
T KOG3881|consen 306 ASCGLD-----RYVRIHDIKTR 322 (412)
T ss_pred Eeeccc-----eeEEEeecccc
Confidence 777754 35678888774
No 245
>KOG3881|consensus
Probab=36.27 E-value=5.5e+02 Score=27.19 Aligned_cols=147 Identities=14% Similarity=0.191 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCCCCCceEEEEeCCCC--eEEEccC------CCCCCcceEEEEECC---EEEEEccCCCCcccCeEEEEE
Q psy10286 556 DKLYVCGGYDGVSSLNTVECYEPDKD--QWRIVKS------MQKHRSAGGVIAFDS---YVYALGGHDGLSIFDSVERYD 624 (748)
Q Consensus 556 ~~iyv~GG~~~~~~~~~~~~yd~~~~--~W~~~~~------~~~~r~~~~~~~~~~---~iyv~GG~~~~~~~~~~~~yd 624 (748)
-.|.++||... .+.+..||..+. .|+.-.. |..|.+...+..+.+ +-++.+- ....+-.||
T Consensus 161 p~Iva~GGke~---~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-----~~hqvR~YD 232 (412)
T KOG3881|consen 161 PYIVATGGKEN---INELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-----RYHQVRLYD 232 (412)
T ss_pred CceEecCchhc---ccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-----cceeEEEec
Confidence 36888898653 466777777654 4665432 223334444444433 2222221 245788999
Q ss_pred CCCCcEEEccCCC---CCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEEC-CEEE
Q psy10286 625 PKTDEWTSVKPML---TKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANM-GKLW 700 (748)
Q Consensus 625 ~~~~~W~~~~~~p---~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~-~~l~ 700 (748)
+...+ ..+...+ .+-+..+.. .++..+++|-. ..++-.||..+..--...--...-+--++..+. .++.
T Consensus 233 t~~qR-RPV~~fd~~E~~is~~~l~-p~gn~Iy~gn~-----~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~l 305 (412)
T KOG3881|consen 233 TRHQR-RPVAQFDFLENPISSTGLT-PSGNFIYTGNT-----KGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVL 305 (412)
T ss_pred CcccC-cceeEeccccCcceeeeec-CCCcEEEEecc-----cchhheecccCceeeccccCCccCCcceEEEcCCCceE
Confidence 98543 2332222 222222222 23444444432 346778887775432211000011111223333 3566
Q ss_pred EEeCCCCCCCCCeEEEEeCCCC
Q psy10286 701 AIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 701 v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
..+|.+. .+-+||.+++
T Consensus 306 as~GLDR-----yvRIhD~ktr 322 (412)
T KOG3881|consen 306 ASCGLDR-----YVRIHDIKTR 322 (412)
T ss_pred Eeeccce-----eEEEeecccc
Confidence 7777653 4677777764
No 246
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=35.02 E-value=6.3e+02 Score=27.56 Aligned_cols=149 Identities=9% Similarity=-0.031 Sum_probs=77.5
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECC
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDS 603 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~ 603 (748)
..++.+|..+++=..+...+..-.. -...-+|+-+++-.... ...+++.+|..+++=..+...+..-...+...-+.
T Consensus 218 ~~i~~~~l~~g~~~~i~~~~g~~~~-P~fspDG~~l~f~~~rd--g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~ 294 (425)
T COG0823 218 PRIYYLDLNTGKRPVILNFNGNNGA-PAFSPDGSKLAFSSSRD--GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGS 294 (425)
T ss_pred ceEEEEeccCCccceeeccCCccCC-ccCCCCCCEEEEEECCC--CCccEEEEcCCCCcceecccCCccccCccCCCCCC
Confidence 4677778777765555442221111 12222444444433222 23688999988877333332222222222233345
Q ss_pred EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCc-EEEcc
Q psy10286 604 YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDE-WKMIA 681 (748)
Q Consensus 604 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~-W~~~~ 681 (748)
+|+..-...| ...++.||++..+=+.+..-..... +-...-+|+.+++-+..+.. -++..+|+.++. |+.+.
T Consensus 295 ~ivf~Sdr~G---~p~I~~~~~~g~~~~riT~~~~~~~-~p~~SpdG~~i~~~~~~~g~--~~i~~~~~~~~~~~~~lt 367 (425)
T COG0823 295 KIVFTSDRGG---RPQIYLYDLEGSQVTRLTFSGGGNS-NPVWSPDGDKIVFESSSGGQ--WDIDKNDLASGGKIRILT 367 (425)
T ss_pred EEEEEeCCCC---CcceEEECCCCCceeEeeccCCCCc-CccCCCCCCEEEEEeccCCc--eeeEEeccCCCCcEEEcc
Confidence 5555543333 3489999999887766643222222 22223344444443333222 678999998877 88774
No 247
>PRK02888 nitrous-oxide reductase; Validated
Probab=33.53 E-value=6.7e+02 Score=28.77 Aligned_cols=52 Identities=13% Similarity=0.097 Sum_probs=35.7
Q ss_pred CeEEEEECCC---CcEEEccCCCCCCcceeEEEE--CCEEEEEeccCCCccccEEEEEeCCC
Q psy10286 618 DSVERYDPKT---DEWTSVKPMLTKRCRLGVAAL--NNKIYVCGGYDGAIFLQSVEMYDPIT 674 (748)
Q Consensus 618 ~~~~~yd~~~---~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~ 674 (748)
+.|-+.|..+ ..+..+...|.++.-|++.+- +.++|+.|+.+ +++-++|..+
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS-----~tVSVIDv~k 352 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLS-----PTVTVIDVRK 352 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCC-----CcEEEEEChh
Confidence 4688999887 235666678888888888866 45677777653 4555666554
No 248
>KOG0270|consensus
Probab=33.17 E-value=6.5e+02 Score=27.12 Aligned_cols=188 Identities=16% Similarity=0.190 Sum_probs=84.0
Q ss_pred EEEEEccCCCCCCCCeEEEEECCCCeEEEccCCC-CCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 510 RLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMC-FKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 510 ~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~-~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
.|.+.||.+ ++|-.+|..+.+=.. .++ ..-.-+++... ...+.+.|++++.-.+.++-.-+-....|+..
T Consensus 257 nVLaSgsaD-----~TV~lWD~~~g~p~~--s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~ 329 (463)
T KOG0270|consen 257 NVLASGSAD-----KTVKLWDVDTGKPKS--SITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFD 329 (463)
T ss_pred eeEEecCCC-----ceEEEEEcCCCCcce--ehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEec
Confidence 577777643 578888888875332 222 12222233333 34566777766433332222212224457665
Q ss_pred cCCCCCCcceEEEEECCEEEEEccCCCCcccCeEEEEECCCC---cEEEccCCCCCCcceeEEEECCEEEEEeccCCCcc
Q psy10286 587 KSMQKHRSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTD---EWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIF 663 (748)
Q Consensus 587 ~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~---~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~ 663 (748)
+..-.--+.+ +.-..+++|--+ ..++-||.... .|+..+- ..+-++.+.-...-.+...||.+.
T Consensus 330 g~VEkv~w~~----~se~~f~~~tdd-----G~v~~~D~R~~~~~vwt~~AH-d~~ISgl~~n~~~p~~l~t~s~d~--- 396 (463)
T KOG0270|consen 330 GEVEKVAWDP----HSENSFFVSTDD-----GTVYYFDIRNPGKPVWTLKAH-DDEISGLSVNIQTPGLLSTASTDK--- 396 (463)
T ss_pred cceEEEEecC----CCceeEEEecCC-----ceEEeeecCCCCCceeEEEec-cCCcceEEecCCCCcceeeccccc---
Confidence 4332110000 112233443111 14666776654 4665431 011111111111223444444322
Q ss_pred ccEEEEEeCCCCcEEEccCCCCCCcce-EEEEECCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 664 LQSVEMYDPITDEWKMIASMNVMRSRV-ALVANMGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 664 ~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
.-.+|-++...-+-.....+...|-.+ +...-..-+|++||-.+ -+.++|..++
T Consensus 397 ~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~-----~~~vwd~~~~ 451 (463)
T KOG0270|consen 397 VVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKA-----VLRVWDIFTN 451 (463)
T ss_pred eEEEEeecCCCCcccccccccccceeecccCCCcceEEEecCccc-----eEEEeecccC
Confidence 234555655544444444555556322 22233567999999543 3455555443
No 249
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=31.56 E-value=5.6e+02 Score=25.93 Aligned_cols=201 Identities=13% Similarity=0.098 Sum_probs=96.1
Q ss_pred EEEeCCCCceEEccCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccC-CCCCcceeEEEEECC-E
Q psy10286 480 EVFDPLVGRWQMAEAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSP-MCFKRSAVGAAALND-K 557 (748)
Q Consensus 480 ~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~-~~~~r~~~~~~~~~~-~ 557 (748)
..-|-.-++|.+.-...-....|++.+++.+=++.| ..+.++.-+-.-.+|.+++- ...+-.-.+...++. +
T Consensus 67 letdd~g~tw~qal~~~gr~~f~sv~f~~~egw~vG------e~sqll~T~DgGqsWARi~~~e~~eg~~~sI~f~d~q~ 140 (339)
T COG4447 67 LETDDGGITWAQALDFLGRHAFHSVSFLGMEGWIVG------EPSQLLHTTDGGQSWARIPLSEKLEGFPDSITFLDDQR 140 (339)
T ss_pred EEecCCcccchhhhchhhhhheeeeeeecccccccC------CcceEEEecCCCcchhhchhhcCCCCCcceeEEecchh
Confidence 344555567876543222233444444455445544 23456666777788988853 122222334555543 4
Q ss_pred EEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCC--CcceEEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccC
Q psy10286 558 LYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKH--RSAGGVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKP 635 (748)
Q Consensus 558 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~ 635 (748)
-|++|-. ..++.-+-.-+.|+.+.+--.+ ..+..+.+.++...++|-.. . -.-..+.....|..-..
T Consensus 141 g~m~gd~------Gail~T~DgGk~Wk~l~e~~v~~~~~n~ia~s~dng~vaVg~rG-s----~f~T~~aGqt~~~~~g~ 209 (339)
T COG4447 141 GEMLGDQ------GAILKTTDGGKNWKALVEKAVGLAVPNEIARSADNGYVAVGARG-S----FFSTWGAGQTVWLPHGR 209 (339)
T ss_pred hhhhccc------ceEEEecCCcccHhHhcccccchhhhhhhhhhccCCeEEEecCc-c----eEecCCCCccEEeccCC
Confidence 4555542 2344444456679877543322 22223334455655555431 0 11123333443433222
Q ss_pred CCCCCcceeEEE-ECC--EEEEEeccCCCccccEEEEEeCCCCcEEEccC-CCCCCcceEEE----EECCEEEEEeC
Q psy10286 636 MLTKRCRLGVAA-LNN--KIYVCGGYDGAIFLQSVEMYDPITDEWKMIAS-MNVMRSRVALV----ANMGKLWAIGG 704 (748)
Q Consensus 636 ~p~~r~~~~~~~-~~~--~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-~p~~r~~~~~~----~~~~~l~v~GG 704 (748)
- ..|..-++-. -.+ -+++.||.. +-...+..-+.|..++. ....|...+.. .-.+.+||.|+
T Consensus 210 ~-s~~~letmg~adag~~g~la~g~qg------~~f~~~~~gD~wsd~~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~ 279 (339)
T COG4447 210 N-SSRRLETMGLADAGSKGLLARGGQG------DQFSWVCGGDEWSDQGEPVNLGRRSWGLLDFAPRAPPEVWVSGI 279 (339)
T ss_pred C-ccchhcccccccCCccceEEEcccc------ceeecCCCcccccccccchhcccCCCccccccccCCCCeEEecc
Confidence 2 2222222222 233 477888753 23345566788988753 22333333222 23678888876
No 250
>KOG2715|consensus
Probab=30.68 E-value=66 Score=29.26 Aligned_cols=50 Identities=12% Similarity=0.244 Sum_probs=40.2
Q ss_pred hhhHHHHHHHhhcceeEEEecccHHHHHHHhhhcCcHHHHHHHHHHHhhc
Q psy10286 219 SCRAMEALINFAYSGRVTIHSQNVQSLMVVASFLQMQKVADACADFLKKR 268 (748)
Q Consensus 219 ~~~~~~~ll~~~y~~~~~~~~~~~~~l~~~a~~~~l~~l~~~c~~~l~~~ 268 (748)
+...|--+++|+..|.+.+..-.=..++..|+|+.++.|.++..+.|.+.
T Consensus 72 DP~~FgpvLNylRhgklvl~~l~eeGvL~EAefyn~~~li~likd~i~dR 121 (210)
T KOG2715|consen 72 DPFYFGPVLNYLRHGKLVLNKLSEEGVLEEAEFYNDPSLIQLIKDRIQDR 121 (210)
T ss_pred CcchHHHHHHHHhcchhhhhhhhhhccchhhhccCChHHHHHHHHHHHHH
Confidence 44566779999999988777655567889999999999999888877753
No 251
>KOG0274|consensus
Probab=30.13 E-value=8.5e+02 Score=27.55 Aligned_cols=176 Identities=20% Similarity=0.285 Sum_probs=86.6
Q ss_pred CCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE
Q psy10286 522 RLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF 601 (748)
Q Consensus 522 ~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 601 (748)
..+.|.++|..+..-..+-.- .-..--++.+++.+.+.|..++ .+-+||+.+.+. +..+...-..-....+
T Consensus 309 ~D~tVkVW~v~n~~~l~l~~~--h~~~V~~v~~~~~~lvsgs~d~-----~v~VW~~~~~~c--l~sl~gH~~~V~sl~~ 379 (537)
T KOG0274|consen 309 RDNTVKVWDVTNGACLNLLRG--HTGPVNCVQLDEPLLVSGSYDG-----TVKVWDPRTGKC--LKSLSGHTGRVYSLIV 379 (537)
T ss_pred CCceEEEEeccCcceEEEecc--ccccEEEEEecCCEEEEEecCc-----eEEEEEhhhcee--eeeecCCcceEEEEEe
Confidence 346788888776543322110 0111123344677777777553 577788774442 2222211000111234
Q ss_pred CC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEc
Q psy10286 602 DS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMI 680 (748)
Q Consensus 602 ~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~ 680 (748)
++ ..++-|+.+ ..+..+|+.+.. ..+..+......-......+.+++-++.++ .|..+|.+++.=...
T Consensus 380 ~~~~~~~Sgs~D-----~~IkvWdl~~~~-~c~~tl~~h~~~v~~l~~~~~~Lvs~~aD~-----~Ik~WD~~~~~~~~~ 448 (537)
T KOG0274|consen 380 DSENRLLSGSLD-----TTIKVWDLRTKR-KCIHTLQGHTSLVSSLLLRDNFLVSSSADG-----TIKLWDAEEGECLRT 448 (537)
T ss_pred cCcceEEeeeec-----cceEeecCCchh-hhhhhhcCCcccccccccccceeEeccccc-----cEEEeecccCceeee
Confidence 55 555555554 357777776664 222222222221122233566777776543 677788777654443
Q ss_pred cCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCc
Q psy10286 681 ASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDS 723 (748)
Q Consensus 681 ~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 723 (748)
-.-+ ...+..+...+...++..+.+ ..+.+||..+.+
T Consensus 449 ~~~~-~~~~v~~l~~~~~~il~s~~~-----~~~~l~dl~~~~ 485 (537)
T KOG0274|consen 449 LEGR-HVGGVSALALGKEEILCSSDD-----GSVKLWDLRSGT 485 (537)
T ss_pred eccC-CcccEEEeecCcceEEEEecC-----CeeEEEecccCc
Confidence 2221 233344444445666666644 356777776654
No 252
>KOG1665|consensus
Probab=30.07 E-value=61 Score=31.02 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=37.2
Q ss_pred hhhHHHHHHHhhcceeEEE-ecccHHHHHHHhhhcCcHHHHHHHHH
Q psy10286 219 SCRAMEALINFAYSGRVTI-HSQNVQSLMVVASFLQMQKVADACAD 263 (748)
Q Consensus 219 ~~~~~~~ll~~~y~~~~~~-~~~~~~~l~~~a~~~~l~~l~~~c~~ 263 (748)
+...|+-+++|+..|.+.. +.-++..+++.|+||++-.|++..++
T Consensus 60 sp~yFepIlNyLr~Gq~~~~s~i~~lgvLeeArff~i~sL~~hle~ 105 (302)
T KOG1665|consen 60 SPKYFEPILNYLRDGQIPSLSDIDCLGVLEEARFFQILSLKDHLED 105 (302)
T ss_pred CchhhHHHHHHHhcCceeecCCccHHHHHHHhhHHhhHhHHhHHhh
Confidence 3457788999999998754 56689999999999999888877665
No 253
>KOG0640|consensus
Probab=28.86 E-value=3.3e+02 Score=27.79 Aligned_cols=96 Identities=15% Similarity=0.170 Sum_probs=50.5
Q ss_pred EecccccccCCCccceEEEEeCCCCceEEccCCCccccee-EEEEE--CCEEEEEccCCCCCCCCeEEEEECCCCeEEEc
Q psy10286 463 ISTKSCLTKAGDSLSTVEVFDPLVGRWQMAEAMSMLRSRV-GVAVM--KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKV 539 (748)
Q Consensus 463 ~~~~~~~~~~g~~~~~~~~yd~~~~~W~~~~~~~~~r~~~-~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~ 539 (748)
+.+.+.....|..-..+..||..|-+-..-+.......+. ..+-+ .+++||.|..+| .+-.||-.+++-.
T Consensus 224 fHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG-----~IklwDGVS~rCv-- 296 (430)
T KOG0640|consen 224 FHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDG-----AIKLWDGVSNRCV-- 296 (430)
T ss_pred ecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCC-----cEEeeccccHHHH--
Confidence 3344444444455567889999887765444322222222 22222 679999998664 4666777766432
Q ss_pred cCCCCCcce--eEEEEE--CCEEEEEeCCC
Q psy10286 540 SPMCFKRSA--VGAAAL--NDKLYVCGGYD 565 (748)
Q Consensus 540 ~~~~~~r~~--~~~~~~--~~~iyv~GG~~ 565 (748)
..+..+..+ -+++.+ |++..+..|.+
T Consensus 297 ~t~~~AH~gsevcSa~Ftkn~kyiLsSG~D 326 (430)
T KOG0640|consen 297 RTIGNAHGGSEVCSAVFTKNGKYILSSGKD 326 (430)
T ss_pred HHHHhhcCCceeeeEEEccCCeEEeecCCc
Confidence 222222222 222222 66666666754
No 254
>KOG0272|consensus
Probab=28.76 E-value=7.5e+02 Score=26.50 Aligned_cols=139 Identities=15% Similarity=0.250 Sum_probs=69.8
Q ss_pred eEEEE-ECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE-CCEEEEEccCCCCcccCeEEEEECC
Q psy10286 549 VGAAA-LNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF-DSYVYALGGHDGLSIFDSVERYDPK 626 (748)
Q Consensus 549 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~ 626 (748)
++++. .+|.+...||.+... -++|..+..-...=.- .-+.-+++... +|+....||.++ .+-++|..
T Consensus 307 ~~iaf~~DGSL~~tGGlD~~~-----RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~Dn-----t~kVWDLR 375 (459)
T KOG0272|consen 307 FSIAFQPDGSLAATGGLDSLG-----RVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSDN-----TCKVWDLR 375 (459)
T ss_pred ceeEecCCCceeeccCccchh-----heeecccCcEEEEecc-cccceeeEeECCCceEEeecCCCC-----cEEEeeec
Confidence 34444 389999999976432 2456666553322111 11222233322 788888888754 23344443
Q ss_pred CCcEEEccCCCCCCcceeEEEE---CCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcc-eEEE-EECCEEEE
Q psy10286 627 TDEWTSVKPMLTKRCRLGVAAL---NNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSR-VALV-ANMGKLWA 701 (748)
Q Consensus 627 ~~~W~~~~~~p~~r~~~~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~-~~~~-~~~~~l~v 701 (748)
...= +-.+|.-+...+-|.+ .|+.++.+|++ +.+-+|. +..|+.+..+..--.- .++. ..++..++
T Consensus 376 ~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD-----~t~kiWs--~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~ 446 (459)
T KOG0272|consen 376 MRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYD-----NTVKIWS--TRTWSPLKSLAGHEGKVISLDISPDSQAIA 446 (459)
T ss_pred cccc--ceecccccchhhheEecccCCeEEEEcccC-----cceeeec--CCCcccchhhcCCccceEEEEeccCCceEE
Confidence 3221 3334433333333333 47788888765 3455554 4557777665432211 2222 23566666
Q ss_pred EeCCCC
Q psy10286 702 IGGYDG 707 (748)
Q Consensus 702 ~GG~~~ 707 (748)
.+|++.
T Consensus 447 t~s~DR 452 (459)
T KOG0272|consen 447 TSSFDR 452 (459)
T ss_pred EeccCc
Confidence 666553
No 255
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=28.11 E-value=4.7e+02 Score=23.91 Aligned_cols=82 Identities=7% Similarity=0.021 Sum_probs=49.0
Q ss_pred EEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCc----ceEEEEE-CCEEEEEccCCCCcccCeEEEEE--
Q psy10286 552 AALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRS----AGGVIAF-DSYVYALGGHDGLSIFDSVERYD-- 624 (748)
Q Consensus 552 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~----~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd-- 624 (748)
+.++|.+|-++.........-+..||..+.+.....++|.... .....+. ++++-++--.. ....-++|+.+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~~lP~~~~~~~~~~~L~~v~~~~L~~~~~~~-~~~~~~IWvm~~~ 80 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSLPLPFCNDDDDDSVSLSVVRGDCLCVLYQCD-ETSKIEIWVMKKY 80 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEECCCCccCccCCEEEEEEecCCEEEEEEecc-CCccEEEEEEeee
Confidence 5678999988765433332368999999999944444554332 2233223 67777774321 11124677766
Q ss_pred -CCCCcEEEcc
Q psy10286 625 -PKTDEWTSVK 634 (748)
Q Consensus 625 -~~~~~W~~~~ 634 (748)
-....|+++-
T Consensus 81 ~~~~~SWtK~~ 91 (164)
T PF07734_consen 81 GYGKESWTKLF 91 (164)
T ss_pred ccCcceEEEEE
Confidence 2367899863
No 256
>KOG0263|consensus
Probab=27.43 E-value=5.6e+02 Score=29.53 Aligned_cols=107 Identities=17% Similarity=0.223 Sum_probs=56.4
Q ss_pred EEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEE-EECCEEEEEeccCCCccccEEEEEeCCCCc
Q psy10286 598 VIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVA-ALNNKIYVCGGYDGAIFLQSVEMYDPITDE 676 (748)
Q Consensus 598 ~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~ 676 (748)
+..+-+.-|+++|..+ ..+-.+|..++.-.++=.- ..+.-.+++ ...|+-++.|+.+ ..|.+||..+.+
T Consensus 541 v~FHPNs~Y~aTGSsD----~tVRlWDv~~G~~VRiF~G-H~~~V~al~~Sp~Gr~LaSg~ed-----~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 541 VSFHPNSNYVATGSSD----RTVRLWDVSTGNSVRIFTG-HKGPVTALAFSPCGRYLASGDED-----GLIKIWDLANGS 610 (707)
T ss_pred EEECCcccccccCCCC----ceEEEEEcCCCcEEEEecC-CCCceEEEEEcCCCceEeecccC-----CcEEEEEcCCCc
Confidence 4455788899988533 2466677766654443211 111111222 2256666666644 357778877642
Q ss_pred EEEccCCCCCCc-ceE-EEEECCEEEEEeCCCCCCCCCeEEEEeCCC
Q psy10286 677 WKMIASMNVMRS-RVA-LVANMGKLWAIGGYDGVSNLPTVEVYDPST 721 (748)
Q Consensus 677 W~~~~~~p~~r~-~~~-~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~ 721 (748)
.+..+-.... ..+ ....+|.+++.||.+ ++|-.+|...
T Consensus 611 --~v~~l~~Ht~ti~SlsFS~dg~vLasgg~D-----nsV~lWD~~~ 650 (707)
T KOG0263|consen 611 --LVKQLKGHTGTIYSLSFSRDGNVLASGGAD-----NSVRLWDLTK 650 (707)
T ss_pred --chhhhhcccCceeEEEEecCCCEEEecCCC-----CeEEEEEchh
Confidence 1222211111 112 223589999999965 3566666543
No 257
>KOG0308|consensus
Probab=26.67 E-value=8.9e+02 Score=27.59 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=38.4
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEc--------cCCC-CCcce-eEEEEE-CCEEEEEeCCCCCCCCceEEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKV--------SPMC-FKRSA-VGAAAL-NDKLYVCGGYDGVSSLNTVECY 576 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~--------~~~~-~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~y 576 (748)
++.+++.||.+. .++.||..+..=+.+ .+++ .++.. ++.+.- .+.+++-||.. +++..|
T Consensus 129 ~~~lvaSgGLD~-----~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgte-----k~lr~w 198 (735)
T KOG0308|consen 129 NNELVASGGLDR-----KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTE-----KDLRLW 198 (735)
T ss_pred CceeEEecCCCc-----cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcc-----cceEEe
Confidence 778999999763 466666665422111 2233 23322 222222 45688888854 678899
Q ss_pred eCCCCe
Q psy10286 577 EPDKDQ 582 (748)
Q Consensus 577 d~~~~~ 582 (748)
||.+.+
T Consensus 199 Dprt~~ 204 (735)
T KOG0308|consen 199 DPRTCK 204 (735)
T ss_pred cccccc
Confidence 998865
No 258
>KOG0265|consensus
Probab=26.21 E-value=7.2e+02 Score=25.42 Aligned_cols=60 Identities=18% Similarity=0.327 Sum_probs=34.6
Q ss_pred CCEEEEEeCCCCCCCCceEEE---EeCCCCeEEEccCCCCCCcceEEEEE------CCEEEEEccCCCCcccCeEEEEEC
Q psy10286 555 NDKLYVCGGYDGVSSLNTVEC---YEPDKDQWRIVKSMQKHRSAGGVIAF------DSYVYALGGHDGLSIFDSVERYDP 625 (748)
Q Consensus 555 ~~~iyv~GG~~~~~~~~~~~~---yd~~~~~W~~~~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~~~~yd~ 625 (748)
+|..++.||.+. .+.. |.-..|.|..- +|+.|+. ++...+-.|.+ ..+..+|.
T Consensus 58 ~gs~~aSgG~Dr-----~I~LWnv~gdceN~~~lk--------gHsgAVM~l~~~~d~s~i~S~gtD-----k~v~~wD~ 119 (338)
T KOG0265|consen 58 DGSCFASGGSDR-----AIVLWNVYGDCENFWVLK--------GHSGAVMELHGMRDGSHILSCGTD-----KTVRGWDA 119 (338)
T ss_pred CCCeEeecCCcc-----eEEEEeccccccceeeec--------cccceeEeeeeccCCCEEEEecCC-----ceEEEEec
Confidence 566777788652 2332 44456666544 5555554 34444444432 46889999
Q ss_pred CCCcEEE
Q psy10286 626 KTDEWTS 632 (748)
Q Consensus 626 ~~~~W~~ 632 (748)
++++-..
T Consensus 120 ~tG~~~r 126 (338)
T KOG0265|consen 120 ETGKRIR 126 (338)
T ss_pred ccceeee
Confidence 8887543
No 259
>KOG1523|consensus
Probab=25.22 E-value=7.7e+02 Score=25.46 Aligned_cols=97 Identities=14% Similarity=0.272 Sum_probs=49.6
Q ss_pred CCeEEEEECCCCe-EEEccCCCCCcceeEEEEE---CCEEEEEeCCCCCCCCceEEEEeC-CCCeEEEccCCCCCCcceE
Q psy10286 523 LSTVEEFDPVRRV-WNKVSPMCFKRSAVGAAAL---NDKLYVCGGYDGVSSLNTVECYEP-DKDQWRIVKSMQKHRSAGG 597 (748)
Q Consensus 523 ~~~v~~yd~~t~~-W~~~~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~-~~~~W~~~~~~~~~r~~~~ 597 (748)
.+++.+|....+. |+....+..--..-..+-. .++| +-++.+ ...+++.. +.++|....-+. |.+-+
T Consensus 31 ~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrI-vtcs~d-----rnayVw~~~~~~~WkptlvLl--RiNrA 102 (361)
T KOG1523|consen 31 NHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRI-VTCSHD-----RNAYVWTQPSGGTWKPTLVLL--RINRA 102 (361)
T ss_pred CceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCce-eEccCC-----CCccccccCCCCeeccceeEE--Eeccc
Confidence 4588999988888 9887554322111111111 2344 344444 23455555 788897664432 22222
Q ss_pred EEEE----CCEEEEEccCCCCcccCeEEEEECCCCcE
Q psy10286 598 VIAF----DSYVYALGGHDGLSIFDSVERYDPKTDEW 630 (748)
Q Consensus 598 ~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 630 (748)
+..+ +...|++|+. ...-.++.|.-+.+=|
T Consensus 103 At~V~WsP~enkFAVgSg---ar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 103 ATCVKWSPKENKFAVGSG---ARLISVCYYEQENDWW 136 (361)
T ss_pred eeeEeecCcCceEEeccC---ccEEEEEEEeccccee
Confidence 2222 4455666653 2244566666544444
No 260
>KOG0272|consensus
Probab=25.05 E-value=8.7e+02 Score=26.03 Aligned_cols=109 Identities=17% Similarity=0.238 Sum_probs=55.9
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE-CCEEEEEeCCCCCCCCceEEEEeCCCCeEEEc
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL-NDKLYVCGGYDGVSSLNTVECYEPDKDQWRIV 586 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 586 (748)
+|.+.+.||.+.- -.++|..+..-...=.- .-+.-+++... ||+-.+-||.+ +.+-++|.....= +
T Consensus 314 DGSL~~tGGlD~~-----~RvWDlRtgr~im~L~g-H~k~I~~V~fsPNGy~lATgs~D-----nt~kVWDLR~r~~--l 380 (459)
T KOG0272|consen 314 DGSLAATGGLDSL-----GRVWDLRTGRCIMFLAG-HIKEILSVAFSPNGYHLATGSSD-----NTCKVWDLRMRSE--L 380 (459)
T ss_pred CCceeeccCccch-----hheeecccCcEEEEecc-cccceeeEeECCCceEEeecCCC-----CcEEEeeeccccc--c
Confidence 8999999997632 23457776653322110 12222333333 78888888755 4455566543321 2
Q ss_pred cCCCCCCcceEEEEE---CCEEEEEccCCCCcccCeEEEEECCCCcEEEccCC
Q psy10286 587 KSMQKHRSAGGVIAF---DSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPM 636 (748)
Q Consensus 587 ~~~~~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 636 (748)
-.||....--+-+-+ .|+..+.+|+++ .+-.| .+..|+.+..+
T Consensus 381 y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~-----t~kiW--s~~~~~~~ksL 426 (459)
T KOG0272|consen 381 YTIPAHSNLVSQVKYSPQEGYFLVTASYDN-----TVKIW--STRTWSPLKSL 426 (459)
T ss_pred eecccccchhhheEecccCCeEEEEcccCc-----ceeee--cCCCcccchhh
Confidence 234433222222222 467777777643 23333 24557666543
No 261
>KOG0649|consensus
Probab=24.91 E-value=6.9e+02 Score=24.75 Aligned_cols=129 Identities=15% Similarity=0.190 Sum_probs=69.0
Q ss_pred ECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEE
Q psy10286 507 MKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWR 584 (748)
Q Consensus 507 ~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~ 584 (748)
-.|.|+..||- ..++..|..+++-+..-. ...-+-|+.+.- ++.|+ .||.+| .+-.+|..|.+-.
T Consensus 125 ~enSi~~AgGD------~~~y~~dlE~G~i~r~~r-GHtDYvH~vv~R~~~~qil-sG~EDG-----tvRvWd~kt~k~v 191 (325)
T KOG0649|consen 125 SENSILFAGGD------GVIYQVDLEDGRIQREYR-GHTDYVHSVVGRNANGQIL-SGAEDG-----TVRVWDTKTQKHV 191 (325)
T ss_pred CCCcEEEecCC------eEEEEEEecCCEEEEEEc-CCcceeeeeeecccCccee-ecCCCc-----cEEEEecccccee
Confidence 47888888873 357888999988765421 123355665553 34443 455443 4667788777654
Q ss_pred Ec-cC-----CCCCCcce--EEEEECCEEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEe
Q psy10286 585 IV-KS-----MQKHRSAG--GVIAFDSYVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCG 656 (748)
Q Consensus 585 ~~-~~-----~~~~r~~~--~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 656 (748)
.+ .+ ...|..+- .+...+..-.+.||. ..+-.++....+-+.+ +|.|...+-+..+++.+++.|
T Consensus 192 ~~ie~yk~~~~lRp~~g~wigala~~edWlvCGgG------p~lslwhLrsse~t~v--fpipa~v~~v~F~~d~vl~~G 263 (325)
T KOG0649|consen 192 SMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGGG------PKLSLWHLRSSESTCV--FPIPARVHLVDFVDDCVLIGG 263 (325)
T ss_pred EEeccccChhhcCcccCceeEEEeccCceEEecCC------CceeEEeccCCCceEE--EecccceeEeeeecceEEEec
Confidence 43 22 22222222 444445555666664 2344555555544444 333333444444555555555
No 262
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=24.42 E-value=8e+02 Score=25.37 Aligned_cols=195 Identities=15% Similarity=0.123 Sum_probs=0.0
Q ss_pred CeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeE-EEc----cCCCCCCcceEE
Q psy10286 524 STVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQW-RIV----KSMQKHRSAGGV 598 (748)
Q Consensus 524 ~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~----~~~~~~r~~~~~ 598 (748)
+.+++||+.+++ ...-..|.....-...--++.|.+... .+..+++++..- +.+ ...+..|.+=..
T Consensus 47 ~~i~r~~~~~g~-~~~~~~p~~~~~~~~~d~~g~Lv~~~~--------g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~ 117 (307)
T COG3386 47 GRIHRLDPETGK-KRVFPSPGGFSSGALIDAGGRLIACEH--------GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGV 117 (307)
T ss_pred CeEEEecCCcCc-eEEEECCCCcccceeecCCCeEEEEcc--------ccEEEeccCCceeEEeccccCCCCcCCCCcee
Q ss_pred EEECCEEEEEccC------CCCcccCeEEEEECCCCcEEEccCCCCCCcceeEEEECC-EEEEEeccCCCccccEEEEEe
Q psy10286 599 IAFDSYVYALGGH------DGLSIFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNN-KIYVCGGYDGAIFLQSVEMYD 671 (748)
Q Consensus 599 ~~~~~~iyv~GG~------~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~-~i~v~GG~~~~~~~~~v~~yd 671 (748)
+.-+|.+|+-.-. ........+|++|| .....++..-.....+--+..-++ .+|+.- ...+.++.|+
T Consensus 118 v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aD-----T~~~~i~r~~ 191 (307)
T COG3386 118 VDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD-----TPANRIHRYD 191 (307)
T ss_pred EcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEe-----CCCCeEEEEe
Q ss_pred CCC--------CcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCCCeEEEEeCCCCceEecCCCCCCCcceEE
Q psy10286 672 PIT--------DEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNLPTVEVYDPSTDSWAFVAPMCAHEGGVGV 739 (748)
Q Consensus 672 ~~~--------~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~ 739 (748)
... +.+..... ...+-.-.++--+|.||+.+...+. .|.+|+|. ++=...-.+|..+....|
T Consensus 192 ~d~~~g~~~~~~~~~~~~~-~~G~PDG~~vDadG~lw~~a~~~g~----~v~~~~pd-G~l~~~i~lP~~~~t~~~ 261 (307)
T COG3386 192 LDPATGPIGGRRGFVDFDE-EPGLPDGMAVDADGNLWVAAVWGGG----RVVRFNPD-GKLLGEIKLPVKRPTNPA 261 (307)
T ss_pred cCcccCccCCcceEEEccC-CCCCCCceEEeCCCCEEEecccCCc----eEEEECCC-CcEEEEEECCCCCCccce
No 263
>KOG0306|consensus
Probab=24.21 E-value=1.2e+03 Score=27.24 Aligned_cols=65 Identities=8% Similarity=0.190 Sum_probs=36.2
Q ss_pred EEEEECCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECC-EEEEEeCCCCCCCCceEEEEeCCC
Q psy10286 503 GVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALND-KLYVCGGYDGVSSLNTVECYEPDK 580 (748)
Q Consensus 503 ~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~ 580 (748)
+.++..+.+.++.|.+ .++-.+|..+.+ .+..++.. +-+++..+.| +..+.|+.+| .+..||..+
T Consensus 378 sl~vS~d~~~~~Sga~-----~SikiWn~~t~k--ciRTi~~~-y~l~~~Fvpgd~~Iv~G~k~G-----el~vfdlaS 443 (888)
T KOG0306|consen 378 SLCVSSDSILLASGAG-----ESIKIWNRDTLK--CIRTITCG-YILASKFVPGDRYIVLGTKNG-----ELQVFDLAS 443 (888)
T ss_pred EEEeecCceeeeecCC-----CcEEEEEccCcc--eeEEeccc-cEEEEEecCCCceEEEeccCC-----ceEEEEeeh
Confidence 3455555555554422 356667766554 33344444 6677777744 5555566543 567777654
No 264
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=23.13 E-value=5.8e+02 Score=23.28 Aligned_cols=127 Identities=8% Similarity=0.069 Sum_probs=67.3
Q ss_pred EEECCEEEEEccCCCCcccCeEEEEECCCCcE-EEccCCCCCCc----ceeEEEE-CCEEEEEeccCCCccccEEEEEe-
Q psy10286 599 IAFDSYVYALGGHDGLSIFDSVERYDPKTDEW-TSVKPMLTKRC----RLGVAAL-NNKIYVCGGYDGAIFLQSVEMYD- 671 (748)
Q Consensus 599 ~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~----~~~~~~~-~~~i~v~GG~~~~~~~~~v~~yd- 671 (748)
+.++|.+|=++.........-+..||..+.+. ..+ ++|.... .....++ ++++-++--. .....-+||+-+
T Consensus 2 V~vnG~~hW~~~~~~~~~~~~IlsFDl~~E~F~~~~-~lP~~~~~~~~~~~L~~v~~~~L~~~~~~-~~~~~~~IWvm~~ 79 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDEKDFILSFDLSTEKFGRSL-PLPFCNDDDDDSVSLSVVRGDCLCVLYQC-DETSKIEIWVMKK 79 (164)
T ss_pred EEECCEEEeeEEecCCCCceEEEEEeccccccCCEE-CCCCccCccCCEEEEEEecCCEEEEEEec-cCCccEEEEEEee
Confidence 45788888777654332222699999999999 444 4443322 2333223 6677666321 112235777766
Q ss_pred --CCCCcEEEccC-----CCCCCc---ceEEEEE-CCEEEEEeCCCCCCC-CCeEEEEeCCCCceEecC
Q psy10286 672 --PITDEWKMIAS-----MNVMRS---RVALVAN-MGKLWAIGGYDGVSN-LPTVEVYDPSTDSWAFVA 728 (748)
Q Consensus 672 --~~~~~W~~~~~-----~p~~r~---~~~~~~~-~~~l~v~GG~~~~~~-~~~v~~yd~~~~~W~~~~ 728 (748)
....+|+++=. .+.... ....... +++++|.-....... .+.+++++ +.+.-+.+.
T Consensus 80 ~~~~~~SWtK~~~i~~~~~~~~~~~~~~~~~~i~~~~~vlv~~~~~~~~~~~~~i~i~g-~~~~~~~~~ 147 (164)
T PF07734_consen 80 YGYGKESWTKLFTIDLPPLPSLFFHFRNPSFFIDEEKKVLVCCDKETQREEKNKIYIVG-EDGKFIEVD 147 (164)
T ss_pred eccCcceEEEEEEEecCCCCCcccccccceEEEeCCCeEEEEEcCCCCccceeEEEEEc-CCCEEEEcc
Confidence 23678998622 111111 1222222 456666533222211 25688887 566666554
No 265
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=23.02 E-value=4.9e+02 Score=28.86 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=49.6
Q ss_pred ccCeEEEEECCCCcEEEccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEE
Q psy10286 616 IFDSVERYDPKTDEWTSVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVAN 695 (748)
Q Consensus 616 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~ 695 (748)
.++.++.+|+.++.--.-.++..-| +.+....++.+.+++|.+|...+ .+...|+.+..-..-+..+..+.. .+...
T Consensus 373 ~ls~LvllD~~tg~~l~~S~~~~Ir-~r~~~~~~~~~vaI~g~~G~~~i-kLvlid~~tLev~kes~~~i~~~S-~l~~~ 449 (489)
T PF05262_consen 373 YLSELVLLDSDTGDTLKRSPVNGIR-GRTFYEREDDLVAIAGCSGNAAI-KLVLIDPETLEVKKESEDEISWQS-SLIVD 449 (489)
T ss_pred cceeEEEEeCCCCceecccccceec-cceeEEcCCCEEEEeccCCchhe-EEEecCcccceeeeeccccccccC-ceEEc
Confidence 4678999999998644444433323 34556678889999998555432 344457777665554444333322 33344
Q ss_pred CCEEEEE
Q psy10286 696 MGKLWAI 702 (748)
Q Consensus 696 ~~~l~v~ 702 (748)
++.+|++
T Consensus 450 ~~~iyaV 456 (489)
T PF05262_consen 450 GQMIYAV 456 (489)
T ss_pred CCeEEEE
Confidence 6677755
No 266
>KOG0315|consensus
Probab=22.72 E-value=7.7e+02 Score=24.55 Aligned_cols=186 Identities=12% Similarity=0.111 Sum_probs=86.9
Q ss_pred CCEEEEEccCCCCCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEE--CCEEEEEeCCCCCCCCceEEEEeCCCCeEEE
Q psy10286 508 KNRLYAFGGYNGSERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAAL--NDKLYVCGGYDGVSSLNTVECYEPDKDQWRI 585 (748)
Q Consensus 508 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 585 (748)
+++..+.+|. ..+..||..++.=..+...-..+.+-.++.+ +|+-..-||.+| .+-++|...-.-+.
T Consensus 51 dk~~LAaa~~------qhvRlyD~~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDg-----t~kIWdlR~~~~qR 119 (311)
T KOG0315|consen 51 DKKDLAAAGN------QHVRLYDLNSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDG-----TVKIWDLRSLSCQR 119 (311)
T ss_pred CcchhhhccC------CeeEEEEccCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCc-----eEEEEeccCcccch
Confidence 4555555653 4688999988742222222223333344443 788777788654 44556655422111
Q ss_pred ccCCCCCCcceEEEEECC-EEEEEccCCCCcccCeEEEEECCCCcEEEccCCCCCCcc-eeEEEE-CCEEEEEeccCCCc
Q psy10286 586 VKSMQKHRSAGGVIAFDS-YVYALGGHDGLSIFDSVERYDPKTDEWTSVKPMLTKRCR-LGVAAL-NNKIYVCGGYDGAI 662 (748)
Q Consensus 586 ~~~~~~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~ 662 (748)
.=..+.|. -+++..-+ .=.+.|-. ...++++|..++..+.. .+|..-.. .++++. +|+.++.+ .+
T Consensus 120 ~~~~~spV--n~vvlhpnQteLis~dq-----sg~irvWDl~~~~c~~~-liPe~~~~i~sl~v~~dgsml~a~-nn--- 187 (311)
T KOG0315|consen 120 NYQHNSPV--NTVVLHPNQTELISGDQ-----SGNIRVWDLGENSCTHE-LIPEDDTSIQSLTVMPDGSMLAAA-NN--- 187 (311)
T ss_pred hccCCCCc--ceEEecCCcceEEeecC-----CCcEEEEEccCCccccc-cCCCCCcceeeEEEcCCCcEEEEe-cC---
Confidence 11111111 12233322 22333433 34699999999876554 23333322 233333 45544433 22
Q ss_pred cccEEEEEeCCCCcE-EEccCCC--CCCcceEE-EEE--CCEEEEEeCCCCCCCCCeEEEEeCCCC
Q psy10286 663 FLQSVEMYDPITDEW-KMIASMN--VMRSRVAL-VAN--MGKLWAIGGYDGVSNLPTVEVYDPSTD 722 (748)
Q Consensus 663 ~~~~v~~yd~~~~~W-~~~~~~p--~~r~~~~~-~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~ 722 (748)
...+|+++.-+++- +.+.+.. .++.+|.. |.+ +++.++..+.+ .++.+++.++.
T Consensus 188 -kG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssd-----ktv~iwn~~~~ 247 (311)
T KOG0315|consen 188 -KGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSD-----KTVKIWNTDDF 247 (311)
T ss_pred -CccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCC-----ceEEEEecCCc
Confidence 23566666655322 1222211 23344432 222 56666665533 34555555443
No 267
>KOG1898|consensus
Probab=22.30 E-value=1.5e+03 Score=27.72 Aligned_cols=167 Identities=11% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEE------CCEEEEEccCCCCcccCe------EEEEE--CCCCcEE
Q psy10286 566 GVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAF------DSYVYALGGHDGLSIFDS------VERYD--PKTDEWT 631 (748)
Q Consensus 566 ~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~------~~~iyv~GG~~~~~~~~~------~~~yd--~~~~~W~ 631 (748)
+.+....+..+|+.+++-.-.-.++..-..++++.+ ...+..+|+..+...... ++.|+ -..++-+
T Consensus 848 ~~~w~s~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~le 927 (1205)
T KOG1898|consen 848 GNGWVSSIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLE 927 (1205)
T ss_pred ccCccceEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceee
Q ss_pred EccCCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEEEEEeCCCCCCCC
Q psy10286 632 SVKPMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKLWAIGGYDGVSNL 711 (748)
Q Consensus 632 ~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~ 711 (748)
.+.....+..-++++.+.|++++-=| +.+++||...++-..-.....-+..-+.....+.=+++|-...+-
T Consensus 928 llh~T~~~~~v~Ai~~f~~~~LagvG-------~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~~~RI~VgD~qeSV-- 998 (1205)
T KOG1898|consen 928 LLHKTEIPGPVGAICPFQGRVLAGVG-------RFLRLYDLGKKKLLRKCELKFIPNRISSIQTYGARIVVGDIQESV-- 998 (1205)
T ss_pred eeeccCCCccceEEeccCCEEEEecc-------cEEEEeeCChHHHHhhhhhccCceEEEEEeecceEEEEeeccceE--
Q ss_pred CeEEEEeCCCCceEecCCCCCCCcceEEEEe
Q psy10286 712 PTVEVYDPSTDSWAFVAPMCAHEGGVGVGVI 742 (748)
Q Consensus 712 ~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~ 742 (748)
...+|+++.|....+.+-|.+|.-.++.++
T Consensus 999 -~~~~y~~~~n~l~~fadD~~pR~Vt~~~~l 1028 (1205)
T KOG1898|consen 999 -HFVRYRREDNQLIVFADDPVPRHVTALELL 1028 (1205)
T ss_pred -EEEEEecCCCeEEEEeCCCccceeeEEEEe
No 268
>cd04404 RhoGAP-p50rhoGAP RhoGAP-p50rhoGAP: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain of p50RhoGAP-like proteins; p50RhoGAP, also known as RhoGAP-1, contains a C-terminal RhoGAP domain and an N-terminal Sec14 domain which binds phosphatidylinositol 3,4,5-trisphosphate (PtdIns(3,4,5)P3). It is ubiquitously expressed and preferentially active on Cdc42. This subgroup also contains closely related ARHGAP8. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell proliferation and the JNK signaling pathway. GTPases generally have a low intrinsic GTPase hydrolytic activity but there are family-specific groups of GAPs that enhance the rate of GTP hydrolysis by several orders of magnitude.
Probab=21.03 E-value=4.6e+02 Score=24.85 Aligned_cols=42 Identities=12% Similarity=0.111 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHHHhhhhhccCcccccCCHHhHhcccccCCcC
Q psy10286 287 LQLSEAADKYVQQYFHEVSMSDEFIGLGVNEVNDIVKRSELH 328 (748)
Q Consensus 287 ~~l~~~~~~~i~~~~~~l~~~~~f~~L~~~~l~~il~~~~l~ 328 (748)
......+++|+..|+.++....+...|+.+.|..++...-+.
T Consensus 125 P~~n~~~L~~L~~~l~~i~~~s~~NkM~~~nLa~vfaP~l~~ 166 (195)
T cd04404 125 PEENYQVLKYLIKFLVQVSAHSDQNKMTNSNLAVVFGPNLLW 166 (195)
T ss_pred CHHHHHHHHHHHHHHHHHHhcccccCCCHhHhheeeeccccC
Confidence 345678889999999999999999999999988887766554
No 269
>KOG0294|consensus
Probab=20.94 E-value=5.9e+02 Score=26.18 Aligned_cols=94 Identities=13% Similarity=0.207 Sum_probs=0.0
Q ss_pred ECCCCcEEEcc--CCCCCCcceeEEEECCEEEEEeccCCCccccEEEEEeCCCCcEEEccCCCCCCcceEEEEECCEE--
Q psy10286 624 DPKTDEWTSVK--PMLTKRCRLGVAALNNKIYVCGGYDGAIFLQSVEMYDPITDEWKMIASMNVMRSRVALVANMGKL-- 699 (748)
Q Consensus 624 d~~~~~W~~~~--~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~l-- 699 (748)
+.+..+|+..+ ..+.--...+++.+++.-.+-||.+ ..|.+||..++ .+++.+-..-....++....-.
T Consensus 25 ~~~s~~~~l~~lF~~~aH~~sitavAVs~~~~aSGssD-----etI~IYDm~k~--~qlg~ll~HagsitaL~F~~~~S~ 97 (362)
T KOG0294|consen 25 CTDSVKPTLKPLFAFSAHAGSITALAVSGPYVASGSSD-----ETIHIYDMRKR--KQLGILLSHAGSITALKFYPPLSK 97 (362)
T ss_pred cccccceeeeccccccccccceeEEEecceeEeccCCC-----CcEEEEeccch--hhhcceeccccceEEEEecCCcch
Q ss_pred -EEEeCCCCCCCCCeEEEEeCCCCceEecCCC
Q psy10286 700 -WAIGGYDGVSNLPTVEVYDPSTDSWAFVAPM 730 (748)
Q Consensus 700 -~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~ 730 (748)
.++.|.++. .|-+++. +.|..+..+
T Consensus 98 shLlS~sdDG----~i~iw~~--~~W~~~~sl 123 (362)
T KOG0294|consen 98 SHLLSGSDDG----HIIIWRV--GSWELLKSL 123 (362)
T ss_pred hheeeecCCC----cEEEEEc--CCeEEeeee
No 270
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=20.89 E-value=5.9e+02 Score=28.24 Aligned_cols=87 Identities=17% Similarity=0.137 Sum_probs=52.2
Q ss_pred CCCCCeEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEE
Q psy10286 520 SERLSTVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVI 599 (748)
Q Consensus 520 ~~~~~~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~ 599 (748)
...++.++.+|+.++.=-..+++..-|. .+....++.+.+++|.+|...+. +...|+.+-.-..-+.-+..+.. .+.
T Consensus 371 ~~~ls~LvllD~~tg~~l~~S~~~~Ir~-r~~~~~~~~~vaI~g~~G~~~ik-Lvlid~~tLev~kes~~~i~~~S-~l~ 447 (489)
T PF05262_consen 371 NHYLSELVLLDSDTGDTLKRSPVNGIRG-RTFYEREDDLVAIAGCSGNAAIK-LVLIDPETLEVKKESEDEISWQS-SLI 447 (489)
T ss_pred CCcceeEEEEeCCCCceecccccceecc-ceeEEcCCCEEEEeccCCchheE-EEecCcccceeeeeccccccccC-ceE
Confidence 3466789999999986555555543333 35556788888999986554332 33346766655544444433322 444
Q ss_pred EECCEEEEEc
Q psy10286 600 AFDSYVYALG 609 (748)
Q Consensus 600 ~~~~~iyv~G 609 (748)
+.++.+|++-
T Consensus 448 ~~~~~iyaVv 457 (489)
T PF05262_consen 448 VDGQMIYAVV 457 (489)
T ss_pred EcCCeEEEEE
Confidence 4566777554
No 271
>KOG0282|consensus
Probab=20.83 E-value=6.1e+02 Score=27.63 Aligned_cols=51 Identities=10% Similarity=0.190 Sum_probs=27.7
Q ss_pred ceEEEEeCCCCceEEc---cCCCcccceeEEEEECCEEEEEccCCCCCCCCeEEEEECCCCe
Q psy10286 477 STVEVFDPLVGRWQMA---EAMSMLRSRVGVAVMKNRLYAFGGYNGSERLSTVEEFDPVRRV 535 (748)
Q Consensus 477 ~~~~~yd~~~~~W~~~---~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 535 (748)
..+-.+|..|++-..- ..+|..-..|. -+..+|+.||.+ ..+..||.++++
T Consensus 280 ~~lKlwDtETG~~~~~f~~~~~~~cvkf~p---d~~n~fl~G~sd-----~ki~~wDiRs~k 333 (503)
T KOG0282|consen 280 RFLKLWDTETGQVLSRFHLDKVPTCVKFHP---DNQNIFLVGGSD-----KKIRQWDIRSGK 333 (503)
T ss_pred eeeeeeccccceEEEEEecCCCceeeecCC---CCCcEEEEecCC-----CcEEEEeccchH
Confidence 4456677777764332 12221111110 134899999965 356777777664
No 272
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=20.76 E-value=1.1e+03 Score=25.73 Aligned_cols=98 Identities=11% Similarity=0.023 Sum_probs=48.6
Q ss_pred eEEEEECCCCeEEEccCCCCCcceeEEEEECCEEEEEeCCCCCCCCceEEEEeCCCCeEEEccCCCCCCcceEEEEECCE
Q psy10286 525 TVEEFDPVRRVWNKVSPMCFKRSAVGAAALNDKLYVCGGYDGVSSLNTVECYEPDKDQWRIVKSMQKHRSAGGVIAFDSY 604 (748)
Q Consensus 525 ~v~~yd~~t~~W~~~~~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~~~~ 604 (748)
..+..++..+---+++.-..-|+ .-...+++-.++|-.++ +.+.+||..+..-..+.. +..+-....+.-+|+
T Consensus 342 kaFi~~~~~~~~iqv~~~~~VrY--~r~~~~~e~~vigt~dg----D~l~iyd~~~~e~kr~e~-~lg~I~av~vs~dGK 414 (668)
T COG4946 342 KAFIMRPWDGYSIQVGKKGGVRY--RRIQVDPEGDVIGTNDG----DKLGIYDKDGGEVKRIEK-DLGNIEAVKVSPDGK 414 (668)
T ss_pred cEEEECCCCCeeEEcCCCCceEE--EEEccCCcceEEeccCC----ceEEEEecCCceEEEeeC-CccceEEEEEcCCCc
Confidence 34555554443333333222233 23333445667776554 467888888877555432 112222222223445
Q ss_pred EEEEccCCCCcccCeEEEEECCCCcEEEcc
Q psy10286 605 VYALGGHDGLSIFDSVERYDPKTDEWTSVK 634 (748)
Q Consensus 605 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~ 634 (748)
-.+++-. .-.+|.+|..+++-+.+.
T Consensus 415 ~~vvaNd-----r~el~vididngnv~~id 439 (668)
T COG4946 415 KVVVAND-----RFELWVIDIDNGNVRLID 439 (668)
T ss_pred EEEEEcC-----ceEEEEEEecCCCeeEec
Confidence 4444322 235788888777766553
Done!